Query psy11496
Match_columns 607
No_of_seqs 175 out of 254
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 19:53:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2734|consensus 100.0 2E-135 4E-140 1070.3 44.5 529 1-607 1-536 (536)
2 PF08216 CTNNBL: Catenin-beta- 100.0 2.9E-42 6.4E-47 308.1 9.2 105 70-174 2-108 (108)
3 KOG2734|consensus 100.0 1.3E-27 2.8E-32 254.0 22.4 305 244-586 168-499 (536)
4 PLN03200 cellulose synthase-in 97.9 0.0019 4.1E-08 82.1 25.5 248 130-399 381-661 (2102)
5 PF05804 KAP: Kinesin-associat 97.7 0.0041 8.8E-08 72.5 22.0 251 129-426 266-518 (708)
6 PLN03200 cellulose synthase-in 97.6 0.017 3.6E-07 73.8 26.4 266 129-432 421-727 (2102)
7 PF05804 KAP: Kinesin-associat 97.4 0.037 8E-07 64.8 25.1 264 132-430 310-606 (708)
8 cd00020 ARM Armadillo/beta-cat 96.9 0.013 2.8E-07 50.4 10.6 102 148-264 2-103 (120)
9 PF10508 Proteasom_PSMB: Prote 96.9 0.086 1.9E-06 59.2 19.9 161 133-313 98-259 (503)
10 KOG4199|consensus 96.7 0.099 2.1E-06 56.6 17.8 242 130-394 165-420 (461)
11 PF10508 Proteasom_PSMB: Prote 96.6 0.41 8.9E-06 53.9 23.0 212 146-385 70-288 (503)
12 KOG2160|consensus 96.4 0.13 2.7E-06 55.7 16.6 186 223-431 96-285 (342)
13 PF03224 V-ATPase_H_N: V-ATPas 95.9 0.14 3.1E-06 53.7 13.5 217 206-450 57-287 (312)
14 cd00020 ARM Armadillo/beta-cat 95.5 0.24 5.1E-06 42.5 11.2 100 200-307 3-102 (120)
15 KOG4199|consensus 95.2 2.9 6.3E-05 45.7 20.5 267 117-402 93-384 (461)
16 KOG0166|consensus 94.8 0.89 1.9E-05 51.7 15.9 235 129-394 212-462 (514)
17 PF03224 V-ATPase_H_N: V-ATPas 94.6 1.8 3.9E-05 45.5 16.9 226 156-400 58-293 (312)
18 PF08045 CDC14: Cell division 94.6 0.48 1E-05 49.5 12.4 82 318-401 104-188 (257)
19 PF08045 CDC14: Cell division 94.4 0.31 6.7E-06 50.9 10.6 90 276-373 113-203 (257)
20 cd00256 VATPase_H VATPase_H, r 94.3 7.5 0.00016 43.6 21.6 336 154-567 54-409 (429)
21 KOG0166|consensus 92.7 2.2 4.7E-05 48.7 14.1 220 130-375 255-487 (514)
22 KOG1048|consensus 91.6 4.7 0.0001 47.7 15.6 167 124-308 230-429 (717)
23 PF00514 Arm: Armadillo/beta-c 91.6 0.16 3.4E-06 37.7 2.5 40 143-182 2-41 (41)
24 PF13764 E3_UbLigase_R4: E3 ub 91.2 5.6 0.00012 47.8 15.9 63 291-357 112-174 (802)
25 PF06371 Drf_GBD: Diaphanous G 91.0 0.56 1.2E-05 44.7 6.4 118 252-373 66-186 (187)
26 KOG4500|consensus 89.9 6.9 0.00015 44.2 14.1 235 99-357 158-413 (604)
27 smart00185 ARM Armadillo/beta- 86.6 1.1 2.5E-05 31.9 3.9 38 144-181 3-40 (41)
28 KOG0946|consensus 85.5 71 0.0015 38.7 19.4 253 132-401 43-327 (970)
29 cd00256 VATPase_H VATPase_H, r 83.1 64 0.0014 36.4 17.3 126 224-359 68-198 (429)
30 COG5064 SRP1 Karyopherin (impo 79.8 18 0.00039 40.0 11.1 252 124-396 168-474 (526)
31 PF10165 Ric8: Guanine nucleot 76.3 83 0.0018 35.3 15.6 174 240-427 10-193 (446)
32 KOG0168|consensus 75.2 28 0.00061 42.2 11.8 45 266-310 394-440 (1051)
33 PF11701 UNC45-central: Myosin 74.1 25 0.00055 33.7 9.5 73 322-398 60-137 (157)
34 PF14664 RICTOR_N: Rapamycin-i 73.2 1E+02 0.0022 34.0 15.0 186 138-357 10-199 (371)
35 PF13764 E3_UbLigase_R4: E3 ub 72.1 1.6E+02 0.0035 35.9 17.2 176 248-432 113-308 (802)
36 KOG1789|consensus 71.0 13 0.00029 45.9 8.0 107 138-264 2032-2142(2235)
37 KOG1293|consensus 70.3 9.4 0.0002 44.7 6.4 81 287-376 410-492 (678)
38 PF05536 Neurochondrin: Neuroc 68.6 84 0.0018 36.3 13.6 101 269-377 69-171 (543)
39 PF04826 Arm_2: Armadillo-like 66.1 1.3E+02 0.0029 31.4 13.4 152 88-263 8-186 (254)
40 KOG2160|consensus 61.4 2.6E+02 0.0056 30.9 17.9 102 316-431 97-199 (342)
41 PF06025 DUF913: Domain of Unk 61.3 1.5E+02 0.0032 32.8 13.3 184 137-355 10-205 (379)
42 PF04821 TIMELESS: Timeless pr 55.2 1.9E+02 0.0041 30.3 12.3 96 146-241 33-151 (266)
43 KOG2122|consensus 54.3 6.6E+02 0.014 33.4 18.1 229 127-399 209-447 (2195)
44 KOG4189|consensus 54.1 37 0.00079 34.7 6.5 60 486-545 54-123 (209)
45 KOG4224|consensus 53.7 14 0.00031 41.0 3.9 115 291-424 121-236 (550)
46 PF11841 DUF3361: Domain of un 53.4 1.4E+02 0.003 29.6 10.2 103 147-263 5-113 (160)
47 PF11264 ThylakoidFormat: Thyl 50.5 1.8E+02 0.0039 30.1 10.9 130 434-585 50-191 (216)
48 KOG4500|consensus 49.5 1.9E+02 0.0041 33.3 11.6 278 93-400 57-367 (604)
49 PF09759 Atx10homo_assoc: Spin 46.8 94 0.002 28.4 7.4 66 273-345 5-71 (102)
50 PF14500 MMS19_N: Dos2-interac 46.5 1.3E+02 0.0028 31.5 9.5 127 156-306 2-133 (262)
51 PF10165 Ric8: Guanine nucleot 46.3 3.4E+02 0.0073 30.6 13.3 114 221-334 43-168 (446)
52 KOG2122|consensus 45.2 4.2E+02 0.0091 35.0 14.5 112 241-356 224-349 (2195)
53 cd00197 VHS_ENTH_ANTH VHS, ENT 45.1 2.1E+02 0.0046 25.5 9.5 81 176-259 4-87 (115)
54 KOG1222|consensus 44.8 2.4E+02 0.0052 32.9 11.6 191 129-352 280-473 (791)
55 PF07757 AdoMet_MTase: Predict 43.9 45 0.00097 31.2 4.9 57 100-156 13-69 (112)
56 PF04826 Arm_2: Armadillo-like 42.7 32 0.00069 35.9 4.3 53 130-182 152-205 (254)
57 KOG2759|consensus 42.2 5.2E+02 0.011 29.5 13.6 221 131-374 176-438 (442)
58 COG5064 SRP1 Karyopherin (impo 40.3 99 0.0021 34.5 7.6 117 133-262 306-424 (526)
59 PF13646 HEAT_2: HEAT repeats; 39.7 1.5E+02 0.0032 24.3 7.1 29 155-183 1-30 (88)
60 PF02985 HEAT: HEAT repeat; I 38.8 37 0.00081 23.7 2.9 27 155-181 2-28 (31)
61 PF12726 SEN1_N: SEN1 N termin 37.5 70 0.0015 38.0 6.5 94 142-239 512-608 (727)
62 PF05536 Neurochondrin: Neuroc 37.4 7.2E+02 0.016 28.9 20.9 92 126-217 113-216 (543)
63 KOG4464|consensus 37.3 1E+02 0.0022 35.0 7.3 80 313-394 106-192 (532)
64 KOG1788|consensus 36.7 5.6E+02 0.012 33.0 13.4 122 276-399 664-840 (2799)
65 PF11841 DUF3361: Domain of un 36.1 3.4E+02 0.0074 26.9 9.9 138 340-492 5-149 (160)
66 KOG3678|consensus 35.4 96 0.0021 35.8 6.7 144 245-401 173-319 (832)
67 PRK13266 Thf1-like protein; Re 34.9 4.1E+02 0.009 27.7 10.8 125 434-585 55-196 (225)
68 PF13646 HEAT_2: HEAT repeats; 33.2 27 0.00058 28.8 1.7 31 154-184 32-62 (88)
69 KOG2973|consensus 32.5 7.3E+02 0.016 27.5 13.2 159 156-346 6-173 (353)
70 KOG4224|consensus 32.0 8.2E+02 0.018 27.9 14.3 233 134-396 189-424 (550)
71 PLN03060 inositol phosphatase- 30.5 4.7E+02 0.01 27.0 10.2 125 434-585 53-186 (206)
72 TIGR03060 PS_II_psb29 photosys 30.3 5.3E+02 0.011 26.8 10.6 124 434-585 55-194 (214)
73 PF11701 UNC45-central: Myosin 28.7 1E+02 0.0022 29.5 5.1 79 225-306 58-138 (157)
74 KOG2274|consensus 28.5 7.4E+02 0.016 31.0 12.7 67 112-186 580-653 (1005)
75 KOG0414|consensus 26.4 2E+02 0.0044 36.4 7.9 121 154-290 313-435 (1251)
76 PF00514 Arm: Armadillo/beta-c 26.3 1.1E+02 0.0025 22.3 3.9 39 379-427 2-40 (41)
77 PF11864 DUF3384: Domain of un 25.5 1.6E+02 0.0035 33.1 6.5 111 123-239 267-388 (464)
78 PF09450 DUF2019: Domain of un 25.5 47 0.001 30.8 1.9 26 145-170 37-64 (106)
79 cd08787 CARD_NOD2_1_CARD15 Cas 25.4 1.6E+02 0.0036 26.3 5.1 27 360-388 48-74 (87)
80 PF14225 MOR2-PAG1_C: Cell mor 24.5 4E+02 0.0087 28.1 8.8 31 252-282 111-143 (262)
81 KOG3678|consensus 23.9 3.9E+02 0.0085 31.2 8.9 88 293-396 177-271 (832)
82 KOG2759|consensus 23.6 1.1E+03 0.025 26.9 16.5 132 317-465 169-308 (442)
83 KOG3036|consensus 23.5 9.6E+02 0.021 25.9 14.1 77 365-450 99-184 (293)
84 PF06371 Drf_GBD: Diaphanous G 23.3 1.3E+02 0.0029 28.5 4.7 85 195-282 98-186 (187)
85 PF11698 V-ATPase_H_C: V-ATPas 23.2 88 0.0019 29.5 3.3 39 142-180 75-113 (119)
86 PF08389 Xpo1: Exportin 1-like 22.5 4.6E+02 0.01 23.4 7.9 113 141-263 19-137 (148)
87 KOG4464|consensus 22.4 5.8E+02 0.013 29.4 9.8 74 282-359 125-200 (532)
88 PF05004 IFRD: Interferon-rela 22.4 1.8E+02 0.0039 31.1 5.9 53 128-182 202-260 (309)
89 KOG2274|consensus 21.7 1.9E+02 0.0042 35.7 6.4 58 118-185 101-160 (1005)
90 PF08569 Mo25: Mo25-like; Int 21.5 1.1E+03 0.024 25.8 14.1 185 190-394 62-259 (335)
91 COG5231 VMA13 Vacuolar H+-ATPa 21.1 96 0.0021 34.3 3.5 45 137-181 383-427 (432)
92 PF05334 DUF719: Protein of un 20.9 1E+02 0.0022 31.1 3.5 48 530-581 97-147 (181)
93 KOG0946|consensus 20.8 7.1E+02 0.015 30.8 10.6 185 110-306 115-325 (970)
94 PLN00047 photosystem II biogen 20.5 8.1E+02 0.018 26.5 10.1 124 434-585 106-239 (283)
95 COG4553 DepA Poly-beta-hydroxy 20.4 1.7E+02 0.0037 32.1 5.2 41 486-545 276-316 (415)
96 PF04499 SAPS: SIT4 phosphatas 20.4 4.7E+02 0.01 30.0 8.9 129 148-289 57-190 (475)
No 1
>KOG2734|consensus
Probab=100.00 E-value=1.7e-135 Score=1070.27 Aligned_cols=529 Identities=60% Similarity=0.918 Sum_probs=480.4
Q ss_pred CchhhhccCCCC-CCCCCCCCcchhhhhhhhHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q psy11496 1 MDIGELLSYKPK-SPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEEKIKTL 79 (607)
Q Consensus 1 ~d~~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~il~~ 79 (607)
||||+|++|||. ++|||++|.+. ..+++.+.++.++..- +.. ... . +.+++.+..+|++
T Consensus 1 mdvg~lls~q~~~~~KRp~d~~~~------~~es~~~~kq~gs~~~------ee~----~~~-~---eeae~s~~~~L~~ 60 (536)
T KOG2734|consen 1 MDVGELLSNQPERGIKRPADDADE------PAESKMRQKQTGSDEW------EED----MFV-V---EEAEKSKHNLLDI 60 (536)
T ss_pred CchhhHhhcCCccCCCCCCccccc------hhhhhhhhhhcCCCCC------cch----hhH-H---HhhhhhhhHHHHH
Confidence 899999999999 99999998853 2455666666665531 011 011 1 2257778889998
Q ss_pred HhhhhhhhhccHHHHHHHHHHHHHHhhhhHHHHhcCCCCchhhhhcHHhHHHHHHHHhhcccCCCchHHHHhcCChHHHH
Q psy11496 80 IEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELHAIATVPDLYPLLVQLKAVSSML 159 (607)
Q Consensus 80 ~~~~~~~e~ld~~~lkkl~l~fEk~~~kN~e~R~K~~d~P~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~ 159 (607)
+|.++ .+|||+.||||+++|||+|+||||+|+|||+||+|||.+||+||+||++|+|||.||+++||+||+
T Consensus 61 ld~~~---------~~klvl~~ekr~~~Nqe~RiK~~dnPeKFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL 131 (536)
T KOG2734|consen 61 LDTQE---------AKKLVLRFEKRIRKNQELRIKYPDNPEKFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLL 131 (536)
T ss_pred Hhhhh---------HHHHHHHHHHHhhhhHHhhccCCCCHHHHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHH
Confidence 86432 259999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhhhhhHHHhhhhhc
Q psy11496 160 ELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCE 239 (607)
Q Consensus 160 ~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e 239 (607)
+||+|+||||+|+|+++|+||||+|+..|+++++..||+||++++++.|||||++||||++++|+.|||++|+++|||++
T Consensus 132 ~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~ 211 (536)
T KOG2734|consen 132 ELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVE 211 (536)
T ss_pred HHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHH
Q psy11496 240 LKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQ 319 (607)
Q Consensus 240 ~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~ 319 (607)
++|++|..+++++++.|||+|+..+.+||.||+||||||+|++|++.+++..+|.+||||.||+.||.||++||.+.+|.
T Consensus 212 ~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~ 291 (536)
T KOG2734|consen 212 VRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEE 291 (536)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhcccCCcCchhHHHHHhhcCCCCchhhhhHHhhhchhhhHHhhh
Q psy11496 320 EMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKVSRNGSLKVLDHAICGPSGKDNANKFVDILGLRTIFPLFM 399 (607)
Q Consensus 320 E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k~~r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfM 399 (607)
|||+|+||||||+||.|+||++|+++||++||++||++||.++++|+|||||||.|++|.++|.+||+++||+|+||+||
T Consensus 292 EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 292 EMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCcCCCcchhhhhHHHHHHHHhhhcCCCchhhHHHHHHHhhcchhhHHHHHHhhhhhhhhHHHHHHHHHhhcCCch
Q psy11496 400 KTPKKNRRKIITVEEHEEHVVSIKANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLSKHVVSIIANMLRNCSGP 479 (607)
Q Consensus 400 kk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l~~~~r~Rll~KFvE~~~eK~drL~el~~k~~~Ehvl~IiaSLl~~l~s~ 479 (607)
+.|.|.+++..++.+++||+|+|++||+++|.+..|.|++.||+||+++|+||++++|.+|.
T Consensus 372 k~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~r~R~l~KF~End~EKvdRl~el~lky~------------------ 433 (536)
T KOG2734|consen 372 KTPLKRKKRKISADEHEEHVCSILASLLRNLDGVHRQRLLRKFVENDFEKVDRLMELYLKYL------------------ 433 (536)
T ss_pred hCccchhcccCcHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccccHHHHHHHHHHHHHH------------------
Confidence 88887777778999999999999999999998876776666666666666666655555555
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhh------hccchhhhHHHHhhhhccchHHHHhHHHHHHHHhcCch
Q psy11496 480 QRQRLLSKFTENDHEKVDRLLELHFKYLSKVDEADK------EQRDEDEDENYLRRLEAGLFTLQLVDYIIVETCAAGAA 553 (607)
Q Consensus 480 ~R~RlLaKFvE~dyEKvdRL~eLr~~y~~rv~~~d~------~~~e~~ede~yl~rLdaGLf~LQ~iD~iL~~L~~~~~~ 553 (607)
.+|+..++ .+.++.++.||++++++|+|+||++++|+.|+|+. .+
T Consensus 434 ----------------------------~~v~~~d~~~~~d~~~~dd~~~~~~l~~l~~glF~lq~~~lIl~e~~~~-~~ 484 (536)
T KOG2734|consen 434 ----------------------------IKVQGIDESQKLDFIDEDDKEEKWYLQRLDHGLFTLQRLVLILSEVCAN-VV 484 (536)
T ss_pred ----------------------------HHhhhHHHHhhhccCcccchhhhHHHHHhcccchHHHHHHHHHHHHHhh-hH
Confidence 55554432 33455778999999999999999999999999965 78
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHhhcC
Q psy11496 554 TIKQRVLQIINLRGGSLKTIRHVMREYAGNLGDVGDTDWRDLEQEHILNLVDKF 607 (607)
Q Consensus 554 ~i~~ri~~lL~~~~~~~~~I~~~l~ey~~~l~d~~~~e~~~~~~~~~~~l~~~~ 607 (607)
.+++|+.+++++++.+.+.++.++++|.+|+|++ ..+++.+|.+|+.+++.|
T Consensus 485 ~~~~r~~~~~~~~~~s~~~~~~i~~ey~en~gd~--~~~r~~e~~~vl~l~~~f 536 (536)
T KOG2734|consen 485 TLKQRVMQILNMRGSSDKLLRNIIEEYAENLGDG--SYYREDEQPMILSLLESF 536 (536)
T ss_pred HHHHHHHHHHHccccccccchHHHHHhhhccCCc--cccChhhhhhhhhhcccC
Confidence 9999999999999999999999999999999998 889999999999999987
No 2
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=100.00 E-value=2.9e-42 Score=308.06 Aligned_cols=105 Identities=56% Similarity=0.876 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhhh--hhhhccHHHHHHHHHHHHHHhhhhHHHHhcCCCCchhhhhcHHhHHHHHHHHhhcccCCCchH
Q psy11496 70 KQEEEKIKTLIEETE--EKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELHAIATVPDLYP 147 (607)
Q Consensus 70 ~~e~~~il~~~~~~~--~~e~ld~~~lkkl~l~fEk~~~kN~e~R~K~~d~P~KFmdSE~dLd~~Ik~l~~La~~P~LYp 147 (607)
++++.+|+++++..+ +.+.+|++|+||++++|||++++||+||+||||+|+|||+||+|||++||+|++||++|+|||
T Consensus 2 e~~~~~il~~~e~~~~~~~e~lD~~~lkklvl~fek~i~kN~e~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp 81 (108)
T PF08216_consen 2 EEEREDILEIVEEAEEEEVEVLDEAWLKKLVLSFEKRINKNQEMRIKYPDDPEKFMDSEVDLDEEIKKLSVLATAPELYP 81 (108)
T ss_pred chHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHhHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHccCChhHHH
Confidence 678899999999532 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHhhccCCchhHHHHH
Q psy11496 148 LLVQLKAVSSMLELVLHENTDIAVAVV 174 (607)
Q Consensus 148 ~~v~l~~v~sL~~LLsHeNtDIai~vi 174 (607)
.||++||++||+|||+|||||||++||
T Consensus 82 ~lv~l~~v~sL~~LL~HeN~DIai~vi 108 (108)
T PF08216_consen 82 ELVELGAVPSLLGLLSHENTDIAIDVI 108 (108)
T ss_pred HHHHcCCHHHHHHHHCCCCcceehccC
Confidence 999999999999999999999999986
No 3
>KOG2734|consensus
Probab=99.96 E-value=1.3e-27 Score=253.99 Aligned_cols=305 Identities=21% Similarity=0.218 Sum_probs=226.1
Q ss_pred HHHHHHhhh---hHHHHHHHhhccCCCCcchhhHHHHHHHHh---hcChhHHHHhhccccHHHHHHHHhhhhcCCCCChH
Q psy11496 244 VIHDIGKQG---IIQWSLKRLKAKIPFDGNKLYTSEILSILC---QKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPE 317 (607)
Q Consensus 244 ~~~~l~~~~---LL~wLL~Rl~~~~~~D~Nk~YasEiL~Ill---q~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~e 317 (607)
+.+.++..+ +|.-++.|+++..+-++.++|+ .|+++. .-.++.....++...+.|||.++-. +-|-+ -
T Consensus 168 LidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~--~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~---k~~f~-a 241 (536)
T KOG2734|consen 168 LIDALVDGQVLALLVQNVERLDESVKEEADGVHN--TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKG---KAAFD-A 241 (536)
T ss_pred HHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH--HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhc---ccCcc-h
Confidence 456666654 5556669999877778889998 899884 4466777777777568899987544 22222 3
Q ss_pred HHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHHHHHhccc-CCcCc------hhHHHHHhhcCCCCchhhhhHHhhh
Q psy11496 318 EQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMNLMLRERK-VSRNG------SLKVLDHAICGPSGKDNANKFVDIL 389 (607)
Q Consensus 318 E~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml~mL~~~k-~~r~~------AlkvlD~al~~~~~~~~c~kFVe~~ 389 (607)
+..|.-++ |+.++ .+.+|+.+.+..+||+++++=++.|| ..+.. ..|+|||+||+.-.|+|+.+|+..+
T Consensus 242 Nk~YasEi---Laillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~E 318 (536)
T KOG2734|consen 242 NKQYASEI---LAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGE 318 (536)
T ss_pred hHHHHHHH---HHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccc
Confidence 66676554 46666 57779999999999999999999886 33332 5999999999999999999999999
Q ss_pred chhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhhcCCCchhhHHHHHHHhhcchhhHHHHHHhhh-----------
Q psy11496 390 GLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHF----------- 458 (607)
Q Consensus 390 GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l~~~~r~Rll~KFvE~~~eK~drL~el~~----------- 458 (607)
|+..| .++|+ .||.+ ..++.++++|++.+ +.-...|.||||--|.|+ .|.+|+
T Consensus 319 GlqLm-~Lmlr-~Kk~s--r~SalkvLd~am~g----------~~gt~~C~kfVe~lGLrt--iF~~FMk~p~k~~~~~~ 382 (536)
T KOG2734|consen 319 GLQLM-NLMLR-EKKVS--RGSALKVLDHAMFG----------PEGTPNCNKFVEILGLRT--IFPLFMKTPLKRKKRKI 382 (536)
T ss_pred cHHHH-HHHHH-HHHHh--hhhHHHHHHHHHhC----------CCchHHHHHHHHHHhHHH--HHHHHhhCccchhcccC
Confidence 99998 66664 55443 35789999998554 323568999999999999 898886
Q ss_pred --hhhhhHHHHHHHHHhhcCCchhhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhccchhhhHHHHhhhhccchH
Q psy11496 459 --KYLSKHVVSIIANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVDEADKEQRDEDEDENYLRRLEAGLFT 536 (607)
Q Consensus 459 --k~~~Ehvl~IiaSLl~~l~s~~R~RlLaKFvE~dyEKvdRL~eLr~~y~~rv~~~d~~~~e~~ede~yl~rLdaGLf~ 536 (607)
...+|||++||||||++|.+.+|.|+|+|||||++||+|||++++ -|....-+..++-.....-...-..--|+
T Consensus 383 t~~e~eEhv~siiaSl~~~~~~~~r~R~l~KF~End~EKvdRl~el~----lky~~~v~~~d~~~~~d~~~~dd~~~~~~ 458 (536)
T KOG2734|consen 383 SADEHEEHVCSILASLLRNLDGVHRQRLLRKFVENDFEKVDRLMELY----LKYLIKVQGIDESQKLDFIDEDDKEEKWY 458 (536)
T ss_pred cHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccccHHHHHHHHHH----HHHHHHhhhHHHHhhhccCcccchhhhHH
Confidence 368899999999999999999999999999999999999999998 55544433333111111111111235699
Q ss_pred HHHhHHHHHHHHhcCchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhcCC
Q psy11496 537 LQLVDYIIVETCAAGAATIKQRVLQIINLRGGSLKTIRHVMREYAGNLGD 586 (607)
Q Consensus 537 LQ~iD~iL~~L~~~~~~~i~~ri~~lL~~~~~~~~~I~~~l~ey~~~l~d 586 (607)
||++|.++|.+... ..|..++. .+...++.+.....++-+.
