RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11495
         (81 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.018
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 16/81 (19%)

Query: 8   SAYATYRLCFEEAMSGLDE-----VFSREKGVNRED----RIHGSLLVLN---ELLRVSN 55
           SA  T  +  +     L       +  +      +D     +  +   L+   E +R   
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 56  VTWER----TYEDLMNRLQVS 72
            TW+       + L   ++ S
Sbjct: 342 ATWDNWKHVNCDKLTTIIESS 362



 Score = 25.2 bits (54), Expect = 2.9
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 24  LDEVFSREKG---VNREDRIHGSLLVLNELLRVSNVTWER--------TYEDLMNRLQVS 72
              + S+E+    +  +D + G+L +   LL       ++         Y+ LM+ ++  
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 73  TCDDSEIPR 81
               S + R
Sbjct: 102 QRQPSMMTR 110


>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG,
           structural genomics; 2.50A {Sinorhizobium meliloti}
          Length = 365

 Score = 24.1 bits (53), Expect = 5.9
 Identities = 5/11 (45%), Positives = 5/11 (45%)

Query: 59  ERTYEDLMNRL 69
           E TY D    L
Sbjct: 354 EFTYADYEQSL 364


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0796    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,229,430
Number of extensions: 60468
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 5
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)