Query psy11497
Match_columns 69
No_of_seqs 102 out of 123
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:54:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 74.1 3.3 0.00011 30.7 3.8 42 19-60 64-105 (341)
2 3onk_A Epsin-3, ENT3; helix, p 44.5 22 0.00077 23.1 3.3 47 21-67 31-78 (150)
3 1xgw_A Epsin 4; ENTH, enthopro 30.8 60 0.0021 21.6 3.8 62 6-67 39-101 (176)
4 4fxe_A Antitoxin RELB; toxin/a 25.7 12 0.00041 22.0 -0.4 20 43-62 6-25 (79)
5 1vdy_A Hypothetical protein (R 24.7 1.4E+02 0.0048 19.0 6.3 60 6-68 16-78 (140)
6 1eyh_A Epsin; superhelix of he 16.7 2E+02 0.0067 18.2 4.0 29 38-67 42-71 (144)
7 4g26_A Pentatricopeptide repea 16.3 89 0.003 22.9 2.5 45 2-47 159-203 (501)
8 1inz_A EPS15-interacting porte 12.9 2E+02 0.0069 18.3 3.3 45 22-67 44-89 (148)
9 3tpo_A Importin subunit alpha- 12.5 1.5E+02 0.0051 21.3 2.8 35 27-67 414-448 (529)
10 3ul1_B Importin subunit alpha- 11.5 1.6E+02 0.0056 21.0 2.7 35 27-67 395-429 (510)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=74.08 E-value=3.3 Score=30.73 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHhcchHHHHHHhhhhhcCCchHHHHHHHHHH
Q psy11497 19 EEGTESLLTALLDQQVCALLVQNLERLDETVKEESDGVHNTL 60 (69)
Q Consensus 19 ~e~~~~Lv~aL~e~~llelLv~nL~RLdE~~e~e~~gV~~~L 60 (69)
.|....|+..+...+++.+|+.||.+|+=+..-|..-||+.+
T Consensus 64 ~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~l 105 (341)
T 1upk_A 64 TEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNI 105 (341)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHH
Confidence 567899999999999999999999999876555666666654
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=44.52 E-value=22 Score=23.08 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcchHHHHHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 21 GTESLLTALLDQQVCALLVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 21 ~~~~Lv~aL~e~~llelLv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
....+..+=.+-.-+.-.++-| .||++.....-.-||.||.++|-|+
T Consensus 31 ~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl 78 (150)
T 3onk_A 31 LMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLI 78 (150)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHH
Confidence 3444554433333334455555 7898876677889999999999876
No 3
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=30.85 E-value=60 Score=21.60 Aligned_cols=62 Identities=19% Similarity=0.097 Sum_probs=39.4
Q ss_pred hhhccccccccccHHhHHHHHHHHHhcchHHHHHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 6 FQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 6 L~ELTD~Dv~~e~~e~~~~Lv~aL~e~~llelLv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
+.|-|..|.-.-.......+..+=.+-.-+.-.++-| .||-......-.-||.+|.++|.|+
T Consensus 39 VreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl 101 (176)
T 1xgw_A 39 VREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLI 101 (176)
T ss_dssp HHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 3445555533222334566666655555666677777 8864434567788999999999876
No 4
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=25.67 E-value=12 Score=21.95 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.9
Q ss_pred hhhcCCchHHHHHHHHHHHH
Q psy11497 43 ERLDETVKEESDGVHNTLGK 62 (69)
Q Consensus 43 ~RLdE~~e~e~~gV~~~L~i 62 (69)
-|+|++-+.++..|+..||+
T Consensus 6 ~RiD~~lK~~a~~v~~~lGl 25 (79)
T 4fxe_A 6 LRIDDELKARSYAALEKMGV 25 (79)
T ss_dssp EECCHHHHHHHHHHHHHHTC
T ss_pred EEcCHHHHHHHHHHHHHhCC
Confidence 37888888999999998885
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=24.73 E-value=1.4e+02 Score=19.03 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=36.3
Q ss_pred hhhccccccccccHHhHHHHHHHHHhc--chH-HHHHHhhhhhcCCchHHHHHHHHHHHHhhcccC
Q psy11497 6 FQELTDVDVLNESEEGTESLLTALLDQ--QVC-ALLVQNLERLDETVKEESDGVHNTLGKLVTPLG 68 (69)
Q Consensus 6 L~ELTD~Dv~~e~~e~~~~Lv~aL~e~--~ll-elLv~nL~RLdE~~e~e~~gV~~~L~iiENLl~ 68 (69)
+.+-|..|.-.-.--....+++...+. +.+ +++---+.||+.... .=+|.+|-|++.|+.