T Consensus 459 l~~l~~glF~lq~~--~lIl~e~~-------~~~~~~~~r~~~~~~~~~~ 499 (536)
T KOG2734|consen 459 LQRLDHGLFTLQRL--VLILSEVC-------ANVVTLKQRVMQILNMRGS 499 (536)
T ss_pred HHHhcccchHHHHH--HHHHHHHH-------hhhHHHHHHHHHHHHcccc
Confidence 99999999999976 57877765 2234455555555444333
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.92 E-value=0.0019 Score=82.06 Aligned_cols=248 Identities=16% Similarity=0.156 Sum_probs=168.3
Q ss_pred HHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHH
Q psy11496 130 HTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALL 209 (607)
Q Consensus 130 d~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lL 209 (607)
...+..|..|..+|.+=..|..-+++..|++||.+.++|+-.+++.-|..|++-+ .+ ...++++.+.+..|
T Consensus 381 e~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-----~e----~~~aIi~~ggIp~L 451 (2102)
T PLN03200 381 ERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-----GG----LWEALGGREGVQLL 451 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-----HH----HHHHHHHcCcHHHH
Confidence 4445556666677777777778899999999999999999999999999999753 22 35666677899999
Q ss_pred HHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHH
Q psy11496 210 VQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENR 289 (607)
Q Consensus 210 v~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~ 289 (607)
|+.|..=+ .+....+...+-|+....++....+++.+.+++|++=+... .+.-+.-|+-+|+=|-..++.++
T Consensus 452 V~LL~s~s------~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 452 ISLLGLSS------EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HHHHcCCC------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCcHHHH
Confidence 99997522 23334556677788876777778888889999999988753 23333334446666666666777
Q ss_pred HHhhccccHHHHHHHHhhhhcCCCCCh-HHHHHHHHHH--------HHHHhhhCCHh--hHH-----------------H
Q psy11496 290 KLLGDLDGIDILLQQLAYYKRHDPNTP-EEQEMMENLF--------DTLCSCLMLEE--NKE-----------------R 341 (607)
Q Consensus 290 ~~l~~~dgid~LL~~la~yrk~Dp~~~-eE~E~~eNlf--------d~L~slL~~~~--nk~-----------------~ 341 (607)
..+...++|..|++.|.. .++... .-...+.|+. ..||.+|..+. .+. .
T Consensus 524 ~iV~~aGAIppLV~LL~s---gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKN---GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 777777889888888753 233221 1112233331 11223332111 111 1
Q ss_pred h----hccchHHHHHHHHhccc-CCcCchhHHHHHhhcCCCCchhhhhHHhhhchhhhHHhhh
Q psy11496 342 F----LKGEGLQLMNLMLRERK-VSRNGSLKVLDHAICGPSGKDNANKFVDILGLRTIFPLFM 399 (607)
Q Consensus 342 F----~e~eGveLml~mL~~~k-~~r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfM 399 (607)
+ ....|++.+..+++... ..+..|..++...+++ .+++|+.+|.++|+..+..++.
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~~d~~~avv~agaIpPLV~LLs 661 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--RQDLCESLATDEIINPCIKLLT 661 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCCHHHHHHHHh
Confidence 1 13468999999999774 5577788888888774 5788999999999999865554
No 5
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.71 E-value=0.0041 Score=72.54 Aligned_cols=251 Identities=22% Similarity=0.272 Sum_probs=172.0
Q ss_pred HHHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHH
Q psy11496 129 LHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCAL 208 (607)
Q Consensus 129 Ld~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~l 208 (607)
|-..+.-|..||++|..=-.+++-|+|+.|+.+|.++|.++.+.++.+|.-|.=- .+.. +.|.+.++++-
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~------~ENK----~~m~~~giV~k 335 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF------KENK----DEMAESGIVEK 335 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC------HHHH----HHHHHcCCHHH
Confidence 3344555677899998888889999999999999999999999999999999743 1233 34456678777
Q ss_pred HHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHH--hhcCh
Q psy11496 209 LVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSIL--CQKNN 286 (607)
Q Consensus 209 Lv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Il--lq~~~ 286 (607)
|+.-+.. +....+..+|.++=||- ++|++...+++.++++-|..-++.. ....| .+++| +...+
T Consensus 336 L~kLl~s------~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~----~~~~v---al~iLy~LS~dd 401 (708)
T PF05804_consen 336 LLKLLPS------ENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDP----NFREV---ALKILYNLSMDD 401 (708)
T ss_pred HHHHhcC------CCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCC----chHHH---HHHHHHHhccCH
Confidence 7777642 12357888999999997 6999999999999999999999742 34445 46666 45567
Q ss_pred hHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhcccCCcCchh
Q psy11496 287 ENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKVSRNGSL 366 (607)
Q Consensus 287 ~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k~~r~~Al 366 (607)
++|..|+.++.+..|++.+-.. .++.. ..|.+ -.++++-..+.|-+.+++++|+..++...-..+ -.-.+
T Consensus 402 ~~r~~f~~TdcIp~L~~~Ll~~--~~~~v--~~eli----aL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~--D~lLl 471 (708)
T PF05804_consen 402 EARSMFAYTDCIPQLMQMLLEN--SEEEV--QLELI----ALLINLALNKRNAQLMCEGNGLQSLMKRALKTR--DPLLL 471 (708)
T ss_pred hhHHHHhhcchHHHHHHHHHhC--CCccc--cHHHH----HHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc--cHHHH
Confidence 8999999999999999987653 12222 23332 233444579999999999999877665432222 12235
Q ss_pred HHHHHhhcCCCCchhhhhHHhhhchhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhh
Q psy11496 367 KVLDHAICGPSGKDNANKFVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANM 426 (607)
Q Consensus 367 kvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSL 426 (607)
|++=-+..- .+.....|++..| .+-.+.+.. ...++.=+++|+++.|
T Consensus 472 KlIRNiS~h--~~~~k~~f~~~i~--~L~~~v~~~---------~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 472 KLIRNISQH--DGPLKELFVDFIG--DLAKIVSSG---------DSEEFVVECLGILANL 518 (708)
T ss_pred HHHHHHHhc--CchHHHHHHHHHH--HHHHHhhcC---------CcHHHHHHHHHHHHhc
Confidence 666555442 2356777877543 221222211 1345666677777755
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.59 E-value=0.017 Score=73.85 Aligned_cols=266 Identities=19% Similarity=0.147 Sum_probs=163.6
Q ss_pred HHHHHHHHhhcccC-CCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHH
Q psy11496 129 LHTTIQELHAIATV-PDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCA 207 (607)
Q Consensus 129 Ld~~Ik~l~~La~~-P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~ 207 (607)
....+..+..|+.+ ++....+++.|+++.|+.+|.|++..+-..++..|.=++... .++ ..++++++.+.
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-----den----r~aIieaGaIP 491 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV-----DES----KWAITAAGGIP 491 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-----HHH----HHHHHHCCCHH
Confidence 45567788888866 578899999999999999999999999988888888887531 122 34566789999
Q ss_pred HHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHH-hhhhHHHHHHHhhccCCCCcchhhHHHHHHHH-----
Q psy11496 208 LLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIG-KQGIIQWSLKRLKAKIPFDGNKLYTSEILSIL----- 281 (607)
Q Consensus 208 lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~-~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Il----- 281 (607)
.||+-|.-= +..-..++.-++-|+.. .++-+..++ ..+.++.|+.-++... ...+..|...|+-|
T Consensus 492 ~LV~LL~s~------~~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 492 PLVQLLETG------SQKAKEDSATVLWNLCC-HSEDIRACVESAGAVPALLWLLKNGG--PKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHHHcCC------CHHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccc
Confidence 999888421 12223334455666665 333333333 4456666665555421 12222233333322
Q ss_pred -----------------------------hhcChhH---HHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHH
Q psy11496 282 -----------------------------CQKNNEN---RKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTL 329 (607)
Q Consensus 282 -----------------------------lq~~~~~---~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L 329 (607)
++....+ .......+|++.|.+.+.. + +...++.... +|
T Consensus 563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s-----g-s~~ikk~Aa~---iL 633 (2102)
T PLN03200 563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS-----S-KEETQEKAAS---VL 633 (2102)
T ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC-----C-CHHHHHHHHH---HH
Confidence 2221111 1111134678888777764 1 2334444423 33
Q ss_pred Hhhh-CCHhhHHHhhccchHHHHHHHHhcccCC-cCchhHHHHHhhcCCCCchhhhhHHhhhchhhhHHhhhcCcccCcC
Q psy11496 330 CSCL-MLEENKERFLKGEGLQLMNLMLRERKVS-RNGSLKVLDHAICGPSGKDNANKFVDILGLRTIFPLFMKTPKKNRR 407 (607)
Q Consensus 330 ~slL-~~~~nk~~F~e~eGveLml~mL~~~k~~-r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfMkk~kk~kk 407 (607)
+.+- ..+++...+...+||.-++.+|+..... +..|-..+-++.++. ...++..+|+.++++.+-. +++.
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~-~~~q~~~~v~~GaV~pL~~-LL~~------ 705 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI-KENRKVSYAAEDAIKPLIK-LAKS------ 705 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCCHHHHHH-HHhC------
Confidence 4444 5677788899999999999999976532 333444444444432 3456788999999999744 3332
Q ss_pred CCcchhhhhHHHHHHHHhhhcCCCc
Q psy11496 408 KIITVEEHEEHVVSIKANMLRNCSG 432 (607)
Q Consensus 408 ~~~~~~e~~Eh~~siiaSLlr~l~~ 432 (607)
...+..++++.+++.++...++
T Consensus 706 ---~d~~v~e~Al~ALanLl~~~e~ 727 (2102)
T PLN03200 706 ---SSIEVAEQAVCALANLLSDPEV 727 (2102)
T ss_pred ---CChHHHHHHHHHHHHHHcCchH
Confidence 2367778888888888877653
No 7
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.45 E-value=0.037 Score=64.82 Aligned_cols=264 Identities=17% Similarity=0.201 Sum_probs=167.6
Q ss_pred HHHHHhhcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHH
Q psy11496 132 TIQELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQ 211 (607)
Q Consensus 132 ~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~ 211 (607)
.+.-|.-||.+++-=..+++.|+|+.|+.||..+|.|..-.++.+|.-|+-.. .+-..|+..+++.-||+
T Consensus 310 ~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~----------~~R~~mV~~GlIPkLv~ 379 (708)
T PF05804_consen 310 AVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP----------ELRSQMVSLGLIPKLVE 379 (708)
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH----------HHHHHHHHCCCcHHHHH
Confidence 45677778888888889999999999999999999999999999999998642 22457888899999998
Q ss_pred hhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHH--hhcChhHH
Q psy11496 212 NLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSIL--CQKNNENR 289 (607)
Q Consensus 212 nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Il--lq~~~~~~ 289 (607)
-|. +. +-.+.++.++-||.- ++..-..++.+.-++++++-+-... . +.+ ..|+++.+ +..++.|+
T Consensus 380 LL~--d~------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~-~--~~v-~~eliaL~iNLa~~~rna 446 (708)
T PF05804_consen 380 LLK--DP------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENS-E--EEV-QLELIALLINLALNKRNA 446 (708)
T ss_pred HhC--CC------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCC-C--ccc-cHHHHHHHHHHhcCHHHH
Confidence 884 11 122458999999985 6665566766667788877766531 1 111 12444444 67888999
Q ss_pred HHhhccccHHHHHHHHhhh------------hcCCCC-----------------ChHHHHHHHHHHHHHHhhhCCHhhHH
Q psy11496 290 KLLGDLDGIDILLQQLAYY------------KRHDPN-----------------TPEEQEMMENLFDTLCSCLMLEENKE 340 (607)
Q Consensus 290 ~~l~~~dgid~LL~~la~y------------rk~Dp~-----------------~~eE~E~~eNlfd~L~slL~~~~nk~ 340 (607)
+.+.+-+|+..|+.+.-.+ -.|+|+ .+++.+++-+++-+|+++-....+-.
T Consensus 447 qlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~ 526 (708)
T PF05804_consen 447 QLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWA 526 (708)
T ss_pred HHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHH
Confidence 8888878887775543211 112211 12345666666666666665444555
Q ss_pred Hhhc-cchHHHHHHHHhcccCCcCchhHHHHHhhcCCCCchhhhhHHhhhch-hhhHHhhhcCcccCcCCCcchhhhhHH
Q psy11496 341 RFLK-GEGLQLMNLMLRERKVSRNGSLKVLDHAICGPSGKDNANKFVDILGL-RTIFPLFMKTPKKNRRKIITVEEHEEH 418 (607)
Q Consensus 341 ~F~e-~eGveLml~mL~~~k~~r~~AlkvlD~al~~~~~~~~c~kFVe~~GL-k~lF~lfMkk~kk~kk~~~~~~e~~Eh 418 (607)
++++ ..=++.+..+|+++.....-.+.+.=. +......+.|..++-..|+ .++..+|..| .+..|.
T Consensus 527 ~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~-~gtla~d~~~A~lL~~sgli~~Li~LL~~k-----------qeDdE~ 594 (708)
T PF05804_consen 527 QLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL-LGTLASDPECAPLLAKSGLIPTLIELLNAK-----------QEDDEI 594 (708)
T ss_pred HHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH-HHHHHCCHHHHHHHHhCChHHHHHHHHHhh-----------CchHHH
Confidence 5554 344566666666543222222333211 1111235577777776775 5555655432 356677
Q ss_pred HHHHHHhhhcCC
Q psy11496 419 VVSIKANMLRNC 430 (607)
Q Consensus 419 ~~siiaSLlr~l 430 (607)
++-|++...+.+
T Consensus 595 VlQil~~f~~ll 606 (708)
T PF05804_consen 595 VLQILYVFYQLL 606 (708)
T ss_pred HHHHHHHHHHHH
Confidence 777766554443
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.87 E-value=0.013 Score=50.41 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=83.0
Q ss_pred HHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhh
Q psy11496 148 LLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGV 227 (607)
Q Consensus 148 ~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV 227 (607)
++++.|+++.|+.+|.|.|.++...++..|..++... ++. ...+++.++++.+++.|.. .+..-+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-----~~~----~~~~~~~~~i~~l~~~l~~------~~~~v~ 66 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN-----NDN----IQAVVEAGGLPALVQLLKS------EDEEVV 66 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-----HHH----HHHHHHCCChHHHHHHHhC------CCHHHH
Confidence 5789999999999999999999999999999999762 122 3344566888888887742 345777
Q ss_pred hhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhcc
Q psy11496 228 HNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAK 264 (607)
Q Consensus 228 ~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~ 264 (607)
.+++..+-||....|.....+.+.++++.+++.++..
T Consensus 67 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 8999999999997777777788888999999999864
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.87 E-value=0.086 Score=59.23 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=120.2
Q ss_pred HHHHhhcccCCC-chHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHH
Q psy11496 133 IQELHAIATVPD-LYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQ 211 (607)
Q Consensus 133 Ik~l~~La~~P~-LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~ 211 (607)
++.+.-++++++ ....++..+.++.++.+|.|+|+.++..++.+|..+.... .+ .+.++++.+..-|.+
T Consensus 98 l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~------~~----~~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 98 LKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP------EG----LEQLFDSNLLSKLKS 167 (503)
T ss_pred HHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc------hh----HHHHhCcchHHHHHH
Confidence 444566667775 4777888999999999999999999999999999998642 22 234556566555555
Q ss_pred hhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHH
Q psy11496 212 NLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKL 291 (607)
Q Consensus 212 nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~ 291 (607)
.+.+=++ ..-+.++.++=++....|+....+.+.++++.+++-++.++.. =++=|.|+|+-|.+ ++.+...
T Consensus 168 l~~~~~~------~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiL--vqlnalell~~La~-~~~g~~y 238 (503)
T PF10508_consen 168 LMSQSSD------IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDIL--VQLNALELLSELAE-TPHGLQY 238 (503)
T ss_pred HHhccCH------HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHH--HHHHHHHHHHHHHc-ChhHHHH
Confidence 5533222 1235677778888888999998888889999999999863211 23446688888888 7888888
Q ss_pred hhccccHHHHHHHHhhhhcCCC
Q psy11496 292 LGDLDGIDILLQQLAYYKRHDP 313 (607)
Q Consensus 292 l~~~dgid~LL~~la~yrk~Dp 313 (607)
+.+.++++.|...+..- +.||
T Consensus 239 L~~~gi~~~L~~~l~~~-~~dp 259 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDS-EEDP 259 (503)
T ss_pred HHhCCHHHHHHHHHhcc-ccCC
Confidence 88888899999988874 5777
No 10
>KOG4199|consensus
Probab=96.72 E-value=0.099 Score=56.62 Aligned_cols=242 Identities=14% Similarity=0.220 Sum_probs=160.1
Q ss_pred HHHHHHHhhcccCCCc-hHHHHhcCChHHHHHhhccCC-chhHHHHHHHhhhhcccccc-cc---chhhHHHHHHHHHhc
Q psy11496 130 HTTIQELHAIATVPDL-YPLLVQLKAVSSMLELVLHEN-TDIAVAVVDLLQELTDVDVL-NE---SEEGTESLLTALLDQ 203 (607)
Q Consensus 130 d~~Ik~l~~La~~P~L-Yp~~v~l~~v~sL~~LLsHeN-tDIai~vi~lL~ELtD~d~~-~e---~~e~~~~lv~aL~e~ 203 (607)
+..|+-+.--+..-+. -..|++++....+.+-|.|+- +|.+-+..+.|.=|+-+|.. -. ..+.+..++ ..
T Consensus 165 ~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia----~e 240 (461)
T KOG4199|consen 165 LLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIA----KE 240 (461)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHH----Hh
Confidence 4445544444444444 667899999999998887665 55888888888877655443 11 122233333 22
Q ss_pred chHHHHHHhhhhc-cCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHH-
Q psy11496 204 QVCALLVQNLERL-DETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSIL- 281 (607)
Q Consensus 204 ~l~~lLv~nL~Rl-dE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Il- 281 (607)
.++..|+.-|.-. |...=.+..+-..+|+ ++.++|..+++.+=+.-|++-|... .-++|+-.+-+.|+.|
T Consensus 241 ~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA-------Vr~E~C~~I~e~GGl~tl~~~i~d~-n~~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 241 GILTALTEALQAGIDPDSLVSLSTTLKALA-------VRDEICKSIAESGGLDTLLRCIDDS-NEQGNRTLAKTCLSLLR 312 (461)
T ss_pred hhHHHHHHHHHccCCccHHHHHHHHHHHHH-------HHHHHHHHHHHccCHHHHHHHHhhh-chhhHHHHHHHHHHHHH
Confidence 3555566666433 3322344444444443 5888999999988888888888864 3678887888889998
Q ss_pred -hhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHHHHHhccc
Q psy11496 282 -CQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMNLMLRERK 359 (607)
Q Consensus 282 -lq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml~mL~~~k 359 (607)
+..+.++...+++.+|.|.+.+.+-++. -||..- +.+.-|+|.+- -+|+|-.+|.++-|-++.++-|+..-
T Consensus 313 alAG~DsvKs~IV~~gg~~~ii~l~~~h~-~~p~Vi------~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 313 ALAGSDSVKSTIVEKGGLDKIITLALRHS-DDPLVI------QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP 385 (461)
T ss_pred HHhCCCchHHHHHHhcChHHHHHHHHHcC-CChHHH------HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc
Confidence 7889999999999999999999887753 344433 33344555554 59999999999999999999998652
Q ss_pred ----CCcCchhHHHHHhhcCCCCchhhhhHHhhhchhhh
Q psy11496 360 ----VSRNGSLKVLDHAICGPSGKDNANKFVDILGLRTI 394 (607)
Q Consensus 360 ----~~r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~l 394 (607)
..|..+--+=+.+. .+.++|+-.+ +.|++-+
T Consensus 386 ~~a~vQrnac~~IRNiv~---rs~~~~~~~l-~~GiE~L 420 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVV---RSAENRTILL-ANGIEKL 420 (461)
T ss_pred HHHHHHHHHHHHHHHHHH---hhhhccchHH-hccHHHH
Confidence 22333322223332 3566777666 4577775
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.63 E-value=0.41 Score=53.90 Aligned_cols=212 Identities=12% Similarity=0.147 Sum_probs=137.6
Q ss_pred hHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhh
Q psy11496 146 YPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESD 225 (607)
Q Consensus 146 Yp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~ 225 (607)
+|.-+--+..+-|...|.|+|..|-.-++..|.-+... ....+..+.+++++.++++.|.-= |-.
T Consensus 70 ~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~---------~~~~~~~~~~~~l~~~i~~~L~~~------d~~ 134 (503)
T PF10508_consen 70 SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH---------SEGAAQLLVDNELLPLIIQCLRDP------DLS 134 (503)
T ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---------CHHHHHHhcCccHHHHHHHHHcCC------cHH
Confidence 44444556678889999999999999888877665432 123567777889999998888322 223
Q ss_pred hhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHHHHH
Q psy11496 226 GVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQL 305 (607)
Q Consensus 226 gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~l 305 (607)
--..+..++.+|... +...+.+....++.-|.+-+....+.-+-++| |++.-+...|++....+.+.+.++.++.-+
T Consensus 135 Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~--el~v~i~~~S~~~~~~~~~sgll~~ll~eL 211 (503)
T PF10508_consen 135 VAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVY--ELLVEIASHSPEAAEAVVNSGLLDLLLKEL 211 (503)
T ss_pred HHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHH--HHHHHHHhcCHHHHHHHHhccHHHHHHHHh
Confidence 334567788888874 44444565555555554444442333355666 688888888888888777655566666544
Q ss_pred hhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhcccCCc-Cc------hhHHHHHhhcCCCC
Q psy11496 306 AYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKVSR-NG------SLKVLDHAICGPSG 378 (607)
Q Consensus 306 a~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k~~r-~~------AlkvlD~al~~~~~ 378 (607)
+..|.-. --|+.++|..+...+.|..-+.+...++.+..++...+.++ .+ .++-|..+... ..
T Consensus 212 ---~~dDiLv------qlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~ 281 (503)
T PF10508_consen 212 ---DSDDILV------QLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SP 281 (503)
T ss_pred ---cCccHHH------HHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-Ch
Confidence 3333221 23778888888888888777777777788999998876555 33 35666665553 33
Q ss_pred chhhhhH
Q psy11496 379 KDNANKF 385 (607)
Q Consensus 379 ~~~c~kF 385 (607)
+..|..|
T Consensus 282 ~~v~~~~ 288 (503)
T PF10508_consen 282 QEVLELY 288 (503)
T ss_pred HHHHHHH
Confidence 4445444
No 12
>KOG2160|consensus
Probab=96.44 E-value=0.13 Score=55.67 Aligned_cols=186 Identities=19% Similarity=0.239 Sum_probs=126.7
Q ss_pred hhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHH
Q psy11496 223 ESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILL 302 (607)
Q Consensus 223 e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL 302 (607)
+-+-..-+|.-+|-+++ +=+.|..+++.+.+.-++.-++.. ...-+.+|+-+++-..|++|..++.+-+.+|...|+
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~--~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENS--DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 33444445555666665 556788899987777777766543 445688999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCChHHHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHHHHHhccc---CCcCchhHHHHHhhcCCCC
Q psy11496 303 QQLAYYKRHDPNTPEEQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMNLMLRERK---VSRNGSLKVLDHAICGPSG 378 (607)
Q Consensus 303 ~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml~mL~~~k---~~r~~AlkvlD~al~~~~~ 378 (607)
+.++. -+|... --+++=++||++ ..+++..+|....|.+.+...|..+. +.+.-|..++..++...
T Consensus 173 ~~ls~---~~~~~~-----r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-- 242 (342)
T KOG2160|consen 173 KILSS---DDPNTV-----RTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-- 242 (342)
T ss_pred HHHcc---CCCchH-----HHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh--
Confidence 99983 333322 123455678888 69999999999999999999999853 45666899999999843
Q ss_pred chhhhhHHhhhchhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhhcCCC
Q psy11496 379 KDNANKFVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCS 431 (607)
Q Consensus 379 ~~~c~kFVe~~GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l~ 431 (607)
...+. ++...|.....--+-. .-..+.-|+++....+++....
