Query psy11499
Match_columns 70
No_of_seqs 131 out of 833
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:56:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01607 CBM_14: Chitin bindin 99.6 5.6E-16 1.2E-20 82.9 2.9 48 22-69 6-53 (53)
2 smart00494 ChtBD2 Chitin-bindi 99.4 2E-13 4.3E-18 73.1 4.4 45 22-66 8-52 (56)
3 PF03427 CBM_19: Carbohydrate 89.9 0.38 8.1E-06 27.3 2.5 20 33-52 36-55 (61)
4 PF08475 Baculo_VP91_N: Viral 74.4 3.8 8.1E-05 27.8 2.8 38 24-63 106-143 (183)
5 PF01826 TIL: Trypsin Inhibito 66.1 1.2 2.7E-05 23.6 -0.8 19 45-64 35-53 (55)
6 cd00064 FU Furin-like repeats. 63.4 7.1 0.00015 20.0 1.9 29 31-60 20-48 (49)
7 PF12662 cEGF: Complement Clr- 53.2 9.7 0.00021 17.6 1.2 18 46-63 5-22 (24)
8 PF09064 Tme5_EGF_like: Thromb 44.3 26 0.00056 17.7 2.0 15 43-57 18-32 (34)
9 PF07645 EGF_CA: Calcium-bindi 34.5 24 0.00051 17.6 1.0 32 29-60 10-42 (42)
10 PF07422 s48_45: Sexual stage 28.6 19 0.00042 21.3 0.1 9 1-9 40-48 (115)
11 cd03529 Rieske_NirD Assimilato 27.0 92 0.002 18.1 2.8 21 44-64 63-84 (103)
12 PF04833 COBRA: COBRA-like pro 26.7 65 0.0014 21.7 2.3 34 27-60 43-82 (169)
13 smart00032 CCP Domain abundant 26.3 87 0.0019 15.2 2.4 24 34-57 27-54 (57)
14 PHA02714 CD-30-like protein; P 25.6 38 0.00082 21.1 0.9 20 42-61 19-38 (110)
15 PF08779 SARS_X4: SARS coronav 24.8 63 0.0014 19.1 1.7 20 33-52 4-25 (84)
16 PF00220 Hormone_4: Neurohypop 23.5 41 0.00089 12.2 0.5 6 45-50 4-9 (9)
17 PF12191 stn_TNFRSF12A: Tumour 23.4 40 0.00087 21.7 0.8 20 42-61 31-50 (129)
18 PF09207 Yeast-kill-tox: Yeast 20.6 50 0.0011 19.4 0.8 16 54-69 11-26 (87)
No 1
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.60 E-value=5.6e-16 Score=82.90 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=36.7
Q ss_pred CCCCCCccCCcccEEcCCCeeeEeeCCCCCeeecCCCcCCCCCCCCCC
Q psy11499 22 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDYTDK 69 (70)
Q Consensus 22 ~~~~p~p~dC~~yy~C~~G~~~~~~Cp~Gl~Fd~~~~~C~~p~~v~~C 69 (70)
.++++++.+|++||+|.+|.+.++.||.|++||+.++.|+++++|..|
T Consensus 6 ~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 6 DGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 457899999999999999999999999999999999999999997666
No 2
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.43 E-value=2e-13 Score=73.08 Aligned_cols=45 Identities=33% Similarity=0.642 Sum_probs=42.5
Q ss_pred CCCCCCccCCcccEEcCCCeeeEeeCCCCCeeecCCCcCCCCCCC
Q psy11499 22 YPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPEDY 66 (70)
Q Consensus 22 ~~~~p~p~dC~~yy~C~~G~~~~~~Cp~Gl~Fd~~~~~C~~p~~v 66 (70)
.++++||.+|++|++|.+|.+..+.||.|++||..++.|+++.++
T Consensus 8 ~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~ 52 (56)
T smart00494 8 DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNV 52 (56)
T ss_pred CccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccC
Confidence 458999999999999999999999999999999999999999875
No 3
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=89.92 E-value=0.38 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.7
Q ss_pred ccEEcCCCeeeEeeCCCCCe
Q psy11499 33 RLITCVDGHPRLISCGDGKL 52 (70)
Q Consensus 33 ~yy~C~~G~~~~~~Cp~Gl~ 52 (70)
+|-+|.+|+-....||+|++
T Consensus 36 ~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 36 SFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CEEEcCCCcEEEeeCCCCCE
Confidence 69999999999999999986
No 4
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=74.44 E-value=3.8 Score=27.84 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=32.3
Q ss_pred CCCCccCCcccEEcCCCeeeEeeCCCCCeeecCCCcCCCC
Q psy11499 24 RFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGP 63 (70)
Q Consensus 24 ~~p~p~dC~~yy~C~~G~~~~~~Cp~Gl~Fd~~~~~C~~p 63 (70)
.-+|+.|=+||..=.+---..+.||.+..||.. +|+..
