Query psy11500
Match_columns 387
No_of_seqs 419 out of 2245
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:00:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00698 Acyl_transf_1: Acyl t 100.0 3.1E-61 6.7E-66 463.2 25.2 281 7-298 1-318 (318)
2 KOG1202|consensus 100.0 1E-60 2.2E-65 485.4 24.4 369 4-384 499-904 (2376)
3 TIGR02816 pfaB_fam PfaB family 100.0 1.9E-55 4.2E-60 440.5 27.7 290 3-305 180-537 (538)
4 TIGR02813 omega_3_PfaA polyket 100.0 2E-53 4.3E-58 484.6 33.0 297 3-305 578-925 (2582)
5 TIGR03131 malonate_mdcH malona 100.0 7.4E-52 1.6E-56 394.2 26.0 251 6-264 1-278 (295)
6 TIGR00128 fabD malonyl CoA-acy 100.0 2.1E-51 4.5E-56 390.1 27.4 252 5-263 2-288 (290)
7 COG3321 Polyketide synthase mo 100.0 4.5E-52 9.8E-57 448.6 22.9 367 5-386 526-938 (1061)
8 smart00827 PKS_AT Acyl transfe 100.0 2.3E-50 5E-55 384.4 29.0 258 10-274 1-296 (298)
9 PLN02752 [acyl-carrier protein 100.0 1.2E-50 2.7E-55 393.2 26.0 255 2-263 36-334 (343)
10 COG0331 FabD (acyl-carrier-pro 100.0 9.2E-51 2E-55 382.4 19.9 255 4-265 2-293 (310)
11 KOG2926|consensus 100.0 1.8E-39 3.8E-44 297.3 16.6 256 1-263 59-361 (386)
12 smart00826 PKS_DH PKS_DH. 95.9 0.0034 7.5E-08 53.2 1.4 33 353-385 23-56 (167)
13 cd07198 Patatin Patatin-like p 94.5 0.13 2.9E-06 44.6 7.1 48 41-88 9-56 (172)
14 cd07229 Pat_TGL3_like Triacylg 94.0 0.22 4.7E-06 49.1 8.1 49 40-89 93-141 (391)
15 PRK10279 hypothetical protein; 93.4 0.23 4.9E-06 47.4 6.9 37 42-78 17-54 (300)
16 cd07205 Pat_PNPLA6_PNPLA7_NTE1 93.0 0.28 6.1E-06 42.6 6.3 46 43-88 13-58 (175)
17 cd07207 Pat_ExoU_VipD_like Exo 92.7 0.36 7.8E-06 42.6 6.8 47 42-88 11-57 (194)
18 cd07209 Pat_hypo_Ecoli_Z1214_l 92.6 0.33 7.1E-06 43.9 6.4 40 41-80 9-48 (215)
19 COG1752 RssA Predicted esteras 92.2 0.38 8.2E-06 46.0 6.7 42 42-83 23-64 (306)
20 cd07210 Pat_hypo_W_succinogene 91.8 0.52 1.1E-05 42.9 6.7 48 41-88 11-58 (221)
21 cd07227 Pat_Fungal_NTE1 Fungal 91.3 0.6 1.3E-05 43.8 6.8 43 43-85 23-65 (269)
22 cd07225 Pat_PNPLA6_PNPLA7 Pata 91.0 0.69 1.5E-05 44.3 7.0 46 42-87 27-72 (306)
23 cd07228 Pat_NTE_like_bacteria 90.8 0.67 1.5E-05 40.3 6.3 43 42-84 12-54 (175)
24 cd07224 Pat_like Patatin-like 87.6 2.1 4.6E-05 39.1 7.3 51 40-90 9-61 (233)
25 cd07206 Pat_TGL3-4-5_SDP1 Tria 87.3 1.6 3.4E-05 41.5 6.3 37 41-77 80-116 (298)
26 cd07218 Pat_iPLA2 Calcium-inde 86.2 2.5 5.5E-05 39.0 7.0 47 41-87 11-59 (245)
27 cd07231 Pat_SDP1-like Sugar-De 86.0 2.6 5.5E-05 40.4 7.0 47 41-88 79-125 (323)
28 PRK11126 2-succinyl-6-hydroxy- 84.7 1.1 2.4E-05 40.4 3.9 31 48-78 56-86 (242)
29 cd07204 Pat_PNPLA_like Patatin 84.5 3.7 7.9E-05 37.9 7.2 49 41-89 10-62 (243)
30 cd07208 Pat_hypo_Ecoli_yjju_li 83.6 1.8 3.9E-05 40.4 4.9 38 43-80 11-50 (266)
31 cd07230 Pat_TGL4-5_like Triacy 83.3 3 6.6E-05 41.7 6.6 45 42-87 85-129 (421)
32 cd07221 Pat_PNPLA3 Patatin-lik 82.9 4.6 0.0001 37.5 7.2 49 41-89 11-63 (252)
33 cd07232 Pat_PLPL Patain-like p 82.5 3.4 7.4E-05 41.2 6.5 45 43-88 80-124 (407)
34 cd07220 Pat_PNPLA2 Patatin-lik 82.4 5 0.00011 37.2 7.2 48 41-88 15-66 (249)
35 TIGR03056 bchO_mg_che_rel puta 81.2 1.7 3.6E-05 39.9 3.7 30 47-76 84-113 (278)
36 cd07219 Pat_PNPLA1 Patatin-lik 79.8 6.1 0.00013 38.8 7.0 50 40-89 22-75 (382)
37 TIGR02240 PHA_depoly_arom poly 79.0 2.3 4.9E-05 39.5 3.8 29 48-76 81-109 (276)
38 PLN02824 hydrolase, alpha/beta 78.5 2.4 5.1E-05 39.8 3.8 31 46-76 90-120 (294)
39 TIGR02427 protocat_pcaD 3-oxoa 77.0 5.4 0.00012 35.2 5.6 31 48-78 69-99 (251)
40 PRK03592 haloalkane dehalogena 76.8 2.9 6.3E-05 39.2 3.9 29 48-76 83-111 (295)
41 PRK00870 haloalkane dehalogena 76.3 3 6.5E-05 39.3 3.8 29 48-76 105-133 (302)
42 PRK11071 esterase YqiA; Provis 75.8 3.5 7.6E-05 36.3 3.9 30 48-77 51-80 (190)
43 cd07222 Pat_PNPLA4 Patatin-lik 75.8 5.1 0.00011 37.0 5.1 37 41-77 10-50 (246)
44 cd07223 Pat_PNPLA5-mammals Pat 75.7 8.3 0.00018 37.9 6.6 51 40-90 19-73 (405)
45 PF12697 Abhydrolase_6: Alpha/ 75.3 3.9 8.3E-05 35.4 4.1 30 47-76 55-84 (228)
46 cd07212 Pat_PNPLA9 Patatin-lik 75.0 10 0.00022 36.4 7.1 47 44-90 13-64 (312)
47 KOG1454|consensus 74.2 7.9 0.00017 37.4 6.2 29 48-76 118-146 (326)
48 PRK08775 homoserine O-acetyltr 74.2 3.8 8.3E-05 39.6 4.0 29 48-76 127-156 (343)
49 PLN02965 Probable pheophorbida 72.2 3.9 8.4E-05 37.5 3.4 29 48-76 61-90 (255)
50 TIGR03343 biphenyl_bphD 2-hydr 70.8 4.4 9.5E-05 37.4 3.5 30 48-77 91-120 (282)
51 TIGR01392 homoserO_Ac_trn homo 70.7 5 0.00011 38.9 3.9 30 47-76 115-145 (351)
52 PLN02679 hydrolase, alpha/beta 70.5 4.8 0.0001 39.3 3.8 28 48-75 145-172 (360)
53 cd01819 Patatin_and_cPLA2 Pata 70.2 8.6 0.00019 32.7 4.9 34 43-76 11-46 (155)
54 cd07213 Pat17_PNPLA8_PNPLA9_li 69.9 12 0.00027 35.3 6.3 50 43-92 15-68 (288)
55 TIGR03101 hydr2_PEP hydrolase, 69.6 6.2 0.00013 36.9 4.1 29 48-76 89-117 (266)
56 PRK14875 acetoin dehydrogenase 68.3 11 0.00024 36.4 5.8 29 48-76 187-215 (371)
57 TIGR01250 pro_imino_pep_2 prol 68.0 5.7 0.00012 36.1 3.6 30 48-77 86-115 (288)
58 PRK10349 carboxylesterase BioH 67.7 6.5 0.00014 35.8 3.9 28 49-76 65-92 (256)
59 TIGR02813 omega_3_PfaA polyket 67.2 2.3 5.1E-05 51.8 0.9 33 354-386 2305-2338(2582)
60 PF12000 Glyco_trans_4_3: Gkyc 66.9 5.1 0.00011 34.9 2.7 19 49-67 57-75 (171)
61 PLN02578 hydrolase 66.7 6.4 0.00014 38.2 3.8 30 48-77 142-171 (354)
62 PRK07581 hypothetical protein; 66.6 6.5 0.00014 37.8 3.8 26 51-76 116-142 (339)
63 PRK13604 luxD acyl transferase 66.1 7.7 0.00017 37.1 4.0 30 48-77 98-127 (307)
64 PRK10673 acyl-CoA esterase; Pr 65.9 7.4 0.00016 35.2 3.9 30 48-77 71-100 (255)
65 cd07211 Pat_PNPLA8 Patatin-lik 65.8 20 0.00044 34.1 7.0 50 43-92 21-76 (308)
66 PRK00175 metX homoserine O-ace 65.5 7.5 0.00016 38.2 4.1 31 47-77 135-166 (379)
67 cd07217 Pat17_PNPLA8_PNPLA9_li 65.0 19 0.00042 35.0 6.7 38 56-93 39-76 (344)
68 PRK06765 homoserine O-acetyltr 63.8 8.9 0.00019 38.0 4.2 31 46-76 148-179 (389)
69 PF00561 Abhydrolase_1: alpha/ 63.8 9 0.0002 33.6 3.9 30 47-76 33-62 (230)
70 COG0596 MhpC Predicted hydrola 63.4 7.9 0.00017 33.8 3.5 30 47-76 77-106 (282)
71 TIGR03695 menH_SHCHC 2-succiny 62.3 11 0.00025 32.9 4.3 31 48-78 60-90 (251)
72 PLN02894 hydrolase, alpha/beta 61.3 10 0.00022 37.8 4.0 27 50-76 168-194 (402)
73 PRK11460 putative hydrolase; P 60.0 1.3E+02 0.0029 27.1 11.2 23 53-75 96-120 (232)
74 TIGR03611 RutD pyrimidine util 59.9 10 0.00023 33.7 3.6 30 48-77 70-99 (257)
75 TIGR03607 patatin-related prot 58.4 15 0.00032 39.5 4.8 73 5-77 3-85 (739)
76 PLN02211 methyl indole-3-aceta 56.5 13 0.00028 34.7 3.7 30 47-76 75-105 (273)
77 PF07819 PGAP1: PGAP1-like pro 56.5 16 0.00034 33.2 4.2 29 47-75 69-102 (225)
78 PRK06489 hypothetical protein; 55.4 13 0.00029 36.1 3.8 25 52-76 147-172 (360)
79 TIGR01738 bioH putative pimelo 55.1 15 0.00033 32.1 3.9 27 50-76 57-83 (245)
80 PLN02733 phosphatidylcholine-s 53.7 15 0.00032 37.1 3.8 30 48-77 152-181 (440)
81 PRK03204 haloalkane dehalogena 53.5 15 0.00032 34.4 3.7 29 48-76 91-119 (286)
82 TIGR01249 pro_imino_pep_1 prol 52.1 17 0.00037 34.3 3.9 30 48-77 85-114 (306)
83 PF01764 Lipase_3: Lipase (cla 51.0 21 0.00045 29.1 3.8 30 47-76 53-82 (140)
84 PF01734 Patatin: Patatin-like 49.0 15 0.00032 31.2 2.7 33 44-76 12-45 (204)
85 PF05728 UPF0227: Uncharacteri 47.0 25 0.00054 31.0 3.8 27 50-76 51-77 (187)
86 PF06821 Ser_hydrolase: Serine 46.8 15 0.00033 31.8 2.4 67 7-75 1-72 (171)
87 PLN03087 BODYGUARD 1 domain co 46.7 20 0.00044 36.6 3.5 27 50-76 266-292 (481)
88 KOG4409|consensus 46.3 21 0.00046 34.6 3.4 28 49-76 150-178 (365)
89 PF00756 Esterase: Putative es 45.8 23 0.0005 32.1 3.5 24 53-76 108-133 (251)
90 PRK10749 lysophospholipase L2; 45.8 23 0.0005 33.9 3.7 22 55-76 128-149 (330)
91 PRK10985 putative hydrolase; P 43.7 28 0.00062 33.2 4.0 22 53-74 126-147 (324)
92 cd07199 Pat17_PNPLA8_PNPLA9_li 43.0 91 0.002 28.7 7.1 34 59-92 35-69 (258)
93 cd00707 Pancreat_lipase_like P 42.5 24 0.00053 33.0 3.2 21 57-77 111-131 (275)
94 PF11288 DUF3089: Protein of u 42.3 25 0.00053 31.6 3.0 61 9-72 41-109 (207)
95 PF09752 DUF2048: Uncharacteri 42.1 1E+02 0.0023 30.0 7.4 32 46-77 163-194 (348)
96 TIGR03100 hydr1_PEP hydrolase, 42.0 32 0.00069 32.0 3.9 29 48-76 88-118 (274)
97 cd00519 Lipase_3 Lipase (class 41.6 29 0.00064 31.2 3.5 19 58-76 128-146 (229)
98 TIGR03230 lipo_lipase lipoprot 41.0 30 0.00065 34.9 3.7 21 56-76 117-137 (442)
99 PRK10566 esterase; Provisional 40.4 33 0.00072 30.9 3.7 27 50-76 96-125 (249)
100 PHA02857 monoglyceride lipase; 39.4 35 0.00076 31.3 3.8 23 54-76 93-115 (276)
101 PF06057 VirJ: Bacterial virul 39.1 1.2E+02 0.0027 26.8 6.8 76 4-82 2-92 (192)
102 PF05277 DUF726: Protein of un 38.8 33 0.00071 33.4 3.5 29 47-75 207-237 (345)
103 PF09383 NIL: NIL domain; Int 38.6 59 0.0013 23.6 4.2 25 137-161 51-75 (76)
104 PF05677 DUF818: Chlamydia CHL 38.6 75 0.0016 30.9 5.7 71 4-74 137-231 (365)
105 cd07216 Pat17_PNPLA8_PNPLA9_li 38.5 92 0.002 29.6 6.5 35 59-93 43-78 (309)
106 KOG2564|consensus 37.1 26 0.00057 33.0 2.4 21 57-77 145-165 (343)
107 PF00975 Thioesterase: Thioest 36.4 43 0.00093 29.7 3.7 28 49-76 56-84 (229)
108 PLN02385 hydrolase; alpha/beta 35.7 32 0.00069 33.2 2.9 19 58-76 162-180 (349)
109 TIGR01836 PHA_synth_III_C poly 33.9 49 0.0011 31.9 3.9 29 48-76 126-154 (350)
110 cd00741 Lipase Lipase. Lipase 33.5 54 0.0012 27.3 3.7 21 56-76 26-46 (153)
111 PF10230 DUF2305: Uncharacteri 33.2 28 0.0006 32.5 2.0 17 58-74 84-100 (266)
112 COG3892 Uncharacterized protei 32.5 51 0.0011 30.5 3.4 29 278-306 181-209 (310)
113 COG4188 Predicted dienelactone 32.5 39 0.00085 33.0 2.9 34 57-90 158-191 (365)
114 PLN02442 S-formylglutathione h 32.3 51 0.0011 30.9 3.6 26 51-76 136-161 (283)
115 PF00151 Lipase: Lipase; Inte 32.0 44 0.00096 32.3 3.2 24 54-77 144-169 (331)
116 PRK04940 hypothetical protein; 31.9 42 0.00092 29.4 2.7 20 57-76 59-78 (180)
