BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11500
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 26/342 (7%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
IGL+D+L +G+ PDGIVGHS+GE+ C YADGC + E+ +LAA+ RG+ E G M
Sbjct: 563 IGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAM 622
Query: 106 AAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA 165
AA+GL +++ K P + ACHN+ D+ T+SGP A V VE L +G+FA+ V
Sbjct: 623 AAVGLSWEECKQRCP--PGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTG 680
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 225
+A+HS ++ AP LLQ LKKVI PKPRS++W+S+SI E W S LA+TSSAEY+ NN
Sbjct: 681 GMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNN 740
Query: 226 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFIL 285
L+S V F+EA H+P +A+ +EIAPH LLQA+LKR L + IPL + +D ++F L
Sbjct: 741 LVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTI-IPLMKKDHRDNLEFFL 799
Query: 286 NSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQIKSYPAD 345
IG+L+L+G+D N L+P V++P RGT + + W+H + + PA
Sbjct: 800 AGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDV----------PAA 849
Query: 346 EEF----AGLFHEVYKTNVNR---------HTLRGYVLTPDT 374
E+F +Y + + HTL G VL P T
Sbjct: 850 EDFPNGSGSPSAAIYNIDTSSESPDHYLVDHTLDGRVLFPAT 891
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 7 EVVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGL 48
EVVI+G+ G PE + EF + L G VT D+RRW GL
Sbjct: 5 EVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGL 46
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 214/359 (59%), Gaps = 27/359 (7%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
I L+D+L +LG+ PDGI+GHS+GE+ C YADGC T E+ +L+++ RG E + + G M
Sbjct: 561 IALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEEAVLSSYWRGYCIKEANVLPGAM 620
Query: 106 AAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA 165
AA+GL +++ K P I ACHN+ D+ T+SGP A + ++ L + +F + V
Sbjct: 621 AAVGLSWEECKQRCP--PGIVPACHNSKDTVTISGPQAAMSEFLQQLKREDVFVKEVRTG 678
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 225
IA+HS ++ AP LL+ L+KVI PKPRS +W+S+SI E W LA+T SAEY NN
Sbjct: 679 GIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNN 738
Query: 226 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFIL 285
L+S V F+EA H+PA+A+ +EIAPH LLQA+LKRSL E IPL + +D ++F L
Sbjct: 739 LVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSL-ESSCTIIPLMKKDHRDNLEFFL 797
Query: 286 NSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQIKSYPAD 345
+++G+L+L G+ +N L+P V++P RGT + + W+H + + +P+
Sbjct: 798 SNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPS----AADFPSG 853
Query: 346 EEFAGLFHEVYKTNVN---------RHTLRGYVLTPDTS---------AQDETENLEQV 386
+ + VYK +V+ H + G VL P T A+ ++NLE+
Sbjct: 854 SSCSSV--AVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYLWLTWKTLARALSQNLEET 910
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 7 EVVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGLVDILFALGITPD 60
EVVI+G+ G PE + EF L G VT D+RRW GL + +G D
Sbjct: 3 EVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKD 56
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/270 (48%), Positives = 182/270 (67%), Gaps = 3/270 (1%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
IGL+D+L +G+ PDGIVGHS+GE+ C YADGC + E+ +LAA+ RG+ E G M
Sbjct: 163 IGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAM 222
Query: 106 AAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA 165
AA+GL +++ K P + A HN+ D+ T+SGP A V VE L +G+FA+ V
Sbjct: 223 AAVGLSWEECKQRCP--PGVVPAXHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTG 280
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 225
+A+HS ++ AP LLQ LKKVI PKPRS++W+S+SI E W S LA+TSSAEY+ NN
Sbjct: 281 GMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNN 340
Query: 226 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFIL 285
L+S V F+EA H+P +A+ +EIAPH LLQA+LKR L + IPL + +D ++F L