T Consensus 106 V~~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp~ 143 (183)
T PF08475_consen 106 VRPHPNDPTKFIARGDDGWVDMDCPENERFDGN--KCVPI 143 (183)
T ss_pred eecCCCCCceEEEEecCCcEEEeCCCccccccc--ceeec
Confidence 448899999999987655888999999999999 88754
No 5
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=66.13 E-value=1.2 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=15.4
Q ss_pred eeCCCCCeeecCCCcCCCCC
Q psy11499 45 ISCGDGKLFDEASLTCLGPE 64 (70)
Q Consensus 45 ~~Cp~Gl~Fd~~~~~C~~p~ 64 (70)
=.|++|+++|.. +.|+.++
T Consensus 35 C~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EEETTTEEEETT-SEEEEGG
T ss_pred CCCCCCeeEcCC-CCEEcHH
Confidence 459999999998 8887653
No 6
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=63.36 E-value=7.1 Score=20.02 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=18.4
Q ss_pred CcccEEcCCCeeeEeeCCCCCeeecCCCcC
Q psy11499 31 RERLITCVDGHPRLISCGDGKLFDEASLTC 60 (70)
Q Consensus 31 C~~yy~C~~G~~~~~~Cp~Gl~Fd~~~~~C 60 (70)
|...+. .++..=+..||.+.++|.....|
T Consensus 20 C~~~~~-~~~~~Cv~~C~~~~~~~~~~~~C 48 (49)
T cd00064 20 CRHGFY-LDGGTCVSECPEGTYADTEGGVC 48 (49)
T ss_pred CcCccC-CCCCcccccCCCCceecCcCCcC
Confidence 444443 33333445899999999777666
No 7
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=53.23 E-value=9.7 Score=17.58 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.0
Q ss_pred eCCCCCeeecCCCcCCCC
Q psy11499 46 SCGDGKLFDEASLTCLGP 63 (70)
Q Consensus 46 ~Cp~Gl~Fd~~~~~C~~p 63 (70)
+|++|+..++....|..-
T Consensus 5 ~C~~Gy~l~~d~~~C~DI 22 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCEDI 22 (24)
T ss_pred eCCCCCcCCCCCCccccC
Confidence 499999999988888653
No 8
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=44.35 E-value=26 Score=17.66 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=11.4
Q ss_pred eEeeCCCCCeeecCC
Q psy11499 43 RLISCGDGKLFDEAS 57 (70)
Q Consensus 43 ~~~~Cp~Gl~Fd~~~ 57 (70)
..=.||+|++.|+..
T Consensus 18 ~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 18 GQCFCPEGYILDEGS 32 (34)
T ss_pred CceeCCCceEecCCc
Confidence 344599999998865
No 9
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=34.47 E-value=24 Score=17.61 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=23.1
Q ss_pred cCCcccEEcCCC-eeeEeeCCCCCeeecCCCcC
Q psy11499 29 GDRERLITCVDG-HPRLISCGDGKLFDEASLTC 60 (70)
Q Consensus 29 ~dC~~yy~C~~G-~~~~~~Cp~Gl~Fd~~~~~C 60 (70)
..|...-.|+|- -.+.=.|++|+..+.....|
T Consensus 10 ~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 10 HNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 468778888764 24455699999988777665
No 10
>PF07422 s48_45: Sexual stage antigen s48/45 domain; InterPro: IPR010884 This family contains sexual stage s48/45 antigens from Plasmodium (approximately 450 residues long). These are surface proteins expressed by Plasmodium male and female gametes that have been shown to play a conserved and important role in fertilisation [].; PDB: 2LOE_A.
Probab=28.63 E-value=19 Score=21.28 Aligned_cols=9 Identities=56% Similarity=1.427 Sum_probs=5.1
Q ss_pred CCcccCCCC
Q psy11499 1 IVGFKCPDS 9 (70)
Q Consensus 1 ~~gf~CP~~ 9 (70)
++||.||.+
T Consensus 40 ~iG~~CP~~ 48 (115)
T PF07422_consen 40 IIGFYCPKG 48 (115)
T ss_dssp -EEEE--TT
T ss_pred EEEEECCCC
Confidence 479999986
No 11
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=27.04 E-value=92 Score=18.10 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=18.0
Q ss_pred EeeCC-CCCeeecCCCcCCCCC
Q psy11499 44 LISCG-DGKLFDEASLTCLGPE 64 (70)
Q Consensus 44 ~~~Cp-~Gl~Fd~~~~~C~~p~ 64 (70)
.+.|| .|..||.+++.|..+.