117 PLN03084 alpha/beta hydrolase 31.4 58 0.0013 32.2 4.0 27 47-73 186-212 (383)
118 PF09968 DUF2202: Uncharacteri 31.3 42 0.00091 28.9 2.5 43 47-90 44-95 (162)
119 PF12695 Abhydrolase_5: Alpha/ 30.7 41 0.00088 27.1 2.4 22 56-77 59-80 (145)
120 PF03958 Secretin_N: Bacterial 30.5 78 0.0017 23.1 3.7 32 124-155 45-76 (82)
121 PLN02298 hydrolase, alpha/beta 30.5 60 0.0013 30.8 3.9 19 58-76 134-152 (330)
122 PF13117 Cag12: Cag pathogenic 30.3 1.1E+02 0.0023 24.7 4.6 36 124-159 72-107 (113)
123 PRK05855 short chain dehydroge 30.2 67 0.0015 33.0 4.4 32 47-78 82-114 (582)
124 PF06028 DUF915: Alpha/beta hy 29.7 59 0.0013 30.2 3.5 51 24-74 67-119 (255)
125 PF07977 FabA: FabA-like domai 29.6 24 0.00053 29.1 0.8 26 358-384 38-64 (138)
126 PLN02872 triacylglycerol lipas 29.1 98 0.0021 30.7 5.1 21 56-76 158-178 (395)
127 TIGR02821 fghA_ester_D S-formy 28.9 66 0.0014 29.9 3.7 28 49-76 126-156 (275)
128 PF09863 DUF2090: Uncharacteri 28.8 65 0.0014 30.6 3.6 27 279-305 191-217 (311)
129 COG3208 GrsT Predicted thioest 28.8 57 0.0012 30.0 3.1 15 58-72 74-88 (244)
130 PF02230 Abhydrolase_2: Phosph 28.7 3.8E+02 0.0083 23.5 8.6 116 48-186 93-213 (216)
131 COG4814 Uncharacterized protei 28.5 61 0.0013 30.1 3.2 33 42-74 120-152 (288)
132 PF05798 Phage_FRD3: Bacteriop 28.3 1.5E+02 0.0032 21.4 4.4 40 111-150 10-54 (75)
133 cd07214 Pat17_isozyme_like Pat 28.1 1.9E+02 0.0041 28.2 6.8 36 58-93 43-85 (349)
134 PF11187 DUF2974: Protein of u 27.2 45 0.00097 30.3 2.2 20 59-78 85-104 (224)
135 PRK10162 acetyl esterase; Prov 27.1 2.2E+02 0.0049 27.0 7.2 26 51-76 145-172 (318)
136 TIGR01840 esterase_phb esteras 26.9 98 0.0021 27.3 4.4 25 52-76 87-113 (212)
137 PLN02980 2-oxoglutarate decarb 26.5 64 0.0014 38.4 3.8 29 48-76 1435-1463(1655)
138 PF03808 Glyco_tran_WecB: Glyc 25.7 3.4E+02 0.0073 23.3 7.4 58 102-164 48-109 (172)
139 PF03959 FSH1: Serine hydrolas 24.7 88 0.0019 27.9 3.6 28 48-76 93-120 (212)
140 COG0400 Predicted esterase [Ge 24.7 1.9E+02 0.0041 25.9 5.7 31 46-76 85-117 (207)
141 PF00326 Peptidase_S9: Prolyl 24.6 71 0.0015 28.1 3.0 32 46-77 49-83 (213)
142 COG3946 VirJ Type IV secretory 24.2 1.4E+02 0.0031 29.7 5.0 62 4-70 260-338 (456)
143 cd00954 NAL N-Acetylneuraminic 23.6 1.7E+02 0.0038 27.4 5.6 26 46-72 24-50 (288)
144 PF00403 HMA: Heavy-metal-asso 23.5 2.5E+02 0.0053 19.1 5.4 46 112-157 13-61 (62)
145 TIGR00674 dapA dihydrodipicoli 23.2 1.3E+02 0.0029 28.1 4.7 25 47-72 23-47 (285)
146 PLN02652 hydrolase; alpha/beta 23.1 1.2E+02 0.0025 30.1 4.5 20 57-76 207-226 (395)
147 COG2267 PldB Lysophospholipase 22.7 63 0.0014 30.7 2.3 20 56-75 105-124 (298)
148 PRK05077 frsA fermentation/res 22.7 92 0.002 31.1 3.7 31 46-76 250-283 (414)
149 KOG2968|consensus 22.2 82 0.0018 34.5 3.2 36 41-76 850-885 (1158)
150 PF09419 PGP_phosphatase: Mito 22.1 1.2E+02 0.0026 26.3 3.7 56 151-207 35-90 (168)
151 KOG1553|consensus 21.9 1.1E+02 0.0024 29.8 3.7 48 40-91 295-354 (517)
152 PLN00215 predicted protein; Pr 21.6 36 0.00077 25.4 0.3 14 6-19 54-67 (110)
153 PLN02454 triacylglycerol lipas 21.4 1.4E+02 0.0029 29.9 4.4 28 49-76 217-246 (414)
154 KOG3847|consensus 21.2 38 0.00082 32.5 0.5 18 61-78 244-261 (399)
155 PF06259 Abhydrolase_8: Alpha/ 21.0 61 0.0013 28.3 1.7 17 60-76 111-127 (177)
156 cd02394 vigilin_like_KH K homo 20.9 1.2E+02 0.0025 20.9 2.9 21 132-152 41-61 (62)
157 CHL00050 rps19 ribosomal prote 20.8 19 0.00042 27.8 -1.2 15 57-72 62-76 (92)
158 cd07215 Pat17_PNPLA8_PNPLA9_li 20.5 1.6E+02 0.0035 28.2 4.8 36 58-93 40-82 (329)
159 KOG2214|consensus 20.5 96 0.0021 31.7 3.1 39 43-82 187-225 (543)
160 PLN02511 hydrolase 20.4 1.3E+02 0.0029 29.6 4.2 22 55-76 170-191 (388)
161 PRK04147 N-acetylneuraminate l 20.1 2.4E+02 0.0053 26.5 5.8 26 46-72 27-53 (293)
No 1
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=100.00 E-value=3.1e-61 Score=463.17 Aligned_cols=281 Identities=29% Similarity=0.404 Sum_probs=243.3
Q ss_pred EEEEcCCCcCcccCc------------------------CCchhHHhhcCCCC--------cchhHHHHHHHHHHHHHHH
Q psy11500 7 EVVISGVGGVFPECH------------------------SFHEFRELLFSGKS--------GVTVDNRRWPIGLVDILFA 54 (387)
Q Consensus 7 ~f~F~GqGsq~~~m~------------------------~~~~l~~~l~~~~~--------~~q~ai~a~q~al~~ll~~ 54 (387)
+|||||||+||++|. ...++.+.+++++. ..||+||++|+|++++|++
T Consensus 1 vFlFpGQGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~~al~~~l~~ 80 (318)
T PF00698_consen 1 VFLFPGQGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQVALARLLRS 80 (318)
T ss_dssp EEEE--TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEECCcchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhhhhhhhhhcc
Confidence 699999999999991 13456666666553 1399999999999999999
Q ss_pred cCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCCCCceEEEEeCCHHHHHHhhcCCCCEEEEEeeCCC
Q psy11500 55 LGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLGYKQMKDMLADYPTIEIACHNASD 134 (387)
Q Consensus 55 ~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~~~g~M~av~~~~~~~~~~l~~~~~v~iA~~Nsp~ 134 (387)
+||+||+++|||+|||+|+|+||++|++||+++++.|+++|.+.. ..|+|++|.. ++.+..+...++++|||+|+|+
T Consensus 81 ~Gi~P~~v~GhSlGE~aA~~aaG~ls~e~a~~lv~~R~~~m~~~~-~~g~m~av~~--~~~~~~~~~~~~v~ia~~Ns~~ 157 (318)
T PF00698_consen 81 WGIKPDAVIGHSLGEYAALVAAGALSLEDALRLVYERARLMDEAA-PPGAMLAVRG--EEEEEKLALPPDVEIANINSPR 157 (318)
T ss_dssp TTHCESEEEESTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHS-TSEEEEEEES--HHHHHHHHTTTTEEEEEEEETT
T ss_pred cccccceeeccchhhHHHHHHCCccchhhhhhhHHHHHHHHHHhh-hcccccchhh--hHHhhhccccccceeeeecccc
Confidence 999999999999999999999999999999999999999998754 8899999988 3333344455689999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhCCceEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEecccccccCCCCcc
Q psy11500 135 SCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLA 214 (387)
Q Consensus 135 ~~visG~~~~l~~l~~~l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~~~~~~~~ 214 (387)
++||||+.++|+++.+.|+++|+++++|++ ++|||||+|+++.++|++.++.+.+.+ |++|++|+++|... ..
T Consensus 158 q~visG~~~~l~~~~~~l~~~~~~~~~l~v-~~afHs~~m~~~~~~~~~~l~~~~~~~--p~ip~~S~~~g~~~----~~ 230 (318)
T PF00698_consen 158 QVVISGEREALEALVERLKAEGIKAKRLPV-SYAFHSPLMEPAADEFREALESIEFRP--PKIPVYSNVTGRPY----DD 230 (318)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTSEEEEESS-SSETTSGGGHHHHHHHHHHHHTSCSCC--CSSEEEETTTSSBE----HS
T ss_pred ccccCCCHHHHHHHHHHhhccceeEEEeee-eccccCchhhhhHHHHHhhhhcccccc--ccccceeecccccc----cc
Confidence 999999999999999999999999999999 999999999999999999999988776 89999999998764 12
Q ss_pred CCCCHHHHHHhcccceehHHHHhhccCCC--eEEEECCChhHHHHHHHHhC---CCCceeeecccCCCCChHHHHHHHHH
Q psy11500 215 QTSSAEYHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLA---EKEVVNIPLTLRGVKDGVKFILNSIG 289 (387)
Q Consensus 215 ~~~~~~y~~~~l~~pV~f~~ai~~l~~~~--~~vEiGP~~~L~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~l~~~l~ 289 (387)
...+++||++|+++||+|.++++.+.+.+ +||||||+++|+++++++++ .....+++++.|+ .++..+++++++
T Consensus 231 ~~~~~~~~~~~l~~pV~f~~~v~~l~~~g~~~fiEiGP~~~L~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~ 309 (318)
T PF00698_consen 231 PELIAEYWARQLRSPVRFREAVEALYEDGVRVFIEIGPGSVLTSLVKRILKSENGSDATLIPSLRRG-HDDLDTFLQALA 309 (318)
T ss_dssp HHHHHHHHHHHHHSHEEHHHHHHHHHHTTEEEEEEESSSSHHHHHHHHHSTSETTTTSEEEESEBTT-BSCHHHHHHHHH
T ss_pred cccchhHHHhccCCcCChHHHHHHHHhcCCCEEEEeCchHHHHHHHHHHHhhccCCCeEEEeccCCC-CChHHHHHHHHH
Confidence 22358999999999999999999997765 69999999999999999998 3467889999886 788999999999
Q ss_pred HHHHcCCCC
Q psy11500 290 KLYLNGLDL 298 (387)
Q Consensus 290 ~L~~~G~~v 298 (387)
+||++|++|
T Consensus 310 ~l~~~Gv~~ 318 (318)
T PF00698_consen 310 QLFVSGVAV 318 (318)
T ss_dssp HHHHTT-HH
T ss_pred HHHHcCCCC
Confidence 999999753
No 2
>KOG1202|consensus
Probab=100.00 E-value=1e-60 Score=485.36 Aligned_cols=369 Identities=44% Similarity=0.734 Sum_probs=333.1
Q ss_pred CcEEEEEcCCCcCcccCc----CC------------------chhHHhhcCCCCc-------chhHHHHHHHHHHHHHHH
Q psy11500 4 EKYEVVISGVGGVFPECH----SF------------------HEFRELLFSGKSG-------VTVDNRRWPIGLVDILFA 54 (387)
Q Consensus 4 ~~v~f~F~GqGsq~~~m~----~~------------------~~l~~~l~~~~~~-------~q~ai~a~q~al~~ll~~ 54 (387)
+.|-|+++|.||||++|. .. .++.+++...++. .-.+|.|+|+||.++|..
T Consensus 499 RPiwfiysGMGsQW~~Ma~~LMkl~~F~dsi~~~ae~l~~~gldv~~vL~~s~~~tfdn~l~sfvsitAiQiaLtDlLs~ 578 (2376)
T KOG1202|consen 499 RPIWFIYSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVSITAIQIALTDLLSC 578 (2376)
T ss_pred cceEEEEeCCcchhhHHHHHHhhhHHHHHHHHHHHhhhcccCcchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999992 12 2333444333332 146899999999999999
Q ss_pred cCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCCCCceEEEEeCCHHHHHHhhcCCCCEEEEEeeCCC
Q psy11500 55 LGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLGYKQMKDMLADYPTIEIACHNASD 134 (387)
Q Consensus 55 ~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~~~g~M~av~~~~~~~~~~l~~~~~v~iA~~Nsp~ 134 (387)
.||+||.++|||+||+.++|+.|++|.|+++.++|+||+.+.+..-.+|+|+|||++.|++.+.+.. +++-+|.||.+
T Consensus 579 lgi~PDGIvGHS~GElgc~YaDGclt~EqtvlaAYwRG~sild~~l~kGaMAAVGLsWEq~~~~~P~--~~~paCHNs~D 656 (2376)
T KOG1202|consen 579 LGIRPDGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSILDTHLPKGAMAAVGLSWEQCKSRCPP--DVVPACHNSKD 656 (2376)
T ss_pred cCCCCCcccccccchhcccccccccCHHHHHHHHHHcCceeccccCCCcchhhhcCCHHHHhccCCC--cccccccCCCC
Confidence 9999999999999999999999999999999999999999888788899999999999999988876 89999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhCCceEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEecccccccCCCCcc
Q psy11500 135 SCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLA 214 (387)
Q Consensus 135 ~~visG~~~~l~~l~~~l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~~~~~~~~ 214 (387)
+|||||+.+.+.++.+.|+++|||++.++...+|||||+|+.+.+++++.++++.+.++..+.+|+|++.....|.++..
