RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11496
(607 letters)
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 31.8 bits (70), Expect = 0.23
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 11/139 (7%)
Query: 232 GIFENLCELKPDVIHDIGKQGIIQWSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKL 291
G L +L D ++ + + ++ + + + L IL ++ NR +
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIV 455
Query: 292 LGDLDGIDILLQQLAYYKRHDPNTPEEQEMMENLFDTLCSCLMLEENKERFLKGEGLQ-L 350
+ L+ I + +Q L + + LC +E E L
Sbjct: 456 IRGLNTIPLFVQLL---------YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506
Query: 351 MNLMLRERKVSRNGSLKVL 369
L+ + + VL
Sbjct: 507 TELLHSRNEGVATYAAAVL 525
>d1spga_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Fish (Leiostomus
xanthurus) [TaxId: 59837]}
Length = 143
Score = 29.3 bits (65), Expect = 0.73
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Query: 385 FVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCSGPQRQRLLSKFTE 444
V + F + + ++ H I A + +
Sbjct: 33 LVSFPQTKIYFSEWGQDLGPQTPQV------RNHGAVIMAAVGKAVKSIDNLVGGLSQLS 86
Query: 445 NDHEKVDRLLELHFKYLSKHVVSIIANMLRNCSGPQRQRLLSKF 488
H R+ +FK L+ +++ +I+ P+ + KF
Sbjct: 87 ELHAFKLRVDPANFKILAHNIILVISMYFPGDFTPEVHLSVDKF 130
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 29.0 bits (65), Expect = 0.74
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 442 FTENDHEKVDRLLELHFKYLSKHVVSIIANMLRNC 476
F+ D+ KVDR ++++K +V + R
Sbjct: 31 FSGKDYTKVDRSAAYAARWVAKSLVK--GGLCRRV 63
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 30.2 bits (66), Expect = 0.84
Identities = 19/196 (9%), Positives = 51/196 (26%), Gaps = 12/196 (6%)
Query: 136 LHAIATVPDLYPLLVQLKAVSSMLELVLHENTDIAVAVVDLLQELTDVDVLNESEEGTES 195
L T P L A+ + L L+ D A ++ ++ +
Sbjct: 266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD---ATLEACAGALQNLTASKGLMSSGM 322
Query: 196 LLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGIFENLCELKPDVIHDIGKQGIIQ 255
L ++ + + L+ + V + + + L + + + + +
Sbjct: 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV----MGNQVFPEVTR 378
Query: 256 WSLKRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNT 315
+ + L + K ++ ++ +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC-----RSSAS 433
Query: 316 PEEQEMMENLFDTLCS 331
P+ E L + S
Sbjct: 434 PKAAEAARLLLSDMWS 449
Score = 29.0 bits (63), Expect = 1.8
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 271 KLYTSEILSILCQKNNENRKLLGDLDGIDILLQQL 305
+ + + C ++ ++ + L GI L+ L
Sbjct: 19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL 53
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 29.6 bits (66), Expect = 0.95
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 15 KRKALDDTVEEEETSAEDARKKRKYSSSSSSSKM------KYQEMERLEQEKIRQ--EEL 66
++ D+ +E ++ + + K S + + Q ++ L E+I + E+
Sbjct: 172 EKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 231
Query: 67 EREKQEEEKIK 77
E+EK+E EK K
Sbjct: 232 EKEKEENEKKK 242
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.7 bits (64), Expect = 1.1
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 51 QEMERLEQEKIRQEELEREKQEEEKIKTLIEETEEKEVLNELMLKKMILLFEKRTLKNRE 110
+ + E E ++ +RE + E K + E ++ E + +KM E R
Sbjct: 56 ERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAA 115
Query: 111 MRIKFPDNAEKFMESE 126
M + + + E
Sbjct: 116 MLERLQEKDKHAEEVR 131
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 29.2 bits (65), Expect = 1.5
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 8 SYKPKSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSK----MKYQEMERLEQEKIRQ 63
+ +A DD E E + Y + ++ ++ Q++ LE EK+
Sbjct: 388 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 447
Query: 64 EELEREKQEEEKIKTLIEETEEKEVLNELMLKKMILLFEK 103
E K+ ++I L+ + L E++ +++ L+ E+
Sbjct: 448 E----YKELLDQIAELLRILGSADRLMEVIREELELVREQ 483
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 28.9 bits (63), Expect = 1.6