Sbjct: 341 LVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTI-IPLMKKDHRDNLEFFL 399
Query: 286 NSIGKLYLNGLDLNLAPLYPEVQYPVSRGT 315
IG+L+L+G+D N L+P V++P RGT
Sbjct: 400 AGIGRLHLSGIDANPNALFPPVEFPAPRGT 429
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 129/265 (48%), Positives = 180/265 (67%), Gaps = 3/265 (1%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
IGL+D+L +G+ PDGIVGHS+GE+ C YADGC + E+ +LAA+ RG+ E G M
Sbjct: 163 IGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAM 222
Query: 106 AAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA 165
AA+GL +++ K P + ACHN+ D+ T+SGP A V VE L +G+FA+ V
Sbjct: 223 AAVGLSWEECKQRCP--PGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTG 280
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 225
+A+HS ++ AP LLQ LKKVI PKPRS++W+S+SI E W S LA+TSSAEY+ NN
Sbjct: 281 GMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNN 340
Query: 226 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFIL 285
L+S V F+EA H+P +A+ +EIAPH LLQA+LKR L + IPL + +D ++F L
Sbjct: 341 LVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTI-IPLMKKDHRDNLEFFL 399
Query: 286 NSIGKLYLNGLDLNLAPLYPEVQYP 310
IG+L+L+G+D N L+P V++P
Sbjct: 400 AGIGRLHLSGIDANPNALFPPVEFP 424
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 16/287 (5%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHAR------GKASIETD 99
I L ++L G P ++G S+GE AY G + A +R G+A + +
Sbjct: 210 IALGELLRHHGAKPAAVIGQSLGEAASAYFAGGLSLRDATRAICSRSHLMGEGEAMLFGE 269
Query: 100 TIDGKMAAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFA 159
I MA + +++++ +D+P +E+ + A + GP V+A++ A+G FA
Sbjct: 270 YIR-LMALVEYSADEIREVFSDFPDLEVCVYAAPTQTVIGGPPEQVDAILARAEAEGKFA 328
Query: 160 RAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQ-TSS 218
R A H+ + P L L+ + P+ + I S++ E + P +
Sbjct: 329 RKFATKG-ASHTSQMDPLLGELTAELQGIKPT---SPTCGIFSTVHEGRYIKPGGEPIHD 384
Query: 219 AEYHTNNLLSSVFFEEA--SAHIPANAICIEIAPH--GLLQAILKRSLAEKEVVNIPLTL 274
EY L SV+F +A + +E+AP+ L+Q L + A + TL
Sbjct: 385 VEYWKKGLRHSVYFTHGIRNAVDSGHTTFLELAPNPVALMQVALTTADAGLHDAQLIPTL 444
Query: 275 RGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHF 321
+D V +++++ +LY+ G DL++ L+ P P F
Sbjct: 445 ARKQDEVSSMVSTMAQLYVYGHDLDIRTLFSRASGPQDYANIPPTRF 491
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 117/282 (41%), Gaps = 23/282 (8%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
+ L + + G+ P +VGHS GE+ A+ G T E R + + G
Sbjct: 622 VSLAALWRSHGVEPAAVVGHSQGEIAAAHVAGALTLEDAAKLVAVRSRV-LRRLGGQGGX 680
Query: 106 AAIGLGYKQMKDMLADYP-TIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNV 164
A+ GLG +Q + + + + IA N S ++G S ++ L+ A+ AR + V
Sbjct: 681 ASFGLGTEQAAERIGRFAGALSIASVNGPRSVVVAGESGPLDELIAECEAEAHKARRIPV 740
Query: 165 ANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPL-AQTSSAEYHT 223
+ A HS + LL L + P ++ G P+ T Y
Sbjct: 741 -DYASHSPQVESLREELLTELAGISPVSA-------DVALYSTTTGQPIDTATXDTAYWY 792
Query: 224 NNLLSSVFFEEASAHIPANAI--CIEIAPHGLL----QAILKRSLAEKEVVNIPLTLRGV 277
NL V F++A+ + +E++PH +L +A L +L + TLR
Sbjct: 793 ANLREQVRFQDATRQLAEAGFDAFVEVSPHPVLTVGIEATLDSALPADAGACVVGTLRRD 852
Query: 278 KDGVKFILNSIGKLYLNGLDLNLAPLYPEVQ------YPVSR 313
+ G+ ++G+ Y G++++ +P + + + YP R
Sbjct: 853 RGGLADFHTALGEAYAQGVEVDWSPAFADARPVELPVYPFQR 894
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 11/209 (5%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
+ L ++ + G+ P +VGHS GE+ A+ G T E R + + + + +G M
Sbjct: 606 VSLAELWRSYGVEPAAVVGHSQGEIAAAHVAGALTLEDAAKLVVGRSRL-MRSLSGEGGM 664
Query: 106 AAIGLGYKQMKDMLADYP-TIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNV 164
AA+ LG +++ L + + +A N S +SG + A E A+GI R ++V
Sbjct: 665 AAVALGEAAVRERLRPWQDRLSVAAVNGPRSVVVSGEPGALRAFSEDCAAEGIRVRDIDV 724
Query: 165 ANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTN 224
+ A HS I LL+ + +P+P + S+ G+ L A Y
Sbjct: 725 -DYASHSPQIERVREELLETTGDI--APRPARVTFHSTVESRSMDGTEL----DARYWYR 777
