RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11496
(607 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 84.7 bits (209), Expect = 4e-17
Identities = 110/604 (18%), Positives = 186/604 (30%), Gaps = 218/604 (36%)
Query: 110 EMRIKF----PDNAEKFME-----SEIELHTTIQELHAIATVPDLYPLLVQLKAVSSMLE 160
+++ +F P+ E F + EL L ++++ + P ++ +L
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVE--PS--KVGQFDQVLN 85
Query: 161 LVLHE-------NTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNL 213
L L E DI LLQE + T+ L+ + + +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQEND------TTLVKTKELIKNYI--TARIMAKRPF 137
Query: 214 ER-----LDETVKEESDGVH-------NTLGIFENLCEL----KP---DVIHDIGKQGII 254
++ L V E + + NT FE L +L D+I +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET--- 194
Query: 255 QWSLKRLKAKIPFDGNKLYTS--EILSILCQKNNENRKLLGDLDGID--------ILLQQ 304
L L + D K++T IL L EN D D + I + Q
Sbjct: 195 ---LSEL-IRTTLDAEKVFTQGLNILEWL-----ENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 305 LAYY----KRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKV 360
LA+Y K TP E L L +GL V
Sbjct: 246 LAHYVVTAKLLG-FTPGE------LRSYLKGATG---------HSQGL-----------V 278
Query: 361 SRNGSLKVLDHAIC---GPSGKD---NANKFVDIL---GLRT--IFPLFMKTPKKNRRKI 409
+ A+ S + + K + +L G+R +P P
Sbjct: 279 T----------AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS------ 322
Query: 410 ITVEEHEEHVVSIKANML--RNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLSKHV-V 466
+E+ E+ + + ML N + Q Q ++K N H K V +
Sbjct: 323 -ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAG-----------KQVEI 368
Query: 467 SIIANMLRN--CSGPQR-----QRLLSK-------------FTENDHEKVD---RLLEL- 502
S++ N +N SGP + L K F+E K+ R L +
Sbjct: 369 SLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFSNRFLPVA 424
Query: 503 ---HFKYLSKVDE---ADKEQRDEDEDENYLR------------RLEAGLFTLQLVDYII 544
H L + D + + + ++ R+ +G + ++VD II
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 545 V-----ETCAAGAAT------------IKQRVLQIINLRGGSLKTIRHVMREYAGNLGDV 587
ET AT + + + G +R ++ AG L D+
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG-----VRVIV---AGTL-DI 535
Query: 588 GDTD 591
D
Sbjct: 536 NPDD 539
Score = 42.0 bits (98), Expect = 7e-04
Identities = 38/296 (12%), Positives = 84/296 (28%), Gaps = 110/296 (37%)
Query: 109 REMRIKFP------DNAEKFMES---------------EIELHTTIQELHAI-------- 139
++ + A+ + + +H ++ I
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 140 -ATVPD----LYPLLVQLKAVSSML-------ELVLHENTDIAVAVVD--LLQELTDVDV 185
T+ D + ++ S+ L + T A+ +++ ++L
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL----- 1747
Query: 186 LNESEEGTE---------SL--LTALLDQQVC---AL-------LVQNLER---LDETVK 221
+G SL AL + +V R + V
Sbjct: 1748 ---KSKGLIPADATFAGHSLGEYAAL----ASLADVMSIESLVEVVF--YRGMTMQVAVP 1798
Query: 222 EESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSIL 281
+ G N G+ + P + Q +Q+ ++R+ + T ++ I+
Sbjct: 1799 RDELGRSNY-GM----IAINPGRVAASFSQEALQYVVERVGKR---------TGWLVEIV 1844
Query: 282 CQKNNENRK-----LLGDLDGIDILLQQLAYYKRHD------PNTPEEQEMMENLF 326
N N + GDL +D + L + K + +E+ +LF
Sbjct: 1845 ----NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 33.1 bits (75), Expect = 0.31
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 36/131 (27%)
Query: 464 HVVSIIANMLRNCSGPQRQRLLSKFTENDHEKVDRL---------LELHFKYLSKVDEAD 514
HV+ + S +L +F + E + EL K+L V
Sbjct: 18 HVLLVPTASFFIAS-----QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS--- 69
Query: 515 KEQRDEDEDENYLRRLEAGL--FT---LQLVDYIIVETCAAGAATIKQRVLQIINLRGGS 569
+ + + + L L F L+ D + AA +++ +
Sbjct: 70 -SLVEPSKVGQFDQVLNLCLTEFENCYLEGND---IHALAA----------KLLQENDTT 115
Query: 570 LKTIRHVMREY 580
L + +++ Y
Sbjct: 116 LVKTKELIKNY 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 2e-15
Identities = 78/521 (14%), Positives = 155/521 (29%), Gaps = 149/521 (28%)
Query: 127 IELHTTIQELHAIATVPDLYPLLVQ---LKAVSSMLELVLHENTDIAVAVVDLLQELTDV 183
++ T + + V K V M + +L + +E+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK------------EEIDHI 54
Query: 184 DVLNESEEGTESLLTALLDQQ-------VCALLVQNLERLDETVKEES------------ 224
+ ++ GT L LL +Q V +L N + L +K E
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 225 --DGVHNTLGIF---------------ENLCELKPD---VIHD---IGKQGIIQWSLKRL 261
D ++N +F + L EL+P +I GK +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 262 KAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQL-AYYKRHDPNTPEEQE 320
K + D + + L + + + +L+ L + DPN +
Sbjct: 175 KVQCKMDFKIFWLN----------------LKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 321 MMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLRERKVSRNGSLKVLDHAICGPSGKD 380
N+ L + + L L+ + + L VL + +
Sbjct: 219 HSSNIK------LRIHSIQAE--------LRRLLKSKPYEN---CLLVLLN-VQNAK--- 257
Query: 381 NANKFVDILGLRTIFPLFMKTPKKNRRKIIT---VEEHEEHVVSIKANMLRNCSGPQRQR 437
N F ++ + + + T R K +T H+ + + +
Sbjct: 258 AWNAF-NL-SCKIL----LTT----RFKQVTDFLSAATTTHISLDH--HSMTLTPDEVKS 305
Query: 438 LLSKFTENDHEKVDRLLELHFKYLSKHVVSIIANMLRNCSGPQRQRLLSKFTENDHEKVD 497
LL K+ + + + R + + +SIIA +R+ G + + +K+
Sbjct: 306 LLLKYLDCRPQDLPREVLTT----NPRRLSIIAESIRD--GLAT---WDNWKHVNCDKLT 356
Query: 498 RLLELHFKYLSKVDEADKEQRDEDEDENYLRRLEAGLF---------TLQLV-------- 540
++E L + E RL +F L L+
Sbjct: 357 TIIESSLNVL-----------EPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 541 DYIIVETCAAGAATIKQRVLQIINLRGGSLKTIRHVMREYA 581
++V + KQ I++ L+ + EYA
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Score = 75.7 bits (185), Expect = 2e-14
Identities = 87/576 (15%), Positives = 174/576 (30%), Gaps = 117/576 (20%)
Query: 5 ELLSYKPKSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERL--EQEKIR 62