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 57 EQEKIRQEELEREKQEEEKIKTLIEETEEKEVLNELMLKKMILLFEKRTLK 107
E +++RQE E+ K + + + ++ N + I + +RTL+
Sbjct: 3 ELDQLRQE-AEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLR 52
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 28.5 bits (63), Expect = 2.3
Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 47 KMKYQEMER-LEQEKI---RQEELEREKQEEEKIKTLIEETEEKEVLNELMLK----KMI 98
K K +E+E+ L + + + + E + E+I+ + +E + EL+ + ++
Sbjct: 2 KEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELE 61
Query: 99 LLFEKRTLKNREMRIKFPDNAEKFMESEIELHT 131
+ ++ L + F + E ++ +E+
Sbjct: 62 IEKYEKELDQLYQELLFLLSPEASDKAIVEIRP 94
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional
dehydrogenase/ferrochelatase Met8p, dimerisation and
C-terminal domains {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 123
Score = 27.1 bits (60), Expect = 3.3
Identities = 6/66 (9%), Positives = 19/66 (28%)
Query: 259 KRLKAKIPFDGNKLYTSEILSILCQKNNENRKLLGDLDGIDILLQQLAYYKRHDPNTPEE 318
+ ++ P D + Y + D+ + L + + + P
Sbjct: 55 RGIRLLAPDDKDVKYRMDWARRCTDLFGIQHCHNIDVKRLLDLFKVMFQEQNCSLQFPPR 114
Query: 319 QEMMEN 324
+ ++
Sbjct: 115 ERLLSE 120
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 28.3 bits (62), Expect = 3.4
Identities = 12/94 (12%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 12 KSPKRKALDDTVEEEETSAEDARKKRKYSSSSSSSKMKYQEMERLEQEKIRQEELEREKQ 71
K D+ E+T + Y + M+ + + +K+ ++ +++
Sbjct: 665 KGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQ----KQE 720
Query: 72 EEEKIKTLIEETEEKEVLNEL-MLKKMILLFEKR 104
+E +++ L++ + + +L + F +R
Sbjct: 721 KETELENLLKLSAKDIWNTDLKAFEVGYQEFLQR 754
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 55
Score = 25.3 bits (56), Expect = 4.1
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 73 EEKIKTLIEETEEKEVLNELMLKKM 97
E + + + + K+VL++L LK+
Sbjct: 18 NEYQRRVADGEDPKDVLDDLGLKRY 42
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 27.3 bits (59), Expect = 6.6
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 468 IIANMLRNCSGPQRQRLLSKFTENDHEKVDRLLELHFKYLSKVDEADKEQRDEDEDENYL 527
++ L+ + QRQ L + + EKV ++ EL+ + E+ + +
Sbjct: 265 LVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELI 324
Query: 528 RRLEAGLFT---LQLVDYII 544
+ L L L I
Sbjct: 325 EKHSNRLPKEIFLGLAQKIY 344
>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish
(Trematomus newnesi) [TaxId: 35730]}
Length = 146
Score = 26.2 bits (57), Expect = 8.2
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 2/104 (1%)
Query: 385 FVDILGLRTIFPLFMKTPKKNRRKIITVEEHEEHVVSIKANMLRNCSGPQRQRLLSKFTE 444
V + F F N I +H +I + R
Sbjct: 32 LVVYPWTQRYFGKFGN--LYNAAAIAQNAMVSKHGTTILNGLDRAVKNMDDITNTYAELS 89
Query: 445 NDHEKVDRLLELHFKYLSKHVVSIIANMLRNCSGPQRQRLLSKF 488
H + + +FK L+ + ++A + + Q KF
Sbjct: 90 VLHSEKLHVDPDNFKLLADCLTIVVAARFGSAFTGEVQAAFQKF 133
>d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus
griseus) [TaxId: 89020]}
Length = 136
Score = 25.8 bits (56), Expect = 9.7
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 1/104 (0%)
Query: 386 VDILGLRTIFPLFMKTPKKNRR-KIITVEEHEEHVVSIKANMLRNCSGPQRQRLLSKFTE 444
+ + + + +F P NR + T H + + + L K
Sbjct: 20 MKTVVTQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDDVKTLFKDLS 79
Query: 445 NDHEKVDRLLELHFKYLSKHVVSIIANMLRNCSGPQRQRLLSKF 488
H + F L+ ++ +A + ++C P Q + KF
Sbjct: 80 KKHADDLHVDPGSFHLLTDCIIVELAYLRKDCFTPHIQGIWDKF 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.368
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,170,533
Number of extensions: 106422
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 68
Length of query: 607
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 516
Effective length of database: 1,158,166
Effective search space: 597613656
Effective search space used: 597613656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)