Query: 225 NLLSSVFFEEASAHIPANA--ICIEIAPH 251
NL +V F +A + + IE++PH
Sbjct: 778 NLRETVRFADAVTRLAESGYDAFIEVSPH 806
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 12/204 (5%)
Query: 55 LGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKA-SIETDTIDGKMAAIGLGYK 113
LG P G +GHS+GEL G A+ + A ARG+A S+ T+ G M ++
Sbjct: 168 LGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSVATEAPSG-MLSLRADLA 226
Query: 114 QMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRY 173
+++ A + +A N ++G +++ + E+ GI A + V++ A+HS
Sbjct: 227 AARELAAGTGAV-VAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH-AFHSPL 284
Query: 174 IAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFE 233
+APAA L + ++ P R + ++S++ W A E L V F
Sbjct: 285 MAPAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQLTGPVRFR 337
Query: 234 EASAHIPANAICIEIAPHGLLQAI 257
EA + + +E+ P +L A+
Sbjct: 338 EALGLL-DADLLVEVGPGRMLSAL 360
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 59 PDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAA-IGLGYKQMKD 117
PD + GHS+GE +A G F E + RG+ + D G MAA IGL +++++
Sbjct: 79 PDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGE--LMGDARGGGMAAVIGLDEERVRE 136
Query: 118 MLAD--YPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIA 175
+L ++IA N+ +SG ++ L A G V + A+HSR++
Sbjct: 137 LLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGAKKYTVLRVSAAFHSRFMR 196
Query: 176 PAAPRLLQYLK 186
PA ++L+
Sbjct: 197 PAMVEFGRFLE 207
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 59 PDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAA-IGLGYKQMKD 117
PD + GHS+GE +A G F E + RG+ + D G MAA IGL +++++
Sbjct: 79 PDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGE--LMGDARGGGMAAVIGLDEERVRE 136
Query: 118 MLAD--YPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIA 175
+L ++IA N+ +SG ++ L A G V + A+HSR++
Sbjct: 137 LLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGAKKYTVLRVSAAFHSRFMR 196
Query: 176 PAAPRLLQYLK 186
PA ++L+
Sbjct: 197 PAMVEFGRFLE 207
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 10/203 (4%)
Query: 55 LGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLGYKQ 114
LG P G +GHS+GEL G A+ + A ARG+A M ++
Sbjct: 168 LGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAATEAPSGMLSLRADLAA 227
Query: 115 MKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYI 174
+++ A + +A N ++G +++ + E+ GI A + V++ A+HS +
Sbjct: 228 ARELAAGTGAV-VAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH-AFHSPLM 285
Query: 175 APAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEE 234
APAA L + ++ P R + ++S++ W A E L V F E
Sbjct: 286 APAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQLTGPVRFRE 338
Query: 235 ASAHIPANAICIEIAPHGLLQAI 257
A + + +E+ P +L A+
Sbjct: 339 ALGLL-DADLLVEVGPGRMLSAL 360
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 51 ILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTI-DGKMAAI- 108
L A G P GHS+GE A G E + RG+ E + +G MAA+
Sbjct: 74 FLEAGGKPPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYMQEAVPVGEGAMAAVL 133
Query: 109 GLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNV-ANI 167
L ++++ L +EIA NA + +SG VE E L + AR V + +
Sbjct: 134 KLPLEEIQKALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERLKER--RARVVFLPVSA 191
Query: 168 AYHSRYIAPAAPRLLQYLKKVIPSPKPR 195
+HS +APA RL + L +V P +PR
Sbjct: 192 PFHSSLMAPARKRLAEDLAQV-PLRRPR 218
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 10/203 (4%)
Query: 55 LGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLGYKQ 114
LG P G +GHS+GEL G A+ + A ARG+A M ++
Sbjct: 165 LGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAATEAPSGMLSLRADLAA 224
Query: 115 MKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYI 174
+++ A + +A N ++G +++ + E+ GI A + V++ A+HS +
Sbjct: 225 ARELAAGTGAV-VAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH-AFHSPLM 282
