BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11498
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41996|CPG2_CAEEL Chondroitin proteoglycan-2 OS=Caenorhabditis elegans GN=cpg-2 PE=1
SV=3
Length = 524
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 13 PPCEFKYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDELKD 66
P CE K + CSTN++ C G + C L ++ + C+WP ++ +
Sbjct: 245 PTCEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAE 298
>sp|Q6RY07|CHIA_RAT Acidic mammalian chitinase OS=Rattus norvegicus GN=Chia PE=2 SV=1
Length = 473
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 35 CEEGYPYLQPCEPGLAYDDRVHKCNWP 61
C G Y Q C+ GL +D + CNWP
Sbjct: 447 CINGITYQQHCQAGLVFDTSCNCCNWP 473
>sp|Q91XA9|CHIA_MOUSE Acidic mammalian chitinase OS=Mus musculus GN=Chia PE=1 SV=2
Length = 473
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 32 YIKCEEGYPYLQPCEPGLAYDDRVHKCNWP 61
+ +C G Y Q C+ GL +D + CNWP
Sbjct: 444 FWQCINGITYQQHCQAGLVFDTSCNCCNWP 473
>sp|Q7TLR9|VP91_NPVCF Capsid-associated protein Vp91 OS=Choristoneura fumiferana nuclear
polyhedrosis virus GN=ORF78 PE=3 SV=1
Length = 833
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 96 PRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCL 134
P FP + C +G + C DG++FD A +TC+
Sbjct: 236 PYFPEALLVNEFVECRNGEHVVAQCADGQVFDRALMTCV 274
>sp|Q95M17|CHIA_BOVIN Acidic mammalian chitinase OS=Bos taurus GN=CHIA PE=1 SV=1
Length = 472
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 32 YIKCEEGYPYLQPCEPGLAYDDRVHKCNW 60
+ C G Y Q C GL +D H CNW
Sbjct: 443 FWNCVNGITYKQNCLTGLVFDTSCHCCNW 471
>sp|Q8K9P7|TOP1_BUCAP DNA topoisomerase 1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=topA PE=3 SV=1
Length = 853
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 8 IPFNNPPCE---FKYGIYAESSACSTNYIKCEE 37
I NNP C K GI+ +S CS IKCE+
Sbjct: 669 ICINNPSCNGYNLKKGIFKKSLNCSLKKIKCEK 701
>sp|A8XWX5|CPG2_CAEBR Chondroitin proteoglycan 2 OS=Caenorhabditis briggsae GN=cpg-2 PE=3
SV=2
Length = 491
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 12 NPPCE-FKYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDELKDIGCN 70
N CE + G Y+ S C+T Y C + C L YD KC W +++ CN
Sbjct: 125 NNVCEGLEDGAYS-SGGCTTYYFFCTDNTARFLSCPTPLFYDVATQKCAWKALVEE--CN 181
Query: 71 SEAIV 75
E I+
Sbjct: 182 GEIII 186
>sp|Q1LPH7|FENR1_RALME Ferredoxin--NADP reductase 1 OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=Rmet_1063 PE=3 SV=1
Length = 353
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 109 TCVDGHPRLISCGD-GKLFDEAS-LTCLG 135
TC +GHPRL+ D GK FD A+ L C G
Sbjct: 103 TCTNGHPRLLVTTDAGKRFDVAAVLICAG 131
>sp|Q9BZP6|CHIA_HUMAN Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1
Length = 476
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 35 CEEGYPYLQPCEPGLAYDDRVHKCNW 60
C G Y Q C+ GL +D CNW
Sbjct: 450 CVNGVTYQQNCQAGLVFDTSCDCCNW 475
>sp|Q9W5U2|CHIT3_DROME Probable chitinase 3 OS=Drosophila melanogaster GN=Cht3 PE=2 SV=2
Length = 2286
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 30 TNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDELK 65
+ Y+ C C PGL Y++R+ C+WP K
Sbjct: 882 SKYLFCLWNRLQASDCPPGLHYNERIGNCDWPAAAK 917
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.142 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,585,954
Number of Sequences: 539616
Number of extensions: 2701222
Number of successful extensions: 3821
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3783
Number of HSP's gapped (non-prelim): 44
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)