L K + +K +++ + K S ++M ++ +RL + +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 63 QEELEREKQEEEKIKTLIEETEEKEVLNELMLK--KMILLFEKRTLKNREMRIKFPDN-- 118
+ + R + + + L+E K VL + +L K + + + +++ K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSYKVQCKMDFKIF 185
Query: 119 ---------AEKFMESEIELHTTI-QELHAIATVPDLYPLLVQLKAVSSMLELVLHENTD 168
E +E +L I + + L + + + L+ + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYE 244
Query: 169 IAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVH 228
+ V+ +Q + N + LLT +QV + ++ S +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNL---SCKILLTTR-FKQV-TDFLSAATTTHISLDHHSMTLT 299
Query: 229 --NTLGIFEN------------LCELKPDVIHDIG---KQGIIQWSLKRLKAKIPFDGNK 271
+ + P + I + G+ W K + +K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNWKH---VNCDK 354
Query: 272 LYTSEILSILCQKNNENRKLLGDL----DGIDILLQQLAYYKRHDPNTPEEQEMMENLFD 327
L T S+ + E RK+ L I L+ D + ++ L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHK 413
Query: 328 TLCSCLMLEENKERFLKGEGLQLMNLM-------LRERKVSRNGSLKVLDHAICGPSGKD 380
L+ ++ KE + + L + L V K D P D
Sbjct: 414 ---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 381 N------------ANKFVDILGLRTIFPL---FMKTPKKNRRKIITVEEHEEHVVSIKAN 425
+ R +F L F++ +KI SI N
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLE------QKIRHDSTAWNASGSI-LN 522
Query: 426 MLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLSKHVVSIIANMLRNCSGPQRQRLL 485
L Q+ + + ++ K +RL+ +L K ++I
Sbjct: 523 TL------QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI---------------C 561
Query: 486 SKFTENDHEKVDRLLE--LHFKYLSKVDEADKE-QR 518
SK+T LL L + + +EA K+ QR
Sbjct: 562 SKYT--------DLLRIALMAEDEAIFEEAHKQVQR 589
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 51.3 bits (123), Expect = 6e-07
Identities = 44/258 (17%), Positives = 86/258 (33%), Gaps = 52/258 (20%)
Query: 142 VPDLYPLL------VQLKAVSSMLELVLHENTDIAV--------AVVDLLQELTDVDV-- 185
+P+L LL V KA + +L E + A+ A+V +Q DV+
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 186 --------LNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENL 237
L+ EG A+ LV+ L ++V + NL
Sbjct: 79 CTAGTLHNLSHHREGLL----AIFKSGGIPALVKMLGSPVDSVLF------YAITTLHNL 128
Query: 238 CELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDG 297
+ + G +Q + L T++ L IL N E++ ++ G
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 298 IDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-LMNLMLR 356
L+ + T ++++ L + NK ++ G+Q L +
Sbjct: 187 PQALVNIM--------RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-- 236
Query: 357 ERKVSRNGSLKVLDHAIC 374
+ S +++ + +
Sbjct: 237 -----TDPSQRLVQNCLW 249
Score = 34.8 bits (80), Expect = 0.082
Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 52/273 (19%)
Query: 136 LHAIATVPDLYPLLV-QLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTE 194
LH + + + V + M+ L+ N D LQ L + ++
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184
Query: 195 SLLTALLD----------QQVCALLVQNLERLDETVKE--ESDGV--------------- 227
AL++ + +++ L E+ G+
Sbjct: 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 244
Query: 228 HNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNE 287
N L NL + G +G++ ++ L + + ILS L N +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYK 299
Query: 288 NRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSC----LMLEENKERFL 343
N+ ++ + GI+ L++ + + +++ E L E +
Sbjct: 300 NKMMVCQVGGIEALVRTVL-------RAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352
Query: 344 KGEGLQ-LMNLMLRERKVSRNGSLKVLDHAICG 375
GL ++ L+ S L A G
Sbjct: 353 LHYGLPVVVKLL-------HPPSHWPLIKATVG 378
Score = 30.5 bits (69), Expect = 1.7
Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 52/248 (20%)
Query: 148 LLVQLKAVSSMLELVL--HENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQV 205
++ Q+ + +++ VL + DI + L+ LT + E A+
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT------SRHQEAEMAQNAVRLHYG 356
Query: 206 CALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQ---------- 255
++V+ L ++ T+G+ NL L P + +QG I
Sbjct: 357 LPVVVKLLHPPSHWPLIKA-----TVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAH 410
Query: 256 --------WSLKRLKAKIPFDGNKL--YTSEILSILCQKNNENRKLLGDLDGIDILLQQL 305
+ + ++ + L IL ++ NR ++ L+ I + +Q L
Sbjct: 411 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLL 469
Query: 306 AYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-LMNLMLRERKVSRNG 364
+ + LC +E E L L+ +
Sbjct: 470 ---------YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL-------HSR 513
Query: 365 SLKVLDHA 372
+ V +A
Sbjct: 514 NEGVATYA 521
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 49.9 bits (119), Expect = 2e-06
Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 38/251 (15%)
Query: 142 VPDLYPLL------VQLKAVSSMLELVLHENTDIAV--------AVVDLLQELTDVDVLN 187
+P+L LL V KA + +L E + A+ A+V +Q DV+
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA- 74
Query: 188 ESEEGTESLLTALLDQQVCALLVQN--LERLDETVKEESDGV-HNTLGIFENLCELKPDV 244
+L ++ + ++ + L + + D V + NL +
Sbjct: 75 --RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132
Query: 245 IHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQ 304
+ G +Q + L T++ L IL N E++ ++ G L+
Sbjct: 133 KMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190
Query: 305 LAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-LMNLMLRERKVSRN 363
+ T ++++ L + NK ++ G+Q L + +
Sbjct: 191 M--------RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-------TD 235
Query: 364 GSLKVLDHAIC 374
S +++ + +
Sbjct: 236 PSQRLVQNCLW 246
Score = 37.2 bits (86), Expect = 0.017
Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 30/223 (13%)
Query: 136 LHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTES 195
L ++ P +V+ + ++ + + + + L+ L+D E EG
