Query psy11498
Match_columns 143
No_of_seqs 128 out of 1260
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:55:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01607 CBM_14: Chitin bindin 99.4 7.7E-14 1.7E-18 81.6 2.0 48 95-142 6-53 (53)
2 PF01607 CBM_14: Chitin bindin 99.3 7.9E-13 1.7E-17 77.2 3.5 48 15-63 1-49 (53)
3 smart00494 ChtBD2 Chitin-bindi 99.2 2.1E-11 4.6E-16 71.6 5.0 50 14-64 2-52 (56)
4 smart00494 ChtBD2 Chitin-bindi 99.2 2.1E-11 4.5E-16 71.7 4.4 46 95-140 8-53 (56)
5 PF03427 CBM_19: Carbohydrate 91.5 0.21 4.5E-06 30.0 2.5 20 106-125 36-55 (61)
6 PF03427 CBM_19: Carbohydrate 87.3 0.69 1.5E-05 27.7 2.5 22 30-51 35-56 (61)
7 PF08475 Baculo_VP91_N: Viral 60.8 9.3 0.0002 28.0 2.7 38 97-136 106-143 (183)
8 PF12662 cEGF: Complement Clr- 50.9 15 0.00032 17.7 1.7 18 119-136 5-22 (24)
9 PF01826 TIL: Trypsin Inhibito 47.5 3.2 7E-05 23.7 -1.2 18 119-137 36-53 (55)
10 PF08475 Baculo_VP91_N: Viral 43.9 25 0.00054 25.8 2.7 37 21-60 106-142 (183)
11 cd00064 FU Furin-like repeats. 42.4 23 0.0005 19.5 1.9 17 118-134 33-49 (49)
12 PF07645 EGF_CA: Calcium-bindi 31.2 23 0.0005 19.0 0.6 32 26-58 10-42 (42)
13 PF09064 Tme5_EGF_like: Thromb 30.4 43 0.00094 17.6 1.5 21 35-55 12-32 (34)
14 PF12191 stn_TNFRSF12A: Tumour 23.5 25 0.00054 24.2 -0.1 20 115-134 31-50 (129)
15 PF00220 Hormone_4: Neurohypop 22.8 44 0.00095 12.3 0.5 6 118-123 4-9 (9)
No 1
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.41 E-value=7.7e-14 Score=81.58 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCccEEcCCCceeeeeCCCCCceecCCCCCCCCCCCCCC
Q psy11498 95 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDYTDK 142 (143)
Q Consensus 95 ~g~~~~p~~C~~y~~C~~g~~~~~~Cp~g~~Fn~~~~~C~~~~~v~~~ 142 (143)
.|+++++.+|++||+|.+|.++++.||.|++||+.+++|+++++|..|
T Consensus 6 ~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 6 DGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 578999999999999999999999999999999999999999997765
No 2
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.35 E-value=7.9e-13 Score=77.24 Aligned_cols=48 Identities=29% Similarity=0.673 Sum_probs=36.3
Q ss_pred CCC-CCceeeCCCCcccccEEcCCCceeEecCCCCCeeeCCCCccCCCCC
Q psy11498 15 CEF-KYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDE 63 (143)
Q Consensus 15 C~~-~~g~~p~~~~C~~~y~~C~~g~~~~~~Cp~gl~Fn~~~~~C~~~~~ 63 (143)
|+. .+|+|+++.+|+ +||+|.+|+++++.||.|++||..++.|+++..