T Consensus 16 V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~---~vk~KaL~lL~yL~~ 78 (140)
T 1vdy_A 16 IDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSP---IVKQKALRLIKYAVG 78 (140)
T ss_dssp HHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSH---HHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCc---ceeehHHHHHHHHHH
Confidence 445555443332223355666665554 443 333344589998754 379999999999875
No 6
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=16.71 E-value=2e+02 Score=18.24 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 38 LVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 38 Lv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
.++-| .||++.. ..-.-||.+|.++|.|+
T Consensus 42 Im~~l~kRL~d~~-k~Wr~vyKaL~lleyLl 71 (144)
T 1eyh_A 42 IMSMIWKRLNDHG-KNWRHVYKAMTLMEYLI 71 (144)
T ss_dssp HHHHHHHHHSCCG-GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cchHHHhHHHHHHHHHH
Confidence 34444 7887743 45678999999999875
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=16.34 E-value=89 Score=22.87 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=28.1
Q ss_pred cchhhhhccccccccccHHhHHHHHHHHHhcchHHHHHHhhhhhcC
Q psy11497 2 KCFSFQELTDVDVLNESEEGTESLLTALLDQQVCALLVQNLERLDE 47 (69)
Q Consensus 2 ~~~lL~ELTD~Dv~~e~~e~~~~Lv~aL~e~~llelLv~nL~RLdE 47 (69)
|.+++.++....+..+ ......|++++...+-++-..+-|.++.+
T Consensus 159 A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 159 AYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4556666665555444 34567777777777766666666666655
No 8
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=12.90 E-value=2e+02 Score=18.30 Aligned_cols=45 Identities=7% Similarity=0.083 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcchHHHHHHhh-hhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 22 TESLLTALLDQQVCALLVQNL-ERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 22 ~~~Lv~aL~e~~llelLv~nL-~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
...+..+=.+-.-+.-.++-| .||++.. ..-.-||.+|-++|.|+
T Consensus 44 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-k~WR~vyKaL~lleyLl 89 (148)
T 1inz_A 44 MSEIADLTYNVVAFSEIMSMIWKRLNDHG-KNWRHVYKAMTLMEYLI 89 (148)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHHHGGGCCS-SCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHhhHHHHHHHHHHHHccCC-cchhHhhHHHHHHHHHH
Confidence 455555533333334444444 7888643 34668999999999876
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=12.46 E-value=1.5e+02 Score=21.27 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=22.7
Q ss_pred HHHHhcchHHHHHHhhhhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 27 TALLDQQVCALLVQNLERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 27 ~aL~e~~llelLv~nL~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
..|++.+++..|++-|.- .|.+-+.++|..++|++
T Consensus 414 ~~l~~~g~i~~L~~LL~~------~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 414 VYLVHCGIIEPLMNLLSA------KDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHhcC------CCHHHHHHHHHHHHHHH
Confidence 457788888888877642 13345666676666664
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=11.46 E-value=1.6e+02 Score=21.04 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=23.6
Q ss_pred HHHHhcchHHHHHHhhhhhcCCchHHHHHHHHHHHHhhccc
Q psy11497 27 TALLDQQVCALLVQNLERLDETVKEESDGVHNTLGKLVTPL 67 (69)
Q Consensus 27 ~aL~e~~llelLv~nL~RLdE~~e~e~~gV~~~L~iiENLl 67 (69)
..|++.++++.|++-|.- .|.+-+.++|..++|++
T Consensus 395 ~~L~~~g~i~~L~~LL~~------~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 395 VYLVHCGIIEPLMNLLSA------KDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcC------CCHHHHHHHHHHHHHHH
Confidence 457788888888877642 13456677777777765
Done!