T Consensus 243 ~s~~d-~~~~~~f~~~~~~l~~---------~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 243 KSDED-IASSLGFQRVLENLIS---------SLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhhh-HHHHhhhhHHHHHHhh---------ccchhhhHHHHHHHHHHHHHHh
Confidence 44444 4333333322111110 1234556667666666655443
No 13
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.88 E-value=0.14 Score=53.68 Aligned_cols=217 Identities=19% Similarity=0.180 Sum_probs=122.4
Q ss_pred HHHHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhh------hhHHHHHHHhhccCCCCcchhhHHHHHH
Q psy11496 206 CALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQ------GIIQWSLKRLKAKIPFDGNKLYTSEILS 279 (607)
Q Consensus 206 ~~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~------~LL~wLL~Rl~~~~~~D~Nk~YasEiL~ 279 (607)
..++++-|..+ -...+-|.++|.+|..|++-+|+.++.+... ..+..+++-++.. -..-..-|+.+|+
T Consensus 57 ~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~--D~~i~~~a~~iLt 130 (312)
T PF03224_consen 57 ASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN--DSFIQLKAAFILT 130 (312)
T ss_dssp -----HHHHHH-------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 45566666655 2345678899999999999999888887761 2566667644432 2234555778899
Q ss_pred HHhhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhccc
Q psy11496 280 ILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERK 359 (607)
Q Consensus 280 Illq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k 359 (607)
.|+-.++....... .+-+.++++.++. -..+...++..-...||+.+|..++.|..|.+.+||..+..+|+...
T Consensus 131 ~Ll~~~~~~~~~~~-~~~l~~ll~~L~~-----~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 131 SLLSQGPKRSEKLV-KEALPKLLQWLSS-----QLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQA 204 (312)
T ss_dssp HHHTSTTT--HHHH-HHHHHHHHHHHH------TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---
T ss_pred HHHHcCCccccchH-HHHHHHHHHHHHH-----hhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhc
Confidence 99866665544333 2335666666665 23456777777889999999999999999999999999999995322
Q ss_pred --CCcCc------hhHHHHHhhcCCCCchhhhhHHhhhchhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhhcCCC
Q psy11496 360 --VSRNG------SLKVLDHAICGPSGKDNANKFVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCS 431 (607)
Q Consensus 360 --~~r~~------AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l~ 431 (607)
....+ ++=++..++ -.++.+..|+... +++.++.--+...| ++..-=+++++..++...+
T Consensus 205 ~~~~~~~~Ql~Y~~ll~lWlLS---F~~~~~~~~~~~~----~i~~L~~i~~~~~K-----EKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 205 TNSNSSGIQLQYQALLCLWLLS---FEPEIAEELNKKY----LIPLLADILKDSIK-----EKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp ------HHHHHHHHHHHHHHHT---TSHHHHHHHHTTS----HHHHHHHHHHH--S-----HHHHHHHHHHHHHTTSSSS
T ss_pred ccCCCCchhHHHHHHHHHHHHh---cCHHHHHHHhccc----hHHHHHHHHHhccc-----chHHHHHHHHHHHHHhccH
Confidence 11111 455555443 3577888887776 33444421111111 3333333444444443333
Q ss_pred chhhHHHHHHHhhcchhhH
Q psy11496 432 GPQRQRLLSKFTENDHEKV 450 (607)
Q Consensus 432 ~~~r~Rll~KFvE~~~eK~ 450 (607)
.. .+.-.+.++..|+
T Consensus 273 ~~----~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 273 KS----NIELMVLCGLLKT 287 (312)
T ss_dssp TT----HHHHHHHH-HHHH
T ss_pred HH----HHHHHHHccHHHH
Confidence 22 5556666666666
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.47 E-value=0.24 Score=42.50 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=78.4
Q ss_pred HHhcchHHHHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHH
Q psy11496 200 LLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILS 279 (607)
Q Consensus 200 L~e~~l~~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~ 279 (607)
+++.+++..|++.|..-+ ......++..+-|+....|+....+.+.+.++++++-++.. ...-..+|.-+|+
T Consensus 3 ~~~~~~i~~l~~~l~~~~------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~ 74 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD------ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALR 74 (120)
T ss_pred HHHcCChHHHHHHHHcCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 345667777777774222 56778889999999987799999999889999999998863 3345556667788
Q ss_pred HHhhcChhHHHHhhccccHHHHHHHHhh
Q psy11496 280 ILCQKNNENRKLLGDLDGIDILLQQLAY 307 (607)
Q Consensus 280 Illq~~~~~~~~l~~~dgid~LL~~la~ 307 (607)
-|.++.+..+..+.+.+++..|++.+..
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhc
Confidence 8888888888888888889999998875
No 15
>KOG4199|consensus
Probab=95.25 E-value=2.9 Score=45.74 Aligned_cols=267 Identities=16% Similarity=0.185 Sum_probs=162.4
Q ss_pred CCchhhhhc-HHhHHHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccCCchhH-----HHHHHHhhhhccccccccch
Q psy11496 117 DNAEKFMES-EIELHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIA-----VAVVDLLQELTDVDVLNESE 190 (607)
Q Consensus 117 d~P~KFmdS-E~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIa-----i~vi~lL~ELtD~d~~~e~~ 190 (607)
+...||..- -.+++.-|-.|. ++++|+.-|.|-.|.++.++ .|--.|.- .-|+.+|..=.|+..+....
T Consensus 93 ~~A~r~la~~~ga~~~~it~~~-la~~~~~~~l~ksL~al~~l----t~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~ 167 (461)
T KOG4199|consen 93 SLAHRVLAGKNGAHDALITLLE-LAESPNESVLKKSLEAINSL----THKQPDLFDAEAMAVVLKLLALKVESEEVTLLT 167 (461)
T ss_pred hHHHHHHhccCCCcchhhhHHH-HhhCCchhHHHHHHHHHHHh----hcCCcchhccccHHHHHHHHhcccchHHHHHHH
Confidence 334444433 356777777777 69999999999888877654 57777763 33445554333322211111
Q ss_pred hhH--------HHHHHHHHhcchHHHHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCCh------hHHHHHHhhhhHHH
Q psy11496 191 EGT--------ESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKP------DVIHDIGKQGIIQW 256 (607)
Q Consensus 191 e~~--------~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p------~~~~~l~~~~LL~w 256 (607)
=+| +.-=.-+|+.++++|+.|-|.|=--+ .--...|.++-++=.==+|+- .-+..+++.+.+.-
T Consensus 168 ~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~--~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~ 245 (461)
T KOG4199|consen 168 LQWLQKACIMHEVNRQLFMELKILELILQVLNREGKT--RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTA 245 (461)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCcc--HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHH
Confidence 112 12235567889999999988664332 222333433332211111221 12445666556666
Q ss_pred HHHHhhccCCCCcchhhHHHHHHHH--hhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhC
Q psy11496 257 SLKRLKAKIPFDGNKLYTSEILSIL--CQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLM 334 (607)
Q Consensus 257 LL~Rl~~~~~~D~Nk~YasEiL~Il--lq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~ 334 (607)
|..-++.- .|.+-+- +.+.-| +.-+.+..+.+.+.+|++.|+..++- .+..+..+..-.+...|-.+.-
T Consensus 246 L~Eal~A~--~dp~~L~--~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d-----~n~~~~r~l~k~~lslLralAG 316 (461)
T KOG4199|consen 246 LTEALQAG--IDPDSLV--SLSTTLKALAVRDEICKSIAESGGLDTLLRCIDD-----SNEQGNRTLAKTCLSLLRALAG 316 (461)
T ss_pred HHHHHHcc--CCccHHH--HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhh-----hchhhHHHHHHHHHHHHHHHhC
Confidence 66666543 3444333 232222 23345667777889999999999985 4556677777777666666667
Q ss_pred CHhhHHHhhccchHHHHHHHHhcccCCcCc---hhHHHHHhhcCCCCchhhhhHHhhhchhhhHHhhhcCc
Q psy11496 335 LEENKERFLKGEGLQLMNLMLRERKVSRNG---SLKVLDHAICGPSGKDNANKFVDILGLRTIFPLFMKTP 402 (607)
Q Consensus 335 ~~~nk~~F~e~eGveLml~mL~~~k~~r~~---AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfMkk~ 402 (607)
+..+|...++..|.+-++.++-+.-.++.- +.-++-++|. ..|++..+|+|++|-.... .-||..
T Consensus 317 ~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L--R~pdhsa~~ie~G~a~~av-qAmkah 384 (461)
T KOG4199|consen 317 SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCL--RSPDHSAKAIEAGAADLAV-QAMKAH 384 (461)
T ss_pred CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh--cCcchHHHHHhcchHHHHH-HHHHhC
Confidence 999999999999999998877665444433 3334444443 5699999999999988874 446643
No 16
>KOG0166|consensus
Probab=94.78 E-value=0.89 Score=51.69 Aligned_cols=235 Identities=17% Similarity=0.164 Sum_probs=152.1
Q ss_pred HHHHHHHHhhcccCCCchHHHHhc-CChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHH
Q psy11496 129 LHTTIQELHAIATVPDLYPLLVQL-KAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCA 207 (607)
Q Consensus 129 Ld~~Ik~l~~La~~P~LYp~~v~l-~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~ 207 (607)
+....=.|+-|..+++-=|.|... .+++.|+-||-|...++..+++-.|..|||- +..-++++++.+++.
T Consensus 212 lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg---------~ne~iq~vi~~gvv~ 282 (514)
T KOG0166|consen 212 LRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG---------SNEKIQMVIDAGVVP 282 (514)
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---------ChHHHHHHHHccchH
Confidence 344555566677777666777664 6889999999999999999999999999984 445588888999999
Q ss_pred HHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChh
Q psy11496 208 LLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNE 287 (607)
Q Consensus 208 lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~ 287 (607)
.||..|.--.-. -+--+|-.+=|++.-....+..+...++|+-|..=+... +-+.-+-=|+=++|=+...+++
T Consensus 283 ~LV~lL~~~~~~------v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s-~~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 283 RLVDLLGHSSPK------VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS-PKESIKKEACWTISNITAGNQE 355 (514)
T ss_pred HHHHHHcCCCcc------cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC-cchhHHHHHHHHHHHhhcCCHH
Confidence 999999655443 234456677787776666677777778877777666642 2232233233356666666776
Q ss_pred HHHHhhccccHHHHHHHHhhhhc--C---------CCCC-h-HHHHHH--HHHHHHHHhhhCCHhhHHHhhccchHHHHH
Q psy11496 288 NRKLLGDLDGIDILLQQLAYYKR--H---------DPNT-P-EEQEMM--ENLFDTLCSCLMLEENKERFLKGEGLQLMN 352 (607)
Q Consensus 288 ~~~~l~~~dgid~LL~~la~yrk--~---------Dp~~-~-eE~E~~--eNlfd~L~slL~~~~nk~~F~e~eGveLml 352 (607)
-.+.+...+.+.+|+..++..-- + =..+ . +=..|| .++..-||.+|..++.+..-.-.+|++.|+
T Consensus 356 qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 66666677888888887765320 0 0011 1 111111 234455666666666655555566666666
Q ss_pred HHHhcccCCcCchhHHHHHhhcCCCCchhhhhHHhhhchhhh
Q psy11496 353 LMLRERKVSRNGSLKVLDHAICGPSGKDNANKFVDILGLRTI 394 (607)
Q Consensus 353 ~mL~~~k~~r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~l 394 (607)
++-..++...+ ...|...-+++|++.+
T Consensus 436 ~~~e~~~~~~~---------------n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 436 KVGEAEKNRGT---------------NPLAIMIEEAGGLDKI 462 (514)
T ss_pred HHHHHhccccc---------------cHHHHHHHHccChhHH
Confidence 55444332211 3467778888898887
No 17
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.58 E-value=1.8 Score=45.46 Aligned_cols=226 Identities=19% Similarity=0.185 Sum_probs=122.2
Q ss_pred HHHHHhhcc--CCchhHHHHHHHhhhhccccccccchhhHHHHHHHHH--hcchHHHHHHhhhhccCCchhhhhhhhhhH
Q psy11496 156 SSMLELVLH--ENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALL--DQQVCALLVQNLERLDETVKEESDGVHNTL 231 (607)
Q Consensus 156 ~sL~~LLsH--eNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~--e~~l~~lLv~nL~RldE~~~~e~~gV~~~L 231 (607)
..++.||.+ .|.|+.--++.++.||...+.. ....+...-. +...+..+..-+ +.+ |..=.+.++
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~-----~~~~~~~~~~~~~~~~~~~fl~ll----~~~--D~~i~~~a~ 126 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS-----RVELFLELAKQDDSDPYSPFLKLL----DRN--DSFIQLKAA 126 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSS-----SHHHHHHHHH-TTH--HHHHHHH-----S-S--SHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH-----HHHHHHHhcccccchhHHHHHHHh----cCC--CHHHHHHHH
Confidence 444566655 4899999999999999987641 2222322211 112334444322 222 555666677
Q ss_pred HHhhhhhcCChhHHHHHHh---hhhHHHHHHHhhccCCCCcch-hhHHHHHHHHhhcChhHHHHhhccccHHHHHHHHhh
Q psy11496 232 GIFENLCELKPDVIHDIGK---QGIIQWSLKRLKAKIPFDGNK-LYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAY 307 (607)
Q Consensus 232 ~iiENl~e~~p~~~~~l~~---~~LL~wLL~Rl~~~~~~D~Nk-~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la~ 307 (607)
-++=+++...|.-.....+ ..+++|+-+.++.. |.+- ..|...|+.|+ ..+..|..+.+.+|+..|...+..
T Consensus 127 ~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~---~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~ 202 (312)
T PF03224_consen 127 FILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSS---DSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRK 202 (312)
T ss_dssp HHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HH---HH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCC---CcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHh
Confidence 7888888776665444221 34566666544331 1122 44556677777 579999999999999999998853
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhcccCCcCc--hhHHHHHhhcCCCCchhhhhH
Q psy11496 308 YKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKVSRNG--SLKVLDHAICGPSGKDNANKF 385 (607)
Q Consensus 308 yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k~~r~~--AlkvlD~al~~~~~~~~c~kF 385 (607)
.... ...-..|...++.=|+=.+=.+++....|.+..=|-.+..+++.-...|-- ++-+|=-+++. +...++...
T Consensus 203 ~~~~--~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~-~~~~~~~~m 279 (312)
T PF03224_consen 203 QATN--SNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK-APKSNIELM 279 (312)
T ss_dssp ----------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS-SSTTHHHHH
T ss_pred hccc--CCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence 2211 233466777677533333335888888887766555666666654322211 33333333332 122388899
Q ss_pred HhhhchhhhHHhhhc
Q psy11496 386 VDILGLRTIFPLFMK 400 (607)
Q Consensus 386 Ve~~GLk~lF~lfMk 400 (607)
|+..+++++ ..+..
T Consensus 280 v~~~~l~~l-~~L~~ 293 (312)
T PF03224_consen 280 VLCGLLKTL-QNLSE 293 (312)
T ss_dssp HHH-HHHHH-HHHHS
T ss_pred HHccHHHHH-HHHhc
Confidence 999999998 55554
No 18
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.57 E-value=0.48 Score=49.49 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHHHHHhcccCC--cCchhHHHHHhhcCCCCchhhhhHHhhhchhhh
Q psy11496 318 EQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMNLMLRERKVS--RNGSLKVLDHAICGPSGKDNANKFVDILGLRTI 394 (607)
Q Consensus 318 E~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml~mL~~~k~~--r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~l 394 (607)
....+.|.++.|--++ ..|+-|..|....++++++.+|...... ...++..|=|++ .++|.|+..|-+..|+.++
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iL--ld~p~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCIL--LDSPENQRDFEELNGLSTV 181 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHH--HcChHHHHHHHHhCCHHHH
Confidence 3333557667775554 7999999999999999999999443311 222344444444 4889999999999999999
Q ss_pred HHhhhcC
Q psy11496 395 FPLFMKT 401 (607)
Q Consensus 395 F~lfMkk 401 (607)
..+|-.+
T Consensus 182 ~~llk~~ 188 (257)
T PF08045_consen 182 CSLLKSK 188 (257)
T ss_pred HHHHccc
Confidence 7765543
No 19
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.43 E-value=0.31 Score=50.91 Aligned_cols=90 Identities=26% Similarity=0.386 Sum_probs=66.8
Q ss_pred HHHHHHhhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHHHH
Q psy11496 276 EILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMNLM 354 (607)
Q Consensus 276 EiL~Illq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml~m 354 (607)
.+|.=++...|..+..++...+|..||..++. ..+-+.. -.+.++|.++| .+|+|...|-+.+|++....+
T Consensus 113 ~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~------~~~~~i~--~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 113 RVLQGLCLLHPPSRKLFHREQNMELLLDLLSP------SNPPAIQ--SACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHcCchHHHHHhhhhhHHHHHHHhcc------CCCchHH--HHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 44444478889999999999999999999933 2222222 23566666666 799999999999999999999
Q ss_pred HhcccCCcCchhHHHHHhh
Q psy11496 355 LRERKVSRNGSLKVLDHAI 373 (607)
Q Consensus 355 L~~~k~~r~~AlkvlD~al 373 (607)
++.+-..+.-=.|+..+++
T Consensus 185 lk~~~~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLY 203 (257)
T ss_pred HccccccHHHhHHHHHHHH
Confidence 9987665555567766654
No 20
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.32 E-value=7.5 Score=43.57 Aligned_cols=336 Identities=16% Similarity=0.183 Sum_probs=179.8
Q ss_pred ChHHHHHhhc-cCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHH-hcchHHHHHHhhhhccCCchhhhhhhhhhH
Q psy11496 154 AVSSMLELVL-HENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALL-DQQVCALLVQNLERLDETVKEESDGVHNTL 231 (607)
Q Consensus 154 ~v~sL~~LLs-HeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~-e~~l~~lLv~nL~RldE~~~~e~~gV~~~L 231 (607)
++..+++||+ -.|.|+.--|+.++.||...+ ..-+..|.+... ..+.....+.-|. .+|.-=++.++
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-----~~~~~~f~~~~~~~~~~~~~fl~lL~------~~d~~i~~~a~ 122 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-----DTRVKLFHDDALLKKKTWEPFFNLLN------RQDQFIVHMSF 122 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-----hHHHHHHHHHhhccccchHHHHHHHc------CCchhHHHHHH
Confidence 4566777885 467899999999999998874 223344444322 1233444444332 12444556777
Q ss_pred HHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhh-HHHHHHHHhhcChhHHHHhhccccHHHHHHHHhhhhc
Q psy11496 232 GIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLY-TSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKR 310 (607)
Q Consensus 232 ~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~Y-asEiL~Illq~~~~~~~~l~~~dgid~LL~~la~yrk 310 (607)
.++-.++...|.-........+++|+.+.++.. .+.+.+| |...|+.||. .+..|..+.+.+|+..|...|+...
T Consensus 123 ~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~- 198 (429)
T cd00256 123 SILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNAT- 198 (429)
T ss_pred HHHHHHHhcCccccchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhcc-
Confidence 777788876665333333334888999888753 2334443 2344666554 5788999998889999999886521
Q ss_pred CCCCChHHHHHHHHHHHHHHhhh--CCHhhHHHhhccchHHHHHHHHhcccCCcCc--h----hHHHHHhhcCCCCchhh
Q psy11496 311 HDPNTPEEQEMMENLFDTLCSCL--MLEENKERFLKGEGLQLMNLMLRERKVSRNG--S----LKVLDHAICGPSGKDNA 382 (607)
Q Consensus 311 ~Dp~~~eE~E~~eNlfd~L~slL--~~~~nk~~F~e~eGveLml~mL~~~k~~r~~--A----lkvlD~al~~~~~~~~c 382 (607)
-..|...++. +|.-+ .+++....+.+.+=|..+..+++.-...|-- + .|+++....+......+
T Consensus 199 ------~~~Ql~Y~~l--l~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~ 270 (429)
T cd00256 199 ------LGFQLQYQSI--FCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAA 270 (429)
T ss_pred ------ccHHHHHHHH--HHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence 2345555553 45544 4666666666555566666677654322211 2 44554443221122344
Q ss_pred hhHHhhhchhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhhcCCCchhhHHHHHHHhhcchhhHHHHHHhhhhhhh
Q psy11496 383 NKFVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLS 462 (607)
Q Consensus 383 ~kFVe~~GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l~~~~r~Rll~KFvE~~~eK~drL~el~~k~~~ 462 (607)
...|+...++++ ..+..+ + .+..+..|-+- .+..-+++...+ +.-|++|..
T Consensus 271 ~~mv~~~l~~~l-~~L~~r------k-~~DedL~edl~-----------------~L~e~L~~~~k~----ltsfD~Y~~ 321 (429)
T cd00256 271 LQMVQCKVLKTL-QSLEQR------K-YDDEDLTDDLK-----------------FLTEELKNSVQD----LSSFDEYKS 321 (429)
T ss_pred HHHHHcChHHHH-HHHhcC------C-CCcHHHHHHHH-----------------HHHHHHHHHHHH----cCCHHHHHH
Confidence 556665555554 444432 1 23333333221 111111111111 334566665
Q ss_pred hHHHHHHHHHhhcCC--chhhh----h-hhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhcc--chhhhHHHHhhhhcc
Q psy11496 463 KHVVSIIANMLRNCS--GPQRQ----R-LLSKFTENDHEKVDRLLELHFKYLSKVDEADKEQR--DEDEDENYLRRLEAG 533 (607)
Q Consensus 463 Ehvl~IiaSLl~~l~--s~~R~----R-lLaKFvE~dyEKvdRL~eLr~~y~~rv~~~d~~~~--e~~ede~yl~rLdaG 533 (607)
|-- -++|. ++.+. | =..||-||+|+=+.+|+++=.. .-|...- ..-+-+.|.+-...|
T Consensus 322 El~-------sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~------s~d~~~laVAc~Dige~vr~~P~g 388 (429)
T cd00256 322 ELR-------SGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET------SVDPIILAVACHDIGEYVRHYPRG 388 (429)
T ss_pred HHh-------cCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc------CCCcceeehhhhhHHHHHHHCccH
Confidence 421 13343 33332 1 3579999999999999976311 0111000 112345677777767
Q ss_pred chHHHHhHHHHHHHHhcCchhHHHHHHHHHHhcC
Q psy11496 534 LFTLQLVDYIIVETCAAGAATIKQRVLQIINLRG 567 (607)
Q Consensus 534 Lf~LQ~iD~iL~~L~~~~~~~i~~ri~~lL~~~~ 567 (607)
-..++. -|.|.+|+.|+.-.+
T Consensus 389 r~i~~~-------------lg~K~~vM~Lm~h~d 409 (429)
T cd00256 389 KDVVEQ-------------LGGKQRVMRLLNHED 409 (429)
T ss_pred HHHHHH-------------cCcHHHHHHHhcCCC
Confidence 654432 245566666655433
No 21
>KOG0166|consensus
Probab=92.66 E-value=2.2 Score=48.71 Aligned_cols=220 Identities=14% Similarity=0.174 Sum_probs=138.5
Q ss_pred HHHHHHHhhcccCC-CchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHH
Q psy11496 130 HTTIQELHAIATVP-DLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCAL 208 (607)
Q Consensus 130 d~~Ik~l~~La~~P-~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~l 208 (607)
-++--+++-|+-+| +.+...++.|.++-|+.||.|...-+...++-.+.-.+- +.+.....+++++++..
T Consensus 255 ~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt---------G~d~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 255 TDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT---------GSDEQTQVVINSGALPV 325 (514)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee---------ccHHHHHHHHhcChHHH
Confidence 34455666688665 789999999999999999999998887766665554322 22344677778899988
Q ss_pred HHHhhhhccCCchhhhhhhhh-hHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhc-Ch
Q psy11496 209 LVQNLERLDETVKEESDGVHN-TLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQK-NN 286 (607)
Q Consensus 209 Lv~nL~RldE~~~~e~~gV~~-~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~-~~ 286 (607)
|..-|.+-.+.. +.. +-=+|-|+..-.++-+..+...++++||+.-++.. +|+-.|--| =.++=+.++ ++
T Consensus 326 l~~ll~~s~~~~------ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAa-waIsN~ts~g~~ 397 (514)
T KOG0166|consen 326 LSNLLSSSPKES------IKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAA-WAISNLTSSGTP 397 (514)
T ss_pred HHHHhccCcchh------HHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHH-HHHHhhcccCCH
Confidence 877776554431 111 33456788888999999999999999999999874 476655432 123333433 33
Q ss_pred hHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhh---------HHHhhccchHHHHHHHHhc
Q psy11496 287 ENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEEN---------KERFLKGEGLQLMNLMLRE 357 (607)
Q Consensus 287 ~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~n---------k~~F~e~eGveLml~mL~~ 357 (607)
+--.-+++.+-|.-|-..|. .. | - ..+..++|+|..+|...+. -...-+++|+|.|-.+=..
T Consensus 398 ~qi~yLv~~giI~plcdlL~-~~--D-----~-~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~h 468 (514)
T KOG0166|consen 398 EQIKYLVEQGIIKPLCDLLT-CP--D-----V-KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSH 468 (514)
T ss_pred HHHHHHHHcCCchhhhhccc-CC--C-----h-HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcc
Confidence 34445556555666655552 22 1 1 1255677888877743332 2334567777766443322
Q ss_pred cc-CCcCchhHHHHHhhcC
Q psy11496 358 RK-VSRNGSLKVLDHAICG 375 (607)
Q Consensus 358 ~k-~~r~~AlkvlD~al~~ 375 (607)
-. --+..|.+++|.=.+.