Query: 175 APAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEE 234
APAA L + ++ P R + ++S++ W A E L V F E
Sbjct: 283 APAAEALRRAAGRL---PWRRPERPVASTVTGAWW----ADEDPVEVLVRQLTGPVRFRE 335
Query: 235 ASAHIPANAICIEIAPHGLLQAI 257
A + + +E+ P +L A+
Sbjct: 336 ALGLL-DADLLVEVGPGRMLSAL 357
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQ-MILAAHARGKASIETDTIDGKMAAI-GLGYK 113
G TPD + GHS+GE A GCF E + L A +A + + DG MAAI +
Sbjct: 82 GETPDFLAGHSLGEFNALLAAGCFDFETGLKLVAR---RAELMSQARDGAMAAIVNASRE 138
Query: 114 QMKDMLADYPTIE--IACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHS 171
Q++ L ++ ++ IA N +SGP+ ++ A E+L + A+HS
Sbjct: 139 QIERTLDEHGLVDTAIANDNTPSQLVISGPAHEI-ARAEALFQHDRVRYLRLNTSGAFHS 197
Query: 172 RYIAPAAPRLLQYLK 186
+++ PA +L+
Sbjct: 198 KFMRPAQQAFAAHLQ 212
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIE--TDTIDGKMAAIGLGYK 113
G+ P +GHS+GE+ G E+ + H RGK E + M +G+ +
Sbjct: 94 GLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQEACANKDASMMVVLGVSEE 153
Query: 114 QMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRY 173
+ + + A N L+G D++AL +L G ++A H +
Sbjct: 154 SLLSLCQRTKNVWCANFNGGMQVVLAGVKDDLKALEPTLKEMGAKRVVFLEMSVASHCPF 213
Query: 174 IAPAAPRLLQYLKKVI 189
+ P + + L+K +
Sbjct: 214 LEPMIFKFQELLEKSL 229
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 62 IVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTI-DGKMAA-IGLGYKQMKDM- 118
+ GHS+GE A G F+ RG A + +G MAA IGL K ++++
Sbjct: 94 VAGHSLGEYSALCAAGTFSLTDTARLLRIRGNAMQAAVAVGEGSMAALIGLDEKDVEEIC 153
Query: 119 --LADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAP 176
+A+ +IA N +SG + VE VE +G + + +HS + P
Sbjct: 154 EIVAEEGLCQIANDNGGGQIVISGEAKAVETAVEVASQKGAKRAVLLPVSAPFHSALMQP 213
Query: 177 AAPRLLQYLKKV 188
AA + L V
Sbjct: 214 AANAMKNALLTV 225
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTI-DGKMAAI-GLGYK 113
G P GHS+GE G E+ + RG+ E + +G AI GL
Sbjct: 86 GPKPQVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQYXQEAVPVGEGAXGAIIGLNEA 145
Query: 114 QMKDMLADYP---TIEIACHNASDSCTLSGPSADVEALVESLVAQGI-FARAVNVANIAY 169
+++ + + ++ A N++D +SG S V+ + +G A+ + V ++
Sbjct: 146 EIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNXAKTEGAKIAKRIPV-SVPS 204
Query: 170 HSRYIAPAAPRLLQYLKKV-IPSPK 193
H PAA RL Q + K+ I SPK
Sbjct: 205 HCPLXQPAADRLAQDIAKISIDSPK 229
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 57 ITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAI-GLGYKQ 114
+ PD +GHS+GE A + E + RG+ + T G MAA+ GL + +
Sbjct: 88 LNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPTGVGSMAAVLGLDFDK 147
Query: 115 M----KDMLADYPTIEIACHNASDSCTLSGPSADVEALVE---SLVAQGIFARAVNVANI 167
+ K + +D IE A N +SG A ++ LVE SL A+ + AV+
Sbjct: 148 VDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSG--- 204
Query: 168 AYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTN--- 224
+HS + Y+ + + R +K+ P+ Q +A+ T+
Sbjct: 205 PFHSSLMKVIEEDFSSYINQF----EWRDAKF------------PVVQNVNAQGETDKEV 248
Query: 225 -------NLLSSVFFEEASAHIPANAI--CIEIAPHGLLQAILKRSLAEKEVVNIPLTLR 275
L S V F ++ + + IEI P +L ++K+ + ++ +I TL
Sbjct: 249 IKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQ-TLE 307
Query: 276 GVK 278
VK
Sbjct: 308 DVK 310
>pdb|2OX4|A Chain A, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|B Chain B, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|C Chain C, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|D Chain D, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|E Chain E, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|F Chain F, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|G Chain G, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|H Chain H, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
Length = 403
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 124 TIEIACHNASDSCTLSGPSADVEALVES-----LVAQGIFARAVNVANIAYHSRYIAPAA 178
TI+I GP DV+ +VE+ LV+ FA+A+ NI ++ P
