Query psy11497
Match_columns 69
No_of_seqs 102 out of 123
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:54:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2734|consensus 99.8 2.3E-21 5E-26 151.2 4.3 66 3-68 146-211 (536)
2 smart00185 ARM Armadillo/beta- 69.7 10 0.00022 18.5 3.2 35 27-67 6-40 (41)
3 PF01417 ENTH: ENTH domain; I 64.4 12 0.00027 23.6 3.5 63 5-67 7-70 (125)
4 PF08569 Mo25: Mo25-like; Int 61.4 12 0.00026 28.3 3.5 42 19-60 62-103 (335)
5 cd00197 VHS_ENTH_ANTH VHS, ENT 60.2 38 0.00082 20.8 5.3 60 5-67 4-65 (115)
6 cd03571 ENTH_epsin ENTH domain 54.5 30 0.00065 22.6 4.1 61 6-67 6-67 (123)
7 PF00514 Arm: Armadillo/beta-c 38.3 54 0.0012 16.5 2.8 18 26-43 5-22 (41)
8 COG2411 Uncharacterized conser 36.2 19 0.0004 25.9 1.0 26 6-31 63-88 (188)
9 KOG0041|consensus 27.1 54 0.0012 24.4 2.1 48 4-57 176-223 (244)
10 COG3077 RelB DNA-damage-induci 24.2 29 0.00064 22.0 0.3 20 43-62 9-28 (88)
11 smart00273 ENTH Epsin N-termin 22.4 2.1E+02 0.0045 17.9 4.8 47 19-67 20-68 (127)
12 PRK11235 bifunctional antitoxi 21.3 30 0.00065 21.4 -0.1 20 43-62 6-25 (80)
No 1
>KOG2734|consensus
Probab=99.83 E-value=2.3e-21 Score=151.20 Aligned_cols=66 Identities=64% Similarity=0.787 Sum_probs=64.5
Q ss_pred chhhhhccccccccccHHhHHHHHHHHHhcchHHHHHHhhhhhcCCchHHHHHHHHHHHHhhcccC
Q psy11497 3 CFSFQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTLGKLVTPLG 68 (69)
Q Consensus 3 ~~lL~ELTD~Dv~~e~~e~~~~Lv~aL~e~~llelLv~nL~RLdE~~e~e~~gV~~~L~iiENLl~ 68 (69)
+++||||||+|+..+++||+..||+||++++++++||||+.||||++++|+.|||+||+++|||++
T Consensus 146 vdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~ 211 (536)
T KOG2734|consen 146 VDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVE 211 (536)
T ss_pred HHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999999999999999999999999999986
No 2
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=69.75 E-value=10 Score=18.48 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHhcchHHHHHHhhhhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 27 TALLDQQVCALLVQNLERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 27 ~aL~e~~llelLv~nL~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
..+++.+.++.|++-|. ..+..-+.++++.+-||.
T Consensus 6 ~~i~~~g~i~~L~~ll~------~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 6 QAVVDAGGLPALVELLK------SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHCCCHHHHHHHHc------CCCHHHHHHHHHHHHHHc
Confidence 45678899999999876 224566777888887775
No 3
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=64.41 E-value=12 Score=23.61 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=40.8
Q ss_pred hhhhccccccccccHHhHHHHHHHHHhcchHHHHHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 5 SFQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 5 lL~ELTD~Dv~~e~~e~~~~Lv~aL~e~~llelLv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
.+.|-|..|.-.-.......+..+-.+..-+...++-| .||-......-.-+|.+|.++|.|+
T Consensus 7 ~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl 70 (125)
T PF01417_consen 7 KVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLL 70 (125)
T ss_dssp HHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence 34566666654333344666666666654555555555 7774456677889999999999886
No 4
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=61.43 E-value=12 Score=28.28 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHHhcchHHHHHHhhhhhcCCchHHHHHHHHHH
Q psy11497 19 EEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTL 60 (69)
Q Consensus 19 ~e~~~~Lv~aL~e~~llelLv~nL~RLdE~~e~e~~gV~~~L 60 (69)
++....|+..+...+++.+|+.+|..|+=+..-|..-||+.+
T Consensus 62 ~e~v~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~l 103 (335)
T PF08569_consen 62 PEQVAQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNL 103 (335)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHH
Confidence 456789999999999999999999999865444555555543
No 5
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=60.16 E-value=38 Score=20.82 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=39.8
Q ss_pred hhhhccccccccccHHhHHHHHHHHHhc-chHHHHHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 5 SFQELTDVDVLNESEEGTESLLTALLDQ-QVCALLVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 5 lL~ELTD~Dv~~e~~e~~~~Lv~aL~e~-~llelLv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
.+.+.|+++....+......+.+..-+. ....-.++-| .||+.. .-.=++.+|.++|.++
T Consensus 4 ~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~---~~~~~lkaL~lLe~lv 65 (115)
T cd00197 4 TVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK---NPHVVLKALTLLEYCV 65 (115)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHH
Confidence 5678888876665544455666666554 3445555555 788764 5677888888888765
No 6
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=54.52 E-value=30 Score=22.60 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=38.7
Q ss_pred hhhccccccccccHHhHHHHHHHHHhcchHHHHHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 6 FQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 6 L~ELTD~Dv~~e~~e~~~~Lv~aL~e~~llelLv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
+.|=|..|.-.-.......+..+=.+..-+...++-| .||+.. ...-.-||+||.++|.|+
T Consensus 6 vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~-~k~WR~vyKaL~lleyLl 67 (123)
T cd03571 6 VREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDK-GKNWRHVYKALTLLEYLL 67 (123)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHH
Confidence 3455555543222344566666655544555556665 888885 456777999999999886
No 7
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=38.26 E-value=54 Score=16.50 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.7
Q ss_pred HHHHHhcchHHHHHHhhh
Q psy11497 26 LTALLDQQVCALLVQNLE 43 (69)
Q Consensus 26 v~aL~e~~llelLv~nL~ 43 (69)
..++++.++++.|++-|.