Sbjct: 207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG--- 263
Query: 196 LLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQ 255
+ LVQ L D V GI NL + + G I+
Sbjct: 264 ---------LLGTLVQLLGSDDINVVT------CAAGILSNLTCNNYKNKMMVCQVGGIE 308
Query: 256 WSLKRLKAKIPFDGNKLYTSEILSILCQKNNEN---RKLLGDLDGIDILLQQLAYYKRHD 312
++ + + L L ++ E + + G+ ++++ L
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL------- 361
Query: 313 PNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-LMNLM 354
+ P +++ + + + N + + L+ L+
Sbjct: 362 -HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403
Score = 35.7 bits (82), Expect = 0.048
Identities = 40/248 (16%), Positives = 77/248 (31%), Gaps = 52/248 (20%)
Query: 148 LLVQLKAVSSMLELVL--HENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQV 205
++ Q+ + +++ VL + DI + L+ LT + E A+
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT------SRHQEAEMAQNAVRLHYG 353
Query: 206 CALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGII----------- 254
++V+ L ++ T+G+ NL L P + +QG I
Sbjct: 354 LPVVVKLLHPPSHWPLIKA-----TVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAH 407
Query: 255 ---QWSLKRLKAKIPFDGN------KLYTSEILSILCQKNNENRKLLGDLDGIDILLQQL 305
Q + F + L IL ++ NR ++ L+ I + +Q L
Sbjct: 408 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLL 466
Query: 306 AYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-LMNLMLRERKVSRNG 364
+ + LC +E E L L+ +
Sbjct: 467 ---------YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL-------HSR 510
Query: 365 SLKVLDHA 372
+ V +A
Sbjct: 511 NEGVATYA 518
Score = 34.9 bits (80), Expect = 0.090
Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 27/195 (13%)
Query: 136 LHAIATVPDLYPLLV-QLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTE 194
LH + + + V + M+ L+ N D LQ L + ++
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181
Query: 195 SLLTALLD----------QQVCALLVQNLERLDETVKE--ESDGV--------HNTLGIF 234
AL++ + +++ L E+ G+ + +
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241
Query: 235 EN----LCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRK 290
+N L L G +G++ +L +L + ILS L N +N+
Sbjct: 242 QNCLWTLRNLSDAATKQEGMEGLLG-TLVQL-LGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 291 LLGDLDGIDILLQQL 305
++ + GI+ L++ +
Sbjct: 300 MVCQVGGIEALVRTV 314
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 2e-04
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 102 EKRTLKNREMRIKF--PDNAEKF-MESEIE 128
EK+ LK + +K D+A +++ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 34.2 bits (77), Expect = 0.046
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 13/34 (38%)
Query: 250 KQGIIQWSLKRLKAKIPFDGNKLYTSE---ILSI 280
KQ +LK+L+A + KLY + L+I
Sbjct: 19 KQ-----ALKKLQASL-----KLYADDSAPALAI 42
Score = 28.8 bits (63), Expect = 3.6
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 14/40 (35%)
Query: 523 DENYLRRLEAGLFTLQLVDYIIVETCAAGAA---TIKQRV 559
++ L++L+A +L+L Y A +A IK +
Sbjct: 18 EKQALKKLQA---SLKL--Y------ADDSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 4.0
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 3 IGELLS----YKPKSPKRKALDDTVE 24
+ +L + Y S A+ T+E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.004
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 44 SSSKMKYQEMERLEQEKIRQEELEREKQEEEKIK-TLIEETEEKEVLNELMLKKMILLFE 102
+ + QE E + + + Q + +E K+ E +K++ E ++ E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL--EEWNQRQSEQVE 132
Query: 103 KRTLKNREMRIKFPDNAEKFMESE 126
K + NR + F +
Sbjct: 133 KNKINNRI-------ADKAFYQQP 149
Score = 32.1 bits (72), Expect = 0.33
Identities = 11/80 (13%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 18 ALDDTVEEEETSAE--DARKKRKYSSSSSSSKMKYQEMERLEQE-----KIRQEELEREK 70
D +E E+ + + ++KR ++S M+ + E+ +++ + + E++E+ K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 71 Q-----EEEKIKTLIEETEE 85
++ ++ +
Sbjct: 136 INNRIADKA----FYQQPDA 151
Score = 28.2 bits (62), Expect = 5.3
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 26 EETSAEDARKKRKYSSSSSSSK----MKYQEMERLEQEKIRQEELEREKQEEEKI 76
+E A ++++ + + E + R + +Q + I
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.9 bits (88), Expect = 0.010
Identities = 40/234 (17%), Positives = 91/234 (38%), Gaps = 16/234 (6%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEE 74
++ L + ++ E +A + R ++ K + +E+ + +I +EE ++ + E
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRV---RLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949
Query: 75 KIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNR-----EMRIKFPDNAEKFMESEIEL 129
K K + + +E L E + L EK T + + + D K + L
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 130 HTTIQELHAI-----ATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQEL-TDV 183
+ +L +L L + +++ S LE+ L + + + ++L +
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 184 DVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENL 237
L+E ++ + L Q A + L+ +++E+ +N L L
Sbjct: 1070 SDLHEQIAELQAQIAELKAQ--LAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Score = 32.1 bits (73), Expect = 0.64
Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 17/190 (8%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEE 74
+RK L++ V + T+ + +K K + +K+K + + + ++R ++ E+ +QE E
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAK-----NLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 75 KIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQ 134
KIK +E E ++ ++ + + K L +E ++ A +E E
Sbjct: 1060 KIKRKLEG-ESSDLHEQIAELQAQIAELKAQLAKKEEELQ---AALARLEDETSQKNNAL 1115
Query: 135 ELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTE 194
+ + L + + LE DL +EL + E T
Sbjct: 1116 K--------KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Query: 195 SLLTALLDQQ 204