T Consensus 657 ~~TiSGp~a~v~~~v~qL~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~epK~rsarWlSTSipEa~W~s~la 736 (2376)
T KOG1202|consen 657 NVTISGPQASVFAFVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPEPKPRSARWLSTSIPEAQWHSSLA 736 (2376)
T ss_pred ceEecCChHHHHHHHHHhhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcCCCCCcccchhhccCChhhhcChhh
Confidence 99999999999999999999999999999989999999999999999999999999998889999999999888988888
Q ss_pred CCCCHHHHHHhcccceehHHHHhhccCCCeEEEECCChhHHHHHHHHhCCCCceeeecccCCCCChHHHHHHHHHHHHHc
Q psy11500 215 QTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLN 294 (387)
Q Consensus 215 ~~~~~~y~~~~l~~pV~f~~ai~~l~~~~~~vEiGP~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~ 294 (387)
...+++|.+.|+.+||.|.+|++.+.++.+.|||.||..+...+|+.++.. .++++.+.|+..+..+.|+..+++||.+
T Consensus 737 ~tsSA~Y~vnNl~SPVLF~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL~p~-~t~v~Lmkr~h~~NlEffL~~lgrly~a 815 (2376)
T KOG1202|consen 737 RTSSAEYHVNNLVSPVLFHEALQHVPENAVVVEIAPHGLLQAILKRSLKPS-CTNVSLMKRGHRNNLEFFLAGLGRLYAA 815 (2376)
T ss_pred hhcchhhhhhccccHHHHHHHHHhCcccceEEEecchHHHHHHHHhhcCCc-cceehhhcCcccccHHHHHHHHHHHHHc
Confidence 888999999999999999999999999999999999999999999999865 8999999999889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhcccC-------CCCccccccccccccccccCCccCC
Q psy11500 295 GLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQIKSY-------PADEEFAGLFHEVYKTNVNRHTLRG 367 (387)
Q Consensus 295 G~~v~~~~~~~~~~~~~~~~~~~~lP~y~~~~~~~W~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~~l~~H~v~g 367 (387)
|.+++...++|+.+||+.|++|+.-|..-|||+.-|..+.+.....++ +..++- .||.||.++|
T Consensus 816 G~~~qi~~l~p~i~ypv~rGTPmi~~lv~WDHtq~W~~~~f~~gs~s~~a~~niD~~~edd---------~yL~~HtiDG 886 (2376)
T KOG1202|consen 816 GIQPQILALFPPIEYPVPRGTPMIGPLVKWDHTQKWLVPKFPGGSGSSAAIYNIDLSKEDD---------HYLADHTIDG 886 (2376)
T ss_pred cCCccceeccCCCcccCCCCCcCcccccCccccccccccccCCCCCccceEEEccCCcccc---------ceeccceecc
Confidence 999999999999999999999999999999999999988665443333 222232 3999999999
Q ss_pred eeeehhccchH-HHhhcc
Q psy11500 368 YVLTPDTSAQD-ETENLE 384 (387)
Q Consensus 368 ~~l~Paa~~~e-a~~A~~ 384 (387)
+++||++||+. |...+-
T Consensus 887 RvLfPaTGymtlaW~tla 904 (2376)
T KOG1202|consen 887 RVLFPATGYMTLAWKTLA 904 (2376)
T ss_pred eEEeccccchhHHHHHHh
Confidence 99999999999 776543
No 3
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=100.00 E-value=1.9e-55 Score=440.48 Aligned_cols=290 Identities=18% Similarity=0.249 Sum_probs=241.7
Q ss_pred CCcEEEEEcCCCcCcccC-----cCCchh----------HHhhcCCC------------CcchhHHHH--HHHHHHHHH-
Q psy11500 3 GEKYEVVISGVGGVFPEC-----HSFHEF----------RELLFSGK------------SGVTVDNRR--WPIGLVDIL- 52 (387)
Q Consensus 3 ~~~v~f~F~GqGsq~~~m-----~~~~~l----------~~~l~~~~------------~~~q~ai~a--~q~al~~ll- 52 (387)
.+|++|||||||+||++| ..++.| .+.++.+. ...|+++|+ +||+|+++|
T Consensus 180 ~~~vaFvFpGqGsqy~gMGr~L~~~~P~fr~~ld~~~~L~~~L~~~~~~~~~~~~~~~~~l~q~alfav~~~~aLa~ll~ 259 (538)
T TIGR02816 180 KAGLAFVYPGVGTVYADMFNDFHQYFPALFAKLEREGDLKAMLQAEDIYGEDPKHAAEMSLGDLAIAGVGSSYLLTQLLC 259 (538)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhhCHHHHHHHHhcCCHHHHhccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 358999999999999999 334444 44443211 113788885 599999999
Q ss_pred HHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCC------------------CCceEEEEeCCHHH
Q psy11500 53 FALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDT------------------IDGKMAAIGLGYKQ 114 (387)
Q Consensus 53 ~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~------------------~~g~M~av~~~~~~ 114 (387)
++|||+|++++|||+|||+|+|+||+|+++|++.++..|+++|+...+ ..+.|++|+++.++
T Consensus 260 ~~~GI~Pdav~GHSlGE~aAa~aAGvls~~dal~~v~~rs~L~~~~~rG~mmavr~a~~~~~~~~~~~~~~avV~a~~~~ 339 (538)
T TIGR02816 260 DEFAIKPDFALGYSKGEASMWASLGVWKNPHALIEKTQTDPIFTSAISGKLTAVREAWQLDDTAAEIQWNSFVVRCEAAP 339 (538)
T ss_pred HhcCCCCCEEeecCHHHHHHHHHhCCCCcHHHHHHHHHhhHHhccccChhhhhhhhhhccccccccccccceeecCCHHH
Confidence 589999999999999999999999999999999999999988864211 12446678999999
Q ss_pred HHHhhcCCCCEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhCCceEEEcccCCcC-----CcccchhhHHHHHHHHHhhcC
Q psy11500 115 MKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIA-----YHSRYIAPAAPRLLQYLKKVI 189 (387)
Q Consensus 115 ~~~~l~~~~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~gi~~~~L~v~~~a-----fHS~~m~~~~~~~~~~l~~~~ 189 (387)
++++|.++++++||++|+ .++||||+.++|+++.+.|+++|+++++|.+ .|+ |||++|+++.++|.+.+
T Consensus 340 V~~~L~~~~~V~IAaiN~-~q~VISG~~~Ai~~l~~~L~~~Gi~~r~L~a-~HA~pam~~HS~~me~~l~~f~~~l---- 413 (538)
T TIGR02816 340 IEALLKDFPHAYLAIIQG-DTCVIAGCEAQCKALLAALGKRGIAANRVTA-MHTQPALQEHQNVMDFYLQPLCAEL---- 413 (538)
T ss_pred HHHHhccCCCeEEEEeCC-CCeEeeCCHHHHHHHHHHHHhCCeeeeeccc-cccCcccccccHHHHHHHHHHHhhc----
Confidence 999999888899999998 7999999999999999999999999999999 888 99999999999998765
Q ss_pred CCCCCCCceEEeccc--cccc---CCCCccCCCCHHHHHHhcccceehHHHHhhccCCC--eEEEECCChhHHHHHHHHh
Q psy11500 190 PSPKPRSSKWISSSI--LEDA---WGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSL 262 (387)
Q Consensus 190 ~~~~~~~~~~~s~~~--g~~~---~~~~~~~~~~~~y~~~~l~~pV~f~~ai~~l~~~~--~~vEiGP~~~L~~~~~~~l 262 (387)
+ |.+|++|+++ |... ...+.. ..++||.+|+++||+|.++++.+.+++ +||||||+++|++++++++
T Consensus 414 --~--p~ip~iSnvt~tG~~~~~~~~~d~~--~ia~yw~~ql~~PVrF~~~I~~L~~~Gv~~FVEIGPg~vLs~lv~~~l 487 (538)
T TIGR02816 414 --P--MDIKFISAADLLAKNQNSEQAIDSQ--SIANSIADTFCQTLDFTALIHHAQEQGAKLFVEIGADRQNCTLIDKIN 487 (538)
T ss_pred --c--cCCeeeecccccCcccCCCcCCCHH--HHHHHHHHcCCCccCHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHh
Confidence 2 6899999984 3311 000111 237899999999999999999999886 6999999999999999998
Q ss_pred CCCC--------ceeeecccCCCCChHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy11500 263 AEKE--------VVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP 305 (387)
Q Consensus 263 ~~~~--------~~~~~~~~~~~~~~~~~l~~~l~~L~~~G~~v~~~~~~~ 305 (387)
+..+ ..++++++|+ .++..++++++++||++|++|||..+++
T Consensus 488 ~~~~~~~~~~~~~~~l~sl~r~-~~d~~~ll~aLA~L~~~Gv~vdW~~l~~ 537 (538)
T TIGR02816 488 KQDGASSEQHQPCCTVAANAKG-GEDITSLIKAIAQLISHQIPLSLQPFID 537 (538)
T ss_pred hcccccccccccceEeccCCCC-CchHHHHHHHHHHHHHCCCCCCchhcCC
Confidence 6431 3577888775 6889999999999999999999998875
No 4
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=100.00 E-value=2e-53 Score=484.58 Aligned_cols=297 Identities=21% Similarity=0.288 Sum_probs=253.4
Q ss_pred CCcEEEEEcCCCcCcccCc-----CCc-------------------hhHHhhc-----C------------CCCcchhHH
Q psy11500 3 GEKYEVVISGVGGVFPECH-----SFH-------------------EFRELLF-----S------------GKSGVTVDN 41 (387)
Q Consensus 3 ~~~v~f~F~GqGsq~~~m~-----~~~-------------------~l~~~l~-----~------------~~~~~q~ai 41 (387)
.+|++|+|||||+||++|. .++ ++.++++ + .....||+|
T Consensus 578 ~~kvaflFpGQGSQy~gMgreL~~~~P~fr~~ld~~d~~l~~~~~~~L~~~l~p~~~~~~~~~~~~~~~L~~t~~aQPaI 657 (2582)
T TIGR02813 578 SGKVAALFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQEEALTNTQHAQSAI 657 (2582)
T ss_pred CCceEEEeCCCCchhHHHHHHHHhcCHHHHHHHHHHHHHhhhhcCCcHHHHhccccccccccccchhhhhccchhHHHHH
Confidence 3589999999999999992 222 2333332 1 111249999
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCC--CCceEEEEeCC----HHHH
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDT--IDGKMAAIGLG----YKQM 115 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~--~~g~M~av~~~----~~~~ 115 (387)
|++|++++++|++|||+|++|+|||+|||+|+|+||+||++|++++++.||++|.+... ..|.|++|.++ .+.+
T Consensus 658 ~a~q~Al~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAGvls~edal~Lv~~Rg~lm~~~~~~~~~G~M~AV~l~~~~~~~~v 737 (2582)
T TIGR02813 658 GTLSMGQYKLFTQAGFKADMTAGHSFGELSALCAAGVISDDDYMMLAFSRGQAMAAPTGEADIGFMYAVILAVVGSPTVI 737 (2582)
T ss_pred HHHHHHHHHHHHHcCCccceeecCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCCceeEEEEccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999987532 46999998653 5678
Q ss_pred HHhhcCCCCEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhCCceEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCC
Q psy11500 116 KDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPR 195 (387)
Q Consensus 116 ~~~l~~~~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~ 195 (387)
++.+..+++|+|||+|||+|+||||+.++|+++.+.|+++|+++++|+| ++||||++|+++.++|++.++++.++. |
T Consensus 738 ~~~l~~~~~V~IA~~NsP~qvVISG~~~ai~~l~~~L~~~Gi~a~~L~V-s~AFHSplm~~a~~~f~~~L~~i~~~~--P 814 (2582)
T TIGR02813 738 ANCIKDFEGVSIANYNSPTQLVIAGVSTQIQIAAKALKEKGFKAIPLPV-SGAFHTPLVAHAQKPFSAAIDKAKFNT--P 814 (2582)
T ss_pred HHHhccCCCEEEEEEecCCCEEEECCHHHHHHHHHHHHhCCCeEEECCC-CCCcCcHHHHHHHHHHHHHHhhCCCCC--C
Confidence 8888877789999999999999999999999999999999999999999 999999999999999999999998876 8
Q ss_pred CceEEecccccccCCCCccCCCCHHHHHHhcccceehHHHHhhccCCC--eEEEECCChhHHHHHHHHhCCC--Cceeee
Q psy11500 196 SSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLAEK--EVVNIP 271 (387)
Q Consensus 196 ~~~~~s~~~g~~~~~~~~~~~~~~~y~~~~l~~pV~f~~ai~~l~~~~--~~vEiGP~~~L~~~~~~~l~~~--~~~~~~ 271 (387)
.+|++||++|..... +... .++||.+|+++||+|.++|+.+.+++ +|||+|||++|++++++++++. ...+++
T Consensus 815 ~ipv~SnvtG~~~~~-~~~~--i~~~~~~ql~~PV~F~~aIe~l~~~G~~~FVEiGPg~vLt~lv~~il~~~~~~~~~v~ 891 (2582)
T TIGR02813 815 LVPLYSNGTGKLHSN-DAAA--IKKALKNHMLQSVHFSEQLEAMYAAGARVFVEFGPKNILQKLVENTLKDKENELCAIS 891 (2582)
T ss_pred CceEEECCCCeEecC-chhh--HHHHHHHHhhCeecHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHHhhccCCCeeEEe
Confidence 899999999976421 1122 37999999999999999999998775 6999999999999999999754 233555
Q ss_pred cccCCCCChHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy11500 272 LTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP 305 (387)
Q Consensus 272 ~~~~~~~~~~~~l~~~l~~L~~~G~~v~~~~~~~ 305 (387)
+..+.+.++..+|++++++||++|+++||...+.