Sbjct: 191 TIKIGVERVEAIRNAVGP--DVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEEINTPLN 248
Query: 179 PRLLQYLKKVIPSPKPRS----SKWISSSILED 207
PRLL+ KK I P S+W LED
Sbjct: 249 PRLLKEAKKKIDIPLASGERIYSRWGFLPFLED 281
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTI-DGKMAAIGLGYKQ 114
G TP + GHSVGE+ A G + RG A E + + M+A+ G +
Sbjct: 78 GFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVTETGMSALLGGDPE 137
Query: 115 MKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYI 174
+ + + A N + +G + AL E + VA A+H+R++
Sbjct: 138 VSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVAG-AFHTRHM 196
Query: 175 APAAPRLLQYLKKVIPS-PK 193
APA +L + K + P+ PK
Sbjct: 197 APAVDKLAEAAKALTPADPK 216
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTI-DGKMAAIGLGYKQ 114
G TP + GHSVGE+ A G + RG A E + + M+A+ G +
Sbjct: 88 GFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVTETGMSALLGGDPE 147
Query: 115 MKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYI 174
+ + + A N + +G + AL E + VA A+H+R++
Sbjct: 148 VSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVAG-AFHTRHM 206
Query: 175 APAAPRLLQYLKKVIPS-PK 193
APA +L + K + P+ PK
Sbjct: 207 APAVDKLAEAAKALTPADPK 226
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTI-DGKMAAIGLGYKQ 114
G TP + GHSVGE+ A G + RG A E + + M+A+ G +
Sbjct: 77 GFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVTETGMSALLGGDPE 136
Query: 115 MKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYI 174
+ + + A N + +G + AL E + VA A+H+R++
Sbjct: 137 VSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVAG-AFHTRHM 195
Query: 175 APAAPRLLQYLKKVIPS-PK 193
APA +L + K + P+ PK
Sbjct: 196 APAVDKLAEAAKALTPADPK 215
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTID-GKMAAI-GLGYK 113
G P + GHS+GE A G + R +A + G MAAI GL
Sbjct: 88 GAQPSIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQAMQTAVPVGVGGMAAILGLDDD 147
Query: 114 QMKDMLADYP---TIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNV-ANIAY 169
++ + A+ +E NA ++G A +E E +G RA+ + + +
Sbjct: 148 TVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEKACEIAKEKGA-KRALPLPVSAPF 206
Query: 170 HSRYIAPAAPRLLQYLKKV-IPSPKPRSSKWISSSILED 207
HS + PA+ +L +YL V + +PK I +++ D
Sbjct: 207 HSSLLKPASDKLREYLAGVDVKAPKISVVNNIDVAVVSD 245
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 36/233 (15%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTID-GK 104
+ + +L G PD + G S+GE A G E + RG E D GK
Sbjct: 70 VAIYRLLQEKGYQPDMVAGLSLGEYSALVASGALDFEDAVALVAKRGAYMEEAAPADSGK 129
Query: 105 MAAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFA--RAV 162
M A+ + IE AC AS+ ++ + + A + ++A + A RAV
Sbjct: 130 MVAV---------LNTPVEVIEEACQKASELGVVTPANYNTPAQI--VIAGEVVAVDRAV 178
Query: 163 NVANIA-------------YHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAW 209
+ A +H+ + PA+ +L + L +V S + ++ +
Sbjct: 179 ELLQEAGAKRLIPLKVSGPFHTSLLEPASQKLAETLAQV-------SFSDFTCPLVGNTE 231
Query: 210 GSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAIC--IEIAPHGLLQAILKR 260
+ + + A+ T + V F E+ + I IEI P +L +K+
Sbjct: 232 AAVMQKEDIAQLLTRQVKEPVRFYESIGVMQEAGISNFIEIGPGKVLSGFVKK 284
>pdb|3VAV|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|F Chain F, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|G Chain G, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|H Chain H, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|I Chain I, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|J Chain J, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
Length = 275
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 127 IACHNASDSCTLSGPSADVEALVESL--VAQG-IFARAVNVANIAYHSRYIAPAAPRLL 182
+ C++AS + L + DV+ + +SL V QG V + +IAYH+ +A A PR L
Sbjct: 34 LTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRAL 92
>pdb|2QGS|A Chain A, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
pdb|2QGS|B Chain B, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
Length = 225