+ L
Sbjct: 1168 ATQQELRGSD 1177
Score = 30.2 bits (68), Expect = 2.2
Identities = 35/239 (14%), Positives = 83/239 (34%), Gaps = 16/239 (6%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEE 74
+ +A D+ ++ + + A + K K E+ ++ Q E E + EE
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELK----ELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 75 KIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQ 134
L + +E E + M ++ E+ E + K + ++L ++
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK--------KMQQQMLDLEEQLE 965
Query: 135 ELHAIAT--VPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEG 192
E A + ++K + + ++ +N + L + ++D+ EE
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 193 TESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQ 251
LT L ++ ++ LE + ++ + E + I ++ Q
Sbjct: 1026 KAKNLTKLKNKH--ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 36.9 bits (86), Expect = 0.012
Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 148 LLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCA 207
++ A+ ++++L+ N I + L + G + A++D
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS---------GGNEQIQAVIDAGALP 141
Query: 208 LLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPF 267
LVQ L +E + +E L N+ + I + G + +L +L P
Sbjct: 142 ALVQLLSSPNEQILQE------ALWALSNIASGGNEQIQAVIDAGALP-ALVQL-LSSPN 193
Query: 268 DGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQ 303
+ LS + NE ++ + + ++ L Q
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 229
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 37.5 bits (86), Expect = 0.013
Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 25/179 (13%)
Query: 136 LHAIATVPDLYPLLVQLKAVSSMLELVLH-ENTDIAVAVVDLLQELTDVDVLNESEEGTE 194
L T P L A+ + L L+ + A LQ LT ++ +
Sbjct: 266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT----ASKGLMSSG 321
Query: 195 SLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGII 254
L ++ + + L+ + V + + N+ H + + +
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVR------SGASLLSNMS------RHPLLHRVMG 369
Query: 255 QWSLKRLKAKIPFDGNKLYTSE--------ILSILCQKNNENRKLLGDLDGIDILLQQL 305
+ + SE + L + K ++ ++
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 37.2 bits (85), Expect = 0.015
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 209 LVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFD 268
++ L + VK + ++LC V D+ K I L L P
Sbjct: 53 VIAMLGFRLDAVKSNA------AAYLQHLCYRNDKVKTDVRKLKGIP-VLVGL-LDHPKK 104
Query: 269 GNKLYTSEILSIL-CQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFD 327
L L + ++ +N+ + + DG+ L++ L + ++ E +
Sbjct: 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL--------RKARDMDLTEVITG 156
Query: 328 TLCSCLMLEENKERFLKGEGLQLMNLML 355
TL + + K + L + ++
Sbjct: 157 TLWNLSSHDSIKMEIVDHALHALTDEVI 184
Score = 32.2 bits (72), Expect = 0.55
Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 26/266 (9%)
Query: 113 IKFPDNAEKFMESEIELHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVLH-ENTDIAV 171
+ + + E + + + Y LL Q + V + L+ + I
Sbjct: 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327
Query: 172 AVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTL 231
A +Q L + +AL ++ + + L E V + + G L
Sbjct: 328 ASAGAIQNLC-----AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNL 382
Query: 232 GIFENLCELKPDVIHDIGKQGIIQ--WSLKRLKAKIPFDGNKLYTSEI---LSILCQKNN 286
+ EL IGK I +L + ++ ++ I ++ + +N
Sbjct: 383 AVDARNKEL-------IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435
Query: 287 ENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGE 346
E K L + GI+ L+ + + +E + T+ + + L+ E
Sbjct: 436 EAAKKLRETQGIEKLVL----INKSGNRSEKEVRAAALVLQTIWG----YKELRKPLEKE 487
Query: 347 GLQLMNLMLRERKVSRNGSLKVLDHA 372
G + + + SR+ S D +
Sbjct: 488 GWKKSDFQVNLNNASRSQSSHSYDDS 513
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 36.2 bits (83), Expect = 0.033
Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 37/246 (15%)
Query: 136 LHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTES 195
L ++ P +V+ + ++ + + + + L+ L+D E EG
Sbjct: 343 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG--- 399
Query: 196 LLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQ 255
+ LVQ L D V GI NL + + G I+
Sbjct: 400 ---------LLGTLVQLLGSDDINVVT------CAAGILSNLTCNNYKNKMMVCQVGGIE 444
Query: 256 WSLKRLKAKIPFDGNKLYTSEILSILCQKNNEN---RKLLGDLDGIDILLQQLAYYKRHD 312
++ + + L L ++ + + + G+ ++++ L
Sbjct: 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL------- 497
Query: 313 PNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-LMNLMLRERKVSRNGSLKVLDH 371
+ P +++ + + + N + + L+ L+
Sbjct: 498 -HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL-------VRAHQDTQRR 549
Query: 372 AICGPS 377
G +
Sbjct: 550 TSMGGT 555
Score = 34.6 bits (79), Expect = 0.12
Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 27/195 (13%)
Query: 136 LHAIATVPDLYPLLV-QLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTE 194
LH + + + V + M+ L+ N D LQ L + ++
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 317
Query: 195 SLLTALLD----------QQVCALLVQNLERLDETVKE--ESDGV--------HNTLGIF 234
AL++ + +++ L E+ G+ + +
Sbjct: 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 235 EN----LCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRK 290
+N L L G +G++ +L +L + ILS L N +N+
Sbjct: 378 QNCLWTLRNLSDAATKQEGMEGLLG-TLVQL-LGSDDINVVTCAAGILSNLTCNNYKNKM 435
Query: 291 LLGDLDGIDILLQQL 305
++ + GI+ L++ +
Sbjct: 436 MVCQVGGIEALVRTV 450
Score = 34.2 bits (78), Expect = 0.13
Identities = 38/230 (16%), Positives = 72/230 (31%), Gaps = 45/230 (19%)
Query: 148 LLVQLKAVSSMLELVL--HENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQV 205