T Consensus 5 ~~~i~~~g~i~~Lv~ll~ 22 (41)
T PF00514_consen 5 KQAIVEAGGIPPLVQLLK 22 (41)
T ss_dssp HHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHc
Confidence 467779999999999998
No 8
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=36.22 E-value=19 Score=25.92 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=18.7
Q ss_pred hhhccccccccccHHhHHHHHHHHHh
Q psy11497 6 FQELTDVDVLNESEEGTESLLTALLD 31 (69)
Q Consensus 6 L~ELTD~Dv~~e~~e~~~~Lv~aL~e 31 (69)
.+||||+|.--+.=.....|+.+|-.
T Consensus 63 V~ELTdEDAr~DGF~sreELi~~Lkr 88 (188)
T COG2411 63 VSELTDEDARLDGFRSREELIEELKR 88 (188)
T ss_pred HhhhhHHHHHhcccccHHHHHHHHHH
Confidence 57999999887644456677777654
No 9
>KOG0041|consensus
Probab=27.11 E-value=54 Score=24.36 Aligned_cols=48 Identities=27% Similarity=0.501 Sum_probs=36.2
Q ss_pred hhhhhccccccccccHHhHHHHHHHHHhcchHHHHHHhhhhhcCCchHHHHHHH
Q psy11497 4 FSFQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVH 57 (69)
Q Consensus 4 ~lL~ELTD~Dv~~e~~e~~~~Lv~aL~e~~llelLv~nL~RLdE~~e~e~~gV~ 57 (69)
-.|.+++.+||.-+.=-|++.+..|=++.+. -++||++..+.++..++
T Consensus 176 ~~LAr~~eVDVskeGV~GAknFFeAKI~~qs------~~s~fe~e~kaeqeerk 223 (244)
T KOG0041|consen 176 LRLARLSEVDVSKEGVSGAKNFFEAKIEAQS------PLSRFEEEIKAEQEERK 223 (244)
T ss_pred HHHHHhcccchhhhhhhhHHHHHHHHHHhhC------CCCcchhhhHHHHHHHH
Confidence 4578899999987766678888888666642 67899988777666554
No 10
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=24.15 E-value=29 Score=21.99 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=16.9
Q ss_pred hhhcCCchHHHHHHHHHHHH
Q psy11497 43 ERLDETVKEESDGVHNTLGK 62 (69)
Q Consensus 43 ~RLdE~~e~e~~gV~~~L~i 62 (69)
-|+|++.++++..|..-||+
T Consensus 9 ~RiD~~vK~eA~~Vl~~mGl 28 (88)
T COG3077 9 ARIDDEVKEEATAVLEEMGL 28 (88)
T ss_pred heecHHHHHHHHHHHHHhCC
Confidence 48899999999999887774
No 11
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=22.38 E-value=2.1e+02 Score=17.88 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=31.3
Q ss_pred HHhHHHHHHHHHhc-chHHHHHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 19 EEGTESLLTALLDQ-QVCALLVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 19 ~e~~~~Lv~aL~e~-~llelLv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
+.....++.+--.. .-+.-+++.| .||..+. .-.-||.+|-+++-|+
T Consensus 20 ~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~--~w~~v~KsL~llh~ll 68 (127)
T smart00273 20 GKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK--NWRVVYKALILLHYLL 68 (127)
T ss_pred HHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHH
Confidence 34455555554444 4455555555 7888865 6888999999998775
No 12
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=21.27 E-value=30 Score=21.35 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.4
Q ss_pred hhhcCCchHHHHHHHHHHHH
Q psy11497 43 ERLDETVKEESDGVHNTLGK 62 (69)
Q Consensus 43 ~RLdE~~e~e~~gV~~~L~i 62 (69)
-|+|++.+.++..|+..+|+
T Consensus 6 vRiD~~lK~~A~~vl~~lGl 25 (80)
T PRK11235 6 VRVDDELKARAYAVLEKLGV 25 (80)
T ss_pred EEeCHHHHHHHHHHHHHhCC
Confidence 37888888899999988875
Done!