T Consensus 892 ~~~~~~~~~~~~l~~a~~~L~~~G~~v~~~~~~~ 925 (2582)
T TIGR02813 892 INPNPKGDSDMQLRQAAVQLAVLGLELTEIDPYQ 925 (2582)
T ss_pred eccCCCCCHHHHHHHHHHHHHHCCCCCCCccccc
Confidence 5534346788899999999999999999877653
No 5
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=100.00 E-value=7.4e-52 Score=394.19 Aligned_cols=251 Identities=19% Similarity=0.224 Sum_probs=218.9
Q ss_pred EEEEEcCCCcCcccCcC----CchhHHhhc-------------------CCCCcchhHHHHHHHHHHHHHHHcCCCCCEE
Q psy11500 6 YEVVISGVGGVFPECHS----FHEFRELLF-------------------SGKSGVTVDNRRWPIGLVDILFALGITPDGI 62 (387)
Q Consensus 6 v~f~F~GqGsq~~~m~~----~~~l~~~l~-------------------~~~~~~q~ai~a~q~al~~ll~~~Gi~P~~v 62 (387)
++|+|||||+||++|.. ++.+++.+. .++...||++|++|+|++++|+++|++|+++
T Consensus 1 ~~~~F~GqG~q~~~m~~~l~~~p~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~qp~i~~~q~al~~~l~~~g~~P~~v 80 (295)
T TIGR03131 1 IALLFPGQGSQRAGMLAELPDHPAVAAVLAEASDVLGIDPRELDDAEALASTRSAQLCILAAGVAAWRALLALLPRPSAV 80 (295)
T ss_pred CEEEECCcchhhhhHHHHHHhCHHHHHHHHHHHHHhCcCHHHcCCHhhhccchhhhHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 58999999999999922 222332221 1223359999999999999999999999999
Q ss_pred EecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCCCCceEEEE-eCCHHHHHHhhcCCCCEEEEEeeCCCcEEEeCC
Q psy11500 63 VGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAI-GLGYKQMKDMLADYPTIEIACHNASDSCTLSGP 141 (387)
Q Consensus 63 ~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~~~g~M~av-~~~~~~~~~~l~~~~~v~iA~~Nsp~~~visG~ 141 (387)
+|||+|||+|+|+||++|++|++++++.|+++|++.....++|++| +++.+++++++.++ +++|||+|+|+++||||+
T Consensus 81 ~GhS~GE~aAa~~aG~~s~e~a~~lv~~r~~~~~~~~~~~~~m~av~~~~~~~~~~~l~~~-~v~ia~~Nsp~~~visG~ 159 (295)
T TIGR03131 81 AGYSVGEYAAAVVAGVLTFDDALRLVALRAALMDQAVPGGYGMLAVLGLDLAAVEALIAKH-GVYLAIINAPDQVVIAGS 159 (295)
T ss_pred eecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCHHHHHHHHHHc-CEEEEEEcCCCCEEEECC
Confidence 9999999999999999999999999999999998654445677666 89999999999876 599999999999999999
Q ss_pred HHHHHHHHHHHHhCCc-eEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEecccccccCCCCccCCCCHH
Q psy11500 142 SADVEALVESLVAQGI-FARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAE 220 (387)
Q Consensus 142 ~~~l~~l~~~l~~~gi-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 220 (387)
+++++++.+.++++|+ ++++|++ ++||||++|+++.++|.+.++.+.+.+ +.+|++|+++|... ..... .++
T Consensus 160 ~~~l~~l~~~l~~~g~~~~~~l~v-~~afHs~~~~~~~~~~~~~l~~~~~~~--~~ip~~S~~~g~~~--~~~~~--~~~ 232 (295)
T TIGR03131 160 RAALRAVAELARAAGASRAKRLAV-RVPSHTPLLAKAAEQFAEALAEIPLAA--PRLPYLSGIDARLV--RDAAQ--IRD 232 (295)
T ss_pred HHHHHHHHHHHHhcCCceEEECCC-CCCcccHHHHHHHHHHHHHHhcCCCCC--CCceEEECCCCeec--CCHHH--HHH
Confidence 9999999999999999 9999999 999999999999999999999987765 88999999998754 12222 389
Q ss_pred HHHHhcccceehHHHHhhccCCC--eEEEECCChhHHHHHHHHhCC
Q psy11500 221 YHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLAE 264 (387)
Q Consensus 221 y~~~~l~~pV~f~~ai~~l~~~~--~~vEiGP~~~L~~~~~~~l~~ 264 (387)
||.+|+++||+|.++++.+.+.+ +|||+||+++|++++++++++
T Consensus 233 ~~~~~l~~pV~~~~~i~~l~~~g~~~~veiGp~~~l~~~~~~~~~~ 278 (295)
T TIGR03131 233 DLARQIATPVDWHDCMQAAYERGARLVIELGPGDVLTKLANEAFPE 278 (295)
T ss_pred HHHHHhcCCCcHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHhcCC
Confidence 99999999999999999998764 799999999999999998765
No 6
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=100.00 E-value=2.1e-51 Score=390.07 Aligned_cols=252 Identities=23% Similarity=0.273 Sum_probs=221.3
Q ss_pred cEEEEEcCCCcCcccCc-----CCc---------------hhHHhhcCC-------CCcchhHHHHHHHHHHHHHHHcC-
Q psy11500 5 KYEVVISGVGGVFPECH-----SFH---------------EFRELLFSG-------KSGVTVDNRRWPIGLVDILFALG- 56 (387)
Q Consensus 5 ~v~f~F~GqGsq~~~m~-----~~~---------------~l~~~l~~~-------~~~~q~ai~a~q~al~~ll~~~G- 56 (387)
|++|+|||||+||++|. .++ ++.+.++++ +...||++|++|||++++|+++|
T Consensus 2 ~~~~~f~Gqg~~~~~m~~~l~~~~p~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~q~~i~~~~~al~~~l~~~g~ 81 (290)
T TIGR00128 2 KIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALGYDLKKLCQEGPAEELNKTQYTQPALYVVSAILYLKLKEQGG 81 (290)
T ss_pred CEEEEECCCCcchhhhHHHHHHcCHHHHHHHHHHHHHhCcCHHHHHhCCCHHHhccccchhHHHHHHHHHHHHHHHHcCC
Confidence 59999999999999992 222 344555432 23359999999999999999999
Q ss_pred CCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhccc-CCCCceEEEE-eCCHHHHHHhhcCCC--CEEEEEeeC
Q psy11500 57 ITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAI-GLGYKQMKDMLADYP--TIEIACHNA 132 (387)
Q Consensus 57 i~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~-~~~~g~M~av-~~~~~~~~~~l~~~~--~v~iA~~Ns 132 (387)
|+|++++|||+|||+|+|+||++|+||++++++.||++|++. ..+.|.|+++ +.+.+++++.+++++ .+.|+|+|+
T Consensus 82 i~p~~v~GhS~GE~aAa~~aG~ls~eda~~lv~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~~l~~~~~~~v~ia~~ns 161 (290)
T TIGR00128 82 LKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATENDVDLANFNS 161 (290)
T ss_pred CCCCEEeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEeCCCHHHHHHHHHhcCCCcEEEEEECC
Confidence 999999999999999999999999999999999999999875 3457899988 899999999998764 499999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhCCc-eEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEecccccccCCC
Q psy11500 133 SDSCTLSGPSADVEALVESLVAQGI-FARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGS 211 (387)
Q Consensus 133 p~~~visG~~~~l~~l~~~l~~~gi-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~~~~~ 211 (387)
|+++||||+++.++++.+.++..++ ++++|++ ++||||++|+++.+++.+.+..+.+.+ |.+|++|+.+|....
T Consensus 162 p~~~visG~~~~l~~l~~~l~~~~~~~~~~L~v-~~~fHs~~l~~~~~~~~~~l~~~~~~~--p~ipi~S~~~g~~~~-- 236 (290)
T TIGR00128 162 PGQVVISGTKDGVEAAAALFKEMGAKRAVPLEV-SGAFHSRFMKPAAEKFAETLEACQFND--PTVPVISNVDAKPYT-- 236 (290)
T ss_pred CCCEEEECCHHHHHHHHHHHHHcCCCeEEEcCC-CCCcccHHHHHHHHHHHHHHHcCCCCC--CCccEEECCCCCccC--
Confidence 9999999999999999999999887 6899999 999999999999999999999988876 899999999987541
Q ss_pred CccCCCCHHHHHHhcccceehHHHHhhccCC--CeEEEECCChhHHHHHHHHhC
Q psy11500 212 PLAQTSSAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLA 263 (387)
Q Consensus 212 ~~~~~~~~~y~~~~l~~pV~f~~ai~~l~~~--~~~vEiGP~~~L~~~~~~~l~ 263 (387)
.... .++||.+|+++||+|.++++.+.++ .+|||+||+++|+++++++.+
T Consensus 237 ~~~~--~~~~~~~~l~~pV~f~~~i~~l~~~g~~~~ie~gp~~~l~~~~~~~~~ 288 (290)
T TIGR00128 237 NGDR--IKEKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTGLIKRIKN 288 (290)
T ss_pred CHHH--HHHHHHHHccCCccHHHHHHHHHHCCCCEEEEECCchHHHHHHHHhcC
Confidence 1122 3899999999999999999999876 479999999999999998764
No 7
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.5e-52 Score=448.60 Aligned_cols=367 Identities=21% Similarity=0.296 Sum_probs=309.5
Q ss_pred cEEEEEcCCCcCcccCcC------------------------CchhHHhhcCCC-------CcchhHHHHHHHHHHHHHH
Q psy11500 5 KYEVVISGVGGVFPECHS------------------------FHEFRELLFSGK-------SGVTVDNRRWPIGLVDILF 53 (387)
Q Consensus 5 ~v~f~F~GqGsq~~~m~~------------------------~~~l~~~l~~~~-------~~~q~ai~a~q~al~~ll~ 53 (387)
+++|+|+|||+||.+|.. ..++.+.++... +..||++|++|++|+++|+
T Consensus 526 ~~vfvf~gqgsq~~~mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~~Qp~lfai~~ala~l~~ 605 (1061)
T COG3321 526 KTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESIDFAQPALFAVSVALAALWR 605 (1061)
T ss_pred ceEEEeCchHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCccccCcchhhhHHHHHHHHHHHHHH
Confidence 699999999999999911 133344444433 2359999999999999999
Q ss_pred HcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCCCCceEEEEeCCH-HHHHHhhcCC-CCEEEEEee
Q psy11500 54 ALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLGY-KQMKDMLADY-PTIEIACHN 131 (387)
Q Consensus 54 ~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~~~g~M~av~~~~-~~~~~~l~~~-~~v~iA~~N 131 (387)
+||++|++|+|||+||++||+++|++|++|+++++..||++|+.. ...|+|++|.++. +++.+++... .++.||++|
T Consensus 606 s~gv~p~~viGhS~gE~aaA~~aGv~s~~d~~~~v~~Rg~lm~~~-~~~G~m~~v~~~~~~~~~~~~~~~~~~v~ia~~n 684 (1061)
T COG3321 606 SWGVIPGAVIGHSLGELAAAVAAGVLSLEDALRVVATRGRLMQQL-AGEGAMLAVELSLLAEVQELLALGRPQVPLAAVN 684 (1061)
T ss_pred hcCCcCccccCcCHHHHHHHHHhccCChhhhhHhhhhcchhhccC-CCCcchhhhhcCccchhhHHhhccccceeEEEec
Confidence 999999999999999999999999999999999999999999983 3449999998887 7777777654 479999999
Q ss_pred CCCcEEEeCCHHHHHHHHHHHHhCCceEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEecccccccCCC
Q psy11500 132 ASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGS 211 (387)
Q Consensus 132 sp~~~visG~~~~l~~l~~~l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~~~~~ 211 (387)
+|+++||+|+++++.++...+++.+++++++++ +++|||+.|+++.++|.+.+.++.++. +.+|++|++++..
T Consensus 685 ~P~~~vi~g~~~~i~~l~~~~~~~~~~~~~~~v-~~a~hs~~m~~~~~~~~~~la~i~~~~--p~~p~~S~~~~~~---- 757 (1061)
T COG3321 685 SPQQVVIAGDPEAIAALIARLQAQGVRARRLAV-SHAFHSPLMDPILDEFAAALADLAPRP--PQIPLISNVTGDL---- 757 (1061)
T ss_pred CCceEEecCCHHHHHHHHHHHhccCcccceeee-eeccccHHHHHHHHHHHHHHhhcccCC--CCcceeeeeeccc----
Confidence 999999999999999999999999999999999 999999999999999999999999887 8999999999876
Q ss_pred CccCCCCHHHHHHhcccceehHHHHhhccCCC--eEEEECCChhHHHHHHHHhCCCCceeeecccCCCCChHHHHHHHHH
Q psy11500 212 PLAQTSSAEYHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIG 289 (387)
Q Consensus 212 ~~~~~~~~~y~~~~l~~pV~f~~ai~~l~~~~--~~vEiGP~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 289 (387)
......+++||.+|+|+||+|.++++.+.+.+ +|+|+|||+.|+..+++++... ...+.++.|+ .++...+...++
T Consensus 758 ~~~~~~d~~yw~~~~r~~v~f~~~i~~~~~~~~~~f~E~~p~p~l~~~~~~~~~~~-~~~~~~~~r~-~~~~~~~~~~~~ 835 (1061)
T COG3321 758 AGEPGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDA-ILSIATLRRD-APELLSFLAALA 835 (1061)
T ss_pred cCCcccCHHHHHHHHHhhccHHHHHHHHHhcccceEEEecCCHhHHHHHHHHhhhh-hcchhhhccc-ccchhHHHHHHH
Confidence 23455679999999999999999999998874 8999999999999999999765 5566677775 677799999999
Q ss_pred HHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhh---cccC--CC-Cc----ccccccccccccc
Q psy11500 290 KLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSELEVQ---IKSY--PA-DE----EFAGLFHEVYKTN 359 (387)
Q Consensus 290 ~L~~~G~~v~~~~~~~~~~~~~~~~~~~~lP~y~~~~~~~W~~~~~~~~---~~~g--~~-~~----~~~~~~~~~~~~~ 359 (387)
+||..|.++||..++... ..+++.+|+|+|+|.+||++...... ...| .. .. .+...+.....+|
T Consensus 836 ~l~~~g~~~dw~~~~~~~-----~~~~v~lp~~~~q~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1061)
T COG3321 836 QLFVAGVAVDWSPLVYGP-----DGRLVELPTYPFQRQRFWLDPEALGVASHPLLGAVLGRPSSGEVVLQGSLDLLAVPW 910 (1061)
T ss_pred HHHhcCCCcCcHhhhcCC-----ccccccCCCCCceeccccccccccccccccccchhccCCCCccccccccccccccch
Confidence 999999999999887653 22378899999999999998751111 0012 11 01 1112223344589
Q ss_pred ccCCccCCeeeehhccchH-HHhhcccc
Q psy11500 360 VNRHTLRGYVLTPDTSAQD-ETENLEQV 386 (387)
Q Consensus 360 l~~H~v~g~~l~Paa~~~e-a~~A~~~~ 386 (387)
+.+|.+....++|+++|.+ ++.+++++
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1061)
T COG3321 911 LADHDVRNVAALPGAAYVELALAAADEV 938 (1061)
T ss_pred hhhchhccccccccchhhhhhhhhhhhc
Confidence 9999999999999999999 88887764
No 8
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=100.00 E-value=2.3e-50 Score=384.39 Aligned_cols=258 Identities=28% Similarity=0.430 Sum_probs=224.5
Q ss_pred EcCCCcCcccCc-----C-------------------CchhHHhhcCCCC---------cchhHHHHHHHHHHHHHHHcC
Q psy11500 10 ISGVGGVFPECH-----S-------------------FHEFRELLFSGKS---------GVTVDNRRWPIGLVDILFALG 56 (387)
Q Consensus 10 F~GqGsq~~~m~-----~-------------------~~~l~~~l~~~~~---------~~q~ai~a~q~al~~ll~~~G 56 (387)
|||||+||++|. . ..++.+.+..++. ..||++|++|+|++++|+++|
T Consensus 1 F~GQG~q~~~m~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~l~~~~~~q~~i~~~~~a~~~~l~~~G 80 (298)
T smart00827 1 FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEVAQPALFAVQVALARLWRSWG 80 (298)
T ss_pred CCCCchhHHHHHHHHHHcCHHHHHHHHHHHHHHHHhcCCCHHHHHcCCCCchhhhcccchhHHHHHHHHHHHHHHHHHcC