T Consensus 1 C~~~~~~~~~~~~~C~-~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~ 49 (53)
T PF01607_consen 1 CPGRGDGFYPHPDDCR-KYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSN 49 (53)
T ss_dssp ----SSEEE--SS-SS-EEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT
T ss_pred CCccCCeeEeCCCCCC-EEEEeeCCcEECCCCcCCCEECcCcCEEcCCcc
Confidence 443 478999999999 999999999999999999999999999999987
No 3
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.22 E-value=2.1e-11 Score=71.62 Aligned_cols=50 Identities=34% Similarity=0.961 Sum_probs=45.6
Q ss_pred CCCC-CCceeeCCCCcccccEEcCCCceeEecCCCCCeeeCCCCccCCCCCC
Q psy11498 14 PCEF-KYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDEL 64 (143)
Q Consensus 14 ~C~~-~~g~~p~~~~C~~~y~~C~~g~~~~~~Cp~gl~Fn~~~~~C~~~~~~ 64 (143)
.|.. ..|+++++.+|+ +||+|.+|....+.||.|++||..++.|+++..+
T Consensus 2 ~C~~~~~g~~~~~~~C~-~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~ 52 (56)
T smart00494 2 ECPGRGDGLYPHPTDCS-KYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNV 52 (56)
T ss_pred cCCCCCCccccCcccCC-eeEEcCCCcEEeccCcCCCeECCCCCCcCCcccC
Confidence 4654 468999999999 8999999999999999999999999999999876
No 4
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.21 E-value=2.1e-11 Score=71.66 Aligned_cols=46 Identities=33% Similarity=0.621 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCccEEcCCCceeeeeCCCCCceecCCCCCCCCCCCC
Q psy11498 95 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDYT 140 (143)
Q Consensus 95 ~g~~~~p~~C~~y~~C~~g~~~~~~Cp~g~~Fn~~~~~C~~~~~v~ 140 (143)
.|+++++.+|++||+|..|.++.+.||.|++||..++.|++++.+.
T Consensus 8 ~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~ 53 (56)
T smart00494 8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVG 53 (56)
T ss_pred CccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCC
Confidence 5799999999999999999999999999999999999999998743
No 5
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=91.47 E-value=0.21 Score=29.98 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.8
Q ss_pred ccEEcCCCceeeeeCCCCCc
Q psy11498 106 RLITCVDGHPRLISCGDGKL 125 (143)
Q Consensus 106 ~y~~C~~g~~~~~~Cp~g~~ 125 (143)
+|-+|.+|.++.+.||+|++
T Consensus 36 ~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 36 SFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CEEEcCCCcEEEeeCCCCCE
Confidence 69999999999999999986
No 6
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=87.32 E-value=0.69 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=19.8
Q ss_pred cccEEcCCCceeEecCCCCCee
Q psy11498 30 TNYIKCEEGYPYLQPCEPGLAY 51 (143)
Q Consensus 30 ~~y~~C~~g~~~~~~Cp~gl~F 51 (143)
++|-+|.+|+..+..||+|+.=
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~C 56 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTTC 56 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCEE
Confidence 4799999999999999999863
No 7
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=60.77 E-value=9.3 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCCCCCCCCccEEcCCCceeeeeCCCCCceecCCCCCCCC
Q psy11498 97 RFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGP 136 (143)
Q Consensus 97 ~~~~p~~C~~y~~C~~g~~~~~~Cp~g~~Fn~~~~~C~~~ 136 (143)
.-+|+.|=.+|..=..-.+..+.||.+..||.. +|+..
T Consensus 106 V~~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp~ 143 (183)
T PF08475_consen 106 VRPHPNDPTKFIARGDDGWVDMDCPENERFDGN--KCVPI 143 (183)
T ss_pred eecCCCCCceEEEEecCCcEEEeCCCccccccc--ceeec
Confidence 457888889998877666899999999999999 88754
No 8
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=50.87 E-value=15 Score=17.71 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.2
Q ss_pred eCCCCCceecCCCCCCCC
Q psy11498 119 SCGDGKLFDEASLTCLGP 136 (143)
Q Consensus 119 ~Cp~g~~Fn~~~~~C~~~ 136 (143)
+|++|+..++....|..-
T Consensus 5 ~C~~Gy~l~~d~~~C~DI 22 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCEDI 22 (24)
T ss_pred eCCCCCcCCCCCCccccC
Confidence 699999999998888753
No 9
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=47.49 E-value=3.2 Score=23.74 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=14.7
Q ss_pred eCCCCCceecCCCCCCCCC
Q psy11498 119 SCGDGKLFDEASLTCLGPE 137 (143)
Q Consensus 119 ~Cp~g~~Fn~~~~~C~~~~ 137 (143)
.|+.|+|+|.. +.|+.++
T Consensus 36 ~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 36 FCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EETTTEEEETT-SEEEEGG
T ss_pred CCCCCeeEcCC-CCEEcHH
Confidence 58999999988 8887654
No 10
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=43.94 E-value=25 Score=25.81 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=31.8
Q ss_pred eeeCCCCcccccEEcCCCceeEecCCCCCeeeCCCCccCC
Q psy11498 21 IYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNW 60 (143)
Q Consensus 21 ~~p~~~~C~~~y~~C~~g~~~~~~Cp~gl~Fn~~~~~C~~ 60 (143)
+-+++.+=+ +|..=.+--...+.||.+..||.. +|+.
