BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11499
         (70 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7TLR9|VP91_NPVCF Capsid-associated protein Vp91 OS=Choristoneura fumiferana nuclear
           polyhedrosis virus GN=ORF78 PE=3 SV=1
          Length = 833

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 23  PRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCL 61
           P FP        + C +G   +  C DG++FD A +TC+
Sbjct: 236 PYFPEALLVNEFVECRNGEHVVAQCADGQVFDRALMTCV 274


>sp|Q1LPH7|FENR1_RALME Ferredoxin--NADP reductase 1 OS=Ralstonia metallidurans (strain
           CH34 / ATCC 43123 / DSM 2839) GN=Rmet_1063 PE=3 SV=1
          Length = 353

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 36  TCVDGHPRLISCGD-GKLFDEAS-LTCLG 62
           TC +GHPRL+   D GK FD A+ L C G
Sbjct: 103 TCTNGHPRLLVTTDAGKRFDVAAVLICAG 131


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.146    0.501 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,238,546
Number of Sequences: 539616
Number of extensions: 1193477
Number of successful extensions: 1793
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 3
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)