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 63 VGHSVGELGCAYADGCFTAE-QMILAAHARGKASIETDTIDGKMAAIGLGYKQMKDMLA 120
GH + + Y + C+ A+ + I +S+ DT+D K+ L Y Q+K L+
Sbjct: 23 TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLTDEILAYDQLKQFLS 81
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 194 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAIC 245
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 128 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLL 180
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 194 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAIC 245
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 128 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLL 180
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 194 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAIC 245
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 128 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLL 180
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 194 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAIC 245
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 12 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVLL 64
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
Query: 62 IVGHSVGELGCAYADGCFTAEQMILAAHARG----KASIETDTIDGKMAAIGLGYKQMKD 117
+ GHSVGE+ G A+ + A RG KA T G A +G ++
Sbjct: 107 VAGHSVGEIAAYAIAGVIAADDAVALAATRGAEMAKACATEPT--GMSAVLGGDETEVLS 164
Query: 118 MLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPA 177
L + A NA+ +G +E L E A+ RA+ VA A+H+ ++APA
Sbjct: 165 RLEQLDLVP-ANRNAAGQIVAAGRLTALEKLAEDPPAKARV-RALGVAG-AFHTEFMAPA 221
Query: 178 APRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSA-EYHTNNLLSSVFFEEAS 236
L + ++ ++++L + G P+ ++A + + L V ++ +
Sbjct: 222 -------LDGFAAAAANIATADPTATLLSNRDGKPVTSAAAAMDTLVSQLTQPVRWDLCT 274
Query: 237 AHIPANAIC--IEIAPHGLLQAILKRSL 262
A + + + +E P G L I KR L
Sbjct: 275 ATLREHTVTAIVEFPPAGTLSGIAKREL 302
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
Query: 62 IVGHSVGELGCAYADGCFTAEQMILAAHARG----KASIETDTIDGKMAAIGLGYKQMKD 117
+ GHSVGE+ G A+ + A RG KA T G A +G ++
Sbjct: 88 VAGHSVGEIAAYAIAGVIAADDAVALAATRGAEMAKACATEPT--GMSAVLGGDETEVLS 145
Query: 118 MLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPA 177
L + A NA+ +G +E L E A+ RA+ VA A+H+ ++APA
Sbjct: 146 RLEQLDLVP-ANRNAAGQIVAAGRLTALEKLAEDPPAKARV-RALGVAG-AFHTEFMAPA 202
Query: 178 APRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSA-EYHTNNLLSSVFFEEAS 236
L + ++ ++++L + G P+ ++A + + L V ++ +
Sbjct: 203 -------LDGFAAAAANIATADPTATLLSNRDGKPVTSAAAAMDTLVSQLTQPVRWDLCT 255
Query: 237 AHIPANAIC--IEIAPHGLLQAILKRSL 262
A + + + +E P G L I KR L
Sbjct: 256 ATLREHTVTAIVEFPPAGTLSGIAKREL 283
>pdb|3C0B|A Chain A, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|B Chain B, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|C Chain C, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3C0B|D Chain D, Crystal Structure Of The Conserved Archaeal Protein
Q6m145. Northeast Structural Genomics Consortium Target
Mrr63
pdb|3CET|A Chain A, Crystal Structure Of The Pantheonate Kinase-Like Protein
Q6m145 At The Resolution 1.8 A. Northeast Structural
Genomics Consortium Target Mrr63
pdb|3CET|B Chain B, Crystal Structure Of The Pantheonate Kinase-Like Protein
Q6m145 At The Resolution 1.8 A. Northeast Structural
Genomics Consortium Target Mrr63
Length = 334
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 104 KMAAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVES 151
K+ GLG +KD LAD+ I +A D +L+ PS V L+++
Sbjct: 278 KVVITGLGENILKDALADFEVISVAERYGKD-VSLATPSFAVAELLKN 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,636,239
Number of Sequences: 62578
Number of extensions: 481719
Number of successful extensions: 1207
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 44
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)