RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11499
         (70 letters)



>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR
          {Tachypleus tridentatus} SCOP: g.31.1.1
          Length = 74

 Score = 32.1 bits (73), Expect = 0.003
 Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 7/59 (11%)

Query: 2  VGFKCPDSVDPHSVAAKFWPYPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTC 60
          + F+C                              C     RL +C  G  ++     C
Sbjct: 2  LAFRCGRYSPCLDDG-------PNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVC 53


>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
           chitinase inhibitors, carbohyd metabolism, chitin
           degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
           sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
           1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
          Length = 445

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 20  WPYPRFPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTC 60
                +P P +R    +C  G     SC  G +F  +   C
Sbjct: 402 KADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCC 442


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.047
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 18/74 (24%)

Query: 11  DPHSVAAKFWPYPRFPVPGDRERLITC------VDGHPRLISCGDGKLFDEAS------L 58
           D H++AAK        +    + LI        +   P      +  LF          +
Sbjct: 100 DIHALAAKLLQENDTTLV-KTKELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLV 157

Query: 59  TCLG----PEDYTD 68
              G     +DY +
Sbjct: 158 AIFGGQGNTDDYFE 171


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.6 bits (55), Expect = 1.5
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 20/53 (37%)

Query: 38  VDGHPRLIS-CG----DGK-LFD--------------EASLTCLGPEDYTDKY 70
           +  +PR +S       DG   +D              E+SL  L P +Y   +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 25.0 bits (55), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 8/38 (21%)

Query: 27  VPGDRERL----ITCVDGHPRLISCGDGKLF-DEASLT 59
           VPGD  ++    I   DG  R+++  D  L  D+++LT
Sbjct: 197 VPGDILQVEEGTIIPADG--RIVT-DDAFLQVDQSALT 231


>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
           contain oxidoreductase, monoamine oxidase, NAD,
           extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
           sapiens}
          Length = 342

 Score = 23.6 bits (49), Expect = 8.2
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 7   PDSVDPHSVAAKFWPY--PRFPVPGDRERLITCVDGHPRLISCGDG 50
           P    P +   + W +            ++   +   P L   GDG
Sbjct: 275 PGLPQPIATKCQKWRHSQVTNAAANCPGQMT--LHHKPFLACGGDG 318


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.146    0.501 

Gapped
Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,204,852
Number of extensions: 57619
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 7
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)