++ Q+ + +++ VL + DI + L+ LT + E A+
Sbjct: 436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT------SRHQDAEMAQNAVRLHYG 489
Query: 206 CALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGII----------- 254
++V+ L ++ T+G+ NL L P + +QG I
Sbjct: 490 LPVVVKLLHPPSHWPLIKA-----TVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAH 543
Query: 255 ---QWSLKRLKAKIPFDGN------KLYTSEILSILCQKNNENRKLLGDLDGIDILLQQL 305
Q + F + L IL ++ NR ++ L+ I + +Q L
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLL 602
Query: 306 AYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-LMNLM 354
+ + LC +E E L L+
Sbjct: 603 ----YSP-----IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 35.9 bits (83), Expect = 0.048
Identities = 15/117 (12%), Positives = 41/117 (35%)
Query: 21 DTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEEKIKTLI 80
D +E S + + + S+ + K++ E+ + R +E+I L
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
Query: 81 EETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELH 137
+E + + + + + + E++ + + E +H +E+
Sbjct: 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054
Score = 32.4 bits (74), Expect = 0.55
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 11/127 (8%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSS--KMKYQEMERLEQEKIRQEELEREKQE 72
+ + A+ KK K + S K+ ++ Q + + +E +E +
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 73 EEKIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEI-ELHT 131
+ +E T E L+ + L+ E K N ++ EI +L
Sbjct: 947 LLEKMNNLEITYSTE---TEKLRSDV-----ERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 132 TIQELHA 138
+ +
Sbjct: 999 ELHQTQT 1005
Score = 29.3 bits (66), Expect = 4.2
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMER-LEQEKIRQEELEREKQEE 73
++K +++ ++ + E + ++ K + +E+ R + + E +K E
Sbjct: 1006 EKKTIEEWADKYKHETEQ--LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063
Query: 74 EKIKTLIEETEEKE 87
E K L + ++
Sbjct: 1064 ET-KQLELDLNDER 1076
Score = 29.3 bits (66), Expect = 5.3
Identities = 29/202 (14%), Positives = 66/202 (32%), Gaps = 30/202 (14%)
Query: 34 RKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELERE--------KQEEEKIKTLIEETEE 85
+ + S K + R+ + + + + K+E +K+K E
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Query: 86 KEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELHAIATVPDL 145
+ L+ + K++ L K +N+E + +E L T
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEY--------KSLLEKMNNLEITYSTETE------- 963
Query: 146 YPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLD--Q 203
+L++ L + E + V+ L +E+ + + + + D +
Sbjct: 964 -----KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 204 QVCALLVQNLERLDETVKEESD 225
LV L+ + +K E +
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKE 1040
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 35.8 bits (83), Expect = 0.051
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 24 EEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEEKIKTLIEET 83
E T+ + S ++ + K + +E + E + LE + +
Sbjct: 899 ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC---QSLEGQSNSDLL----SILA 951
Query: 84 EEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTIQELHA 138
+ E+ + + + ++ + +E+E I++LH
Sbjct: 952 QLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNT-LLAELERLQKIEDLHH 1005
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 33.8 bits (77), Expect = 0.13
Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 12/154 (7%)
Query: 206 CALLVQNLERLDETVKEESDGVHNTLGIFENLCEL--KPDVIHDIGKQGIIQWSLKRLKA 263
C ++ E++ G E L +L D D + + + R
Sbjct: 33 CLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY-L 91
Query: 264 KIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMME 323
+ G + ++++ Q ++ + L + LL+ L D +
Sbjct: 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL----DRDACD----TVRV 143
Query: 324 NLFDTLCSCLM-LEENKERFLKGEGLQLMNLMLR 356
+ + E +FL+ +G ++ ++
Sbjct: 144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 177
Score = 28.8 bits (64), Expect = 5.3
Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 15/111 (13%)
Query: 143 PDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLD 202
++L S ++ + + + V LLQ L L
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH---------PEHKGTLCS 207
Query: 203 QQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGI 253
+ LV + E + LG +L P + + + +
Sbjct: 208 MGMVQQLVALVRTEHSPFHE------HVLGALCSLVTDFPQGVRECREPEL 252
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 33.8 bits (77), Expect = 0.19
Identities = 18/224 (8%), Positives = 60/224 (26%), Gaps = 28/224 (12%)
Query: 134 QELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGT 193
E + D + + M + + ++ ++ +++
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL--------SREH 119
Query: 194 ESLLTALLDQQVCALLVQNLERLD-ETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQG 252
+ ++ V LV+ + E ++ E+ N+ +
Sbjct: 120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA------AWALTNIASGTSAQTKVVVDAD 173
Query: 253 IIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHD 312
+ ++ L K L + + + R + + ++ +L
Sbjct: 174 AVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF------- 224
Query: 313 PNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGL--QLMNLM 354
+ ++ TL + ++ + + L L+
Sbjct: 225 --NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 33.5 bits (76), Expect = 0.22
Identities = 10/76 (13%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 16 RKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEK-----IRQEELEREK 70
++ + ++ E E + + ++ + + + E+ RLE + IR +EL +
Sbjct: 881 QQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIE 940
Query: 71 QEEEKIKTLIEETEEK 86