Confidence 899999999991 1 2344455544321 249999999999999999999
Q ss_pred CCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCCCCceEEEEeCCHHHHHHhhcCCC-CEEEEEeeCCCc
Q psy11500 57 ITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLGYKQMKDMLADYP-TIEIACHNASDS 135 (387)
Q Consensus 57 i~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~~~g~M~av~~~~~~~~~~l~~~~-~v~iA~~Nsp~~ 135 (387)
++|++++|||+|||+|+|+||++|++|++++++.|+++|++. ...|+|++|+++.+++++.+.+++ .++|||+|+|++
T Consensus 81 i~p~~~~GhSlGE~aA~~~ag~~~~~~~l~l~~~r~~~~~~~-~~~g~m~av~~~~~~~~~~l~~~~~~~~ia~~ns~~~ 159 (298)
T smart00827 81 VRPDAVVGHSLGEIAAAYVAGVLSLEDAARLVAARGRLMQAL-PGGGAMLAVGLSEEEVEELLAGYGGRVSVAAVNGPSS 159 (298)
T ss_pred CcccEEEecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHHHhcCCcEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999874 457999999999999999998764 599999999999
Q ss_pred EEEeCCHHHHHHHHHHHHhCCceEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEecccccccCCCCccC
Q psy11500 136 CTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQ 215 (387)
Q Consensus 136 ~visG~~~~l~~l~~~l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~ 215 (387)
+||||+++.++++.+.++.+|+++++|++ ++||||++|+++.++|++.++.+.+.+ +.+|++|+++|+... ..+
T Consensus 160 ~visG~~~~l~~l~~~l~~~~~~~~~L~v-~~~fHs~~~~~~~~~~~~~l~~~~~~~--~~~pv~S~~~g~~~~---~~~ 233 (298)
T smart00827 160 VVLSGDEDAVDELAAALEARGIRARRLKV-DHAFHSPHMDPILDEFREALAGITPRP--PRIPFVSTVTGELID---GAE 233 (298)
T ss_pred EEEECCHHHHHHHHHHHHHCCceEEECCC-CCCCchHHHHHHHHHHHHHHhhCCCCC--CCCcEEeCCCCcccC---CCC
Confidence 99999999999999999999999999999 999999999999999999999888765 789999999987642 223
Q ss_pred CCCHHHHHHhcccceehHHHHhhccC-CC--eEEEECCChhHHHHHHHHhCCCC-ceeeeccc
Q psy11500 216 TSSAEYHTNNLLSSVFFEEASAHIPA-NA--ICIEIAPHGLLQAILKRSLAEKE-VVNIPLTL 274 (387)
Q Consensus 216 ~~~~~y~~~~l~~pV~f~~ai~~l~~-~~--~~vEiGP~~~L~~~~~~~l~~~~-~~~~~~~~ 274 (387)
..+++||.+|+++||+|.++++.+.+ .+ +|||+||+++|+++++++++..+ ..+.++++
T Consensus 234 ~~~~~~l~~~l~~pV~~~~~i~~l~~~~g~~~~ie~Gp~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (298)
T smart00827 234 LDDAEYWVRNLREPVRFADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTLPAAGGAVVVPSLR 296 (298)
T ss_pred CCCHHHHHHHhhccEeHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHHHHHhccCCceEEeecc
Confidence 34599999999999999999999985 33 69999999999999999987542 23444443
No 9
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=100.00 E-value=1.2e-50 Score=393.19 Aligned_cols=255 Identities=18% Similarity=0.166 Sum_probs=220.3
Q ss_pred CCCcEEEEEcCCCcCcccCcC----C---------------chhHHhhcCCC-------CcchhHHHHHHHHHHHHHHHc
Q psy11500 2 PGEKYEVVISGVGGVFPECHS----F---------------HEFRELLFSGK-------SGVTVDNRRWPIGLVDILFAL 55 (387)
Q Consensus 2 ~~~~v~f~F~GqGsq~~~m~~----~---------------~~l~~~l~~~~-------~~~q~ai~a~q~al~~ll~~~ 55 (387)
..+|++|+|||||+||++|.. + .++.+.+++++ ...||+||++||+++++|+++
T Consensus 36 ~~~~~a~lFpGQGsq~~gm~~~~~~~p~~~~~~~~~~~~lg~~l~~~~~~~~~~~l~~~~~~qp~i~~~~~a~~~~l~~~ 115 (343)
T PLN02752 36 YKPTTAFLFPGQGAQAVGMGKEAAEVPAAKALFDKASEILGYDLLDVCVNGPKEKLDSTVVSQPAIYVASLAAVEKLRAR 115 (343)
T ss_pred CCCCEEEEECCCCcchhhHHHHHHhCHHHHHHHHHHHHHhCCCHHHHHhcCCHHHHhcchhhhHHHHHHHHHHHHHHHhc
Confidence 456899999999999999932 1 23445554432 235999999999999999999
Q ss_pred CCCC------CEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhccc-CCCCceEEEE-eCCHHHHHHhhcCC-----
Q psy11500 56 GITP------DGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAI-GLGYKQMKDMLADY----- 122 (387)
Q Consensus 56 Gi~P------~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~-~~~~g~M~av-~~~~~~~~~~l~~~----- 122 (387)
|++| ++++|||+|||+|+|+||+++++|++++++.|+++|++. ...+|.|++| +++.+++++++..+
T Consensus 116 g~~~~~~~~~~~~~GHSlGE~aA~~~AG~ls~e~al~lv~~R~~~m~~~~~~~~g~m~av~g~~~~~~~~~l~~~~~~~~ 195 (343)
T PLN02752 116 DGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQAAADAGPSGMVSVIGLDSDKVQELCAAANEEVG 195 (343)
T ss_pred CCCcccccCCCeeeeccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCccEEEEeCCCHHHHHHHHHHhhhccC
Confidence 9755 678999999999999999999999999999999999865 3457888887 89999999999642
Q ss_pred --CCEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhCC-ceEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceE
Q psy11500 123 --PTIEIACHNASDSCTLSGPSADVEALVESLVAQG-IFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKW 199 (387)
Q Consensus 123 --~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~g-i~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (387)
..++|||+|+|+++||||++++++++.+.+++.+ +++++|++ ++|||||+|+++.+++.+.++.+.+++ |.+|+
T Consensus 196 ~~~~v~IA~~Nsp~~~vIsG~~~~l~~l~~~l~~~~~~~~~~L~v-~~pfHsp~m~~~~~~l~~~l~~~~~~~--p~ipv 272 (343)
T PLN02752 196 EDDVVQIANYLCPGNYAVSGGKKGIDAVEAKAKSFKARMTVRLAV-AGAFHTSFMEPAVDALEAALAAVEIRT--PRIPV 272 (343)
T ss_pred CCCeEEEEEEcCCCCEEEECcHHHHHHHHHHHHhcCCceEEECCC-CCCcchHHHHHHHHHHHHHHhcCCCCC--CCceE
Confidence 2599999999999999999999999999998865 68999999 999999999999999999999988876 89999
Q ss_pred EecccccccCCCCccCCCCHHHHHHhcccceehHHHHhhccCCC--eEEEECCChhHHHHHHHHhC
Q psy11500 200 ISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLA 263 (387)
Q Consensus 200 ~s~~~g~~~~~~~~~~~~~~~y~~~~l~~pV~f~~ai~~l~~~~--~~vEiGP~~~L~~~~~~~l~ 263 (387)
+|+++|.... +.. ..++||.+|+++||+|.++++.+.+.+ .|||+||+++|+++++++.+
T Consensus 273 iS~~tg~~~~--~~~--~~~~~l~~~l~~PV~~~~~i~~l~~~g~~~~iEiGP~~~L~~l~~~~~~ 334 (343)
T PLN02752 273 ISNVDAQPHS--DPA--TIKKILARQVTSPVQWETTVKTLLEKGLEKSYELGPGKVIAGIVKRVDK 334 (343)
T ss_pred EEcCCCCccC--ChH--HHHHHHHHHCcCCEEHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHhhC
Confidence 9999987642 222 248999999999999999999998875 69999999999999999864
No 10
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=100.00 E-value=9.2e-51 Score=382.44 Aligned_cols=255 Identities=26% Similarity=0.300 Sum_probs=227.6
Q ss_pred CcEEEEEcCCCcCcccCcC--------------------CchhHHhhcCCCCc-------chhHHHHHHHHHHHHHHHcC
Q psy11500 4 EKYEVVISGVGGVFPECHS--------------------FHEFRELLFSGKSG-------VTVDNRRWPIGLVDILFALG 56 (387)
Q Consensus 4 ~~v~f~F~GqGsq~~~m~~--------------------~~~l~~~l~~~~~~-------~q~ai~a~q~al~~ll~~~G 56 (387)
.+++|+||||||||.||.. ..++.++++++++. .||+|++++++.++.|++.|
T Consensus 2 ~~~A~~FpGQGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l~~~l~~i~~~~p~~~L~~T~~tQPal~~~s~a~~~~l~~~~ 81 (310)
T COG0331 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQNTQPALLLVSLAAYRVLAEQG 81 (310)
T ss_pred CcceEEeCCchHHHHHhHHHHHhccHHHHHHHHHHHHHhcccHHHHhcCCCHHHhcccchhhHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999911 24778888877764 49999999999999999965
Q ss_pred --CCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhccc-CCCCceEEEE-eCCHHHHHHhhcCCC---CEEEEE
Q psy11500 57 --ITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAI-GLGYKQMKDMLADYP---TIEIAC 129 (387)
Q Consensus 57 --i~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~-~~~~g~M~av-~~~~~~~~~~l~~~~---~v~iA~ 129 (387)
++|+++.|||+|||+|++++|+++++|+++++..||.+|++. ..+.|+|.+| +++.++++++|++.. .|+||+
T Consensus 82 ~~~~p~~~aGHSlGEysAl~~ag~~~~ed~~~Lv~~RG~~M~~a~p~~~g~Maav~gl~~e~v~~~~~~~~~~~~v~iaN 161 (310)
T COG0331 82 LGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIAN 161 (310)
T ss_pred CCCCCceeecccHhHHHHHHHcccccHHHHHHHHHHHHHHHHHHccCCCccHHHHcCCCHHHHHHHHHHhccCCeEEEee
Confidence 999999999999999999999999999999999999999986 4467999998 899999999998864 399999
Q ss_pred eeCCCcEEEeCCHHHHHHHHHHHHhCCc-eEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEeccccccc
Q psy11500 130 HNASDSCTLSGPSADVEALVESLVAQGI-FARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDA 208 (387)
Q Consensus 130 ~Nsp~~~visG~~~~l~~l~~~l~~~gi-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~~ 208 (387)
+|+|.|+||||.+++|+++...+++.|. +...|+| +.||||++|+|+.++|.+.+.++.+.+ +.+|+++++++...
T Consensus 162 ~N~~~QiVIsG~~~ale~a~~~~~~~g~kr~i~l~v-s~pfHs~lm~pa~~~~~~~l~~~~~~~--~~ipvi~n~~~~~~ 238 (310)
T COG0331 162 YNSPGQIVISGTKEALEKAAEILKEAGAKRAIPLPV-SGPFHSPLMKPAADELAEALEKVRFSD--PLVPVISNVDAKPV 238 (310)
T ss_pred eCCCCcEEEECCHHHHHHHHHHHHHhhhhhhcccCC-CchhhhhhhHHHHHHHHHHHHhcCCCC--ccceeeeccccccc
Confidence 9999999999999999999999999985 5777999 999999999999999999999999987 88999999997653
Q ss_pred CCCCccCCCCHHHHHHhcccceehHHHHhhccCCC--eEEEECCChhHHHHHHHHhCCC
Q psy11500 209 WGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLAEK 265 (387)
Q Consensus 209 ~~~~~~~~~~~~y~~~~l~~pV~f~~ai~~l~~~~--~~vEiGP~~~L~~~~~~~l~~~ 265 (387)
.+... .++-+.+|+.+||+|.++++.+.+.+ .|+|+||+++|++++|++.+..
T Consensus 239 --~~~~~--i~~~L~~q~~~pVrW~etv~~l~~~gv~~~~EiGpg~vL~gL~kri~~~~ 293 (310)
T COG0331 239 --LDGEE--IRELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLTGLAKRILKGL 293 (310)
T ss_pred --cCHHH--HHHHHHHHhcCCeeHHHHHHHHHhcCceEEEEeCCcHHHHHHHHhhcCCC
Confidence 12223 37889999999999999999999875 5999999999999999998753
No 11
>KOG2926|consensus
Probab=100.00 E-value=1.8e-39 Score=297.26 Aligned_cols=256 Identities=22% Similarity=0.233 Sum_probs=219.4
Q ss_pred CCCCcEEEEEcCCCcCcccC-------------------cCCchhHHhhcCCCCc-------chhHHHHHHHHHHHHHHH
Q psy11500 1 MPGEKYEVVISGVGGVFPEC-------------------HSFHEFRELLFSGKSG-------VTVDNRRWPIGLVDILFA 54 (387)
Q Consensus 1 ~~~~~v~f~F~GqGsq~~~m-------------------~~~~~l~~~l~~~~~~-------~q~ai~a~q~al~~ll~~ 54 (387)
||..-.+++|||||+||.|| ....++.++|.++|.+ .||+|++..+|..+.|+.
T Consensus 59 ~~~e~s~iLFPGQG~q~vgm~q~~l~~p~a~~~~~~A~~vl~YdLlki~~~gP~e~ldrT~~~QpAI~~~SlAa~E~l~~ 138 (386)
T KOG2926|consen 59 KPKETSVILFPGQGAQSVGMGQYLLQNPAARRLFAEASNVLGYDLLKICVNGPKEKLDRTVIAQPAIDVSSLAALEQLRL 138 (386)
T ss_pred CcccceEEEeCCCChhhhhhhHHHHhCcchhHHHHHHHHHhhHHHHHHHhcCccchhhcccccccceecccHHHHHhccc
Confidence 56677999999999999999 1136788888887755 399999999999999999
Q ss_pred cC---CC-CCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhccc-CCCCceEEEE-eCCHHHHHHhhcC-------
Q psy11500 55 LG---IT-PDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAI-GLGYKQMKDMLAD------- 121 (387)
Q Consensus 55 ~G---i~-P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~-~~~~g~M~av-~~~~~~~~~~l~~------- 121 (387)
.| ++ -++..|||+|||+|++++|+|++++|++++..|+..|+.+ ..-.++|..+ +.+..++...+..
T Consensus 139 ~~p~~ie~~~~~aGfSlGEy~alvfa~aLsFs~alKlVk~Ra~AMs~a~~~~~~~m~~~~~~p~sk~~~~~~~a~~~~~~ 218 (386)
T KOG2926|consen 139 LGPSIIENLVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEAMSEASELVASGMVMILGLPTSKVQKACASANQLSAS 218 (386)
T ss_pred cCcchhheeeeeccccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccceeecCcHhHHHHHHhhhHHHhhh
Confidence 88 44 5678999999999999999999999999999999999986 4456677665 6676777776642
Q ss_pred --CCCEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhCCc-eEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCce
Q psy11500 122 --YPTIEIACHNASDSCTLSGPSADVEALVESLVAQGI-FARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSK 198 (387)
Q Consensus 122 --~~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~gi-~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~ 198 (387)
++-++||+||+|+++||||+.++|+-+.+.-++.++ +.++|.| +.||||++|+|+.+.+.++|..+..+. |.+|
T Consensus 219 qe~~~~~VANyl~~~~~VvsG~~~~Le~lee~~~sf~~~r~~~LaV-sgAFHTr~MepAvepl~~Al~~vei~~--p~~p 295 (386)
T KOG2926|consen 219 QEYPVCEVANYLSPGQRVVSGLVKALESLEENAKSFKIRRMKRLAV-SGAFHTRLMEPAVEPLTKALKAVEIKN--PVIP 295 (386)
T ss_pred ccCCeeeeeccCCCCcEEeeCcHHHHHHHHHHHHhhhhhhheeeee-ccccchhhhhhhHHHHHHHHHHHHhcC--CCcc
Confidence 245899999999999999999999999977777777 6889999 999999999999999999999998877 7999
Q ss_pred EEecccccccCCCCccCCCCHHHHHHhcccceehHHHHhhccCC---C--eEEEECCChhHHHHHHHHhC
Q psy11500 199 WISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPAN---A--ICIEIAPHGLLQAILKRSLA 263 (387)
Q Consensus 199 ~~s~~~g~~~~~~~~~~~~~~~y~~~~l~~pV~f~~ai~~l~~~---~--~~vEiGP~~~L~~~~~~~l~ 263 (387)
++||++|.... ...++ .+-+.+|+.+||+|.++++++.+. + .++|+|||.+|.+.+++...
