RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11499
         (70 letters)



>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
          tridentatus) [TaxId: 6853]}
          Length = 73

 Score = 29.5 bits (66), Expect = 0.008
 Identities = 7/41 (17%), Positives = 10/41 (24%)

Query: 25 FPVPGDRERLITCVDGHPRLISCGDGKLFDEASLTCLGPED 65
                      C     RL +C  G  ++     C  P  
Sbjct: 18 NVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSK 58


>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 105

 Score = 24.9 bits (54), Expect = 0.67
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 13 HSVAAKFWPYPRFPVPGDRERLITCVDGHPRLISCGD 49
          H++ A+   +P  P P +RE+L T +  +  L  CG+
Sbjct: 17 HTLLAR---FPDEPTPEEREKLHTFIGLYAELYPCGE 50


>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 112

 Score = 21.9 bits (46), Expect = 8.4
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 13 HSVAAKFWPYPRFPVPGDRERLITCVDGHPRLISCGDG 50
          H++AA    YP  P P  ++ +   +    +   C + 
Sbjct: 19 HTLAAY---YPDMPTPEQQQDMAQFIHIFSKFYPCEEC 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.146    0.501 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 306,389
Number of extensions: 12087
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 4
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)