T Consensus 469 en~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 469 ENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred ccHHHHHHHHHHHHHhcCC
Confidence 22 2244467777765553
No 22
>KOG1048|consensus
Probab=91.62 E-value=4.7 Score=47.66 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=92.6
Q ss_pred hcHHhHHHHHHHHhhcccCCC------chH------------HHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccc
Q psy11496 124 ESEIELHTTIQELHAIATVPD------LYP------------LLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDV 185 (607)
Q Consensus 124 dSE~dLd~~Ik~l~~La~~P~------LYp------------~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~ 185 (607)
-...+|.+.|+=|. +..|. -|- .--++|++.-||+||.|+|.++--.|.--|+-|.....
T Consensus 230 w~d~~lpe~i~mL~--~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLM--SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHh--ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccC
Confidence 55667777776665 33343 121 22358999999999999999999999999999988765
Q ss_pred cccchhhHHHHHHHHHhcchHHHHHHhhhhc-cCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhcc
Q psy11496 186 LNESEEGTESLLTALLDQQVCALLVQNLERL-DETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAK 264 (607)
Q Consensus 186 ~~e~~e~~~~lv~aL~e~~l~~lLv~nL~Rl-dE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~ 264 (607)
..+.. -++.+++.+-.+|+-|-+. |.+..+... +++=||-+ ...+...+....+- -|..++-.+
T Consensus 308 ~~~NK-------lai~~~~Gv~~l~~~Lr~t~D~ev~e~iT------g~LWNLSS-~D~lK~~ii~~al~-tLt~~vI~P 372 (717)
T KOG1048|consen 308 TDSNK-------LAIKELNGVPTLVRLLRHTQDDEVRELIT------GILWNLSS-NDALKMLIITSALS-TLTDNVIIP 372 (717)
T ss_pred Ccccc-------hhhhhcCChHHHHHHHHhhcchHHHHHHH------HHHhcccc-hhHHHHHHHHHHHH-HHHHhhccc
Confidence 43211 1233445555555655442 221222222 55666666 23333333333222 222222221
Q ss_pred ------CCCCcchhhHHHH----HHHH---hhcChhHHHHhhcccc-HHHHHHHHhhh
Q psy11496 265 ------IPFDGNKLYTSEI----LSIL---CQKNNENRKLLGDLDG-IDILLQQLAYY 308 (607)
Q Consensus 265 ------~~~D~Nk~YasEi----L~Il---lq~~~~~~~~l~~~dg-id~LL~~la~y 308 (607)
.++. ++..-+++ =++| ..-+.+-|+++.+.+| ||.|+-.+...
T Consensus 373 ~Sgw~~~~~~-~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 373 HSGWEEEPAP-RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred ccccCCCCcc-cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence 1222 12211122 2233 2336678999998877 99998877643
No 23
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.55 E-value=0.16 Score=37.70 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=34.4
Q ss_pred CCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhcc
Q psy11496 143 PDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTD 182 (607)
Q Consensus 143 P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD 182 (607)
|+.-..+++.|+++.|+.||.|+|.++...++-.|..|++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3444678999999999999999999999999988887763
No 24
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.16 E-value=5.6 Score=47.81 Aligned_cols=63 Identities=22% Similarity=0.428 Sum_probs=52.8
Q ss_pred HhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhc
Q psy11496 291 LLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRE 357 (607)
Q Consensus 291 ~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~ 357 (607)
.+.+.+|++.||++|+..+ | .+...+.+..++..|-.+...+.||.++++..|+..||..++.
T Consensus 112 v~~~~gGL~~ll~~l~~~~--~--~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~ 174 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIR--D--FSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNR 174 (802)
T ss_pred HhhcCCCHHHHHHHHHhhc--c--ccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467899999999999876 3 3336788888888899899899999999999999999987763
No 25
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.99 E-value=0.56 Score=44.74 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=76.5
Q ss_pred hhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcCh-hHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH
Q psy11496 252 GIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNN-ENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLC 330 (607)
Q Consensus 252 ~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~-~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~ 330 (607)
.-..|++++++.. +.+. +.. .-|.+.|.+++ .....|...+|++.|+..|..+..+........+....++-||=
T Consensus 66 ~~p~~~i~~L~~~-~~~~-~~L--~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk 141 (187)
T PF06371_consen 66 SSPEWYIKKLKSR-PSTS-KIL--KSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK 141 (187)
T ss_dssp HHHHHHHHHHTTT---HH-HHH--HHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcc-CccH-HHH--HHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence 3678888888764 2333 222 24677776665 45667777899999999888876555555556666777888998
Q ss_pred hhhCCHhhHHHhhc-cchHHHHHHHHhcc-cCCcCchhHHHHHhh
Q psy11496 331 SCLMLEENKERFLK-GEGLQLMNLMLRER-KVSRNGSLKVLDHAI 373 (607)
Q Consensus 331 slL~~~~nk~~F~e-~eGveLml~mL~~~-k~~r~~AlkvlD~al 373 (607)
+++....+...+.. .++|..+...|-.. -..+.-|+.+|.++|
T Consensus 142 al~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 142 ALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 88888888766655 56666665554432 234555677766654
No 26
>KOG4500|consensus
Probab=89.94 E-value=6.9 Score=44.18 Aligned_cols=235 Identities=16% Similarity=0.208 Sum_probs=141.6
Q ss_pred HHHHHHhhhhHHHHhcCCCC---c----hhhhh-cHHhHHHHHHHHhhcccCC-------CchHHHHhcCChHHHHHhh-
Q psy11496 99 LLFEKRTLKNREMRIKFPDN---A----EKFME-SEIELHTTIQELHAIATVP-------DLYPLLVQLKAVSSMLELV- 162 (607)
Q Consensus 99 l~fEk~~~kN~e~R~K~~d~---P----~KFmd-SE~dLd~~Ik~l~~La~~P-------~LYp~~v~l~~v~sL~~LL- 162 (607)
--+=..++.|.++|.+-.|- | .=||+ +-+.|++-+ .+++.| -+||.+...+.+--|+.||
T Consensus 158 g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~l----l~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~ 233 (604)
T KOG4500|consen 158 GVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKL----LAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLP 233 (604)
T ss_pred HHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHH----HhccccHHHHHHHhhhhhhccchHHHHHHHHHH
Confidence 34456667777777765543 1 11333 234444433 223333 2699999999999999999
Q ss_pred ccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHH---HHhhhhccCCchhhhhhhhhhHHHhhhhhc
Q psy11496 163 LHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALL---VQNLERLDETVKEESDGVHNTLGIFENLCE 239 (607)
Q Consensus 163 sHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lL---v~nL~RldE~~~~e~~gV~~~L~iiENl~e 239 (607)
+--|.||.--+.++|+-.-+-|..-= .|.++++++.+ |+|..-+ +..+|.-..+.+-+=.--++.
T Consensus 234 ~~v~~d~~eM~feila~~aend~Vkl----------~la~~gl~e~~~~lv~~~k~~--t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 234 SMVREDIDEMIFEILAKAAENDLVKL----------SLAQNGLLEDSIDLVRNMKDF--TKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred HhhccchhhHHHHHHHHHhcCcceee----------ehhhcchHHHHHHHHHhcccc--cchHHHHHHHHhhhhHhhhhh
Confidence 67899999999999998877765421 22334444444 4444333 345666555555443333333
Q ss_pred CChhHHHHHHhhh-hHHHHHHHhhccCCCCcchhhHHHHHHHH-hhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChH
Q psy11496 240 LKPDVIHDIGKQG-IIQWSLKRLKAKIPFDGNKLYTSEILSIL-CQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPE 317 (607)
Q Consensus 240 ~~p~~~~~l~~~~-LL~wLL~Rl~~~~~~D~Nk~YasEiL~Il-lq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~e 317 (607)
.-.+--..+-... +|+++++-+.. -|.|-+-+ =.|+|= +..+..+...+++.+.+..|+..|.+- ++..+.-
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S---~d~~l~t~-g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~--~~vdgnV 375 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRS---DDSNLITM-GSLAIGNFARRDDICIQLVQKDFLNKLISCLMQE--KDVDGNV 375 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcC---CchhHHHH-HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh--cCCCccc
Confidence 2222222233333 77777777764 23343332 233332 345677888999999999999999873 3433333
Q ss_pred HHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhc
Q psy11496 318 EQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRE 357 (607)
Q Consensus 318 E~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~ 357 (607)
+.++ -+..+|-.+....+||..|..+-=+|..+.+++-
T Consensus 376 ~~qh--A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~ 413 (604)
T KOG4500|consen 376 ERQH--ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL 413 (604)
T ss_pred hhHH--HHHHHHHhccccCCchhhccccchHHHHHHHHHh
Confidence 4444 4555566666688899999987666888887774
No 27
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=86.61 E-value=1.1 Score=31.94 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=32.8
Q ss_pred CchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhc
Q psy11496 144 DLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELT 181 (607)
Q Consensus 144 ~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELt 181 (607)
+....+++.|+++.|+.||.+++.+|...++..|.-|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 34556789999999999999999999999998887664
No 28
>KOG0946|consensus
Probab=85.50 E-value=71 Score=38.75 Aligned_cols=253 Identities=17% Similarity=0.204 Sum_probs=156.5
Q ss_pred HHHHHhhcccCCCchHHHHhcCChHHHHHhhc--cCCchhHHHHHHHhhhhccccc----ccc---chhhHHHHHHHHHh
Q psy11496 132 TIQELHAIATVPDLYPLLVQLKAVSSMLELVL--HENTDIAVAVVDLLQELTDVDV----LNE---SEEGTESLLTALLD 202 (607)
Q Consensus 132 ~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLs--HeNtDIai~vi~lL~ELtD~d~----~~e---~~e~~~~lv~aL~e 202 (607)
+.++|+.+|. =|.+.|-..+..-|+.-|- -.+++|.-.+++.+-=+|--|. .++ +++-..-+.+.++.
T Consensus 43 A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik 119 (970)
T KOG0946|consen 43 AVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIK 119 (970)
T ss_pred HHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHc
Confidence 4444444443 3888888888888888884 5577888888887776663332 111 22223457788885
Q ss_pred c-chHHHHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHh-h-hhHHHHHHHhhcc-CCCCcchhhHHHHH
Q psy11496 203 Q-QVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGK-Q-GIIQWSLKRLKAK-IPFDGNKLYTSEIL 278 (607)
Q Consensus 203 ~-~l~~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~-~-~LL~wLL~Rl~~~-~~~D~Nk~YasEiL 278 (607)
+ +.+.+|++-++-+|=-+ =..+..+|+++++-+|.-+..++. . .=+.-++.-+... +++-.-.+| +|
T Consensus 120 ~qd~I~lll~~~e~~DF~V------R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL---lL 190 (970)
T KOG0946|consen 120 NQDNITLLLQSLEEFDFHV------RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL---LL 190 (970)
T ss_pred CchhHHHHHHHHHhhchhh------hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH---HH
Confidence 4 66788889887666521 135688999999999886655443 2 2344444445443 344334455 78
Q ss_pred HHHhhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHHHHHhc
Q psy11496 279 SILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMNLMLRE 357 (607)
Q Consensus 279 ~Illq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml~mL~~ 357 (607)
+-|.-+++..++.++=.|..+.|+..|.- .+ ..+=-=.++.+.-.|-.+| ....|+.-|.++.-|.=|..+|..
T Consensus 191 ~eL~k~n~~IQKlVAFENaFerLfsIIee----EG-g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 191 SELVKDNSSIQKLVAFENAFERLFSIIEE----EG-GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHh----cC-CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 88888888888777766778888888765 12 1111112333333344555 478899999999999999988886
Q ss_pred ccC--------CcCc------hhHHHHHhhcCCCC---chhhhhHHhh-hchhhhHHhhhcC
Q psy11496 358 RKV--------SRNG------SLKVLDHAICGPSG---KDNANKFVDI-LGLRTIFPLFMKT 401 (607)
Q Consensus 358 ~k~--------~r~~------AlkvlD~al~~~~~---~~~c~kFVe~-~GLk~lF~lfMkk 401 (607)
.-. +..+ |+-++-.+.+..+. ...|++.+.. .|+..+--+||..
T Consensus 266 f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 266 FEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred ccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 432 2222 23333333332111 2367665554 6667777888975
No 29
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=83.11 E-value=64 Score=36.40 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=79.9
Q ss_pred hhhhhhhHHHhhhhhcCChhHHHHHHhh-----hhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccH
Q psy11496 224 SDGVHNTLGIFENLCELKPDVIHDIGKQ-----GIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGI 298 (607)
Q Consensus 224 ~~gV~~~L~iiENl~e~~p~~~~~l~~~-----~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgi 298 (607)
.+-|.++|.+|--|+.-.|+.+..|.+. ....-++.-++..+ +-...-|+-+|+.|++.++.+.......--+
T Consensus 68 ~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d--~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~ 145 (429)
T cd00256 68 DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQD--QFIVHMSFSILAKLACFGLAKMEGSDLDYYF 145 (429)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCc--hhHHHHHHHHHHHHHhcCccccchhHHHHHH
Confidence 3567889999999999899988887764 22233333444332 2344456678999987665432211100113
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhccc
Q psy11496 299 DILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERK 359 (607)
Q Consensus 299 d~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k 359 (607)
+||...+.. -+ ...+..=...||..+|..++.|..|.+.+|+..+..+|+...
T Consensus 146 ~~l~~~l~~---~~-----~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~ 198 (429)
T cd00256 146 NWLKEQLNN---IT-----NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT 198 (429)
T ss_pred HHHHHHhhc---cC-----CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc
Confidence 454444432 12 222333346789999999999999999999999999997543
No 30
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=79.76 E-value=18 Score=39.99 Aligned_cols=252 Identities=19% Similarity=0.203 Sum_probs=147.2
Q ss_pred hcHHhH-HHHHHHHhhcccCCCchHHHH-hcCChHHHHHhhccCCchhH-------------------------HHHHHH
Q psy11496 124 ESEIEL-HTTIQELHAIATVPDLYPLLV-QLKAVSSMLELVLHENTDIA-------------------------VAVVDL 176 (607)
Q Consensus 124 dSE~dL-d~~Ik~l~~La~~P~LYp~~v-~l~~v~sL~~LLsHeNtDIa-------------------------i~vi~l 176 (607)
++|.|. +..+=+|.-+|...+-|...| ..|+...+++||...-.||+ -.++.+
T Consensus 168 s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpi 247 (526)
T COG5064 168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247 (526)
T ss_pred CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHH
Confidence 456664 556788888999877666555 78999999999986666664 356777
Q ss_pred hhhhc---cccccccc-------hhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHH
Q psy11496 177 LQELT---DVDVLNES-------EEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIH 246 (607)
Q Consensus 177 L~ELt---D~d~~~e~-------~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~ 246 (607)
|..|. |+|++.+. -++...-+++.++.++..-||.-|+- +++.-..-+|-.+=|++.-...-..
T Consensus 248 L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~------~sa~iqtPalR~vGNIVTG~D~QTq 321 (526)
T COG5064 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH------ESAKIQTPALRSVGNIVTGSDDQTQ 321 (526)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC------ccccccCHHHHhhcCeeecCcccee
Confidence 77776 77776442 12344567788887777777776654 3344455567778888875555555
Q ss_pred HHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHHHHHhhh--hcCC------------
Q psy11496 247 DIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYY--KRHD------------ 312 (607)
Q Consensus 247 ~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la~y--rk~D------------ 312 (607)
.+..++.|+.+..-+..+. +.-+--|+=.++-+-..+.+-.+.+.+.|-+.-|...++.| +-+-
T Consensus 322 viI~~G~L~a~~~lLs~~k--e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 322 VIINCGALKAFRSLLSSPK--ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred hheecccHHHHHHHhcChh--hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5666777776665554321 11111122234444444555555555667777777766554 2111
Q ss_pred -CCChHHHHH-HHH-HHHHHHhhhCCHhhHHHhhccchHHHHHHHHhcccCCcCchhHHHHHhhcCCCCchhhhhHHh-h
Q psy11496 313 -PNTPEEQEM-MEN-LFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKVSRNGSLKVLDHAICGPSGKDNANKFVD-I 388 (607)
Q Consensus 313 -p~~~eE~E~-~eN-lfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k~~r~~AlkvlD~al~~~~~~~~c~kFVe-~ 388 (607)
-..++-.-| |.+ ..+.||.+|...+||.-=...+|++=.|.+=..-|. ..| ..+.--..||+ +
T Consensus 400 g~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~------------~~~-~nin~ya~~vE~A 466 (526)
T COG5064 400 GLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRL------------RYG-KNINIYAVYVEKA 466 (526)
T ss_pred ccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHH------------hcc-CCccHHHHHHHhc
Confidence 001122222 222 346677777777776554545665554443222221 111 12334457898 8
Q ss_pred hchhhhHH
Q psy11496 389 LGLRTIFP 396 (607)
Q Consensus 389 ~GLk~lF~ 396 (607)
+|++.++.
T Consensus 467 ggmd~I~~ 474 (526)
T COG5064 467 GGMDAIHG 474 (526)
T ss_pred ccHHHHHH
Confidence 99999865
No 31
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=76.35 E-value=83 Score=35.31 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=91.8
Q ss_pred CChhHHHHHHhhhhHHHHHHHh--hc---cCCCCcchhhHHHHHHHH---hhcChhHHHHhhccccHHHHHHHHhhhhcC
Q psy11496 240 LKPDVIHDIGKQGIIQWSLKRL--KA---KIPFDGNKLYTSEILSIL---CQKNNENRKLLGDLDGIDILLQQLAYYKRH 311 (607)
Q Consensus 240 ~~p~~~~~l~~~~LL~wLL~Rl--~~---~~~~D~Nk~YasEiL~Il---lq~~~~~~~~l~~~dgid~LL~~la~yrk~ 311 (607)
-+|..++.+.....+.-|++-- .. ....+...--+.|.|-.| +=.++..|..+.+.++.+.+...|+.++..
T Consensus 10 Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~ 89 (446)
T PF10165_consen 10 RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS 89 (446)
T ss_pred cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc
Confidence 3566666666655555555433 21 111122222333666555 567899999999999999999999987533
Q ss_pred CCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhc-cchHHHHHHHHhcc-cCCcCchhHHHHHhhcCCCCchhhhhHHhhh
Q psy11496 312 DPNTPEEQEMMENLFDTLCSCLMLEENKERFLK-GEGLQLMNLMLRER-KVSRNGSLKVLDHAICGPSGKDNANKFVDIL 389 (607)
Q Consensus 312 Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e-~eGveLml~mL~~~-k~~r~~AlkvlD~al~~~~~~~~c~kFVe~~ 389 (607)
. ...+.+|+--=+=.|++. ..+..+..+.+ ..|++++...|... +.......+ ...+ ++..-..+.|
T Consensus 90 ~--~~~d~~Fl~~RLLFLlTa-~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~-----~~~~-~~~~~~~l~E-- 158 (446)
T PF10165_consen 90 S--QPSDVEFLDSRLLFLLTA-LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQE-----PTAP-SPMDEEALSE-- 158 (446)
T ss_pred C--CChhHHHHHHHHHHHHhc-CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccc-----cCCC-CcchHHHHHH--
Confidence 2 455666652111112222 35556655554 57999887766543 211111000 0000 1222233333
Q ss_pred chhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhh
Q psy11496 390 GLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANML 427 (607)
Q Consensus 390 GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLl 427 (607)
=||++|.+++.-++... ........|++.|+..++
T Consensus 159 iLKllFNit~~~~~~~~---~~~~~~~~~l~~il~~~l 193 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVP---EEFSPSIPHLVSILRRLL 193 (446)
T ss_pred HHHHHHHhhhccCcccc---hhhhHHHHHHHHHHHHHh
Confidence 37788887776543211 134566677777776664
No 32
>KOG0168|consensus
Probab=75.23 E-value=28 Score=42.24 Aligned_cols=45 Identities=29% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCCcchhhHHHH--HHHHhhcChhHHHHhhccccHHHHHHHHhhhhc
Q psy11496 266 PFDGNKLYTSEI--LSILCQKNNENRKLLGDLDGIDILLQQLAYYKR 310 (607)
Q Consensus 266 ~~D~Nk~YasEi--L~Illq~~~~~~~~l~~~dgid~LL~~la~yrk 310 (607)
+.=.|+.|+.=| |+.+..++|-.+..+-++|..+.|...+.-|-+
T Consensus 394 t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 394 TILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred ccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 445789998766 444457778888888888988899889988854
No 33
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=74.13 E-value=25 Score=33.73 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhCCHhh-HHHhhccchH-HHHHHHHhcccC---CcCchhHHHHHhhcCCCCchhhhhHHhhhchhhhHH
Q psy11496 322 MENLFDTLCSCLMLEEN-KERFLKGEGL-QLMNLMLRERKV---SRNGSLKVLDHAICGPSGKDNANKFVDILGLRTIFP 396 (607)
Q Consensus 322 ~eNlfd~L~slL~~~~n-k~~F~e~eGv-eLml~mL~~~k~---~r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~ 396 (607)
.-+.|.+++.++-.++. -..+...+|+ +.|+-++.++.. ....++++|.+||. ..+|..|+-..|+.++=.
T Consensus 60 ~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~----d~~~r~~I~~~~~~~L~~ 135 (157)
T PF11701_consen 60 LIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI----DKSCRTFISKNYVSWLKE 135 (157)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT----SHHHHHCCHHHCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHH
Confidence 33889999999965544 4555557776 666667773322 23447999999987 789999999999999844
Q ss_pred hh
Q psy11496 397 LF 398 (607)
Q Consensus 397 lf 398 (607)
++
T Consensus 136 ~~ 137 (157)
T PF11701_consen 136 LY 137 (157)
T ss_dssp HT
T ss_pred HH
Confidence 33
No 34
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=73.18 E-value=1e+02 Score=33.96 Aligned_cols=186 Identities=19% Similarity=0.187 Sum_probs=120.9
Q ss_pred hcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhhhhcc
Q psy11496 138 AIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLD 217 (607)
Q Consensus 138 ~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~Rld 217 (607)
.+-.+|.+=..++-......+..+|-|+++-|.+++.-+++=++... ..+..++.-++..+++-.|+|=+
T Consensus 10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~----------~~l~~~~~l~id~~ii~SL~~~~ 79 (371)
T PF14664_consen 10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE----------ESLQILLKLHIDIFIIRSLDRDN 79 (371)
T ss_pred HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH----------HHHHHHHHcCCchhhHhhhcccC
Confidence 34567876444544445566666777888999999999998776431 23566777788899999998866
Q ss_pred CCchhhhh-hhhhhHHHhhh---hhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhh
Q psy11496 218 ETVKEESD-GVHNTLGIFEN---LCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLG 293 (607)
Q Consensus 218 E~~~~e~~-gV~~~L~iiEN---l~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~ 293 (607)
.. +.|+. +..-+=.++|- .-++...++.. +++-... +-|+=+--|=|+|+-|.-.+|+.. .
T Consensus 80 ~~-~~ER~QALkliR~~l~~~~~~~~~~~~vvra---------lvaiae~--~~D~lr~~cletL~El~l~~P~lv---~ 144 (371)
T PF14664_consen 80 KN-DVEREQALKLIRAFLEIKKGPKEIPRGVVRA---------LVAIAEH--EDDRLRRICLETLCELALLNPELV---A 144 (371)
T ss_pred CC-hHHHHHHHHHHHHHHHhcCCcccCCHHHHHH---------HHHHHhC--CchHHHHHHHHHHHHHHhhCHHHH---H
Confidence 53 55553 33333222221 11222333333 3332222 467777788899888877777765 4
Q ss_pred ccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhc
Q psy11496 294 DLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRE 357 (607)
Q Consensus 294 ~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~ 357 (607)
..+|+.+|++.+.- +. . + ..+.+..++..+|..|..|.-+..+-.++.++--...