T Consensus 296 ViSNvdg~~~~--~~~hi--~~~l~kQ~~rPV~we~~~~ti~sk~~~g~~~sye~GPG~~l~~ilk~~~~ 361 (386)
T KOG2926|consen 296 VISNVDGKPYR--DPGHI--LKQLAKQIVRPVQWEQTLKTIYSKQGVGFPRSYEVGPGRVLVAILKRNNP 361 (386)
T ss_pred eeecCCCcccC--ChHHH--HHHHHHHhcCchhHHHHHHHHHhcCCCCCCceEeeCCcHHHHHHHHHhCc
Confidence 99999998763 23333 677899999999999999999765 3 59999999999999998754
No 12
>smart00826 PKS_DH PKS_DH.
Probab=95.91 E-value=0.0034 Score=53.22 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=27.2
Q ss_pred cccccccccCCccCCeeeehhccchH-HHhhccc
Q psy11500 353 HEVYKTNVNRHTLRGYVLTPDTSAQD-ETENLEQ 385 (387)
Q Consensus 353 ~~~~~~~l~~H~v~g~~l~Paa~~~e-a~~A~~~ 385 (387)
+....+|+.||+++|.+++|+++|++ +++|+.+
T Consensus 23 ~~~~~~~l~~h~v~~~~~~P~~~~~~~~~~a~~~ 56 (167)
T smart00826 23 SLRTHPWLADHRVGGTVVLPGAAYVEMALAAADE 56 (167)
T ss_pred CCCCCchhhcCEECCEEEecHHHHHHHHHHHHHH
Confidence 33345699999999999999999999 7777654
No 13
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=94.54 E-value=0.13 Score=44.65 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHH
Q psy11500 41 NRRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAA 88 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv 88 (387)
..+.+++..+.|.+.|++||.+.|-|.|-+.|++.+.-.+.++...+.
T Consensus 9 rG~~~~Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~~~~~~~~~ 56 (172)
T cd07198 9 LGIYHVGVAKALRERGPLIDIIAGTSAGAIVAALLASGRDLEEALLLL 56 (172)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 346789999999999999999999999999999988888988877765
No 14
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=94.01 E-value=0.22 Score=49.06 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHHH
Q psy11500 40 DNRRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAH 89 (387)
Q Consensus 40 ai~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~ 89 (387)
+.-...++..+.|.+.|+.|+.+.|-|.|.+.||..|. .+.++..++..
T Consensus 93 ~~G~~h~Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~-~~~~e~~~~l~ 141 (391)
T cd07229 93 IFGLCHLGVVKALWLRGLLPRIITGTATGALIAALVGV-HTDEELLRFLD 141 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEecHHHHHHHHHHc-CCHHHHHHHHh
Confidence 34567889999999999999999999999999998888 57777777654
No 15
>PRK10279 hypothetical protein; Provisional
Probab=93.43 E-value=0.23 Score=47.39 Aligned_cols=37 Identities=35% Similarity=0.422 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHH-HHHhCc
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGC-AYADGC 78 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aA-a~~aG~ 78 (387)
-+.+++..+.|.+.||.||+++|-|+|.+.+ +|++|.
T Consensus 17 G~ahiGVL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 17 GWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred HHHHHHHHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCC
Confidence 3568899999999999999999999999876 566675
No 16
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=92.97 E-value=0.28 Score=42.63 Aligned_cols=46 Identities=26% Similarity=0.280 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHH
Q psy11500 43 RWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAA 88 (387)
Q Consensus 43 a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv 88 (387)
+.+++..+.|.+.|+.||.++|-|.|-+.|+..+--.+.++..+..
T Consensus 13 ~~~~Gvl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~~~~~~~~~~ 58 (175)
T cd07205 13 LAHIGVLKALEEAGIPIDIVSGTSAGAIVGALYAAGYSPEEIEERA 58 (175)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 5688899999999999999999999999999888777888877654
No 17
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=92.70 E-value=0.36 Score=42.56 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHH
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAA 88 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv 88 (387)
-+.++++.+.|.+.|+.||.++|-|.|-+.|+..+--.+.++..++.
T Consensus 11 G~~~~Gvl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~~~~~~~~~~ 57 (194)
T cd07207 11 GIAYIGALKALEEAGILKKRVAGTSAGAITAALLALGYSAADIKDIL 57 (194)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 35668889999999999999999999999988777667777765554
No 18
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=92.56 E-value=0.33 Score=43.88 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCC
Q psy11500 41 NRRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFT 80 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls 80 (387)
--+.|++..+.|.+.|+.+|.+.|.|.|-+.|+..+.-.+
T Consensus 9 rG~~~~Gvl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 9 LGAYQAGVLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 3578999999999999999999999999999988877776
No 19
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=92.24 E-value=0.38 Score=46.00 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHH
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQ 83 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~ed 83 (387)
-+.+++..+.|.+.||.|+++.|-|+|.+.|+..|.-.+.++
T Consensus 23 G~~hiGVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~~~~ 64 (306)
T COG1752 23 GAAHIGVLKALEEAGIPIDVIAGTSAGAIVAALYAAGMDEDE 64 (306)
T ss_pred HHHHHHHHHHHHHcCCCccEEEecCHHHHHHHHHHcCCChhH
Confidence 467889999999999999999999999999877776666654
No 20
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=91.80 E-value=0.52 Score=42.85 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHH
Q psy11500 41 NRRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAA 88 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv 88 (387)
-.+.+++..+.|.+.|++|+.+.|-|.|-+.|+..+--.+.++.....
T Consensus 11 rG~~~~GvL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~~~~~~~~~~ 58 (221)
T cd07210 11 GFYAHLGFLAALLEMGLEPSAISGTSAGALVGGLFASGISPDEMAELL 58 (221)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCHHHHHHHHHHcCCCHHHHHHHH
Confidence 357889999999999999999999999999998887777777766553
No 21
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=91.33 E-value=0.6 Score=43.76 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHH
Q psy11500 43 RWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMI 85 (387)
Q Consensus 43 a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~ 85 (387)
+.+++..+.|++.||.+|+|.|-|+|.+.++..|--.+.++-.
T Consensus 23 ~ahiGVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~~~~~~~ 65 (269)
T cd07227 23 ISHIGILQALEEAGIPIDAIGGTSIGSFVGGLYAREADLVPIF 65 (269)
T ss_pred HHHHHHHHHHHHcCCCccEEEEECHHHHHHHHHHcCCchHHHH
Confidence 5678899999999999999999999998876555555665543
No 22
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=91.00 E-value=0.69 Score=44.25 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHH
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILA 87 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~l 87 (387)
-+.++++.+.|.+.||.||.|+|-|.|-+.|+..+.-.+.++....
T Consensus 27 G~ahiGvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~~~~~~~~~ 72 (306)
T cd07225 27 GCAHIGVIKALEEAGIPVDMVGGTSIGAFIGALYAEERNISRMKQR 72 (306)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHH
Confidence 3567888999999999999999999999887655555666554443
No 23
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=90.84 E-value=0.67 Score=40.32 Aligned_cols=43 Identities=28% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHH
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQM 84 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda 84 (387)
-+.+++..+.|++.|+.||.+.|-|.|-+.|+..+.-.+.++.
T Consensus 12 G~~~~Gvl~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~~~~~ 54 (175)
T cd07228 12 GWAHIGVLRALEEEGIEIDIIAGSSIGALVGALYAAGHLDALE 54 (175)
T ss_pred HHHHHHHHHHHHHCCCCeeEEEEeCHHHHHHHHHHcCCCHHHH
Confidence 4568889999999999999999999999988777666665543
No 24
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=87.64 E-value=2.1 Score=39.15 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHcCCCC--CEEEecChhHHHHHHHhCcCCHHHHHHHHHH
Q psy11500 40 DNRRWPIGLVDILFALGITP--DGIVGHSVGELGCAYADGCFTAEQMILAAHA 90 (387)
Q Consensus 40 ai~a~q~al~~ll~~~Gi~P--~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~ 90 (387)
.+++..++..+.|.+.||.| +.++|-|.|-++|++.+-..+.++..++...
T Consensus 9 ~lg~yh~GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~~~~~~~~~~~ 61 (233)
T cd07224 9 LLFPYHLGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLSPEEALEATEE 61 (233)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35677889999999999985 5899999999998877777788777665543
No 25
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=87.29 E-value=1.6 Score=41.47 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 41 NRRWPIGLVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
.-+.+++..+.|.+.|+.|+.+.|-|.|.+.|+..+-
T Consensus 80 ~g~~h~Gvl~aL~e~~l~~~~i~GtSaGAi~aa~~~~ 116 (298)
T cd07206 80 LGLFHLGVVKALWEQDLLPRVISGSSAGAIVAALLGT 116 (298)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEEcHHHHHHHHHHc
Confidence 3467889999999999999999999999998876654
No 26
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=86.24 E-value=2.5 Score=39.04 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHcC--CCCCEEEecChhHHHHHHHhCcCCHHHHHHH
Q psy11500 41 NRRWPIGLVDILFALG--ITPDGIVGHSVGELGCAYADGCFTAEQMILA 87 (387)
Q Consensus 41 i~a~q~al~~ll~~~G--i~P~~v~GHS~GE~aAa~~aG~ls~eda~~l 87 (387)
..+.+++..+.|++.| +.++.+.|-|.|-++|++.+-..+.++..+.
T Consensus 11 rG~yh~GVl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~~~~~~~~ 59 (245)
T cd07218 11 LGIYHVGVAVCLKKYAPHLLLNKISGASAGALAACCLLCDLPLGEMTSD 59 (245)
T ss_pred HHHHHHHHHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCcHHHHHHH
Confidence 4567889999999999 5599999999999999887777777765543
No 27
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=86.01 E-value=2.6 Score=40.38 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHH
Q psy11500 41 NRRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAA 88 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv 88 (387)
.-+..++..+.|.+.|+.|+.+.|-|.|.+.|+..+. -+.++-.++.
T Consensus 79 ~g~~h~GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~-~t~~El~~~~ 125 (323)
T cd07231 79 LGTFHVGVVRTLVEHQLLPRVIAGSSVGSIVCAIIAT-RTDEELQSFF 125 (323)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 4467889999999999999999999999999988776 5777766665
No 28
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=84.71 E-value=1.1 Score=40.39 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhCc
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADGC 78 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ 78 (387)
+.+++.+.|+++-.++|||+|-..|..+|..
T Consensus 56 l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~ 86 (242)
T PRK11126 56 LSQTLQSYNILPYWLVGYSLGGRIAMYYACQ 86 (242)
T ss_pred HHHHHHHcCCCCeEEEEECHHHHHHHHHHHh
Confidence 5677888999999999999999999887754
No 29
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=84.49 E-value=3.7 Score=37.88 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHcCCC--C--CEEEecChhHHHHHHHhCcCCHHHHHHHHH
Q psy11500 41 NRRWPIGLVDILFALGIT--P--DGIVGHSVGELGCAYADGCFTAEQMILAAH 89 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~--P--~~v~GHS~GE~aAa~~aG~ls~eda~~lv~ 89 (387)
..+.+++..+.|.+.|+. + +.++|-|.|-++|++.+-..+.++..+...
T Consensus 10 ~G~yh~GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~~~~~~~~~~ 62 (243)
T cd07204 10 LGIYHVGVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVSMEEACSFIL 62 (243)
T ss_pred HHHHHHHHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345788999999999987 3 599999999999987777778777655443
No 30
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=83.62 E-value=1.8 Score=40.36 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCC-CCEEEecChhHHHHHH-HhCcCC
Q psy11500 43 RWPIGLVDILFALGIT-PDGIVGHSVGELGCAY-ADGCFT 80 (387)
Q Consensus 43 a~q~al~~ll~~~Gi~-P~~v~GHS~GE~aAa~-~aG~ls 80 (387)
+.+++..+.|.+.|+. +|.++|-|.|-+.|+. ++|.-.
T Consensus 11 ~~~~Gvl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~ 50 (266)
T cd07208 11 AYTAGVLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQRG 50 (266)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCcc
Confidence 5788999999999999 9999999999988765 566543
No 31
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=83.34 E-value=3 Score=41.74 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHH
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILA 87 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~l 87 (387)
-+..++..+.|.+.|+.|+.+.|-|.|.+.|+..+. -+.++..++
T Consensus 85 G~~hiGVLkaL~E~gl~p~vIsGTSaGAivAal~as-~~~eel~~~ 129 (421)
T cd07230 85 GMFHIGVLKALFEANLLPRIISGSSAGSIVAAILCT-HTDEEIPEL 129 (421)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHH
Confidence 356788999999999999999999999999876665 566665444
No 32
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=82.88 E-value=4.6 Score=37.48 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcCCC----CCEEEecChhHHHHHHHhCcCCHHHHHHHHH
Q psy11500 41 NRRWPIGLVDILFALGIT----PDGIVGHSVGELGCAYADGCFTAEQMILAAH 89 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~ 89 (387)
..+.+++..+.|.+.|+. ++.++|-|.|-++|+..+-..+.++..+...
T Consensus 11 rG~yh~GVl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~asg~~~~~~~~~~~ 63 (252)
T cd07221 11 LGFYHVGVTRCLSERAPHLLRDARMFFGASAGALHCVTFLSGLPLDQILQILM 63 (252)
T ss_pred HHHHHHHHHHHHHHhCcchhccCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345688999999999986 8999999999999887766667777666554
No 33
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=82.51 E-value=3.4 Score=41.19 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHHHHHHHH
Q psy11500 43 RWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAA 88 (387)
Q Consensus 43 a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv 88 (387)
+..++..+.|.+.|+.|+.+.|-|.|.+.|+..+. -+.++..++.
T Consensus 80 ~~h~GVlkaL~e~gllp~iI~GtSAGAivaalla~-~t~~el~~~~ 124 (407)
T cd07232 80 YYHFGVVKALLDADLLPNVISGTSGGSLVAALLCT-RTDEELKQLL 124 (407)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 46778899999999999999999999999887775 5666665554
No 34
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=82.37 E-value=5 Score=37.19 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHcCCC----CCEEEecChhHHHHHHHhCcCCHHHHHHHH
Q psy11500 41 NRRWPIGLVDILFALGIT----PDGIVGHSVGELGCAYADGCFTAEQMILAA 88 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~ls~eda~~lv 88 (387)
..+..++.++.|.+.|+. ++.+.|-|.|-++|++.+-..+.++..+.+
T Consensus 15 rG~yh~GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~~~~~~~~~ 66 (249)
T cd07220 15 LGVYHVGVASCLLEHAPFLVANARKIYGASAGALTATALVTGVCLGECGASV 66 (249)
T ss_pred HHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 456688899999999987 899999999999998766556776644433
No 35
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=81.20 E-value=1.7 Score=39.86 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+.+++++.+++|..++|||+|-..|+.++
T Consensus 84 ~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a 113 (278)
T TIGR03056 84 DLSALCAAEGLSPDGVIGHSAGAAIALRLA 113 (278)
T ss_pred HHHHHHHHcCCCCceEEEECccHHHHHHHH
Confidence 355677788999999999999998887664
No 36
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=79.76 E-value=6.1 Score=38.78 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHcCC----CCCEEEecChhHHHHHHHhCcCCHHHHHHHHH
Q psy11500 40 DNRRWPIGLVDILFALGI----TPDGIVGHSVGELGCAYADGCFTAEQMILAAH 89 (387)
Q Consensus 40 ai~a~q~al~~ll~~~Gi----~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~ 89 (387)
...+.+++.++.|++.|+ .++.++|-|.|-++|+..+-..+.++..++..