+++ +++ +
Sbjct: 941 SNRQQVMESLDQAGWR 956
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 32.6 bits (75), Expect = 0.34
Identities = 6/75 (8%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 18 ALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEEKIK 77
+ + + ++++ + + + + Q+ +++Q+ Q R ++ +++
Sbjct: 74 STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLT 133
Query: 78 TLIEETEEKEVLNEL 92
L +E ++ +
Sbjct: 134 LL--YPKEAQLEEQF 146
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 32.9 bits (74), Expect = 0.41
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 24 EEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELER--EKQEEEKIKTLIE 81
+ + + + + +++S E +RLEQE + E ++ ++ E EK + +
Sbjct: 648 QRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELL 707
Query: 82 ETEEKEVLNE 91
E E + E
Sbjct: 708 ELEAMSMAVE 717
Score = 29.0 bits (64), Expect = 5.7
Identities = 16/106 (15%), Positives = 31/106 (29%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEE 74
R L+ +++ AE ARK+ + S + + + + +E E +
Sbjct: 684 ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQ 743
Query: 75 KIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAE 120
E E E + K + + K A
Sbjct: 744 AKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLAN 789
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical
bundle, tetracyclin repressor-like structural genomics;
2.60A {Syntrophus aciditrophicus}
Length = 216
Score = 31.6 bits (72), Expect = 0.52
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 426 MLRNCSGPQRQRLLSKFTENDH---EKVDRLLELHFKYLSKH--VVSIIANMLRNCSGPQ 480
++ G + T + V L+ + S+ + N G
Sbjct: 61 IIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCETMLWLPSLWIREIVNEGGAL 120
Query: 481 RQRLLSKFTENDHEKVDRLLE 501
R+++L+ + K +
Sbjct: 121 REKMLNNIPIDKMNKFSAKIA 141
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.0 bits (73), Expect = 0.53
Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 10/110 (9%)
Query: 16 RKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQEEEK 75
+ ++ + EE S KK K+ E ++ + EL+ K +
Sbjct: 160 QSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLE 219
Query: 76 IK---TLIEETEE-KEVLNELMLKKMILLFEKRTLK------NREMRIKF 115
+ +E + + + L E++ + ++ + F
Sbjct: 220 VLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELF 269
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.4 bits (70), Expect = 0.54
Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 8/125 (6%)
Query: 2 DIGELLSYKPKSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKI 61
G + + E+ + + + + + + E E I
Sbjct: 43 GFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESI 102
Query: 62 RQ------EELEREKQEEEKIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKF 115
R+ + L+ + ++ E +K++ E ++ EK + NR F
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDL--EEWNQRQSEQVEKNKINNRIADKAF 160
Query: 116 PDNAE 120
+
Sbjct: 161 YQQPD 165
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 31.5 bits (71), Expect = 0.70
Identities = 31/222 (13%), Positives = 61/222 (27%), Gaps = 44/222 (19%)
Query: 278 LSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLML-- 335
+ C + +E RK + L GI LLQ L + Q +C L
Sbjct: 34 IQHECFQKSEARKRVNQLRGILKLLQLLKV------QNEDVQR-------AVCGALRNLV 80
Query: 336 ---EENKERFLKGEGLQLMNLMLRERKVSRNGSLKVLDHAIC---GPSGKDNANKFVDIL 389
+NK + G+ + +L+ + L+ S D +
Sbjct: 81 FEDNDNKLEVAELNGVPRLLQVLK-----QTRDLETKKQITGLLWNLSSNDKLKNLMITE 135
Query: 390 GLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCSGPQRQRLLSKFTENDHEK 449
L T+ + + ++ N +G L + +
Sbjct: 136 ALLTLTENIIIPFSGWPEGDYPKANG-----LLDFDIFYNVTG-----CLRNMSSAGADG 185
Query: 450 VDRLLELHFKYLSKHVVSIIANMLRNCSGPQRQRLLSKFTEN 491
+ ++ + + +R + K TEN
Sbjct: 186 RKAMRRCD------GLIDSLVHYVRGTI--ADYQPDDKATEN 219
Score = 29.9 bits (67), Expect = 1.9
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 17/166 (10%)
Query: 148 LLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCA 207
+ QL+ + +L+L+ +N D+ AV L+ L D N+ + +
Sbjct: 47 RVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK---------LEVAELNGVP 97
Query: 208 LLVQNLER-LDETVKEESDGVHNTLGIFENLCELK-----PDVIHDIGKQGIIQWSLKRL 261
L+Q L++ D K++ G+ L + L L + +I
Sbjct: 98 RLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYP 157
Query: 262 KAKIPFDGNKLY-TSEILSILCQKNNENRKLLGDLDG-IDILLQQL 305
KA D + Y + L + + RK + DG ID L+ +
Sbjct: 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYV 203
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 31.1 bits (71), Expect = 0.79
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 17/152 (11%)
Query: 154 AVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNL 213
+ M++ + + + + L ++ G + A++D LVQ L
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIAS---------GGNEQIQAVIDAGALPALVQLL 63
Query: 214 ERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLY 273
+E + +E+ L N+ + I + G + +L +L P +
Sbjct: 64 SSPNEQILQEA------LWALSNIASGGNEQIQAVIDAGALP-ALVQL-LSSPNEQILQE 115
Query: 274 TSEILSILCQKNNENRKLLGDLDGIDILLQQL 305
LS + NE + + D + L+Q L
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 31.4 bits (71), Expect = 0.81
Identities = 29/207 (14%), Positives = 64/207 (30%), Gaps = 33/207 (15%)
Query: 122 FMESEIELHTTIQELHAIATVPDLYPLL------VQLKAVSSMLELVLHE-NTDIAVAV- 173
F E++I ++ D+ ++ QL A +L+ E N I +
Sbjct: 5 FHEAQIN---NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 174 --------VDLLQELTDVDVLNESE-------EGTESLLTALLDQQVCALLVQNLERLDE 218
V+ L+ + + ES G ++ + ++ L E
Sbjct: 62 TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 219 TVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEIL 278
V+E++ + N+ + I+ L+ + + L
Sbjct: 122 DVQEQA------VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA-L 174