T Consensus 145 ~~gG~~~L~~~l~d-----~~-~-~--~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 145 ECGGIRVLLRALID-----GS-F-S--ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTD 199 (371)
T ss_pred HcCCHHHHHHHHHh-----cc-H-h--HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhh
Confidence 57899999998863 11 1 1 5566788889999999999988876666666554443
No 35
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=72.06 E-value=1.6e+02 Score=35.93 Aligned_cols=176 Identities=18% Similarity=0.255 Sum_probs=94.5
Q ss_pred HHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHH--hhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHH
Q psy11496 248 IGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSIL--CQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENL 325 (607)
Q Consensus 248 l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Il--lq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNl 325 (607)
+.+.+=|.-+++||..-..+.+.+--...+|.+| .-.-+.||+.|.+.+++++||..+...=..+ ..+...+..+.+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~-~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQAN-QNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCc-cccccchHHHHH
Confidence 3334556677777776433444444444455555 2344789999999999999999885432222 244567788888
Q ss_pred HHHHHhhhCCHhh-----HHHhhccch--------HHHHHHHHhcc--cCC---cCchhHHHHHhhcCCCCchhhhhHHh
Q psy11496 326 FDTLCSCLMLEEN-----KERFLKGEG--------LQLMNLMLRER--KVS---RNGSLKVLDHAICGPSGKDNANKFVD 387 (607)
Q Consensus 326 fd~L~slL~~~~n-----k~~F~e~eG--------veLml~mL~~~--k~~---r~~AlkvlD~al~~~~~~~~c~kFVe 387 (607)
+.++.+++..... -..|....| |++++.-+... |.. .....+++=+++.|. ++.-+..|+
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~--~e~m~~Lv~ 269 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGN--EEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCC--HHHHHHHHH
Confidence 9999998853322 122333443 66666655532 111 111366666666642 333333444
Q ss_pred hhchhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhhcCCCc
Q psy11496 388 ILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCSG 432 (607)
Q Consensus 388 ~~GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l~~ 432 (607)
-. .-+.+-.+--.-.+....-.+|-.|.|..++-++-.|
T Consensus 270 ~F------~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G 308 (802)
T PF13764_consen 270 HF------KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNG 308 (802)
T ss_pred HH------HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCch
Confidence 31 1111100000000122344566667777666655555
No 36
>KOG1789|consensus
Probab=71.00 E-value=13 Score=45.91 Aligned_cols=107 Identities=17% Similarity=0.279 Sum_probs=75.4
Q ss_pred hcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhcccccccc---chhhHHHHHHHHHhc-chHHHHHHhh
Q psy11496 138 AIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNE---SEEGTESLLTALLDQ-QVCALLVQNL 213 (607)
Q Consensus 138 ~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e---~~e~~~~lv~aL~e~-~l~~lLv~nL 213 (607)
.+..||.|-..+=.+|-++-+++-..|+|+-|-..+|-+|++|..-..-.+ +.+....++..|... +.+.|....|
T Consensus 2032 L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~GLA~Eal 2111 (2235)
T KOG1789|consen 2032 LVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLMGLAAEAL 2111 (2235)
T ss_pred HHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHHHHHHHHH
Confidence 467789988888889999999999999999999999999999987544221 011223455555543 4445555666
Q ss_pred hhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhcc
Q psy11496 214 ERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAK 264 (607)
Q Consensus 214 ~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~ 264 (607)
.|+=-. -+.+++.+..+.+|+++||+-++-.
T Consensus 2112 kR~~~r--------------------~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2112 KRLMKR--------------------NTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHH--------------------hHHHHHHHHhccCcHHHHHHHhccc
Confidence 655321 1445666667778999999887764
No 37
>KOG1293|consensus
Probab=70.25 E-value=9.4 Score=44.70 Aligned_cols=81 Identities=30% Similarity=0.372 Sum_probs=64.0
Q ss_pred hHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHh-hHHHhhccchHHHHHHHHhccc-CCcCc
Q psy11496 287 ENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEE-NKERFLKGEGLQLMNLMLRERK-VSRNG 364 (607)
Q Consensus 287 ~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~-nk~~F~e~eGveLml~mL~~~k-~~r~~ 364 (607)
+.|..+...+|++-|+|.+ +||...= +--+..++|+++|.=. -|.+|+...|||-+.-|++..- .+|..
T Consensus 410 aL~tg~~~~dv~~plvqll-----~dp~~~i----~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~ 480 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLL-----MDPEIMI----MGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRAN 480 (678)
T ss_pred HHHcCCccchhHHHHHHHh-----hCcchhH----HHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHH
Confidence 3455556788999999988 6787653 3445688999998544 5999999999999999998874 55778
Q ss_pred hhHHHHHhhcCC
Q psy11496 365 SLKVLDHAICGP 376 (607)
Q Consensus 365 AlkvlD~al~~~ 376 (607)
++++|=|++-+.
T Consensus 481 ~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 481 SLWVLRHLMFNC 492 (678)
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 38
>PF05536 Neurochondrin: Neurochondrin
Probab=68.64 E-value=84 Score=36.32 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHh--hcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccc
Q psy11496 269 GNKLYTSEILSILC--QKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGE 346 (607)
Q Consensus 269 ~Nk~YasEiL~Ill--q~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~e 346 (607)
.-..|.+=-++||- -..|+.+.--.=.+-|..|+..++.- + + .+.+..++.||+++...|+++..|++.+
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~---s--~---~~~v~dalqcL~~Ias~~~G~~aLl~~g 140 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSS---S--D---LETVDDALQCLLAIASSPEGAKALLESG 140 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcC---C--c---hhHHHHHHHHHHHHHcCcHhHHHHHhcC
Confidence 34566655566662 23444432111123367788877751 1 1 7899999999999999999999999999
Q ss_pred hHHHHHHHHhcccCCcCchhHHHHHhhcCCC
Q psy11496 347 GLQLMNLMLRERKVSRNGSLKVLDHAICGPS 377 (607)
Q Consensus 347 GveLml~mL~~~k~~r~~AlkvlD~al~~~~ 377 (607)
+|-.+..++..+-.....|++++-++++...
T Consensus 141 ~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 141 AVPALCEIIPNQSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred CHHHHHHHHHhCcchHHHHHHHHHHHHHhcc
Confidence 9998888888855556678999999887543
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=66.09 E-value=1.3e+02 Score=31.37 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=90.8
Q ss_pred hccHHHHHHHHHHHHHHhhhhHHHHhcCCCCchhhhhcHHhHHHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccCCc
Q psy11496 88 VLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHENT 167 (607)
Q Consensus 88 ~ld~~~lkkl~l~fEk~~~kN~e~R~K~~d~P~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNt 167 (607)
.+++..+++++..|+.. +||. + -....-.+...|.+|.-.....++|+++.+..+|..+|.
T Consensus 8 ~l~~~~l~~Ll~lL~~t------------~dp~--i-----~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~ 68 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST------------EDPF--I-----QEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP 68 (254)
T ss_pred CcCHHHHHHHHHHHhcC------------CChH--H-----HHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh
Confidence 47778888888877642 2331 1 122345677788889888888899999999999999999
Q ss_pred hhHHHHHHHhhhhccccccccchhhHHHHHHHHHh----c--------chHHHHHHhhhhccCCc---------------
Q psy11496 168 DIAVAVVDLLQELTDVDVLNESEEGTESLLTALLD----Q--------QVCALLVQNLERLDETV--------------- 220 (607)
Q Consensus 168 DIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e----~--------~l~~lLv~nL~RldE~~--------------- 220 (607)
.+-..++..|.-|....- .....+..+..+.+ . ..+.+| -||.--++..
T Consensus 69 ~vr~~AL~aL~Nls~~~e---n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL-~nLtv~~~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 69 SVREKALNALNNLSVNDE---NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLL-TNLTVTNDYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHHHHhcCCChh---hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HccCCCcchhhhHHhhHHHHHHHHH
Confidence 999888888887654421 11111111111111 0 000111 2222111111
Q ss_pred hhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhc
Q psy11496 221 KEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKA 263 (607)
Q Consensus 221 ~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~ 263 (607)
..+...=.++|-++=||.+ +|+++..+.....+.-++.=++.
T Consensus 145 ~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 145 SGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred cCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHcc
Confidence 0122233688999999988 99999988876555444444443
No 40
>KOG2160|consensus
Probab=61.40 E-value=2.6e+02 Score=30.89 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhccc-CCcCchhHHHHHhhcCCCCchhhhhHHhhhchhhh
Q psy11496 316 PEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERK-VSRNGSLKVLDHAICGPSGKDNANKFVDILGLRTI 394 (607)
Q Consensus 316 ~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k-~~r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~l 394 (607)
.+++|-+ ||-|..++..=.|-..|....|..+++..+...- .-|..|..|+-.+.++ -|..-+.+.+..|++.+
T Consensus 97 le~ke~a---ld~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN--NP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 97 LEDKEDA---LDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN--NPKSQEQVIELGALSKL 171 (342)
T ss_pred HHHHHHH---HHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHcccHHHH
Confidence 4455544 7777777878889999999999988888665543 3477899999999884 59999999999999999
Q ss_pred HHhhhcCcccCcCCCcchhhhhHHHHHHHHhhhcCCC
Q psy11496 395 FPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCS 431 (607)
Q Consensus 395 F~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l~ 431 (607)
+.+|-+ .. ....--.++.-++||+||-+
T Consensus 172 l~~ls~-~~--------~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 172 LKILSS-DD--------PNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHcc-CC--------CchHHHHHHHHHHHHHhcCc
Confidence 887763 21 12222357788899988764
No 41
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=61.28 E-value=1.5e+02 Score=32.78 Aligned_cols=184 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhcccCCCchHHHHhcCChHHHHHhhccCCchhHHH--HHHHhhhhccccccccchh------hHHHHHHHHHhcchHHH
Q psy11496 137 HAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVA--VVDLLQELTDVDVLNESEE------GTESLLTALLDQQVCAL 208 (607)
Q Consensus 137 ~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~--vi~lL~ELtD~d~~~e~~e------~~~~lv~aL~e~~l~~l 208 (607)
.++-.+|.-...|..+|++..++.+|.|| ++.+.. ...--.....++....... .-..++.+|+. .+..
T Consensus 10 ~~~~~~~~a~~~f~~~~G~~~li~rl~~E-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk--~l~~ 86 (379)
T PF06025_consen 10 TFIDSSPDAFAAFRNLNGLDILIDRLQYE-VDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK--FLSH 86 (379)
T ss_pred HHHhccHHHHHHHHhCCCHHHHHHHHHHH-HHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH--HHHH
Q ss_pred HHH---hhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcC
Q psy11496 209 LVQ---NLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKN 285 (607)
Q Consensus 209 Lv~---nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~ 285 (607)
+++ +-.+.--+--|...=....-.||+|---|-|.+....+. +++-++.+.
T Consensus 87 ~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~--------------------------ivs~~I~ne 140 (379)
T PF06025_consen 87 AMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAIN--------------------------IVSDFIHNE 140 (379)
T ss_pred HhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHH--------------------------HHHHHHhcC
Q ss_pred hhHHHHhhccccHHHHHHHHh-hhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHH
Q psy11496 286 NENRKLLGDLDGIDILLQQLA-YYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLML 355 (607)
Q Consensus 286 ~~~~~~l~~~dgid~LL~~la-~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL 355 (607)
|.+-..+.+.+-++.+|..+. .-- |++.+---.+-|+|.+|| +...+.++|.+.+-++-+..++
T Consensus 141 PT~~~~l~e~Gl~~~~L~~i~~~~i---~~s~e~l~~lP~~l~Aic---LN~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 141 PTSFSILQEAGLIDAFLDAITAKGI---LPSSEVLTSLPNVLSAIC---LNNRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred CchhHHHHHcCChHHHHHHHhccCC---CCcHHHHHHHHHHHhHHh---cCHHHHHHHHhcChHHHHHHHh
No 42
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=55.25 E-value=1.9e+02 Score=30.27 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=60.5
Q ss_pred hHHHHhcCChH-HHHHhhccC--CchhHHHHHHHhhhhcccccc--c---cchhhHH---HHH-------HHHHhcchHH
Q psy11496 146 YPLLVQLKAVS-SMLELVLHE--NTDIAVAVVDLLQELTDVDVL--N---ESEEGTE---SLL-------TALLDQQVCA 207 (607)
Q Consensus 146 Yp~~v~l~~v~-sL~~LLsHe--NtDIai~vi~lL~ELtD~d~~--~---e~~e~~~---~lv-------~aL~e~~l~~ 207 (607)
.-.+.+.+.|+ -|+-+|.|- +.+|+.+++.||.-||=|=.. . ....++. .+. .|+.+.+++.
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~ 112 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLK 112 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 33344444444 455666443 589999999999999975333 1 1112221 122 4555677777
Q ss_pred HHHHhhhh-cc----CCchhhhhhhhhhHHHhhhhhcCC
Q psy11496 208 LLVQNLER-LD----ETVKEESDGVHNTLGIFENLCELK 241 (607)
Q Consensus 208 lLv~nL~R-ld----E~~~~e~~gV~~~L~iiENl~e~~ 241 (607)
.++.-+.. |. +-.++|..-|..+|.+|=|++.+.
T Consensus 113 ~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip 151 (266)
T PF04821_consen 113 ALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIP 151 (266)
T ss_pred HHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77766633 22 114678888999999999999983
No 43
>KOG2122|consensus
Probab=54.31 E-value=6.6e+02 Score=33.37 Aligned_cols=229 Identities=14% Similarity=0.175 Sum_probs=119.2
Q ss_pred HhHHHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchH
Q psy11496 127 IELHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVC 206 (607)
Q Consensus 127 ~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~ 206 (607)
-|=++.-+.|..++..|+---.++.+||++.|+++| |-|.|= |.++.. .+..-+..
T Consensus 209 ~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQil-H~~d~~------------~kear~----~A~aALHN------- 264 (2195)
T KOG2122|consen 209 DDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQIL-HGPDDE------------DKEARK----RASAALHN------- 264 (2195)
T ss_pred CCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHh-hCCchh------------hHHHHH----HHHHHHHH-------
Confidence 344566778888888898888899999999998877 444432 111110 01111111
Q ss_pred HHHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccC-CCCcchhhHHHHHHHH--hh
Q psy11496 207 ALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKI-PFDGNKLYTSEILSIL--CQ 283 (607)
Q Consensus 207 ~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~-~~D~Nk~YasEiL~Il--lq 283 (607)
+|.+ +-++-...--..+|-++|-+.. .| ...-.|+..|=-.-. ..|...+-+ .++.| +.
T Consensus 265 --IVhS-----qPD~kr~RRE~kvL~lLeQIra--------YC-~~~~~~lqar~~~~apa~~~H~lca--A~~~lMK~S 326 (2195)
T KOG2122|consen 265 --IVHS-----QPDEKRGRREKKVLHLLEQIRA--------YC-ETCWTWLQARGPAIAPASDEHQLCA--ALCTLMKLS 326 (2195)
T ss_pred --Hhhc-----CcchhhhHHHHHHHHHHHHHHH--------HH-HHHHHHHHhcCCCCCCcccchhhHH--HHHHHHHhh
Confidence 2211 1111112222334444443332 11 136678887754332 234444433 23333 67
Q ss_pred cChhHHHHhhccccHHH---HHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhC-CHhhHHHhhccchHHHHHHHHhccc
Q psy11496 284 KNNENRKLLGDLDGIDI---LLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLM-LEENKERFLKGEGLQLMNLMLRERK 359 (607)
Q Consensus 284 ~~~~~~~~l~~~dgid~---LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~-~~~nk~~F~e~eGveLml~mL~~~k 359 (607)
..++-|....+++|+.. ||+.--.+-.--+++.+-.-+=--...+|+++-. ...||..++...|. |=-++++-.
T Consensus 327 FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf--MeavVAQL~ 404 (2195)
T KOG2122|consen 327 FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF--MEAVVAQLI 404 (2195)
T ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH--HHHHHHHHh
Confidence 78899988888877654 4554333222223344443333334556788886 55579999999884 443444444
Q ss_pred CCcCchhHHHHHhhcCCC---CchhhhhHHhhhchhhhHHhhh
Q psy11496 360 VSRNGSLKVLDHAICGPS---GKDNANKFVDILGLRTIFPLFM 399 (607)
Q Consensus 360 ~~r~~AlkvlD~al~~~~---~~~~c~kFVe~~GLk~lF~lfM 399 (607)
.+...-.-|+..++.+.. ....++.|=+.+-+..|-..-|
T Consensus 405 s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al 447 (2195)
T KOG2122|consen 405 SAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACAL 447 (2195)
T ss_pred cChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHH
Confidence 444333444444443221 2334445555555655543344
No 44
>KOG4189|consensus
Probab=54.07 E-value=37 Score=34.66 Aligned_cols=60 Identities=30% Similarity=0.484 Sum_probs=36.4
Q ss_pred hhhhhhhh-HHHHHHHHHHHH----Hhhhhhhhhhhcc----chhhhHHHHhhhhccc-hHHHHhHHHHH
Q psy11496 486 SKFTENDH-EKVDRLLELHFK----YLSKVDEADKEQR----DEDEDENYLRRLEAGL-FTLQLVDYIIV 545 (607)
Q Consensus 486 aKFvE~dy-EKvdRL~eLr~~----y~~rv~~~d~~~~----e~~ede~yl~rLdaGL-f~LQ~iD~iL~ 545 (607)
=+|||+|| +|||.|.++|.. |..-+.-.-++.. .......-+.|+--|| |....++.|.+
T Consensus 54 F~Fve~Dv~aKid~L~~l~ssd~et~rtild~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~a 123 (209)
T KOG4189|consen 54 FSFVEKDVRAKIDDLVELRSSDPETYRTILDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFA 123 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHc
Confidence 38999998 799999999986 5444432211100 0012223456676666 66777777665
No 45
>KOG4224|consensus
Probab=53.68 E-value=14 Score=41.00 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=75.1
Q ss_pred HhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhccc-CCcCchhHHH
Q psy11496 291 LLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERK-VSRNGSLKVL 369 (607)
Q Consensus 291 ~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k-~~r~~Alkvl 369 (607)
.++++.|+|.|+.+... | ..|+--|-.-|+.++....+||.+....-|++-+.++-+.+- ..+..|.-.|
T Consensus 121 liv~l~Gl~~Li~qmmt-----d----~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaL 191 (550)
T KOG4224|consen 121 LIVSLLGLDLLILQMMT-----D----GVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGAL 191 (550)
T ss_pred EEEeccChHHHHHHhcC-----C----CcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHH
Confidence 34467888877665432 1 223334667899999978999999999999888888555542 4444555555
Q ss_pred HHhhcCCCCchhhhhHHhhhchhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHH
Q psy11496 370 DHAICGPSGKDNANKFVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKA 424 (607)
Q Consensus 370 D~al~~~~~~~~c~kFVe~~GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siia 424 (607)
-..+ ...+|...+|.++|++.+-+++-.. .......--|++|-|+
T Consensus 192 lnmT---hs~EnRr~LV~aG~lpvLVsll~s~-------d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 192 LNMT---HSRENRRVLVHAGGLPVLVSLLKSG-------DLDVQYYCTTAISNIA 236 (550)
T ss_pred HHhh---hhhhhhhhhhccCCchhhhhhhccC-------ChhHHHHHHHHhhhhh
Confidence 4443 3578999999999999986543321 1222344456666555
No 46
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=53.44 E-value=1.4e+02 Score=29.55 Aligned_cols=103 Identities=9% Similarity=0.252 Sum_probs=66.8
Q ss_pred HHHHhcCChHHHHHhhccCC------chhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCc
Q psy11496 147 PLLVQLKAVSSMLELVLHEN------TDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETV 220 (607)
Q Consensus 147 p~~v~l~~v~sL~~LLsHeN------tDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~ 220 (607)
-+|++.|++..|+.++--.. -.+-.=++.-+.||-|-... .|+.|-++++.. +++.+. ..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~v-----sWd~l~~~FI~K-----ia~~Vn----~~ 70 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIV-----SWDTLSDSFIKK-----IASYVN----SS 70 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcC-----chhhccHHHHHH-----HHHHHc----cc
Confidence 47999999999999884332 35666677788888775432 477666665542 333332 22
Q ss_pred hhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhc
Q psy11496 221 KEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKA 263 (607)
Q Consensus 221 ~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~ 263 (607)
.-|++=..-+|+|+||++.-.|.....+.+.-=++-|+.-++.
T Consensus 71 ~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~ 113 (160)
T PF11841_consen 71 AMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQV 113 (160)
T ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc
Confidence 2366777789999999998556555555554345555555554
No 47
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=50.48 E-value=1.8e+02 Score=30.10 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=77.0
Q ss_pred hhHHHHHHHhhcchhhHHHHHHhhhhh-hhhHHHHHHHHHhhcCC-chhhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhh
Q psy11496 434 QRQRLLSKFTENDHEKVDRLLELHFKY-LSKHVVSIIANMLRNCS-GPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVD 511 (607)
Q Consensus 434 ~r~Rll~KFvE~~~eK~drL~el~~k~-~~Ehvl~IiaSLl~~l~-s~~R~RlLaKFvE~dyEKvdRL~eLr~~y~~rv~ 511 (607)
|-..++.+||+. | -++|.-+||.+|...+- .|+..|--|+ ++...+.=.. -.+-+.
T Consensus 50 G~vt~fd~fm~G--------------Y~p~~~~~~If~Alc~a~~~dp~~~r~dA~-------~l~~~a~~~s-~~~l~~ 107 (216)
T PF11264_consen 50 GLVTVFDRFMQG--------------YPPEEDKDSIFNALCQALGFDPEQYRQDAE-------KLEEWAKGKS-IEDLLS 107 (216)
T ss_pred hHHHHHHHHhcC--------------CCChhHHHHHHHHHHHHcCCCHHHHHHHHH-------HHHHHHHcCC-HHHHHH
Confidence 445677777764 3 56888899999999996 8888884333 2222211000 000000
Q ss_pred hhhhhc-cchhhhHHHHhhh--hccchHHHHhHHHHHHHHhcCch-------hHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy11496 512 EADKEQ-RDEDEDENYLRRL--EAGLFTLQLVDYIIVETCAAGAA-------TIKQRVLQIINLRGGSLKTIRHVMREYA 581 (607)
Q Consensus 512 ~~d~~~-~e~~ede~yl~rL--daGLf~LQ~iD~iL~~L~~~~~~-------~i~~ri~~lL~~~~~~~~~I~~~l~ey~ 581 (607)
...... +.+..-..-+.+. ..+..|-+....||+.|...-++ .-...+..+...-|.+...+..-|.=|.
T Consensus 108 ~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~kDL~lYr 187 (216)
T PF11264_consen 108 WLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEKDLDLYR 187 (216)
T ss_pred HHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHhhHHHHH
Confidence 000000 0111111122333 33556678888888888875444 5667777788888999999999999999
Q ss_pred hhcC
Q psy11496 582 GNLG 585 (607)
Q Consensus 582 ~~l~ 585 (607)
.||+
T Consensus 188 snLe 191 (216)
T PF11264_consen 188 SNLE 191 (216)
T ss_pred hHHH
Confidence 8885
No 48
>KOG4500|consensus
Probab=49.50 E-value=1.9e+02 Score=33.26 Aligned_cols=278 Identities=17% Similarity=0.145 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHhcCCCCchhhhhcHHhHHHHHHHHhhcccCCCc---hHHHHhcCChHHHHHhhccCCchh
Q psy11496 93 MLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELHAIATVPDL---YPLLVQLKAVSSMLELVLHENTDI 169 (607)
Q Consensus 93 ~lkkl~l~fEk~~~kN~e~R~K~~d~P~KFmdSE~dLd~~Ik~l~~La~~P~L---Yp~~v~l~~v~sL~~LLsHeNtDI 169 (607)
.+++-..+---.+.||...|.+|-+= -+++| .|.-|.-+-+.|+. -.-|-.+|-+- -++|||-|-
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~---~I~a~-----~le~Lrq~psS~d~ev~~Q~~RaLgNiC----ydn~E~R~a 124 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNY---CIDAE-----ALELLRQTPSSPDTEVHEQCFRALGNIC----YDNNENRAA 124 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHH---hhHHH-----HHHHHHhCCCCCcccHHHHHHHHHhhhh----ccCchhHHH
Confidence 34433333333455788777655321 13333 34445555666642 22222233222 368999886
Q ss_pred H------HHHHHHhhhhccccccccchh-------------hHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhhhhh
Q psy11496 170 A------VAVVDLLQELTDVDVLNESEE-------------GTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNT 230 (607)
Q Consensus 170 a------i~vi~lL~ELtD~d~~~e~~e-------------~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV~~~ 230 (607)
. .-||++|.=++-.|+.+..+- +.+.+-.-+++.+++..|+-.++ ++- .-+.--+.+
T Consensus 125 ~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~-I~~---qNaa~~e~l 200 (604)
T KOG4500|consen 125 FFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYW-IDW---QNAALTEKL 200 (604)
T ss_pred HHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhh-ccc---ccHHHHHHH
Confidence 4 556888888888877543110 11233334445555555544331 222 123334566
Q ss_pred HHHhhhhhcCChhHHHHHHhhh-hHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHHHHHhhhh
Q psy11496 231 LGIFENLCELKPDVIHDIGKQG-IIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYK 309 (607)
Q Consensus 231 L~iiENl~e~~p~~~~~l~~~~-LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la~yr 309 (607)
|.-+=||+++-.++...++..+ +..-+++-+......|- .-.+=|+|+-.. .+....-.|++.+-++.++..+..|+
T Consensus 201 l~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~-~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k 278 (604)
T KOG4500|consen 201 LAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDI-DEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMK 278 (604)
T ss_pred HhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccch-hhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcc
Confidence 7778888888777777777654 44333333333211221 111224554432 34555666776555788888888885
Q ss_pred cCCCCChHHHHHHHHHHHHHHh----hhCCHhh-HHHhhccchHHHHHHHHhcccCC-----cCchhHHHHHhhcCCCCc
Q psy11496 310 RHDPNTPEEQEMMENLFDTLCS----CLMLEEN-KERFLKGEGLQLMNLMLRERKVS-----RNGSLKVLDHAICGPSGK 379 (607)
Q Consensus 310 k~Dp~~~eE~E~~eNlfd~L~s----lL~~~~n-k~~F~e~eGveLml~mL~~~k~~-----r~~AlkvlD~al~~~~~~ 379 (607)
.+..+++- -|+|-..|- ++.-.+. ...|.... ++-.|.+=.+.. -.+++-+=++|- ..