T Consensus 106 V~~~~~d~~-kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp 142 (183)
T PF08475_consen 106 VRPHPNDPT-KFIARGDDGWVDMDCPENERFDGN--KCVP 142 (183)
T ss_pred eecCCCCCc-eEEEEecCCcEEEeCCCccccccc--ceee
Confidence 557888888 998877666999999999999999 8884
No 11
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=42.37 E-value=23 Score=19.51 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=13.6
Q ss_pred eeCCCCCceecCCCCCC
Q psy11498 118 ISCGDGKLFDEASLTCL 134 (143)
Q Consensus 118 ~~Cp~g~~Fn~~~~~C~ 134 (143)
..||.++++|.....|.
T Consensus 33 ~~C~~~~~~~~~~~~C~ 49 (49)
T cd00064 33 SECPEGTYADTEGGVCL 49 (49)
T ss_pred ccCCCCceecCcCCcCC
Confidence 37999999997777763
No 12
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=31.22 E-value=23 Score=18.98 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=21.6
Q ss_pred CCcccccEEcCCCcee-EecCCCCCeeeCCCCcc
Q psy11498 26 SACSTNYIKCEEGYPY-LQPCEPGLAYDDRVHKC 58 (143)
Q Consensus 26 ~~C~~~y~~C~~g~~~-~~~Cp~gl~Fn~~~~~C 58 (143)
..|. ..-.|+|-... .=.|++|+..+.....|
T Consensus 10 ~~C~-~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 10 HNCP-ENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSSS-TTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CcCC-CCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 3566 66777765433 33689999987776665
No 13
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=30.39 E-value=43 Score=17.60 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=13.3
Q ss_pred cCCCceeEecCCCCCeeeCCC
Q psy11498 35 CEEGYPYLQPCEPGLAYDDRV 55 (143)
Q Consensus 35 C~~g~~~~~~Cp~gl~Fn~~~ 55 (143)
|.......=.||+|++.|...
T Consensus 12 CDpn~~~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 12 CDPNSPGQCFCPEGYILDEGS 32 (34)
T ss_pred cCCCCCCceeCCCceEecCCc
Confidence 444344455789999887653
No 14
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=23.49 E-value=25 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.2
Q ss_pred eeeeeCCCCCceecCCCCCC
Q psy11498 115 PRLISCGDGKLFDEASLTCL 134 (143)
Q Consensus 115 ~~~~~Cp~g~~Fn~~~~~C~ 134 (143)
+-...||.|..||+....|+
T Consensus 31 ~~~~~Cp~G~sWs~dLdkCm 50 (129)
T PF12191_consen 31 PGTTPCPRGSSWSADLDKCM 50 (129)
T ss_dssp CSCSSS-SSEEEETTTTEEE
T ss_pred CCCCCCCCCCcCcccccccc
Confidence 44578999999999999985
No 15
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=22.76 E-value=44 Score=12.25 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=3.0
Q ss_pred eeCCCC
Q psy11498 118 ISCGDG 123 (143)
Q Consensus 118 ~~Cp~g 123 (143)
..||-|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 455543
Done!