Query: 279 SILCQKNNENRKLLGDLDGIDILLQQL 305
S LC+ + + +++L L
Sbjct: 175 SNLCRGKSPPPEFAKVSPCLNVLSWLL 201
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 31.4 bits (72), Expect = 0.91
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Query: 48 MKYQEMERLEQEKIRQE--ELEREKQE-------EEKIKTLIEE 82
+K + + +LE+ KIR E ELE+E+ + E K+ L+++
Sbjct: 394 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 437
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 31.2 bits (71), Expect = 1.2
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 48 MKYQEMERLEQEKIRQE--ELEREKQE-------EEKIKTLIEE 82
+K + + +LE+ +IR E EL + E +K LI
Sbjct: 688 LKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIIS 731
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 30.6 bits (69), Expect = 1.5
Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 23/160 (14%)
Query: 154 AVSSMLELVLHENTDIAVAVVDLLQELT-DVDVLNESEEGTESLLTALLDQQVCALLVQN 212
+ +++ + E+ D+ + +L+ L+ DV ++ L + L++
Sbjct: 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSK---------KTLREVGSVKALMEC 178
Query: 213 LERL-DETVKEESDGVHNTLGIFENLCELKPDVIHDIGK-QGIIQWSLKRLKAKIPFDGN 270
+ E+ + + L NL + DI G + + + L + +
Sbjct: 179 ALEVKKESTLK------SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232
Query: 271 KLYTS-----EILSILCQKNNENRKLLGDLDGIDILLQQL 305
+ S +S L N ++R++L + + + LLQ L
Sbjct: 233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 272
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.6 bits (66), Expect = 2.7
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 50 YQEMERLEQEKIRQEELEREKQEEEKIKTLIEETEEKEVLNE 91
Y ++R + + + ER K+ ++ + +E L E
Sbjct: 219 YSLIQRSKCGPVGSD--ERVKEFKQSLIKYMETQRSYTALAE 258
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex,
isoprene biosynthesis, transferase; HET: 721; 1.94A
{Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A*
3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Length = 390
Score = 29.5 bits (66), Expect = 3.5
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 468 IIANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVDEADKEQRDEDEDENYL 527
+ L S Q + + D EKV + L +EAD + +
Sbjct: 305 LAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRL-------YEEADLQGDYVAYEAAVA 357
Query: 528 RRLEAGL 534
+++ +
Sbjct: 358 EQVKELI 364
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 29.4 bits (66), Expect = 3.8
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 51 QEMERLEQEKIRQEELEREKQEEEKIKTLIEETEEKEVLNELM 93
+E+ L + Q E + ++ + + T + + LM
Sbjct: 350 RELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILM 392
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural
genomics consortium, SGC, transferase; 2.00A {Plasmodium
vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A*
3ph7_A* 3rbm_A*
Length = 395
Score = 29.1 bits (65), Expect = 4.0
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 422 IKANMLRNCSGPQRQRLLSKFTENDHEKVDRLLEL--------HFKYLSKHVVSIIANML 473
IK CS P + +++ + +N+ V + L H++ K + I + +
Sbjct: 315 IKT--FELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAI 372
Query: 474 RNCSGPQRQRLLSKFTENDHEKV 496
+ +L E V
Sbjct: 373 NELHHEGIEYVLKYLLEILFTGV 395
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase,
structural genomics, structural GEN consortium, SGC,
transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F*
1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A*
1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F*
2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Length = 374
Score = 29.0 bits (65), Expect = 4.4
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 427 LRNCSGPQRQRLLSKFTENDHEKVDRLLEL--------HFKYLSKHVVSIIANMLRNCSG 478
L+ + Q Q L + + + EKV R+ L F + S I ++ +
Sbjct: 296 LQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAA 355
Query: 479 PQRQRLLSKFTE 490
P +
Sbjct: 356 PLPPAVFLGLAR 367
Score = 28.2 bits (63), Expect = 7.2
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 468 IIANMLRNCSGPQRQRLLSKFTENDHEKVDRLLEL 502
++ L+ + Q Q L + + + EKV R+ L
Sbjct: 291 LVVQCLQRATPEQYQILKENYGQKEAEKVARVKAL 325
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 29.2 bits (64), Expect = 4.6
Identities = 32/283 (11%), Positives = 86/283 (30%), Gaps = 18/283 (6%)
Query: 76 IKTLIEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFMESEIELHTTI-- 133
+ + E+++ L L + + + F++ ++ +
Sbjct: 274 AVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGL--VEKHYVFLKRLCQVLCALGN 331
Query: 134 QELHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGT 193
Q + D+ K + S L H + + + L
Sbjct: 332 QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGAL-----FRHEILSR 386
Query: 194 ESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGI 253
+ LL A++ + + NL ++ K +S + F++ + +QG
Sbjct: 387 DPLLLAIIP-KYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGE 445
Query: 254 IQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDP 313
+ RL K + ++ + G ++ +
Sbjct: 446 VMRLACRLDPKT--------SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFS 497
Query: 314 NTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQLMNLMLR 356
+ + E M +++ + + N+E +G++L+ ++L
Sbjct: 498 PSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN 540
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 27.7 bits (61), Expect = 4.8
Identities = 11/76 (14%), Positives = 23/76 (30%)
Query: 7 LSYKPKSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEEL 66
+ S + + ++ ++ K S +M E + + E+
Sbjct: 31 MIITKSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEV 90
Query: 67 EREKQEEEKIKTLIEE 82
+ EE K IE
Sbjct: 91 GVKAALEEAKKVQIEL 106
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase,