T Consensus 279 -~~t~k~d~----~~l~k~~~el~vllltGDeSMq~L~~~p~---~l~~~~sw~~S~d~~l~t~g~LaigNfaR----~D 346 (604)
T KOG4500|consen 279 -DFTKKTDM----LNLFKRIAELDVLLLTGDESMQKLHADPQ---FLDFLESWFRSDDSNLITMGSLAIGNFAR----RD 346 (604)
T ss_pred -cccchHHH----HHHHHhhhhHhhhhhcCchHHHHHhcCcH---HHHHHHHHhcCCchhHHHHHHHHHHhhhc----cc
Confidence 22233332 244443332 2222222 33333222 222233222211 222444445553 36
Q ss_pred hhhhhHHhhhchhhhHHhhhc
Q psy11496 380 DNANKFVDILGLRTIFPLFMK 400 (607)
Q Consensus 380 ~~c~kFVe~~GLk~lF~lfMk 400 (607)
++|-.||+..-+.-+...+|+
T Consensus 347 ~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 347 DICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999888899997
No 49
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=46.76 E-value=94 Score=28.44 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=48.8
Q ss_pred hHHHHHHHHhhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhh-CCHhhHHHhhcc
Q psy11496 273 YTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCL-MLEENKERFLKG 345 (607)
Q Consensus 273 YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL-~~~~nk~~F~e~ 345 (607)
.+-++++.|.-.++.++..+.+.+||..+|+... .|+..+.=.|+. +| |+=.++ -.++|++...+.
T Consensus 5 ~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~----iD~~nP~irEwa--i~-aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLVRELGGIPLILSCCN----IDDHNPFIREWA--IF-AIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcC----CCcccHHHHHHH--HH-HHHHHHhCCHHHHHHHHhc
Confidence 3446788888889999999999999999998753 367777777776 22 344445 588888876543
No 50
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=46.53 E-value=1.3e+02 Score=31.51 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=63.4
Q ss_pred HHHHHhhccCCchhHHHHHHHhhhhc---cccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhhhhhHH
Q psy11496 156 SSMLELVLHENTDIAVAVVDLLQELT---DVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLG 232 (607)
Q Consensus 156 ~sL~~LLsHeNtDIai~vi~lL~ELt---D~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV~~~L~ 232 (607)
..|-.-|++++.-+-..++.+|.+.. +.+.+.. .+...|++.+ .+||++. .-..++-..|.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~--~ev~~L~~F~------------~~rl~D~--~~~~~~l~gl~ 65 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSR--QEVQVLLDFF------------CSRLDDH--ACVQPALKGLL 65 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccH--HHHHHHHHHH------------HHHhccH--hhHHHHHHHHH
Confidence 45667788888888888888888764 3333332 2233333332 2466431 11122222233
Q ss_pred HhhhhhcCChhHHHHHHhhhhHHHHHHHhhcc--CCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHHHHHh
Q psy11496 233 IFENLCELKPDVIHDIGKQGIIQWSLKRLKAK--IPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLA 306 (607)
Q Consensus 233 iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~--~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la 306 (607)
-+-+|-.+.++.+..+++ -+.+.++-+ ...++-..| ++|..|+++....-..+|. +.+..+++.+.
T Consensus 66 ~L~~~~~~~~~~~~~i~~-----~l~~~~~~q~~~q~~R~~~~--~ll~~l~~~~~~~l~~~~~-~fv~~~i~~~~ 133 (262)
T PF14500_consen 66 ALVKMKNFSPESAVKILR-----SLFQNVDVQSLPQSTRYAVY--QLLDSLLENHREALQSMGD-DFVYGFIQLID 133 (262)
T ss_pred HHHhCcCCChhhHHHHHH-----HHHHhCChhhhhHHHHHHHH--HHHHHHHHHhHHHHHhchh-HHHHHHHHHhc
Confidence 333666666666555443 333333222 234566667 6888887664433333331 33444444444
No 51
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=46.31 E-value=3.4e+02 Score=30.57 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=81.8
Q ss_pred hhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCC---CCcchhhHHHHHHHHhhcChhHHHHhhc-cc
Q psy11496 221 KEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIP---FDGNKLYTSEILSILCQKNNENRKLLGD-LD 296 (607)
Q Consensus 221 ~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~---~D~Nk~YasEiL~Illq~~~~~~~~l~~-~d 296 (607)
..+-..+..+|=.+=|++=..|..-..++..+...-+..|++...+ .+....|.+=||-++-..++..+..+.+ ..
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 3456677778888889997788888777777888999999988522 4556677777887777777888877774 57
Q ss_pred cHHHHHHHHhhhhcCCCC--------ChHHHHHHHHHHHHHHhhhC
Q psy11496 297 GIDILLQQLAYYKRHDPN--------TPEEQEMMENLFDTLCSCLM 334 (607)
Q Consensus 297 gid~LL~~la~yrk~Dp~--------~~eE~E~~eNlfd~L~slL~ 334 (607)
|++.|...|.+.-+.-+. ...+.+.+-.++-.+-++..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~ 168 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITL 168 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhh
Confidence 888888877665332221 23577777777766667664
No 52
>KOG2122|consensus
Probab=45.24 E-value=4.2e+02 Score=34.98 Aligned_cols=112 Identities=16% Similarity=0.276 Sum_probs=70.0
Q ss_pred ChhHHHHHHhhhhHHHHHHHhhccCC-CCcchhhHHHHHHHHhhcCh-hHH-HHhhc-cccHHHHHHH----HhhhhcCC
Q psy11496 241 KPDVIHDIGKQGIIQWSLKRLKAKIP-FDGNKLYTSEILSILCQKNN-ENR-KLLGD-LDGIDILLQQ----LAYYKRHD 312 (607)
Q Consensus 241 ~p~~~~~l~~~~LL~wLL~Rl~~~~~-~D~Nk~YasEiL~Illq~~~-~~~-~~l~~-~dgid~LL~~----la~yrk~D 312 (607)
.|+-|..+...+-|++|++++.-.+. .+.-+-||++-|--|+-+.+ +++ .+..+ +-.+|.++.+ .-.|..++
T Consensus 224 s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~ 303 (2195)
T KOG2122|consen 224 SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARG 303 (2195)
T ss_pred CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777777778899999999987644 45566788888877765544 333 22222 2222222221 12235677
Q ss_pred CCC---hHHHHHHHHHHHHHHhhh---CCHhhHHHhhccchHHHHHHHHh
Q psy11496 313 PNT---PEEQEMMENLFDTLCSCL---MLEENKERFLKGEGLQLMNLMLR 356 (607)
Q Consensus 313 p~~---~eE~E~~eNlfd~L~slL---~~~~nk~~F~e~eGveLml~mL~ 356 (607)
|.. ++|-++ -.++|.++ +..++|..-.++-|++.+--||.
T Consensus 304 ~~~apa~~~H~l----caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~ 349 (2195)
T KOG2122|consen 304 PAIAPASDEHQL----CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQ 349 (2195)
T ss_pred CCCCCcccchhh----HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHH
Confidence 754 444444 34667777 47888999999888877654443
No 53
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.06 E-value=2.1e+02 Score=25.50 Aligned_cols=81 Identities=10% Similarity=0.068 Sum_probs=52.5
Q ss_pred HhhhhccccccccchhhHHHHHHHHHhc-chHHHHHHhh-hhccCCchhhhhhhhhhHHHhhhhhcC-ChhHHHHHHhhh
Q psy11496 176 LLQELTDVDVLNESEEGTESLLTALLDQ-QVCALLVQNL-ERLDETVKEESDGVHNTLGIFENLCEL-KPDVIHDIGKQG 252 (607)
Q Consensus 176 lL~ELtD~d~~~e~~e~~~~lv~aL~e~-~l~~lLv~nL-~RldE~~~~e~~gV~~~L~iiENl~e~-~p~~~~~l~~~~ 252 (607)
++.+.|+++....+......+.+..-+. ....-+++.| .||+.. ...-++.+|.++|.++.- .+.+...++...
T Consensus 4 ~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~---~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~ 80 (115)
T cd00197 4 TVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK---NPHVVLKALTLLEYCVKNCGERFHQEVASND 80 (115)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHHccHHHHHHHHHhH
Confidence 4567787765543333334455555443 3445566655 688765 678899999999999973 455667777766
Q ss_pred hHHHHHH
Q psy11496 253 IIQWSLK 259 (607)
Q Consensus 253 LL~wLL~ 259 (607)
++.-+++
T Consensus 81 ~~~~l~~ 87 (115)
T cd00197 81 FAVELLK 87 (115)
T ss_pred HHHHHHH
Confidence 6666654
No 54
>KOG1222|consensus
Probab=44.84 E-value=2.4e+02 Score=32.95 Aligned_cols=191 Identities=18% Similarity=0.268 Sum_probs=120.0
Q ss_pred HHHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHH
Q psy11496 129 LHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCAL 208 (607)
Q Consensus 129 Ld~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~l 208 (607)
|-.++--|.-||+.-.+=-.+++-+.|.-||--|...|.+..+.|+..|..|.=-+ |.. +.|.++++++-
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~---eNK-------~~M~~~~iveK 349 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD---ENK-------IVMEQNGIVEK 349 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc---cch-------HHHHhccHHHH
Confidence 33444445557777666677788899999999999999999999999999987443 111 22334444444
Q ss_pred HHHhhhhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccC--CCCcchhhHHHHHHHHhhcCh
Q psy11496 209 LVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKI--PFDGNKLYTSEILSILCQKNN 286 (607)
Q Consensus 209 Lv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~--~~D~Nk~YasEiL~Illq~~~ 286 (607)
|+ |+=.....| -+.-||-++=|+ +|+..+-..+++.++++-+..-++... ..--|-+|+ ++-..
T Consensus 350 L~----klfp~~h~d--L~~~tl~LlfNl-SFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh-------~S~dD 415 (791)
T KOG1222|consen 350 LL----KLFPIQHPD--LRKATLMLLFNL-SFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYH-------LSCDD 415 (791)
T ss_pred HH----HhcCCCCHH--HHHHHHHHhhhc-cccccccHHHhhccchHHHHHHhCCcccchhhhhhhhh-------hccCc
Confidence 43 333332222 334456666665 588888888999999999999887632 112233331 34455
Q ss_pred hHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHH
Q psy11496 287 ENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMN 352 (607)
Q Consensus 287 ~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml 352 (607)
....-|.-++-|..|...+=. .++.+.-.. +-+||.=| ...-|-+..++++|++++.
T Consensus 416 ~~K~MfayTdci~~lmk~v~~------~~~~~vdl~---lia~ciNl~lnkRNaQlvceGqgL~~LM 473 (791)
T KOG1222|consen 416 DAKAMFAYTDCIKLLMKDVLS------GTGSEVDLA---LIALCINLCLNKRNAQLVCEGQGLDLLM 473 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cCCceecHH---HHHHHHHHHhccccceEEecCcchHHHH
Confidence 666677777877777663321 111111111 22455555 5667778889999987654
No 55
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=43.93 E-value=45 Score=31.20 Aligned_cols=57 Identities=9% Similarity=0.021 Sum_probs=34.7
Q ss_pred HHHHHhhhhHHHHhcCCCCchhhhhcHHhHHHHHHHHhhcccCCCchHHHHhcCChH
Q psy11496 100 LFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELHAIATVPDLYPLLVQLKAVS 156 (607)
Q Consensus 100 ~fEk~~~kN~e~R~K~~d~P~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~ 156 (607)
.|..++.+..-..=.-..||.||+=-.+..-+=+-.|=----.|.-.+.||.+||-+
T Consensus 13 ~LK~kYa~~lv~~W~E~TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGN 69 (112)
T PF07757_consen 13 RLKEKYARWLVDNWPESTDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGN 69 (112)
T ss_pred HHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCc
Confidence 333444333333333367999999877665555544443333445678899999877
No 56
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=42.67 E-value=32 Score=35.94 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=46.1
Q ss_pred HHHHHHHhhcccCCCchHHHHhcCChHHHHHhhc-cCCchhHHHHHHHhhhhcc
Q psy11496 130 HTTIQELHAIATVPDLYPLLVQLKAVSSMLELVL-HENTDIAVAVVDLLQELTD 182 (607)
Q Consensus 130 d~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLs-HeNtDIai~vi~lL~ELtD 182 (607)
...+|-|..||..|++-++++..+++++|++|+. +++.++..-|+.++.-+++
T Consensus 152 ~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 152 VQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 4578888889999999999999999999999995 5689999888888887753
No 57
>KOG2759|consensus
Probab=42.23 E-value=5.2e+02 Score=29.53 Aligned_cols=221 Identities=18% Similarity=0.152 Sum_probs=125.7
Q ss_pred HHHHHHhhcccCCCchHHHHhcCChHHHHHhhc--cCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHH
Q psy11496 131 TTIQELHAIATVPDLYPLLVQLKAVSSMLELVL--HENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCAL 208 (607)
Q Consensus 131 ~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLs--HeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~l 208 (607)
-.++=|+-+...|+.=-.||..+++.+|+..|+ |-|+-+-=..|-.+==||=. ..+ +..+---+++..
T Consensus 176 ~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-------~~~---ae~~~~~~li~~ 245 (442)
T KOG2759|consen 176 FAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-------PHA---AEKLKRFDLIQD 245 (442)
T ss_pred HHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-------HHH---HHHHhhccHHHH
Confidence 356778888889998778899999999999994 43333322222222222211 011 111122344444
Q ss_pred HHHhhhhccCCchhhhhhhhh-hHHHhhhhhcCCh------hHHHHHHhhhh--------------------HHHHHHHh
Q psy11496 209 LVQNLERLDETVKEESDGVHN-TLGIFENLCELKP------DVIHDIGKQGI--------------------IQWSLKRL 261 (607)
Q Consensus 209 Lv~nL~RldE~~~~e~~gV~~-~L~iiENl~e~~p------~~~~~l~~~~L--------------------L~wLL~Rl 261 (607)
|++-+. +.-.+-|+- ++++|=|+++-.| ..+..++.+++ +.+|..++
T Consensus 246 L~~Ivk------~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 246 LSDIVK------ESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 444331 111223333 4777778877554 44444444332 44445555
Q ss_pred hcc-CCCCcchhhHHHHHHHHhhcCh---------hHHHHhhcccc--HHHHHHHHhhhhcCCCCChHHHHHHHHHHHHH
Q psy11496 262 KAK-IPFDGNKLYTSEILSILCQKNN---------ENRKLLGDLDG--IDILLQQLAYYKRHDPNTPEEQEMMENLFDTL 329 (607)
Q Consensus 262 ~~~-~~~D~Nk~YasEiL~Illq~~~---------~~~~~l~~~dg--id~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L 329 (607)
++. .....=--|.+|+.+=.|.-|| +|+.+|.+.+- +-.|...|.. ..||..- .=-++|+-
T Consensus 320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~--s~Dp~iL-----~VAc~DIg 392 (442)
T KOG2759|consen 320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET--SNDPIIL-----CVACHDIG 392 (442)
T ss_pred HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc--CCCCcee-----ehhhhhHH
Confidence 543 1233344699999888887777 57888887662 3334444443 5677542 01234444
Q ss_pred HhhhCCHhhHHHhhccchHHHHHHHHhcccC-CcCchhHHHHHhhc
Q psy11496 330 CSCLMLEENKERFLKGEGLQLMNLMLRERKV-SRNGSLKVLDHAIC 374 (607)
Q Consensus 330 ~slL~~~~nk~~F~e~eGveLml~mL~~~k~-~r~~AlkvlD~al~ 374 (607)
..+=..|++|....+..|=+.+..+|...-+ -|..|+...-.++.
T Consensus 393 e~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 393 EYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 4444689999999999999999888887643 35556655544443
No 58
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=40.34 E-value=99 Score=34.49 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=74.8
Q ss_pred HHHHhhcccCCCc-hHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHH
Q psy11496 133 IQELHAIATVPDL-YPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQ 211 (607)
Q Consensus 133 Ik~l~~La~~P~L-Yp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~ 211 (607)
|+...-+-|..+. -..++..|+.+-+..||+|+---|--.++=.|.-+|--. ..=+.+.++.+++..||.
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn---------teqiqavid~nliPpLi~ 376 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN---------TEQIQAVIDANLIPPLIH 376 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC---------HHHHHHHHhcccchHHHH
Confidence 3444444444433 455678999999999999999999888877777666532 223677778899999999
Q ss_pred hhhhccCCchhhh-hhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhh
Q psy11496 212 NLERLDETVKEES-DGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLK 262 (607)
Q Consensus 212 nL~RldE~~~~e~-~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~ 262 (607)
-|+--+=.-.-|| =+|.|..+= -+ -+|+...-++.++++.=|-+-++
T Consensus 377 lls~ae~k~kKEACWAisNatsg---g~-~~PD~iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSG---GL-NRPDIIRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc---cc-CCchHHHHHHHccchhHHHHHHh
Confidence 8875544333332 222222111 11 27888777888877666655554
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=39.71 E-value=1.5e+02 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=22.8
Q ss_pred hHHHHHhh-ccCCchhHHHHHHHhhhhccc
Q psy11496 155 VSSMLELV-LHENTDIAVAVVDLLQELTDV 183 (607)
Q Consensus 155 v~sL~~LL-sHeNtDIai~vi~lL~ELtD~ 183 (607)
++.|+..| .|+|..+-..++..|.++-++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~ 30 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP 30 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 35677877 899999999999999866544
No 60
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=38.81 E-value=37 Score=23.71 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=22.8
Q ss_pred hHHHHHhhccCCchhHHHHHHHhhhhc
Q psy11496 155 VSSMLELVLHENTDIAVAVVDLLQELT 181 (607)
Q Consensus 155 v~sL~~LLsHeNtDIai~vi~lL~ELt 181 (607)
++.++++|+|+|.++-.+++.-|..+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 578899999999999999998888765
No 61
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=37.50 E-value=70 Score=37.96 Aligned_cols=94 Identities=26% Similarity=0.312 Sum_probs=62.1
Q ss_pred CCC-chHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCc
Q psy11496 142 VPD-LYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETV 220 (607)
Q Consensus 142 ~P~-LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~ 220 (607)
.|+ |=..|-+-++...++++|-|++.||.-+++++|.+.+|++.=- |....|+..-.+ ..+.-++.+|.++-.-.
T Consensus 512 ~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~---e~i~~ll~~~~~-~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 512 DPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRL---EAIQALLQSNFS-PTLSAINWSLRQLTKLK 587 (727)
T ss_pred CHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHH---HHHHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 354 4445555789999999999999999999999999999965432 334444443333 23445667777776642
Q ss_pred h--hhhhhhhhhHHHhhhhhc
Q psy11496 221 K--EESDGVHNTLGIFENLCE 239 (607)
Q Consensus 221 ~--~e~~gV~~~L~iiENl~e 239 (607)
- .=...|....-||+-|++
T Consensus 588 ~~~p~pr~vr~~~DIi~~Lcd 608 (727)
T PF12726_consen 588 FFEPCPRMVRCLMDIIEVLCD 608 (727)
T ss_pred hhcchHHHHHHHHHHHHHHcC
Confidence 2 112356666666666665
No 62
>PF05536 Neurochondrin: Neurochondrin
Probab=37.40 E-value=7.2e+02 Score=28.90 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=64.4
Q ss_pred HHhHHHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccC--CchhHHHHHHHhhhhccccccccchhhHHHHHHHHHh-
Q psy11496 126 EIELHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHE--NTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLD- 202 (607)
Q Consensus 126 E~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHe--NtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e- 202 (607)
..=.++.++-|..++.+|+=-..|++.|+++.|++.+.|. +.|++..++--+---.+.+...+.......++..|-.
T Consensus 113 ~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~ 192 (543)
T PF05536_consen 113 LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARD 192 (543)
T ss_pred hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999772 4688888777765555544444322222333322221
Q ss_pred ---------cchHHHHHHhhhhcc
Q psy11496 203 ---------QQVCALLVQNLERLD 217 (607)
Q Consensus 203 ---------~~l~~lLv~nL~Rld 217 (607)
=.++++|...|.+.+
T Consensus 193 fs~~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 193 FSSFHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred HHhhccchHHHHHHHHHHhcCcCC
Confidence 256677877887774
No 63
>KOG4464|consensus
Probab=37.31 E-value=1e+02 Score=35.01 Aligned_cols=80 Identities=16% Similarity=0.319 Sum_probs=46.4
Q ss_pred CCChHHHHHHHHHHHHHHhhhC-CHhhHHHhhccchHH-HHHHHHhcccCCcCchhHHHHH----hhcCCCCchhhh-hH
Q psy11496 313 PNTPEEQEMMENLFDTLCSCLM-LEENKERFLKGEGLQ-LMNLMLRERKVSRNGSLKVLDH----AICGPSGKDNAN-KF 385 (607)
Q Consensus 313 p~~~eE~E~~eNlfd~L~slL~-~~~nk~~F~e~eGve-Lml~mL~~~k~~r~~AlkvlD~----al~~~~~~~~c~-kF 385 (607)
|++++ -.-+-+..-|||+++. ++-.|.+|.+..-+. ++.++++.+.....-++.+||. +++.. .+.... .|
T Consensus 106 ~~v~d-~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltal-e~~~Rsql~ 183 (532)
T KOG4464|consen 106 PTVAD-MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTAL-ETDHRSQLI 183 (532)
T ss_pred Ccccc-hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHh-hHHHHHHHH
Confidence 44443 3445566789999995 777899999877664 4445555554444444444442 22222 233333 35
Q ss_pred Hhhhchhhh
Q psy11496 386 VDILGLRTI 394 (607)
Q Consensus 386 Ve~~GLk~l 394 (607)
++..|+.++
T Consensus 184 ~~l~Gl~~l 192 (532)
T KOG4464|consen 184 AELLGLELL 192 (532)
T ss_pred HHhcccHHH
Confidence 666776665
No 64
>KOG1788|consensus
Probab=36.74 E-value=5.6e+02 Score=32.98 Aligned_cols=122 Identities=23% Similarity=0.370 Sum_probs=77.8
Q ss_pred HHHHHHhhcChhHHHHhhccccHH-------------HHHHHHhhhhcCCCCChHHHHHH-------------------H
Q psy11496 276 EILSILCQKNNENRKLLGDLDGID-------------ILLQQLAYYKRHDPNTPEEQEMM-------------------E 323 (607)
Q Consensus 276 EiL~Illq~~~~~~~~l~~~dgid-------------~LL~~la~yrk~Dp~~~eE~E~~-------------------e 323 (607)
..|-+|+.++.+|...|.+.+|+. .||+.++..-..||+.-.-.|.| +
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflindehRSslLrivscLitvdpkqvhhqelmalVdtLksgmvt~Isgeqyk 743 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIVSCLITVDPKQVHHQELMALVDTLKSGMVTRISGEQYK 743 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHhcceeccchhHHH
Confidence 356678899999998888777753 35888888888888843333332 2
Q ss_pred HHHHHHHhhhC--------CHhhHHHhhccchHHHHHHHHhc--ccCCcC--c-----------hhHHHHHhhcCCCCch
Q psy11496 324 NLFDTLCSCLM--------LEENKERFLKGEGLQLMNLMLRE--RKVSRN--G-----------SLKVLDHAICGPSGKD 380 (607)
Q Consensus 324 Nlfd~L~slL~--------~~~nk~~F~e~eGveLml~mL~~--~k~~r~--~-----------AlkvlD~al~~~~~~~ 380 (607)
=.|+.+|.++- .-..|..|+++.|.-+++..|-. ++..-. + -.++|-.++| ..+.
T Consensus 744 lhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc--enas 821 (2799)
T KOG1788|consen 744 LHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC--ENAS 821 (2799)
T ss_pred HHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh--hcch
Confidence 23777777762 12346779999999888776653 332211 1 1566666666 4566
Q ss_pred hhhhHHhhhchhhhHHhhh
Q psy11496 381 NANKFVDILGLRTIFPLFM 399 (607)
Q Consensus 381 ~c~kFVe~~GLk~lF~lfM 399 (607)
|..+|--.---.++|+++-
T Consensus 822 NrmklhtvITsqtftsLLr 840 (2799)
T KOG1788|consen 822 NRMKLHTVITSQTFTSLLR 840 (2799)
T ss_pred hhhheeeeeeHHHHHHHHH
Confidence 7777655555555555444
No 65
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=36.10 E-value=3.4e+02 Score=26.90 Aligned_cols=138 Identities=14% Similarity=0.228 Sum_probs=69.9
Q ss_pred HHhhccchHHHHHHHHhcccCCcCchhHHHHHhhcCCCCchhhhhHHhh--hchhhhHHhhhcCccc--CcCCCcchhhh
Q psy11496 340 ERFLKGEGLQLMNLMLRERKVSRNGSLKVLDHAICGPSGKDNANKFVDI--LGLRTIFPLFMKTPKK--NRRKIITVEEH 415 (607)
Q Consensus 340 ~~F~e~eGveLml~mL~~~k~~r~~AlkvlD~al~~~~~~~~c~kFVe~--~GLk~lF~lfMkk~kk--~kk~~~~~~e~ 415 (607)
..|.+.+|+.+++.|+-.........-+++.|+++ +..-+.|- -|-+++-+-|.+|--. .++ ......