T Consensus 22 frGiYHvGVl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG~s~de~~r~~~ 75 (382)
T cd07219 22 FLSFYQAGVVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCGISMDEYLRVLN 75 (382)
T ss_pred HHHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345678999999999885 37999999999999987777778888887764
No 37
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=78.99 E-value=2.3 Score=39.49 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+++...++++-.++|||+|-+.|+.+|
T Consensus 81 ~~~~i~~l~~~~~~LvG~S~GG~va~~~a 109 (276)
T TIGR02240 81 AARMLDYLDYGQVNAIGVSWGGALAQQFA 109 (276)
T ss_pred HHHHHHHhCcCceEEEEECHHHHHHHHHH
Confidence 44667778999999999999999998777
No 38
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=78.53 E-value=2.4 Score=39.76 Aligned_cols=31 Identities=23% Similarity=0.086 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 46 IGLVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 46 ~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
-.+.+++.++++++-.++|||+|-..|+..|
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 3567788889999999999999999987765
No 39
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=77.03 E-value=5.4 Score=35.21 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhCc
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADGC 78 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ 78 (387)
+.+.++..+.++-.++|||+|-+.|..+|..
T Consensus 69 ~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 69 VLALLDHLGIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred HHHHHHHhCCCceEEEEeCchHHHHHHHHHH
Confidence 4566777888888999999999988877654
No 40
>PRK03592 haloalkane dehalogenase; Provisional
Probab=76.83 E-value=2.9 Score=39.18 Aligned_cols=29 Identities=28% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+..+++++|+++-.++|||+|-+.|...+
T Consensus 83 l~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 83 LDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 56778889999999999999999887554
No 41
>PRK00870 haloalkane dehalogenase; Provisional
Probab=76.27 E-value=3 Score=39.31 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+++.+.|+++-.++|||+|-+.|...|
T Consensus 105 l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a 133 (302)
T PRK00870 105 MRSWFEQLDLTDVTLVCQDWGGLIGLRLA 133 (302)
T ss_pred HHHHHHHcCCCCEEEEEEChHHHHHHHHH
Confidence 56778889999989999999998887655
No 42
>PRK11071 esterase YqiA; Provisional
Probab=75.84 E-value=3.5 Score=36.33 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+.+++.+.|+++-.++|||+|-+.|++.|.
T Consensus 51 l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~ 80 (190)
T PRK11071 51 LESLVLEHGGDPLGLVGSSLGGYYATWLSQ 80 (190)
T ss_pred HHHHHHHcCCCCeEEEEECHHHHHHHHHHH
Confidence 456677789999999999999999987763
No 43
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=75.78 E-value=5.1 Score=36.98 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCC----CCEEEecChhHHHHHHHhC
Q psy11500 41 NRRWPIGLVDILFALGIT----PDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG 77 (387)
..+.+++..+.|.+.|++ ++.+.|-|.|-+.|++.+.
T Consensus 10 rG~yhiGVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 10 LGIYHLGAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 446788999999999995 8999999999999988874
No 44
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=75.74 E-value=8.3 Score=37.93 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHcCCC----CCEEEecChhHHHHHHHhCcCCHHHHHHHHHH
Q psy11500 40 DNRRWPIGLVDILFALGIT----PDGIVGHSVGELGCAYADGCFTAEQMILAAHA 90 (387)
Q Consensus 40 ai~a~q~al~~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~ 90 (387)
.+...+++.++.|.+.|.. ++.+.|-|.|.++|++.+...+++++...++.
T Consensus 19 flG~yHvGV~~~L~e~~p~ll~~~~~iaGaSAGAL~aa~~a~g~~~~~~~~~i~~ 73 (405)
T cd07223 19 YLGLYHVGVTECLRQRAPRLLQGARRIYGSSSGALNAVSIVCGKSADFCCSNLLG 73 (405)
T ss_pred HHHHHHHHHHHHHHHhCchhhccCCeeeeeCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4567788999999998732 56799999999999999999999966665544
No 45
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=75.32 E-value=3.9 Score=35.42 Aligned_cols=30 Identities=37% Similarity=0.456 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+.+++++.+.++-.++|||+|-..|+.++
T Consensus 55 ~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a 84 (228)
T PF12697_consen 55 DLAELLDALGIKKVILVGHSMGGMIALRLA 84 (228)
T ss_dssp HHHHHHHHTTTSSEEEEEETHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccc
Confidence 356788889999999999999999887765
No 46
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=75.00 E-value=10 Score=36.36 Aligned_cols=47 Identities=17% Similarity=-0.033 Sum_probs=37.0
Q ss_pred HHHHHHHHHHH-cCCC----CCEEEecChhHHHHHHHhCcCCHHHHHHHHHH
Q psy11500 44 WPIGLVDILFA-LGIT----PDGIVGHSVGELGCAYADGCFTAEQMILAAHA 90 (387)
Q Consensus 44 ~q~al~~ll~~-~Gi~----P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~ 90 (387)
+.+.+.+.|++ .|+. +|.+.|-|.|-+.|+..+--+|.+|...+...
T Consensus 13 ~~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~s~~e~~~~y~~ 64 (312)
T cd07212 13 VLIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGKSLREARRLYLR 64 (312)
T ss_pred HHHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44555566666 5876 89999999999998887778899999887444
No 47
>KOG1454|consensus
Probab=74.17 E-value=7.9 Score=37.36 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+-+.+++.+.+|-.++|||+|-+.|..+|
T Consensus 118 i~~~~~~~~~~~~~lvghS~Gg~va~~~A 146 (326)
T KOG1454|consen 118 IRRFVKEVFVEPVSLVGHSLGGIVALKAA 146 (326)
T ss_pred HHHHHHhhcCcceEEEEeCcHHHHHHHHH
Confidence 45667778889999999999999987655
No 48
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=74.16 E-value=3.8 Score=39.56 Aligned_cols=29 Identities=34% Similarity=0.279 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCC-EEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPD-GIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~-~v~GHS~GE~aAa~~a 76 (387)
+.+++.+.|++.. .++|||+|-+.|...+
T Consensus 127 l~~ll~~l~l~~~~~lvG~SmGG~vA~~~A 156 (343)
T PRK08775 127 IALLLDALGIARLHAFVGYSYGALVGLQFA 156 (343)
T ss_pred HHHHHHHcCCCcceEEEEECHHHHHHHHHH
Confidence 4578888999765 6999999999888765
No 49
>PLN02965 Probable pheophorbidase
Probab=72.19 E-value=3.9 Score=37.46 Aligned_cols=29 Identities=31% Similarity=0.245 Sum_probs=23.8
Q ss_pred HHHHHHHcCC-CCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGI-TPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi-~P~~v~GHS~GE~aAa~~a 76 (387)
+.+++...++ ++-.++|||+|-..|..++
T Consensus 61 l~~~l~~l~~~~~~~lvGhSmGG~ia~~~a 90 (255)
T PLN02965 61 LFALLSDLPPDHKVILVGHSIGGGSVTEAL 90 (255)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHH
Confidence 5677778887 5999999999998887655
No 50
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=70.77 E-value=4.4 Score=37.37 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+.+++...|+++-.++|||+|-+.|...+.
T Consensus 91 l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~ 120 (282)
T TIGR03343 91 VKGLMDALDIEKAHLVGNSMGGATALNFAL 120 (282)
T ss_pred HHHHHHHcCCCCeeEEEECchHHHHHHHHH
Confidence 557778899999999999999999887663
No 51
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=70.75 E-value=5 Score=38.91 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCC-CEEEecChhHHHHHHHh
Q psy11500 47 GLVDILFALGITP-DGIVGHSVGELGCAYAD 76 (387)
Q Consensus 47 al~~ll~~~Gi~P-~~v~GHS~GE~aAa~~a 76 (387)
.+.+++.++|+.+ -.++|||+|-+.|...+
T Consensus 115 ~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a 145 (351)
T TIGR01392 115 AQKLLLDHLGIEQIAAVVGGSMGGMQALEWA 145 (351)
T ss_pred HHHHHHHHcCCCCceEEEEECHHHHHHHHHH
Confidence 3567778899998 89999999998887655
No 52
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=70.54 E-value=4.8 Score=39.27 Aligned_cols=28 Identities=36% Similarity=0.659 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHH
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYA 75 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~ 75 (387)
+.+++.+.|+++-.++|||+|-+.|..+
T Consensus 145 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~ 172 (360)
T PLN02679 145 ILDFLEEVVQKPTVLIGNSVGSLACVIA 172 (360)
T ss_pred HHHHHHHhcCCCeEEEEECHHHHHHHHH
Confidence 5577788899999999999999887543
No 53
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=70.21 E-value=8.6 Score=32.65 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCC--CCCEEEecChhHHHHHHHh
Q psy11500 43 RWPIGLVDILFALGI--TPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 43 a~q~al~~ll~~~Gi--~P~~v~GHS~GE~aAa~~a 76 (387)
+.+++..+.|.+.|+ .++.+.|.|.|-+.|+..+
T Consensus 11 ~~~~gvl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 11 MYHAGVLSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 478888999999999 9999999999999999888
No 54
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=69.90 E-value=12 Score=35.28 Aligned_cols=50 Identities=18% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCC----CCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHH
Q psy11500 43 RWPIGLVDILFALGIT----PDGIVGHSVGELGCAYADGCFTAEQMILAAHARG 92 (387)
Q Consensus 43 a~q~al~~ll~~~Gi~----P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg 92 (387)
+++..+.+.|++.+.+ +|.++|-|.|-+.|+..+--.+.++..++....+
T Consensus 15 i~~~~vL~~Le~~~~~~~~~fD~i~GTSaGaiia~~la~g~~~~e~~~~~~~~~ 68 (288)
T cd07213 15 IVQLVLLKRLAEEFPSFLDQIDLFAGTSAGSLIALGLALGYSPRQVLKLYEEVG 68 (288)
T ss_pred HHHHHHHHHHHHhCcccccceeEEEEeCHHHHHHHHHHcCcCHHHHHHHHHHhC
Confidence 4566666777776654 8999999999999988877779998887765443
No 55
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=69.58 E-value=6.2 Score=36.92 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
..+.+++.|++|-.++|||+|-..|..++
T Consensus 89 ai~~L~~~~~~~v~LvG~SmGG~vAl~~A 117 (266)
T TIGR03101 89 AYRWLIEQGHPPVTLWGLRLGALLALDAA 117 (266)
T ss_pred HHHHHHhcCCCCEEEEEECHHHHHHHHHH
Confidence 45677888999999999999999887654
No 56
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=68.27 E-value=11 Score=36.39 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+++...|+.+-.++|||+|-+.|..+|
T Consensus 187 ~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a 215 (371)
T PRK14875 187 VLAFLDALGIERAHLVGHSMGGAVALRLA 215 (371)
T ss_pred HHHHHHhcCCccEEEEeechHHHHHHHHH
Confidence 45667788988889999999999887655
No 57
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=68.04 E-value=5.7 Score=36.08 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+..++...++++-.++|||+|-+.|..++.
T Consensus 86 ~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~ 115 (288)
T TIGR01250 86 LEEVREKLGLDKFYLLGHSWGGMLAQEYAL 115 (288)
T ss_pred HHHHHHHcCCCcEEEEEeehHHHHHHHHHH
Confidence 445667789999999999999999887763
No 58
>PRK10349 carboxylesterase BioH; Provisional
Probab=67.73 E-value=6.5 Score=35.79 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 49 VDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 49 ~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
++.+.+.++++-.++|||+|-+.|...|
T Consensus 65 ~~~l~~~~~~~~~lvGhS~Gg~ia~~~a 92 (256)
T PRK10349 65 AEAVLQQAPDKAIWLGWSLGGLVASQIA 92 (256)
T ss_pred HHHHHhcCCCCeEEEEECHHHHHHHHHH
Confidence 3445567888889999999999988765
No 59
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=67.16 E-value=2.3 Score=51.76 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=28.9
Q ss_pred ccccccccCCccCCeeeehhccchH-HHhhcccc
Q psy11500 354 EVYKTNVNRHTLRGYVLTPDTSAQD-ETENLEQV 386 (387)
Q Consensus 354 ~~~~~~l~~H~v~g~~l~Paa~~~e-a~~A~~~~ 386 (387)
....|||.||+|+|.+++|++.-++ +.+|++++
T Consensus 2305 ~~~~pfl~dH~i~g~~vlP~~~~~~w~~~~~~~~ 2338 (2582)
T TIGR02813 2305 PKNMTFIADHCIGGDKVLPTVCAIAWMREAAMVA 2338 (2582)
T ss_pred cccCchHHhcccCCeeechHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999 99988764
No 60
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=66.91 E-value=5.1 Score=34.87 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.8
Q ss_pred HHHHHHcCCCCCEEEecCh
Q psy11500 49 VDILFALGITPDGIVGHSV 67 (387)
Q Consensus 49 ~~ll~~~Gi~P~~v~GHS~ 67 (387)
+..|++.|..||.|+|||-
T Consensus 57 ~~~L~~~Gf~PDvI~~H~G 75 (171)
T PF12000_consen 57 ARQLRAQGFVPDVIIAHPG 75 (171)
T ss_pred HHHHHHcCCCCCEEEEcCC
Confidence 4567778999999999984
No 61
>PLN02578 hydrolase
Probab=66.74 E-value=6.4 Score=38.23 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+.+++++.+.+|-.++|||+|-+.|..+|.
T Consensus 142 l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~ 171 (354)
T PLN02578 142 VADFVKEVVKEPAVLVGNSLGGFTALSTAV 171 (354)
T ss_pred HHHHHHHhccCCeEEEEECHHHHHHHHHHH
Confidence 456777788899999999999998877663
No 62
>PRK07581 hypothetical protein; Validated
Probab=66.60 E-value=6.5 Score=37.76 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=20.9
Q ss_pred HHHHcCCCC-CEEEecChhHHHHHHHh
Q psy11500 51 ILFALGITP-DGIVGHSVGELGCAYAD 76 (387)
Q Consensus 51 ll~~~Gi~P-~~v~GHS~GE~aAa~~a 76 (387)
++.+.||++ ..++|||+|-+.|...|
T Consensus 116 l~~~lgi~~~~~lvG~S~GG~va~~~a 142 (339)
T PRK07581 116 LTEKFGIERLALVVGWSMGAQQTYHWA 142 (339)
T ss_pred HHHHhCCCceEEEEEeCHHHHHHHHHH
Confidence 345699998 47899999999987655
No 63
>PRK13604 luxD acyl transferase; Provisional
Probab=66.05 E-value=7.7 Score=37.08 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=23.0
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
..+.+++.+..+-.++|||+|-.+|..+|.
T Consensus 98 aid~lk~~~~~~I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 98 VVDWLNTRGINNLGLIAASLSARIAYEVIN 127 (307)
T ss_pred HHHHHHhcCCCceEEEEECHHHHHHHHHhc
Confidence 345566677788899999999999866553
No 64
>PRK10673 acyl-CoA esterase; Provisional
Probab=65.94 E-value=7.4 Score=35.15 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+...+...|+++-.++|||+|-..|+.++.