bisphosphonate, dimethyl ALLY pyrophosphate sulfate,
FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma
cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A*
3icn_A* 3icz_A* 3id0_A*
Length = 362
Score = 29.0 bits (65), Expect = 5.3
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 468 IIANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVDEADKEQRDEDEDENYL 527
+ L + Q + + + D KV + L EA+ + + +
Sbjct: 277 LAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRL-------YSEANLQADFAAYEAEVV 329
Query: 528 RRLEAGL 534
R +E+ +
Sbjct: 330 REVESLI 336
>3tuf_A Stage III sporulation protein AH; intercellular signalling,
intercellular channel, sporulation engulfment and
signalling, intercellular space; 2.26A {Bacillus
subtilis} PDB: 3uz0_A
Length = 197
Score = 28.3 bits (62), Expect = 5.4
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 13/98 (13%)
Query: 11 PKSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELER-- 68
+ K T + A K + + ++ RL+ E R +E E
Sbjct: 45 TEKGKEDGTKGTKDSSADKETSAEASEKGTVVTETADDDLFTTYRLDLEDARSKEREELN 104
Query: 69 -----------EKQEEEKIKTLIEETEEKEVLNELMLK 95
EK E T + E E E E ++K
Sbjct: 105 AIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIK 142
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 28.8 bits (64), Expect = 5.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 278 LSILCQKNNENRKLLGDLDGIDILLQQL 305
+S L N ++R++L + + + LLQ L
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHL 388
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene
biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A
{Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A*
1ubx_A* 1fps_A
Length = 367
Score = 28.6 bits (64), Expect = 6.2
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 422 IKANMLRNCSGPQRQRLLSKFTENDHEKVDRLLEL--------HFKYLSKHVVSIIANML 473
++ L+ + QRQ L + + EKV ++ EL F+ + + ++
Sbjct: 286 VQC--LQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELI 343
Query: 474 RNCSGPQRQRLLSKFTE 490
S + + +
Sbjct: 344 EKHSNRLPKEIFLGLAQ 360
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 28.7 bits (64), Expect = 6.8
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 3 IGELLSYKPKSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIR 62
+ +LL + + + V+E E E R + + + S K + +EM LE+EK
Sbjct: 152 VAKLLGIDEFEKCYQKMGEIVKEYEKRLE--RIEGELNYKEESLKARLKEMSNLEKEK-- 207
Query: 63 QEELEREKQEEEKIKTLI----EETEEKEVLNELMLKKMILLFEKRTLKNREMRIK 114
E+L + + +K++ + + +E L+ K + F + L + +
Sbjct: 208 -EKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELT 262
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.8 bits (63), Expect = 6.8
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKY-QEMERLEQEKIRQEELEREKQEE 73
+ +E E AE A+ K + ++ ER QE ++Q + E
Sbjct: 481 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 540
Query: 74 EKIKTLIEETEEKEVLNELMLKK 96
+ +K K E +LK+
Sbjct: 541 QLLKEQERTLALKLQEQEQLLKE 563
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 27.3 bits (60), Expect = 7.7
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 10 KPKSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELERE 69
S R+ D ++EE + E A ++RKY E E ++ +RE
Sbjct: 33 FNASLPRRR-DPSLEEIQKKLEAAEERRKY----------------QEAELLKHLAEKRE 75
Query: 70 KQEEEKIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNREMRIKFPDNAEKFME 124
+ E K + E ++ E + +KM E R M + + + E
Sbjct: 76 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 130
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 28.2 bits (63), Expect = 8.4
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 549 AAGAATIKQRVLQI---------INLRGGSLKTIRHVMREYAGNLGDV 587
+A + + +RVLQI L G + T+ V+++ + ++
Sbjct: 62 SAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEEL 109
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 28.3 bits (62), Expect = 9.4
Identities = 36/290 (12%), Positives = 86/290 (29%), Gaps = 43/290 (14%)
Query: 129 LHTTIQELHAIATVPDLYPLLVQ-LKAVSSMLELVLHENTDIAVAVVDLLQELT------ 181
L + + L++ ++ ++++L N VV L
Sbjct: 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455
Query: 182 -----------------DVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEES 224
+ + + +T L ++ + L + +E
Sbjct: 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQE-- 513
Query: 225 DGVHNTLGIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQK 284
+ +C L ++ + ++G ++ L+ + K + ++ L+ +
Sbjct: 514 ----LIARVLNAVCGL-KELRGKVVQEGGVKALLRMALE--GTEKGKRHATQALARIGIT 566
Query: 285 NNENRKL--LGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERF 342
N LD I LL L + D E E + L L S M E ++R
Sbjct: 567 INPEVSFSGQRSLDVIRPLLNLL----QQDCTALENFESLMALT-NLAS--MNESVRQRI 619
Query: 343 LK-GEGLQLMNLMLRERKVSRNGSLKVLDHAICGPSGKDNANKFVDILGL 391
+K ++ ++ + + + L + + D +
Sbjct: 620 IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 28.0 bits (62), Expect = 9.5
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 107 KNREMRIKFPDNAEKFMESEIELHTTIQELHAIATVPDLYPLLVQLKAVSSMLELVL--- 163
+ ++RI D + + +E + +TT+Q++ + + S L L L
Sbjct: 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKPY 63
Query: 164 HENTDIAVAVVDLLQELTDVDVLNES 189
H+ ++L ELT++D E+
Sbjct: 64 HKPLQHVRDWPEILAELTNLDPQRET 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.368
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,074,534
Number of extensions: 571989
Number of successful extensions: 2110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1896
Number of HSP's successfully gapped: 217
Length of query: 607
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 508
Effective length of database: 3,937,614
Effective search space: 2000307912
Effective search space used: 2000307912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.6 bits)