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~------af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~--~~d~~i 76 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALT------AFVELMEHGIVSWDTLSDSFIKKIASYVNSS--AMDASI 76 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHH------HHHHHHhcCcCchhhccHHHHHHHHHHHccc--cccchH
Confidence 46889999999999999887532222366666665 11122221 1334444445543211 001 113445
Q ss_pred hHHHHHHHHhhhcCCCchhhHHHHHHHhhcchhhHHHHHHhhhh---hhhhHHHHHHHHHhhcCCchhhhhhhhhhhhhh
Q psy11496 416 EEHVVSIKANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFK---YLSKHVVSIIANMLRNCSGPQRQRLLSKFTEND 492 (607)
Q Consensus 416 ~Eh~~siiaSLlr~l~~~~r~Rll~KFvE~~~eK~drL~el~~k---~~~Ehvl~IiaSLl~~l~s~~R~RlLaKFvE~d 492 (607)
..-+++|+-|+.-+-++. +..| +. .-.+++|...... ...--.+.+|-+||..-+...|..+...|-.+.
T Consensus 77 ~q~sLaILEs~Vl~S~~l-y~~V-----~~-evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~ 149 (160)
T PF11841_consen 77 LQRSLAILESIVLNSPKL-YQLV-----EQ-EVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLSQKQ 149 (160)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHH-----hc-cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 556666766665544321 1111 10 0112223322211 111235788999998888777766666654444
No 66
>KOG3678|consensus
Probab=35.45 E-value=96 Score=35.83 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=91.8
Q ss_pred HHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHH
Q psy11496 245 IHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMEN 324 (607)
Q Consensus 245 ~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eN 324 (607)
|+.+--.+-|..|++-++..+-..+-++-|+-+|--++. .+|+++++..+ +-.+|. ++ |.+.|... .--
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~-lA--K~~e~~e~-----aR~ 241 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILN-LA--KEREPVEL-----ARS 241 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhh-hh--hhcCcHHH-----HHH
Confidence 333333567899998888765444667777777766643 58888887544 333443 33 33333321 111
Q ss_pred HHHHHHhhh-CCHhhHHHhhccchHHHHHHHHhcccCC--cCchhHHHHHhhcCCCCchhhhhHHhhhchhhhHHhhhcC
Q psy11496 325 LFDTLCSCL-MLEENKERFLKGEGLQLMNLMLRERKVS--RNGSLKVLDHAICGPSGKDNANKFVDILGLRTIFPLFMKT 401 (607)
Q Consensus 325 lfd~L~slL-~~~~nk~~F~e~eGveLml~mL~~~k~~--r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfMkk 401 (607)
+..+|..+. -+.+.-.++++..|+|-.+.-.++--|. |.-|+-+=+|++- .|-++..+.|+.---+++|++-..+
T Consensus 242 ~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~--~~~a~qrrmveKr~~EWLF~LA~sk 319 (832)
T KOG3678|consen 242 VAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALH--GGQAVQRRMVEKRAAEWLFPLAFSK 319 (832)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhh--chhHHHHHHHHhhhhhhhhhhhcch
Confidence 222333333 2556678999999999887655544332 4457777888876 4678999999999999999865544
No 67
>PRK13266 Thf1-like protein; Reviewed
Probab=34.91 E-value=4.1e+02 Score=27.70 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=69.4
Q ss_pred hhHHHHHHHhhcchhhHHHHHHhhhhhhhhHHHHHHHHHhhcCC-chhhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhh
Q psy11496 434 QRQRLLSKFTENDHEKVDRLLELHFKYLSKHVVSIIANMLRNCS-GPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVDE 512 (607)
Q Consensus 434 ~r~Rll~KFvE~~~eK~drL~el~~k~~~Ehvl~IiaSLl~~l~-s~~R~RlLaKFvE~dyEKvdRL~eLr~~y~~rv~~ 512 (607)
|-..++.+||+.- .-++|.-+||.+|...+- .|+..|--|+=.+. .+ .....
T Consensus 55 Glvt~fd~fm~GY-------------~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~-------~a-------~~~s~ 107 (225)
T PRK13266 55 GLVTVFDRFMQGY-------------RPEEHKDSIFNALCQAVGFDPEQLRQDAERLLE-------LA-------KGKSL 107 (225)
T ss_pred hHHHHHHHHHcCC-------------CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------HH-------hcCCH
Confidence 4556777777642 156788899999999996 88888844432211 10 01100
Q ss_pred hh------hhccchhhh--HHHHhhhhc-cchHHHHhHHHHHHHHhcCch-------hHHHHHHHHHHhcCCChHHHHHH
Q psy11496 513 AD------KEQRDEDED--ENYLRRLEA-GLFTLQLVDYIIVETCAAGAA-------TIKQRVLQIINLRGGSLKTIRHV 576 (607)
Q Consensus 513 ~d------~~~~e~~ed--e~yl~rLda-GLf~LQ~iD~iL~~L~~~~~~-------~i~~ri~~lL~~~~~~~~~I~~~ 576 (607)
.+ .....+.+. ......-.. ...|.+....||+.|...-++ .....+..+...-|.+...+..-
T Consensus 108 ~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KD 187 (225)
T PRK13266 108 KEILSWLTQKALGEPGGLLATLLAIANNSKFKYSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLSKEKVEKD 187 (225)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhh
Confidence 00 000000000 011112122 334577777788877764322 33455566666668888888888
Q ss_pred HHHHHhhcC
Q psy11496 577 MREYAGNLG 585 (607)
Q Consensus 577 l~ey~~~l~ 585 (607)
|.=|..||.
T Consensus 188 L~lYrsnLe 196 (225)
T PRK13266 188 LDLYRSNLE 196 (225)
T ss_pred HHHHHhHHH
Confidence 888887774
No 68
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=33.24 E-value=27 Score=28.78 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.3
Q ss_pred ChHHHHHhhccCCchhHHHHHHHhhhhcccc
Q psy11496 154 AVSSMLELVLHENTDIAVAVVDLLQELTDVD 184 (607)
Q Consensus 154 ~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d 184 (607)
+++.|+.+|.|+|..+...++.-|..+-+++
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~ 62 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRIGDPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 5788899999999999999999999996543
No 69
>KOG2973|consensus
Probab=32.53 E-value=7.3e+02 Score=27.52 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=83.6
Q ss_pred HHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhhhhhHHHhh
Q psy11496 156 SSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFE 235 (607)
Q Consensus 156 ~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV~~~L~iiE 235 (607)
..++++|.-.|.++..++|+.+--||-. ...---.....++.+ +.|-+.-++. -.+|+...-
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~---------l~qL~~~~~~----~~~a~~alV---- 67 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKD---------LTQLLKDLDP----AEPAATALV---- 67 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHH---------HHHHccCccc----ccHHHHHHH----
Confidence 5789999999999999999999999976 211000001122222 3333322222 234444333
Q ss_pred hhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHh----hcChhHHHHhhc-----cccHHHHHHHHh
Q psy11496 236 NLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILC----QKNNENRKLLGD-----LDGIDILLQQLA 306 (607)
Q Consensus 236 Nl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Ill----q~~~~~~~~l~~-----~dgid~LL~~la 306 (607)
|+.. ++.+...+.+. |++.+..++-.. .++-. .+.+++| +.....+..+.. .+|+-.|..
T Consensus 68 nlsq-~~~l~~~ll~~-~~k~l~~~~~~p-~~~la-----d~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~--- 136 (353)
T KOG2973|consen 68 NLSQ-KEELRKKLLQD-LLKVLMDMLTDP-QSPLA-----DLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLAR--- 136 (353)
T ss_pred HHHh-hHHHHHHHHHH-HHHHHHHHhcCc-ccchH-----HHHHHHHHHhccCchHHHHHHHhcccccccchHHHHH---
Confidence 3333 55566666555 777777766542 12222 3444444 323333333332 133333322
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHhhhCCHhhHHHhhccc
Q psy11496 307 YYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGE 346 (607)
Q Consensus 307 ~yrk~Dp~~~eE~E~~eNlfd~L~slL~~~~nk~~F~e~e 346 (607)
.+-.++-+.-.+-.|++++| |.+-..+.+|.-|.+-.
T Consensus 137 ~~~d~~~n~~a~f~ylA~vf---~nls~~~~gR~l~~~~k 173 (353)
T KOG2973|consen 137 AFCDKSYNAYAEFHYLAPVF---ANLSQFEAGRKLLLEPK 173 (353)
T ss_pred HHhCcccccccchhHHHHHH---HHHhhhhhhhhHhcchh
Confidence 22222223335778898887 55556777888887666
No 70
>KOG4224|consensus
Probab=31.98 E-value=8.2e+02 Score=27.92 Aligned_cols=233 Identities=15% Similarity=0.194 Sum_probs=128.2
Q ss_pred HHHhhcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccccccchhhHHHHHHHHHhcchHHHHHHhh
Q psy11496 134 QELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNL 213 (607)
Q Consensus 134 k~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL 213 (607)
-.|..+++.-+--..||..|+++.||+||.--|+|.---+..-+.-+ -.| .-.-+.|+.+ +-.++.-||+-+
T Consensus 189 gaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd-----~~~Rk~Laqa--ep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 189 GALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVD-----RRARKILAQA--EPKLVPALVDLM 260 (550)
T ss_pred HHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh-hhh-----HHHHHHHHhc--ccchHHHHHHHH
Confidence 34555666667778999999999999999999999743332222211 111 1122333333 333555555544
Q ss_pred hhccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHH-hhcChhHHHHh
Q psy11496 214 ERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSIL-CQKNNENRKLL 292 (607)
Q Consensus 214 ~RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Il-lq~~~~~~~~l 292 (607)
. + .++.--...+++ +-||.+ +.+..-.+++.+=++.+++-++... -+.-++-+-+|= +.--|-|.-.+
T Consensus 261 d----~-~s~kvkcqA~lA-Lrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~----~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 261 D----D-GSDKVKCQAGLA-LRNLAS-DTEYQREIVEAGSLPLLVELLQSPM----GPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred h----C-CChHHHHHHHHH-Hhhhcc-cchhhhHHHhcCCchHHHHHHhCcc----hhHHHHHHHHHhhcccccCcccce
Confidence 2 1 122211222222 345555 7788888888887888887776432 233332233331 12233444444
Q ss_pred hccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhh-CCHhhHHHhhccchHHHHHHHHhcccCC-cCchhHHHH
Q psy11496 293 GDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCL-MLEENKERFLKGEGLQLMNLMLRERKVS-RNGSLKVLD 370 (607)
Q Consensus 293 ~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL-~~~~nk~~F~e~eGveLml~mL~~~k~~-r~~AlkvlD 370 (607)
.+.+.+--|.+.|.. .+.+|.+.- ..+.|-.+. .+.-|+..|.+...|+.+.-++...-.+ +....-+|.
T Consensus 330 ~dagfl~pLVrlL~~------~dnEeiqch--AvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRA------GDNEEIQCH--AVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ecccchhHHHHHHhc------CCchhhhhh--HHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 444444445555543 334455553 345566666 4778899999999999999888876422 211222222
Q ss_pred HhhcCCCCchhhhhHHhhhchhhhHH
Q psy11496 371 HAICGPSGKDNANKFVDILGLRTIFP 396 (607)
Q Consensus 371 ~al~~~~~~~~c~kFVe~~GLk~lF~ 396 (607)
.+-. ...-++-|.+.+=+..+.+
T Consensus 402 ~Lal---~d~~k~~lld~gi~~iLIp 424 (550)
T KOG4224|consen 402 QLAL---NDNDKEALLDSGIIPILIP 424 (550)
T ss_pred HHHh---ccccHHHHhhcCCcceeec
Confidence 2211 1335667877765555433
No 71
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=30.51 E-value=4.7e+02 Score=26.96 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=72.0
Q ss_pred hhHHHHHHHhhcchhhHHHHHHhhhhhhhhHHHHHHHHHhhcCC-chhhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhh
Q psy11496 434 QRQRLLSKFTENDHEKVDRLLELHFKYLSKHVVSIIANMLRNCS-GPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVDE 512 (607)
Q Consensus 434 ~r~Rll~KFvE~~~eK~drL~el~~k~~~Ehvl~IiaSLl~~l~-s~~R~RlLaKFvE~dyEKvdRL~eLr~~y~~rv~~ 512 (607)
|-..++.+||+.- .-++|.-+||.+|...+- .|+..|--|+=.+. .. .....
T Consensus 53 Glvt~fd~fm~GY-------------~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~-------~a-------~~~s~ 105 (206)
T PLN03060 53 GFVTVYDQLMDGY-------------PNATDRDAIFKAYIEALGEDPDQYRKDAKKLEE-------WA-------SSQSA 105 (206)
T ss_pred hHHHHHHHHHcCC-------------CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------HH-------hcCCH
Confidence 4456777777641 156788899999999996 88888844432211 11 11100
Q ss_pred hh------hhccchhhhHHHHhhh--hccchHHHHhHHHHHHHHhcCchhHHHHHHHHHHhcCCChHHHHHHHHHHHhhc
Q psy11496 513 AD------KEQRDEDEDENYLRRL--EAGLFTLQLVDYIIVETCAAGAATIKQRVLQIINLRGGSLKTIRHVMREYAGNL 584 (607)
Q Consensus 513 ~d------~~~~e~~ede~yl~rL--daGLf~LQ~iD~iL~~L~~~~~~~i~~ri~~lL~~~~~~~~~I~~~l~ey~~~l 584 (607)
.+ .+.+.+..-..-+.+. ..+..|.+....||+.|....++.=...+..+...-|.+...+..-|.=|..||
T Consensus 106 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LLe~a~~~d~~~l~~l~~~L~ls~~kv~kDL~lYrsnL 185 (206)
T PLN03060 106 SGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPAVLEKLSKALNVSKRSVDRDLDVYRNLL 185 (206)
T ss_pred HHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHhhHHHHHhHH
Confidence 00 0110000001112222 235566788888888887643221123555566666888899999999999888
Q ss_pred C
Q psy11496 585 G 585 (607)
Q Consensus 585 ~ 585 (607)
.
T Consensus 186 e 186 (206)
T PLN03060 186 S 186 (206)
T ss_pred H
Confidence 4
No 72
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=30.29 E-value=5.3e+02 Score=26.77 Aligned_cols=124 Identities=12% Similarity=0.139 Sum_probs=73.5
Q ss_pred hhHHHHHHHhhcchhhHHHHHHhhhhhhhhHHHHHHHHHhhcCC-chhhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhh
Q psy11496 434 QRQRLLSKFTENDHEKVDRLLELHFKYLSKHVVSIIANMLRNCS-GPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVDE 512 (607)
Q Consensus 434 ~r~Rll~KFvE~~~eK~drL~el~~k~~~Ehvl~IiaSLl~~l~-s~~R~RlLaKFvE~dyEKvdRL~eLr~~y~~rv~~ 512 (607)
|-..++.+||+.- .-++|.-+||.+|...+- .|+..|--|+=.+.. + .....
T Consensus 55 Glvt~fd~fm~GY-------------~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~-------a-------~~~s~ 107 (214)
T TIGR03060 55 GLVTVFDRFMEGY-------------RPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQ-------A-------KGKGL 107 (214)
T ss_pred hHHHHHHHHHcCC-------------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------H-------hcCCH
Confidence 4556777777641 156788899999999996 888888444422111 0 11000
Q ss_pred hh------hhccchhhhHHHHhhh-hccch-HHHHhHHHHHHHHhcCchh-------HHHHHHHHHHhcCCChHHHHHHH
Q psy11496 513 AD------KEQRDEDEDENYLRRL-EAGLF-TLQLVDYIIVETCAAGAAT-------IKQRVLQIINLRGGSLKTIRHVM 577 (607)
Q Consensus 513 ~d------~~~~e~~ede~yl~rL-daGLf-~LQ~iD~iL~~L~~~~~~~-------i~~ri~~lL~~~~~~~~~I~~~l 577 (607)
.+ ...... .+..-+..+ ..+-| |.+....||+.|....++. ....+..+...-|.+...+..-|
T Consensus 108 ~~i~~~l~~~~~~~-~~~l~l~~ia~n~~f~YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL 186 (214)
T TIGR03060 108 DEILSWLTQANLSN-GGGDTLQGIAGRHKFKYSRLFAIGLYSLLEEAAPDKDIDEEDLNEILKELSEALGLSYDRVEKDL 186 (214)
T ss_pred HHHHHHHhccccCC-cchhHHHHHhcCCCcchHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhH
Confidence 00 000000 000012223 33444 6788888888887753322 34566667777788999999999
Q ss_pred HHHHhhcC
Q psy11496 578 REYAGNLG 585 (607)
Q Consensus 578 ~ey~~~l~ 585 (607)
.=|..||.
T Consensus 187 ~lYrsnLe 194 (214)
T TIGR03060 187 DLYKSNLE 194 (214)
T ss_pred HHHHhHHH
Confidence 99998884
No 73
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=28.70 E-value=1e+02 Score=29.53 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=52.5
Q ss_pred hhhhhhHHHhhhhhcCChhHHHHHHh-hhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhc-ChhHHHHhhccccHHHHH
Q psy11496 225 DGVHNTLGIFENLCELKPDVIHDIGK-QGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQK-NNENRKLLGDLDGIDILL 302 (607)
Q Consensus 225 ~gV~~~L~iiENl~e~~p~~~~~l~~-~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~-~~~~~~~l~~~dgid~LL 302 (607)
+..-+.++++..++-+-|+++..+.. .++++.++.++..+.....-.. .+|-.|-.. ..+.+..+...+|++||=
T Consensus 58 d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~---~~lell~aAc~d~~~r~~I~~~~~~~L~ 134 (157)
T PF11701_consen 58 DSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQK---AALELLSAACIDKSCRTFISKNYVSWLK 134 (157)
T ss_dssp CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHH---HHHHHHHHHTTSHHHHHCCHHHCHHHHH
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHH---HHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 36777888999999999999988775 5799999999984321111222 344444322 345555556678899987
Q ss_pred HHHh
Q psy11496 303 QQLA 306 (607)
Q Consensus 303 ~~la 306 (607)
+.+.
T Consensus 135 ~~~~ 138 (157)
T PF11701_consen 135 ELYK 138 (157)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 6654
No 74
>KOG2274|consensus
Probab=28.45 E-value=7.4e+02 Score=30.98 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=44.8
Q ss_pred HhcCCCCchhhhhcHHhHHHHHHHHhhcccCCCchHHHHhcCChHHHHHhhccCC-------chhHHHHHHHhhhhcccc
Q psy11496 112 RIKFPDNAEKFMESEIELHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLHEN-------TDIAVAVVDLLQELTDVD 184 (607)
Q Consensus 112 R~K~~d~P~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeN-------tDIai~vi~lL~ELtD~d 184 (607)
=.||.+|| .+-|.+. +-++++.-.+. .|.-+.+ -++++|++.|.-+| .+||+++++.+-+=|-++
T Consensus 580 F~k~s~DP--~V~~~~q--d~f~el~q~~~---~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 580 FLKYSEDP--QVASLAQ--DLFEELLQIAA---NYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred HHHhcCCc--hHHHHHH--HHHHHHHHHHH---hhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 35899999 5655542 33444444333 3333322 36788999998887 789999999888888877
Q ss_pred cc
Q psy11496 185 VL 186 (607)
Q Consensus 185 ~~ 186 (607)
..
T Consensus 652 L~ 653 (1005)
T KOG2274|consen 652 LP 653 (1005)
T ss_pred cc
Confidence 53
No 75
>KOG0414|consensus
Probab=26.37 E-value=2e+02 Score=36.38 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=75.1
Q ss_pred ChHHHHHhhccCCchhHHHHHHHhhhhccccccccc-hhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhh-hhhH
Q psy11496 154 AVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNES-EEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGV-HNTL 231 (607)
Q Consensus 154 ~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~-~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV-~~~L 231 (607)
-+..|+.||.-++-++-.+|++++..+.-...-++. ++..+.+-+ .++++|.+++.-++- +| +.+|
T Consensus 313 ~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~-----~~le~l~erl~Dvsa-------~vRskVL 380 (1251)
T KOG0414|consen 313 QLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRD-----ELLELLRERLLDVSA-------YVRSKVL 380 (1251)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-----HHHHHHHHHhhcccH-------HHHHHHH
Confidence 346677889999999999999987665433322211 334455555 345567777744333 33 4568
Q ss_pred HHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHHH
Q psy11496 232 GIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRK 290 (607)
Q Consensus 232 ~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~~ 290 (607)
.|+.-|+.. +++-... -+.++.....|+..+. .==+-||..+++-+|+..|-.++
T Consensus 381 qv~~~l~~~-~s~p~~~-~~eV~~la~grl~DkS--slVRk~Ai~Ll~~~L~~~Pfs~~ 435 (1251)
T KOG0414|consen 381 QVFRRLFQQ-HSIPLGS-RTEVLELAIGRLEDKS--SLVRKNAIQLLSSLLDRHPFSSE 435 (1251)
T ss_pred HHHHHHHHc-cCCCccH-HHHHHHHHhccccccc--HHHHHHHHHHHHHHHhcCCchhh
Confidence 888888773 3221111 1347778888887653 22455777888999888886553
No 76
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=26.29 E-value=1.1e+02 Score=22.26 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=28.4
Q ss_pred chhhhhHHhhhchhhhHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhh
Q psy11496 379 KDNANKFVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANML 427 (607)
Q Consensus 379 ~~~c~kFVe~~GLk~lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLl 427 (607)
++++..+++.+|+..+-. +|+. ...+..+++++.+..|.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~-ll~~---------~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQ-LLKS---------PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHH-HTTS---------SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHH-HHcC---------CCHHHHHHHHHHHHHHh
Confidence 678999999999999844 5542 24677778877776553
No 77
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=25.47 E-value=1.6e+02 Score=33.10 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=77.9
Q ss_pred hhcHHhHHHHHHHHhhcccCC--CchHHHHhcC--ChHHHHHhhccCCchhHHHHHHHhhhhcccccccc-chhhHHHHH
Q psy11496 123 MESEIELHTTIQELHAIATVP--DLYPLLVQLK--AVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNE-SEEGTESLL 197 (607)
Q Consensus 123 mdSE~dLd~~Ik~l~~La~~P--~LYp~~v~l~--~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e-~~e~~~~lv 197 (607)
...-..+-=++.-++-+...+ +-||.+--.- .+++|..-|.+.++=|..+|+.++..|.+.+...+ .++.|..++
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~ 346 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIIL 346 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHH
Confidence 555555666777777666555 6677743333 78889999999999889999999999997544433 345788888
Q ss_pred HHHHhcchHHHHHHhhhhccCCc------hhhhhhhhhhHHHhhhhhc
Q psy11496 198 TALLDQQVCALLVQNLERLDETV------KEESDGVHNTLGIFENLCE 239 (607)
Q Consensus 198 ~aL~e~~l~~lLv~nL~RldE~~------~~e~~gV~~~L~iiENl~e 239 (607)
+.+.. +++++.-.+... +.....++..+..+|+|.+
T Consensus 347 ~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~ 388 (464)
T PF11864_consen 347 DIIEE------IFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYE 388 (464)
T ss_pred HHHHH------HHhhccccccccccccchHHHHHHHHHHHHHHHHHHh
Confidence 77655 555555444433 4567788888999999987
No 78
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=25.46 E-value=47 Score=30.75 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.2
Q ss_pred chHHHHhcC--ChHHHHHhhccCCchhH
Q psy11496 145 LYPLLVQLK--AVSSMLELVLHENTDIA 170 (607)
Q Consensus 145 LYp~~v~l~--~v~sL~~LLsHeNtDIa 170 (607)
.|.+|-..| .-.-|+.||+|||+++.
T Consensus 37 ~~~eLk~r~gd~r~aLl~LL~hpn~~VR 64 (106)
T PF09450_consen 37 IYDELKSRGGDQRDALLPLLKHPNMQVR 64 (106)
T ss_dssp HHHHHHHSTT-GGGGGGGGGGSS-HHHH
T ss_pred HHHHHHhcCcchHHHHHHHHcCCChhHH
Confidence 355554444 45788999999999996
No 79
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=25.37 E-value=1.6e+02 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.5
Q ss_pred CCcCchhHHHHHhhcCCCCchhhhhHHhh
Q psy11496 360 VSRNGSLKVLDHAICGPSGKDNANKFVDI 388 (607)
Q Consensus 360 ~~r~~AlkvlD~al~~~~~~~~c~kFVe~ 388 (607)
|-...|-++||-... -|..+|.+|+.+
T Consensus 48 PL~~~aR~LLD~V~~--KGe~~C~~fl~a 74 (87)
T cd08787 48 PLSHNARQLLDTVYN--KGEWACQKFLAA 74 (87)
T ss_pred chHHHHHHHHHHHHh--cChhHHHHHHHH
Confidence 334456788888876 578899999987
No 80
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=24.53 E-value=4e+02 Score=28.08 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=22.6
Q ss_pred hhHHHHHHHhhccCCC--CcchhhHHHHHHHHh
Q psy11496 252 GIIQWSLKRLKAKIPF--DGNKLYTSEILSILC 282 (607)
Q Consensus 252 ~LL~wLL~Rl~~~~~~--D~Nk~YasEiL~Ill 282 (607)
..++|++.-+....++ |..-.-+++.|+-+.
