RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11498
         (143 letters)



>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
          tridentatus) [TaxId: 6853]}
          Length = 73

 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 13 PPCEFKYGIYAESSACSTNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDE 63
           PC    G      +C  ++  C +    L+ C  GL Y+  +  C+WP +
Sbjct: 10 SPCL-DDGPNVNLYSCC-SFYNCHKCLARLENCPKGLHYNAYLKVCDWPSK 58



 Score = 28.4 bits (63), Expect = 0.088
 Identities = 7/41 (17%), Positives = 10/41 (24%)

Query: 98  FPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPED 138
                       C     RL +C  G  ++     C  P  
Sbjct: 18  NVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSK 58


>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 105

 Score = 23.8 bits (51), Expect = 5.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 86  HSVAAKFWPYPRFPVPGDRERLITCVDGHPRLISCGD 122
           H++ A+   +P  P P +RE+L T +  +  L  CG+
Sbjct: 17  HTLLAR---FPDEPTPEEREKLHTFIGLYAELYPCGE 50


>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase
           RmlC {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 184

 Score = 23.9 bits (51), Expect = 7.1
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 7   VIPFNNPPCEFKYGIYAESSACS-TNYIKCEEGYPYLQPCEPGLAYDDRVHKCNWPDELK 65
           +   N        G        S       +    +    E  + ++D   K +WP +  
Sbjct: 105 LSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA 164

Query: 66  DI 67
            +
Sbjct: 165 PL 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.142    0.481 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 612,795
Number of extensions: 29027
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 11
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.8 bits)