T Consensus 63 ~i~Cp~Hg~~Fdl~tG~~~~~p 84 (103)
T cd03529 63 VVASPLYKQHFSLKTGRCLEDE 84 (103)
T ss_pred EEECCCCCCEEEcCCCCccCCC
Confidence 68899 7999999999997653
No 12
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=26.71 E-value=65 Score=21.66 Aligned_cols=34 Identities=18% Similarity=0.495 Sum_probs=27.6
Q ss_pred CccCCcccE------EcCCCeeeEeeCCCCCeeecCCCcC
Q psy11499 27 VPGDRERLI------TCVDGHPRLISCGDGKLFDEASLTC 60 (70)
Q Consensus 27 ~p~dC~~yy------~C~~G~~~~~~Cp~Gl~Fd~~~~~C 60 (70)
+..||.+|+ .|=.-.+.+..=|+|.-+|.++..|
T Consensus 43 dqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~nC 82 (169)
T PF04833_consen 43 DQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIGNC 82 (169)
T ss_pred cCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccccc
Confidence 677899988 6656678888889999999987766
No 13
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=26.29 E-value=87 Score=15.16 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=12.8
Q ss_pred cEEcCCCee----eEeeCCCCCeeecCC
Q psy11499 34 LITCVDGHP----RLISCGDGKLFDEAS 57 (70)
Q Consensus 34 yy~C~~G~~----~~~~Cp~Gl~Fd~~~ 57 (70)
-|.|..|.. ...+|..+-.|+...
T Consensus 27 ~~~C~~Gy~l~g~~~~~C~~~g~Ws~~~ 54 (57)
T smart00032 27 TYSCNPGYTLIGSSTITCLEDGTWSPPA 54 (57)
T ss_pred EEEcCCCCEEcCCCeeEECCCCEECCCC
Confidence 456665522 345666665565554
No 14
>PHA02714 CD-30-like protein; Provisional
Probab=25.59 E-value=38 Score=21.13 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=16.4
Q ss_pred eeEeeCCCCCeeecCCCcCC
Q psy11499 42 PRLISCGDGKLFDEASLTCL 61 (70)
Q Consensus 42 ~~~~~Cp~Gl~Fd~~~~~C~ 61 (70)
....+|+.+.++|++...|.
T Consensus 19 sf~kqC~~dYY~Dpe~g~Ct 38 (110)
T PHA02714 19 SFGKTCPKDYYLEPEDGLCT 38 (110)
T ss_pred hhhccCCCcccccCCCCcee
Confidence 44568999999999888775
No 15
>PF08779 SARS_X4: SARS coronavirus X4 like; InterPro: IPR014888 The structure of the coronavirus X4 protein (also known as 7a and U122) shows similarities to the immunoglobulin like fold and suggests a binding activity to integrin I domains []. ; PDB: 1XAK_A 1YO4_A.
Probab=24.78 E-value=63 Score=19.07 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=12.7
Q ss_pred ccEEcCCCeeeE--eeCCCCCe
Q psy11499 33 RLITCVDGHPRL--ISCGDGKL 52 (70)
Q Consensus 33 ~yy~C~~G~~~~--~~Cp~Gl~ 52 (70)
.|-.|+.|..++ ..||+|++
T Consensus 4 hyqecvrgttvllkepc~~~ty 25 (84)
T PF08779_consen 4 HYQECVRGTTVLLKEPCPSGTY 25 (84)
T ss_dssp EEEEEETTSEEEEE-SSTT-EE
T ss_pred hHHhHhcCceEEecCCCCCCCc
Confidence 366788886555 45888865
No 16
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=23.50 E-value=41 Score=12.16 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=3.1
Q ss_pred eeCCCC
Q psy11499 45 ISCGDG 50 (70)
Q Consensus 45 ~~Cp~G 50 (70)
..||.|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 456544
No 17
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=23.40 E-value=40 Score=21.74 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=15.9
Q ss_pred eeEeeCCCCCeeecCCCcCC
Q psy11499 42 PRLISCGDGKLFDEASLTCL 61 (70)
Q Consensus 42 ~~~~~Cp~Gl~Fd~~~~~C~ 61 (70)
+....||.|..||+....|.
T Consensus 31 ~~~~~Cp~G~sWs~dLdkCm 50 (129)
T PF12191_consen 31 PGTTPCPRGSSWSADLDKCM 50 (129)
T ss_dssp CSCSSS-SSEEEETTTTEEE
T ss_pred CCCCCCCCCCcCcccccccc
Confidence 45678999999999988875
No 18
>PF09207 Yeast-kill-tox: Yeast killer toxin; InterPro: IPR015290 Members of this entry, which are produced by Williopsis fungi, adopt a secondary structure consisting of eight strands in two beta sheets, in a Greek-key topology []. ; GO: 0008219 cell death, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1WKT_A.
Probab=20.62 E-value=50 Score=19.40 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=6.6
Q ss_pred ecCCCcCCCCCCCCCC
Q psy11499 54 DEASLTCLGPEDYTDK 69 (70)
Q Consensus 54 d~~~~~C~~p~~v~~C 69 (70)
|+.+..|||..|-.-|
T Consensus 11 dpn~gscdwkqnwntc 26 (87)
T PF09207_consen 11 DPNSGSCDWKQNWNTC 26 (87)
T ss_dssp -TTTS--B-S--TTS-
T ss_pred CCCCCccchhccccee
Confidence 6788899998765443
Done!