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 4799999988876543 466666677887775
No 81
>KOG3678|consensus
Probab=23.85 E-value=3.9e+02 Score=31.19 Aligned_cols=88 Identities=22% Similarity=0.410 Sum_probs=52.4
Q ss_pred hccccHHHHHHHHhhhhcCCCCChH-----HHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhcccCC--cCch
Q psy11496 293 GDLDGIDILLQQLAYYKRHDPNTPE-----EQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKVS--RNGS 365 (607)
Q Consensus 293 ~~~dgid~LL~~la~yrk~Dp~~~e-----E~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k~~--r~~A 365 (607)
-..+|+|.||+.+.. |+..- ....+|.+ .+.+|+++.... |.-.++.+-++.++. ..+.
T Consensus 177 R~~~~lD~Llrmf~a-----Pn~et~vRve~~rlLEq~--------~~aeN~d~va~~-~~~~Il~lAK~~e~~e~aR~~ 242 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQA-----PNLETSVRVEAARLLEQI--------LVAENRDRVARI-GLGVILNLAKEREPVELARSV 242 (832)
T ss_pred hccchHHHHHHHHhC-----CchhHHHHHHHHHHHHHH--------HhhhhhhHHhhc-cchhhhhhhhhcCcHHHHHHH
Confidence 345679999987765 54322 12222222 256788887642 333455555666532 2233
Q ss_pred hHHHHHhhcCCCCchhhhhHHhhhchhhhHH
Q psy11496 366 LKVLDHAICGPSGKDNANKFVDILGLRTIFP 396 (607)
Q Consensus 366 lkvlD~al~~~~~~~~c~kFVe~~GLk~lF~ 396 (607)
.-++.|..- .+.+.|.++|+++||+.++-
T Consensus 243 ~~il~~mFK--HSeet~~~Lvaa~~lD~vl~ 271 (832)
T KOG3678|consen 243 AGILEHMFK--HSEETCQRLVAAGGLDAVLY 271 (832)
T ss_pred HHHHHHHhh--hhHHHHHHHHhhcccchhee
Confidence 455555543 34679999999999999843
No 82
>KOG2759|consensus
Probab=23.65 E-value=1.1e+03 Score=26.91 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhhhCCHhhHHHhhccchHHHHHHHHhccc---CCcCchhHHHHHhhcCCCCchhhhhHHhhhchhh
Q psy11496 317 EEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERK---VSRNGSLKVLDHAICGPSGKDNANKFVDILGLRT 393 (607)
Q Consensus 317 eE~E~~eNlfd~L~slL~~~~nk~~F~e~eGveLml~mL~~~k---~~r~~AlkvlD~al~~~~~~~~c~kFVe~~GLk~ 393 (607)
....|+.=+..||-.+|-.|+.|-.|..++|+.+++..+...+ +-....+=+++.++- .|..|++. .-.++=.
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF---n~~~ae~~-~~~~li~ 244 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF---NPHAAEKL-KRFDLIQ 244 (442)
T ss_pred CCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc---CHHHHHHH-hhccHHH
Confidence 3445565566788888999999999999999999999886222 112235667776654 36667665 4444433
Q ss_pred hHHhhhcCcccCcCCCcchhhhhHHHHHHHHhhhcCC-C-ch---hhHHHHHHHhhcchhhHHHHHHhhhhhhhhHH
Q psy11496 394 IFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNC-S-GP---QRQRLLSKFTENDHEKVDRLLELHFKYLSKHV 465 (607)
Q Consensus 394 lF~lfMkk~kk~kk~~~~~~e~~Eh~~siiaSLlr~l-~-~~---~r~Rll~KFvE~~~eK~drL~el~~k~~~Ehv 465 (607)
.++-+.+- ..=|-++-|+.+.++|+ + ++ -+.-.+...+-+.-.|+-.+++- .+|+.|-+
T Consensus 245 ~L~~Ivk~------------~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~-rkysDEDL 308 (442)
T KOG2759|consen 245 DLSDIVKE------------STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE-RKYSDEDL 308 (442)
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh-cCCCcHHH
Confidence 32333321 11123444555555554 2 21 23345666676666666333331 23544443
No 83
>KOG3036|consensus
Probab=23.47 E-value=9.6e+02 Score=25.93 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=46.9
Q ss_pred hhHHHHHhhcCCCCchhhhhHHhhhchhhhHHhhhcCcccCcCCCcchhhhh-HHHHHHHHhhhcCCCc--------hhh
Q psy11496 365 SLKVLDHAICGPSGKDNANKFVDILGLRTIFPLFMKTPKKNRRKIITVEEHE-EHVVSIKANMLRNCSG--------PQR 435 (607)
Q Consensus 365 AlkvlD~al~~~~~~~~c~kFVe~~GLk~lF~lfMkk~kk~kk~~~~~~e~~-Eh~~siiaSLlr~l~~--------~~r 435 (607)
|+.+|-|.. .+|+.+..|+++-=-=++|+ ||....|.++ .|.+ =..+|.|++|+.+=.. .+-
T Consensus 99 aL~LlQcvA---SHpdTr~~FL~A~iPlylYp-fL~Tt~~~r~-----fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI 169 (293)
T KOG3036|consen 99 ALALLQCVA---SHPDTRRAFLRAHIPLYLYP-FLNTTSKSRP-----FEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI 169 (293)
T ss_pred HHHHHHHHh---cCcchHHHHHHccChhhhHH-hhhccccCCc-----hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 455555554 47899999999976666666 5554433322 2221 1357889988776432 244
Q ss_pred HHHHHHHhhcchhhH
Q psy11496 436 QRLLSKFTENDHEKV 450 (607)
Q Consensus 436 ~Rll~KFvE~~~eK~ 450 (607)
+.+|-|-||..-|=.
T Consensus 170 VPlCLrime~GSelS 184 (293)
T KOG3036|consen 170 VPLCLRIMESGSELS 184 (293)
T ss_pred HHHHHHHHhcccHHH
Confidence 567888887765533
No 84
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=23.33 E-value=1.3e+02 Score=28.49 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHHHHHhcchHHHHHHhhhhccCCc---hhhhhhhhhhHHHhhhhhcCChhHHHHHHh-hhhHHHHHHHhhccCCCCcc
Q psy11496 195 SLLTALLDQQVCALLVQNLERLDETV---KEESDGVHNTLGIFENLCELKPDVIHDIGK-QGIIQWSLKRLKAKIPFDGN 270 (607)
Q Consensus 195 ~lv~aL~e~~l~~lLv~nL~RldE~~---~~e~~gV~~~L~iiENl~e~~p~~~~~l~~-~~LL~wLL~Rl~~~~~~D~N 270 (607)
..++.+++++.++.|++.|.++.... +.+..-.|.++..+=.++..... ...+.. ...+.++..-+... .-.-
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L~s~--~~~~ 174 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSLDSP--NIKT 174 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--TT--SHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHHCCC--CHHH
Confidence 45777888899999999998887642 35566678888888888864333 444444 45777777777643 2245
Q ss_pred hhhHHHHHHHHh
Q psy11496 271 KLYTSEILSILC 282 (607)
Q Consensus 271 k~YasEiL~Ill 282 (607)
+..+.|+|+.++
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666677777763
No 85
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.21 E-value=88 Score=29.46 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=29.6
Q ss_pred CCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhh
Q psy11496 142 VPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQEL 180 (607)
Q Consensus 142 ~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~EL 180 (607)
+|.-=..+-++|+=..++.|++|+|.+|.-.|+--+|-|
T Consensus 75 ~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 75 YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp -GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 466544555799999999999999999988877766654
No 86
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=22.52 E-value=4.6e+02 Score=23.40 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=57.8
Q ss_pred cCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccc----cccchhhHHHHHHHHHhc--chHHHHHHhhh
Q psy11496 141 TVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDV----LNESEEGTESLLTALLDQ--QVCALLVQNLE 214 (607)
Q Consensus 141 ~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~----~~e~~e~~~~lv~aL~e~--~l~~lLv~nL~ 214 (607)
..|+-+|.| +..+++++.. |..-..-++.+|..+.++=. .......-..+.++|-++ .+++.+.+-+.
T Consensus 19 ~~P~~Wp~~-----l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~ 92 (148)
T PF08389_consen 19 DWPQQWPDF-----LEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILS 92 (148)
T ss_dssp HTTTTSTTH-----HHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HChhhCchH-----HHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777766 4667777766 33333344444444333211 111122334455555443 34455555554
Q ss_pred hccCCchhhhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhc
Q psy11496 215 RLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKA 263 (607)
Q Consensus 215 RldE~~~~e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~ 263 (607)
.-.... ...-+..+|.++...+. .-+ ...+.++.+++++++=+..
T Consensus 93 ~~~~~~--~~~~~~~~L~~l~s~i~-~~~-~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 93 QSSSEA--NEELVKAALKCLKSWIS-WIP-IELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHCHCC--HHHHHHHHHHHHHHHTT-TS--HHHHHSSSHHHHHHHHTTS
T ss_pred hhcccc--HHHHHHHHHHHHHHHHH-hCC-HHHhccHHHHHHHHHHcCC
Confidence 333221 24556677777777776 211 2334445688888887743
No 87
>KOG4464|consensus
Probab=22.44 E-value=5.8e+02 Score=29.35 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=46.4
Q ss_pred hhcChhHHHHhhccccHHHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHhhhCCHhhHHH-hhccchHHHHHHHHhccc
Q psy11496 282 CQKNNENRKLLGDLDGIDILLQQLAYYKRHD-PNTPEEQEMMENLFDTLCSCLMLEENKER-FLKGEGLQLMNLMLRERK 359 (607)
Q Consensus 282 lq~~~~~~~~l~~~dgid~LL~~la~yrk~D-p~~~eE~E~~eNlfd~L~slL~~~~nk~~-F~e~eGveLml~mL~~~k 359 (607)
+=+|+-.|.++.+..-...+++++..|+.+. |.+. +-=.+-=+| |-. +..+..|.+ +.++.|+++|-..+-.+.
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~-~~~dlrLLf--llt-ale~~~Rsql~~~l~Gl~~lt~~led~l 200 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDS-SIFDLRLLF--LLT-ALETDHRSQLIAELLGLELLTNWLEDKL 200 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccc-hhhHHHHHH--HHH-HhhHHHHHHHHHHhcccHHHHHHhhccc
Confidence 4456777777777777889999888876543 3433 221221111 001 135677755 578999999988777654
No 88
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=22.39 E-value=1.8e+02 Score=31.12 Aligned_cols=53 Identities=26% Similarity=0.403 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhcccC-CC--chHHHHhcCChHHHHHhhccCCchhHHH---HHHHhhhhcc
Q psy11496 128 ELHTTIQELHAIATV-PD--LYPLLVQLKAVSSMLELVLHENTDIAVA---VVDLLQELTD 182 (607)
Q Consensus 128 dLd~~Ik~l~~La~~-P~--LYp~~v~l~~v~sL~~LLsHeNtDIai~---vi~lL~ELtD 182 (607)
=.-++|..|..|.|. |. +. .++ -..++.|+.||.|++.|+-++ +|-+|.|+..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 366789999998865 54 33 222 235788999999999998655 5667777776
No 89
>KOG2274|consensus
Probab=21.67 E-value=1.9e+02 Score=35.69 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=48.2
Q ss_pred CchhhhhcHHhHHHHHHHHhhccc--CCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhccccc
Q psy11496 118 NAEKFMESEIELHTTIQELHAIAT--VPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDV 185 (607)
Q Consensus 118 ~P~KFmdSE~dLd~~Ik~l~~La~--~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~ 185 (607)
+|.+++-|.+.- ..+.+|+ +|+-+|+++ +-++.+|+--|.+=+-.+.++|.||+|+=+
T Consensus 101 ~sn~ki~~~vay-----~is~Ia~~D~Pd~WpElv-----~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 101 DSNSKIRSAVAY-----AISSIAAVDYPDEWPELV-----PFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred ccccccchHHHH-----HHHHHHhccCchhhHHHH-----HHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 899999998864 3455665 499999994 778899988999999999999999998754
No 90
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.47 E-value=1.1e+03 Score=25.83 Aligned_cols=185 Identities=16% Similarity=0.228 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhhhhhhhhHHHhhhhhcCC----h-hHHHHHHhh-h-hHHHHHHHhh
Q psy11496 190 EEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELK----P-DVIHDIGKQ-G-IIQWSLKRLK 262 (607)
Q Consensus 190 ~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~~gV~~~L~iiENl~e~~----p-~~~~~l~~~-~-LL~wLL~Rl~ 262 (607)
.+....|+..+...+++.+|+.+|..|+=...-|...|++ |++--+ . ..++-+.++ . ++.+|++=-.
T Consensus 62 ~e~v~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~------~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~ 135 (335)
T PF08569_consen 62 PEQVAQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFS------NLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE 135 (335)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHH------HHHT--BTTB--HHHHHHHT--THHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHH------HHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc
Confidence 3456789999999999999999999998754444444444 444322 1 235556665 3 8888887666
Q ss_pred ccCCCCcchhhHHHHHHHHhhcChhHHHHhhccccHHHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHhhhC-CHhhHHH
Q psy11496 263 AKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLM-LEENKER 341 (607)
Q Consensus 263 ~~~~~D~Nk~YasEiL~Illq~~~~~~~~l~~~dgid~LL~~la~yrk~Dp~~~eE~E~~eNlfd~L~slL~-~~~nk~~ 341 (607)
.. .-.+.|..+|-.++.. +..+..+-..+-+..+.+.+.. ..=+.....|.++-.+|. .+.--..
T Consensus 136 ~~----dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~---------~~Fdiasdaf~t~~~llt~hk~~~a~ 201 (335)
T PF08569_consen 136 NP----DIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQL---------PNFDIASDAFSTFKELLTRHKKLVAE 201 (335)
T ss_dssp ST----TTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTS---------SSHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred Cc----cccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcC---------CccHhHHHHHHHHHHHHhccHHHHHH
Confidence 43 2456666777766654 3333233222223333332221 133455555666666663 4444455
Q ss_pred hhccchH---HHHHHHHhccc-CCcCchhHHHHHhhcCCCCchhhhhHHhh-hchhhh
Q psy11496 342 FLKGEGL---QLMNLMLRERK-VSRNGSLKVLDHAICGPSGKDNANKFVDI-LGLRTI 394 (607)
Q Consensus 342 F~e~eGv---eLml~mL~~~k-~~r~~AlkvlD~al~~~~~~~~c~kFVe~-~GLk~l 394 (607)
|+..+== +....+|...- -.|..|+|+|.-++.....-..-.+||.. .-|+.|
T Consensus 202 fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~ 259 (335)
T PF08569_consen 202 FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLM 259 (335)
T ss_dssp HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHH
Confidence 5533222 22334554432 33556899998888743222333466654 666776
No 91
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.08 E-value=96 Score=34.30 Aligned_cols=45 Identities=16% Similarity=0.378 Sum_probs=36.6
Q ss_pred hhcccCCCchHHHHhcCChHHHHHhhccCCchhHHHHHHHhhhhc
Q psy11496 137 HAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELT 181 (607)
Q Consensus 137 ~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELt 181 (607)
+++-..|+--..+.+-|+=..++.|++|+|.||--.++.-++-+.
T Consensus 383 ~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 383 QLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 445567777778889999999999999999999888777766543
No 92
>PF05334 DUF719: Protein of unknown function (DUF719); InterPro: IPR007998 This family consists of several eukaryotic proteins of unknown function.
Probab=20.94 E-value=1e+02 Score=31.06 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=34.7
Q ss_pred hhccchHHHHhHHHHHHHHhcCchhHHHHHHHHH---HhcCCChHHHHHHHHHHH
Q psy11496 530 LEAGLFTLQLVDYIIVETCAAGAATIKQRVLQII---NLRGGSLKTIRHVMREYA 581 (607)
Q Consensus 530 LdaGLf~LQ~iD~iL~~L~~~~~~~i~~ri~~lL---~~~~~~~~~I~~~l~ey~ 581 (607)
+.+||-+|..|--=-..+.+++||+.+.+= .+| ..++.++. ++|||-.
T Consensus 97 lsGGLDaLE~IGKKTM~VL~E~DPG~kktr-~l~~~~~~~~~~LS---qvLREAK 147 (181)
T PF05334_consen 97 LSGGLDALEFIGKKTMDVLQEGDPGFKKTR-ALMGLEANRPSNLS---QVLREAK 147 (181)
T ss_pred hcCcHHHHHHhhHHHHHHHhccCcccchhh-hhhccccCCcchHH---HHHHHHH
Confidence 778999999999999999999999997652 233 23444544 5555554
No 93
>KOG0946|consensus
Probab=20.81 E-value=7.1e+02 Score=30.83 Aligned_cols=185 Identities=23% Similarity=0.250 Sum_probs=97.6
Q ss_pred HHHhcCCCCchhhhhc--HHhHHH---HHHHHhh-cccCC-CchHHHHhc-CChHHHHHhhccCCchhHHHHHHHhhhhc
Q psy11496 110 EMRIKFPDNAEKFMES--EIELHT---TIQELHA-IATVP-DLYPLLVQL-KAVSSMLELVLHENTDIAVAVVDLLQELT 181 (607)
Q Consensus 110 e~R~K~~d~P~KFmdS--E~dLd~---~Ik~l~~-La~~P-~LYp~~v~l-~~v~sL~~LLsHeNtDIai~vi~lL~ELt 181 (607)
++=||.+|+-+=-|.+ |.|.+- +|+-++. |++-| ++-..+..+ -+|++|+.||.----=|..++|=+|.|||
T Consensus 115 e~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 115 EQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred HHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence 4445555554444433 444443 3444433 45555 676666666 48889998885444457789999999998
Q ss_pred cccccccchhhHHHHHHHHHhcchHHHHHHhhhhccCCchhhh-hhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHH
Q psy11496 182 DVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEES-DGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKR 260 (607)
Q Consensus 182 D~d~~~e~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~e~-~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~R 260 (607)
-.-. ....||-. + ++++-|.+-++ |..-.|. -=|..||.++=||+--+.+-..-|.+.+.++-|.+-
T Consensus 195 k~n~------~IQKlVAF--E-NaFerLfsIIe---eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~kl 262 (970)
T KOG0946|consen 195 KDNS------SIQKLVAF--E-NAFERLFSIIE---EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKL 262 (970)
T ss_pred ccCc------hHHHHHHH--H-HHHHHHHHHHH---hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhh
Confidence 7532 12222211 1 22333323221 1111111 337889999999998555555556666666666655
Q ss_pred hhccC-------CCCcchhhH----HHHHHHHh--hcCh----hHHHHhhccccHHHHHHHHh
Q psy11496 261 LKAKI-------PFDGNKLYT----SEILSILC--QKNN----ENRKLLGDLDGIDILLQQLA 306 (607)
Q Consensus 261 l~~~~-------~~D~Nk~Ya----sEiL~Ill--q~~~----~~~~~l~~~dgid~LL~~la 306 (607)
+..-. ..+..++-+ -.|+..|+ .+++ +|+..+.+..+++.|...+-
T Consensus 263 L~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 263 LSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred cCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence 44321 123333322 22333333 1111 34456667777887776553
No 94
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=20.50 E-value=8.1e+02 Score=26.52 Aligned_cols=124 Identities=12% Similarity=0.109 Sum_probs=68.1
Q ss_pred hhHHHHHHHhhcchhhHHHHHHhhhhh-hhhHHHHHHHHHhhcCC-chhhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhh
Q psy11496 434 QRQRLLSKFTENDHEKVDRLLELHFKY-LSKHVVSIIANMLRNCS-GPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVD 511 (607)
Q Consensus 434 ~r~Rll~KFvE~~~eK~drL~el~~k~-~~Ehvl~IiaSLl~~l~-s~~R~RlLaKFvE~dyEKvdRL~eLr~~y~~rv~ 511 (607)
|-..++..||+. | .++|.-+||.+|...+- .|+..|--|+=.+. .. ....
T Consensus 106 GlVtvfd~fm~G--------------Y~Pee~~~~IF~Alc~a~g~Dp~qyr~dA~~l~~-------~A-------~~~s 157 (283)
T PLN00047 106 GFVTVYDQLMEG--------------YPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEE-------WA-------RSQT 157 (283)
T ss_pred hhHHHHHHHHcc--------------CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------HH-------hcCC
Confidence 455667777764 4 36888899999999996 88888743332211 11 0000
Q ss_pred hhhh--hccchhhhHHHHhhh------hccchHHHHhHHHHHHHHhcCchhHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q psy11496 512 EADK--EQRDEDEDENYLRRL------EAGLFTLQLVDYIIVETCAAGAATIKQRVLQIINLRGGSLKTIRHVMREYAGN 583 (607)
Q Consensus 512 ~~d~--~~~e~~ede~yl~rL------daGLf~LQ~iD~iL~~L~~~~~~~i~~ri~~lL~~~~~~~~~I~~~l~ey~~~ 583 (607)
..+- -.....+-..-+..+ ..+..|-+....||+.|....++.-...+..+...-|.+...+..-|.=|..|
T Consensus 158 ~~~l~~~l~~~~~l~~~l~~IA~~a~~~~~f~YSRlfAIGLf~LLe~a~~~d~~~l~~l~e~Lgls~~kv~KDLdlYrsn 237 (283)
T PLN00047 158 GSSLVDFSSKEGEIEGILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPTALEKLCAALNINKRSVDRDLDVYRGL 237 (283)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHHHHHhhHHHHHhH
Confidence 0000 000000001112222 23456677888888877764332222345555556677777777777777777
Q ss_pred cC
Q psy11496 584 LG 585 (607)
Q Consensus 584 l~ 585 (607)
|+
T Consensus 238 Le 239 (283)
T PLN00047 238 LS 239 (283)
T ss_pred HH
Confidence 64
No 95
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=20.42 E-value=1.7e+02 Score=32.11 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=31.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhccchhhhHHHHhhhhccchHHHHhHHHHH
Q psy11496 486 SKFTENDHEKVDRLLELHFKYLSKVDEADKEQRDEDEDENYLRRLEAGLFTLQLVDYIIV 545 (607)
Q Consensus 486 aKFvE~dyEKvdRL~eLr~~y~~rv~~~d~~~~e~~ede~yl~rLdaGLf~LQ~iD~iL~ 545 (607)
.-.|++|+++-++-++.++.|.+-++. .-.|+||.||.++-
T Consensus 276 ~~Lv~~D~~~Ae~h~~FYdEYlavmdl-------------------~aEfYLqTid~VFq 316 (415)
T COG4553 276 LSLVKNDGDSAEKHREFYDEYLAVMDL-------------------TAEFYLQTIDEVFQ 316 (415)
T ss_pred HHHHcccchhHHHHHHHHHHHHHHccc-------------------hHHHHHHHHHHHHH
Confidence 345789999999999999888665522 13488888888775
No 96
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.42 E-value=4.7e+02 Score=29.97 Aligned_cols=129 Identities=13% Similarity=0.268 Sum_probs=82.0
Q ss_pred HHHhcCChHHHHHhhccC-CchhHHHHHHHhhhhcccccccc----chhhHHHHHHHHHhcchHHHHHHhhhhccCCchh
Q psy11496 148 LLVQLKAVSSMLELVLHE-NTDIAVAVVDLLQELTDVDVLNE----SEEGTESLLTALLDQQVCALLVQNLERLDETVKE 222 (607)
Q Consensus 148 ~~v~l~~v~sL~~LLsHe-NtDIai~vi~lL~ELtD~d~~~e----~~e~~~~lv~aL~e~~l~~lLv~nL~RldE~~~~ 222 (607)
-|.+.+.++.|+.+|+-+ ..|+-..|-++|.+++-.-...- .--+.+.|+..|+....++.|++++ |++. .
T Consensus 57 wL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~m--L~~~--~ 132 (475)
T PF04499_consen 57 WLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIM--LNSQ--G 132 (475)
T ss_pred HHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHH--hcCC--C
Confidence 345678999999999621 25677888899999875543211 1123578999999998888888877 3221 1
Q ss_pred hhhhhhhhHHHhhhhhcCChhHHHHHHhhhhHHHHHHHhhccCCCCcchhhHHHHHHHHhhcChhHH
Q psy11496 223 ESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENR 289 (607)
Q Consensus 223 e~~gV~~~L~iiENl~e~~p~~~~~l~~~~LL~wLL~Rl~~~~~~D~Nk~YasEiL~Illq~~~~~~ 289 (607)
..++.|+++|+-.|+--.++--+.. +...+....+.++.-+|-..+|.++...-+...
T Consensus 133 -~s~lvn~v~IlieLIRknnsdy~~~--------~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~ 190 (475)
T PF04499_consen 133 -GSSLVNGVSILIELIRKNNSDYDEQ--------LYTTIESHPPSERDPIYLGTLLKAFSPRLPDFH 190 (475)
T ss_pred -cchHHHHHHHHHHHHHhcccccchh--------hccccccCCCCccchhhHHHHHHHHHHhHHHHH
Confidence 6789999999988884221111100 113333334677788888788877755444433
Done!