T Consensus 71 ~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~ 100 (255)
T PRK10673 71 LLDTLDALQIEKATFIGHSMGGKAVMALTA 100 (255)
T ss_pred HHHHHHHcCCCceEEEEECHHHHHHHHHHH
Confidence 345566678888899999999998887663
No 65
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=65.82 E-value=20 Score=34.08 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHc-CCC----CCEEEecChhHHHHHHHh-CcCCHHHHHHHHHHHH
Q psy11500 43 RWPIGLVDILFAL-GIT----PDGIVGHSVGELGCAYAD-GCFTAEQMILAAHARG 92 (387)
Q Consensus 43 a~q~al~~ll~~~-Gi~----P~~v~GHS~GE~aAa~~a-G~ls~eda~~lv~~Rg 92 (387)
++++.+.+.|.+. |.. +|.+.|-|.|-+.|+..+ +-++.++..++-...+
T Consensus 21 ~~~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~ 76 (308)
T cd07211 21 VVALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLG 76 (308)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4456666666664 432 599999999999998876 5699999888765444
No 66
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=65.53 E-value=7.5 Score=38.19 Aligned_cols=31 Identities=32% Similarity=0.296 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCCC-EEEecChhHHHHHHHhC
Q psy11500 47 GLVDILFALGITPD-GIVGHSVGELGCAYADG 77 (387)
Q Consensus 47 al~~ll~~~Gi~P~-~v~GHS~GE~aAa~~aG 77 (387)
.+.+++.++|+++. .++|||+|-..|..+|.
T Consensus 135 ~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~ 166 (379)
T PRK00175 135 AQARLLDALGITRLAAVVGGSMGGMQALEWAI 166 (379)
T ss_pred HHHHHHHHhCCCCceEEEEECHHHHHHHHHHH
Confidence 35677888999985 89999999988876653
No 67
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=65.03 E-value=19 Score=35.01 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=32.1
Q ss_pred CCCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHHHHH
Q psy11500 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGK 93 (387)
Q Consensus 56 Gi~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~ 93 (387)
+...|.+.|-|.|-+.|+..+--+|.++...+...++.
T Consensus 39 ~d~FDlIaGTStGgIIAa~la~g~s~~ei~~~y~~~~~ 76 (344)
T cd07217 39 GDYFDFVGGTSTGSIIAACIALGMSVTDLLSFYTLNGV 76 (344)
T ss_pred cccccEEEEecHHHHHHHHHHcCCCHHHHHHHHHhhhh
Confidence 45579999999999999988888999999988766544
No 68
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=63.78 E-value=8.9 Score=38.01 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCCC-EEEecChhHHHHHHHh
Q psy11500 46 IGLVDILFALGITPD-GIVGHSVGELGCAYAD 76 (387)
Q Consensus 46 ~al~~ll~~~Gi~P~-~v~GHS~GE~aAa~~a 76 (387)
-++.+++.++||+.- +++|||+|-..|...|
T Consensus 148 ~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a 179 (389)
T PRK06765 148 RVQKELIKSLGIARLHAVMGPSMGGMQAQEWA 179 (389)
T ss_pred HHHHHHHHHcCCCCceEEEEECHHHHHHHHHH
Confidence 345677888999876 5999999988886544
No 69
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=63.77 E-value=9 Score=33.58 Aligned_cols=30 Identities=33% Similarity=0.364 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+..+++..|++.-.++|||+|-..++..+
T Consensus 33 ~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a 62 (230)
T PF00561_consen 33 DLEALREALGIKKINLVGHSMGGMLALEYA 62 (230)
T ss_dssp HHHHHHHHHTTSSEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCChHHHHHHH
Confidence 355666779999999999999988776544
No 70
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=63.44 E-value=7.9 Score=33.78 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
-+..++...|+.+-.++|||+|.+.+..++
T Consensus 77 ~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~ 106 (282)
T COG0596 77 DLAALLDALGLEKVVLVGHSMGGAVALALA 106 (282)
T ss_pred HHHHHHHHhCCCceEEEEecccHHHHHHHH
Confidence 355666779998899999999976666544
No 71
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=62.33 E-value=11 Score=32.94 Aligned_cols=31 Identities=35% Similarity=0.323 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhCc
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADGC 78 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ 78 (387)
+..+++.++.++-.++|||+|-..|+.++..
T Consensus 60 ~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~ 90 (251)
T TIGR03695 60 LATLLDQLGIEPFFLVGYSMGGRIALYYALQ 90 (251)
T ss_pred HHHHHHHcCCCeEEEEEeccHHHHHHHHHHh
Confidence 3345566788899999999999888766643
No 72
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=61.25 E-value=10 Score=37.76 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=22.6
Q ss_pred HHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 50 DILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 50 ~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+...|+++-.++|||+|-+.|+.++
T Consensus 168 ~~~~~l~~~~~~lvGhS~GG~la~~~a 194 (402)
T PLN02894 168 EWRKAKNLSNFILLGHSFGGYVAAKYA 194 (402)
T ss_pred HHHHHcCCCCeEEEEECHHHHHHHHHH
Confidence 555567999999999999999988765
No 73
>PRK11460 putative hydrolase; Provisional
Probab=59.96 E-value=1.3e+02 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHcCCCCC--EEEecChhHHHHHHH
Q psy11500 53 FALGITPD--GIVGHSVGELGCAYA 75 (387)
Q Consensus 53 ~~~Gi~P~--~v~GHS~GE~aAa~~ 75 (387)
...|+.++ .++|||+|-..|+.+
T Consensus 96 ~~~~~~~~~i~l~GfS~Gg~~al~~ 120 (232)
T PRK11460 96 QQSGVGASATALIGFSQGAIMALEA 120 (232)
T ss_pred HhcCCChhhEEEEEECHHHHHHHHH
Confidence 34688665 889999999888754
No 74
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=59.94 E-value=10 Score=33.73 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+.+.++..++++-.++|||+|-..|..++.
T Consensus 70 ~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~ 99 (257)
T TIGR03611 70 VLQLLDALNIERFHFVGHALGGLIGLQLAL 99 (257)
T ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHH
Confidence 456667788888899999999999887764
No 75
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=58.38 E-value=15 Score=39.51 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=41.7
Q ss_pred cEEEEEcCCCcCcccCcC-CchhHHhhcCCC------CcchhHHHHHHHHHHHHHH---HcCCCCCEEEecChhHHHHHH
Q psy11500 5 KYEVVISGVGGVFPECHS-FHEFRELLFSGK------SGVTVDNRRWPIGLVDILF---ALGITPDGIVGHSVGELGCAY 74 (387)
Q Consensus 5 ~v~f~F~GqGsq~~~m~~-~~~l~~~l~~~~------~~~q~ai~a~q~al~~ll~---~~Gi~P~~v~GHS~GE~aAa~ 74 (387)
+++.|+.|-||--.-|.. ...+.+++.... +......-++=..+.+.|. +.++.+|.+.|.|.|-+.|+.
T Consensus 3 RlalVl~GG~slA~y~~GV~~ei~~l~~~~~~~~~~~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~ 82 (739)
T TIGR03607 3 RLALVMYGGVSLAVYMHGVTKEINRLVRASRAYHGYPDEASAGTEAVYGALLELLGAHLRLRVRVDVISGTSAGGINGVL 82 (739)
T ss_pred eEEEEecCcHHHHHHHHHHHHHHHHHhhhhcccccccccccccchhHHHHHHHHhhhhhccCCCCceEEeeCHHHHHHHH
Confidence 689999999985444411 112222222111 1111111122233445554 568999999999999998887
Q ss_pred HhC
Q psy11500 75 ADG 77 (387)
Q Consensus 75 ~aG 77 (387)
.|.
T Consensus 83 lA~ 85 (739)
T TIGR03607 83 LAY 85 (739)
T ss_pred HHc
Confidence 775
No 76
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=56.54 E-value=13 Score=34.67 Aligned_cols=30 Identities=37% Similarity=0.377 Sum_probs=23.4
Q ss_pred HHHHHHHHcC-CCCCEEEecChhHHHHHHHh
Q psy11500 47 GLVDILFALG-ITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 47 al~~ll~~~G-i~P~~v~GHS~GE~aAa~~a 76 (387)
.+.+++++.+ .++-.++|||+|-+.+..++
T Consensus 75 ~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a 105 (273)
T PLN02211 75 PLIDFLSSLPENEKVILVGHSAGGLSVTQAI 105 (273)
T ss_pred HHHHHHHhcCCCCCEEEEEECchHHHHHHHH
Confidence 3556677764 58889999999999887665
No 77
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=56.52 E-value=16 Score=33.20 Aligned_cols=29 Identities=31% Similarity=0.229 Sum_probs=20.5
Q ss_pred HHHHHHHHc-----CCCCCEEEecChhHHHHHHH
Q psy11500 47 GLVDILFAL-----GITPDGIVGHSVGELGCAYA 75 (387)
Q Consensus 47 al~~ll~~~-----Gi~P~~v~GHS~GE~aAa~~ 75 (387)
++-+++..+ +-++-.++|||+|-+.|-.+
T Consensus 69 ~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~ 102 (225)
T PF07819_consen 69 AIKYILELYKSNRPPPRSVILVGHSMGGLVARSA 102 (225)
T ss_pred HHHHHHHhhhhccCCCCceEEEEEchhhHHHHHH
Confidence 444455444 56778999999999887544
No 78
>PRK06489 hypothetical protein; Provisional
Probab=55.44 E-value=13 Score=36.07 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=20.2
Q ss_pred HHHcCCCCC-EEEecChhHHHHHHHh
Q psy11500 52 LFALGITPD-GIVGHSVGELGCAYAD 76 (387)
Q Consensus 52 l~~~Gi~P~-~v~GHS~GE~aAa~~a 76 (387)
...+|+++. .++|||+|-+.|+..+
T Consensus 147 ~~~lgi~~~~~lvG~SmGG~vAl~~A 172 (360)
T PRK06489 147 TEGLGVKHLRLILGTSMGGMHAWMWG 172 (360)
T ss_pred HHhcCCCceeEEEEECHHHHHHHHHH
Confidence 356899876 4899999999988765
No 79
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=55.10 E-value=15 Score=32.12 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=19.9
Q ss_pred HHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 50 DILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 50 ~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+.+..-.+-.++|||+|-+.|+.++
T Consensus 57 ~~~~~~~~~~~~lvG~S~Gg~~a~~~a 83 (245)
T TIGR01738 57 EAIAAQAPDPAIWLGWSLGGLVALHIA 83 (245)
T ss_pred HHHHHhCCCCeEEEEEcHHHHHHHHHH
Confidence 334444447889999999999887766
No 80
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=53.73 E-value=15 Score=37.08 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+-++++..|.+|-.++|||+|-+.+.+.+.
T Consensus 152 Ie~~~~~~g~~kV~LVGHSMGGlva~~fl~ 181 (440)
T PLN02733 152 LETVYKASGGKKVNIISHSMGGLLVKCFMS 181 (440)
T ss_pred HHHHHHHcCCCCEEEEEECHhHHHHHHHHH
Confidence 444556689999999999999999887653
No 81
>PRK03204 haloalkane dehalogenase; Provisional
Probab=53.50 E-value=15 Score=34.37 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=22.8
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+++..+|+++-.++|||+|-..|...+
T Consensus 91 ~~~~~~~~~~~~~~lvG~S~Gg~va~~~a 119 (286)
T PRK03204 91 IGEFVDHLGLDRYLSMGQDWGGPISMAVA 119 (286)
T ss_pred HHHHHHHhCCCCEEEEEECccHHHHHHHH
Confidence 45667778999999999999988765433
No 82
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=52.08 E-value=17 Score=34.28 Aligned_cols=30 Identities=20% Similarity=0.054 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
+..++..+|+++-.++|||+|-+.|+..+.
T Consensus 85 l~~l~~~l~~~~~~lvG~S~GG~ia~~~a~ 114 (306)
T TIGR01249 85 IEKLREKLGIKNWLVFGGSWGSTLALAYAQ 114 (306)
T ss_pred HHHHHHHcCCCCEEEEEECHHHHHHHHHHH
Confidence 445666789988899999999988876654
No 83
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=51.03 E-value=21 Score=29.10 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+.+++...+-.-=.+.|||+|--.|..++
T Consensus 53 ~l~~~~~~~~~~~i~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 53 ALKELVEKYPDYSIVITGHSLGGALASLAA 82 (140)
T ss_dssp HHHHHHHHSTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHhcccCccchhhccchHHHHHHHHH
Confidence 344544445433346689999987776554
No 84
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=49.04 E-value=15 Score=31.23 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=24.8
Q ss_pred HHHHHHHHH-HHcCCCCCEEEecChhHHHHHHHh
Q psy11500 44 WPIGLVDIL-FALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 44 ~q~al~~ll-~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+.+..+.| ...+..+|.+.|-|.|-+.|++.+
T Consensus 12 ~~~G~l~~L~~~~~~~~d~i~GtS~Gal~a~~~~ 45 (204)
T PF01734_consen 12 YQAGVLKALGQGLGERFDVISGTSAGALNAALLA 45 (204)
T ss_dssp CCHHHHHHHCCTGCCT-SEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCCccEEEEcChhhhhHHHHH
Confidence 345566667 668899999999999999995543
No 85
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=47.00 E-value=25 Score=30.99 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 50 DILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 50 ~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+++.+.+-....++|+|+|-+-|.+.|
T Consensus 51 ~~i~~~~~~~~~liGSSlGG~~A~~La 77 (187)
T PF05728_consen 51 QLIEELKPENVVLIGSSLGGFYATYLA 77 (187)
T ss_pred HHHHhCCCCCeEEEEEChHHHHHHHHH
Confidence 444554444469999999999998864
No 86
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=46.83 E-value=15 Score=31.78 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=32.6
Q ss_pred EEEEcCCCcCcccCcCCchhHHhhcCC-----CCcchhHHHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHH
Q psy11500 7 EVVISGVGGVFPECHSFHEFRELLFSG-----KSGVTVDNRRWPIGLVDILFALGITPDGIVGHSVGELGCAYA 75 (387)
Q Consensus 7 ~f~F~GqGsq~~~m~~~~~l~~~l~~~-----~~~~q~ai~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~ 75 (387)
+++.+|-|+.-++. =++.+.+.+... +...+|.+-.-+-+|-+.+... =+|.++||||+|-++++..
T Consensus 1 v~IvhG~~~s~~~H-W~~wl~~~l~~~~~V~~~~~~~P~~~~W~~~l~~~i~~~-~~~~ilVaHSLGc~~~l~~ 72 (171)
T PF06821_consen 1 VLIVHGYGGSPPDH-WQPWLERQLENSVRVEQPDWDNPDLDEWVQALDQAIDAI-DEPTILVAHSLGCLTALRW 72 (171)
T ss_dssp EEEE--TTSSTTTS-THHHHHHHHTTSEEEEEC--TS--HHHHHHHHHHCCHC--TTTEEEEEETHHHHHHHHH
T ss_pred CEEeCCCCCCCccH-HHHHHHHhCCCCeEEeccccCCCCHHHHHHHHHHHHhhc-CCCeEEEEeCHHHHHHHHH
Confidence 46778877654433 122233333221 1113455544444554444432 2556999999999988753
No 87
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=46.65 E-value=20 Score=36.59 Aligned_cols=27 Identities=22% Similarity=0.189 Sum_probs=22.9
Q ss_pred HHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 50 DILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 50 ~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.++...|+++-.++|||+|-+.|...+
T Consensus 266 ~ll~~lg~~k~~LVGhSmGG~iAl~~A 292 (481)
T PLN03087 266 SVLERYKVKSFHIVAHSLGCILALALA 292 (481)
T ss_pred HHHHHcCCCCEEEEEECHHHHHHHHHH
Confidence 356778999999999999999887655
No 88
>KOG4409|consensus
Probab=46.30 E-value=21 Score=34.56 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=22.2
Q ss_pred HHHHHH-cCCCCCEEEecChhHHHHHHHh
Q psy11500 49 VDILFA-LGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 49 ~~ll~~-~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+.|+. .||.==.|+|||+|-|-|+.-|
T Consensus 150 iE~WR~~~~L~KmilvGHSfGGYLaa~YA 178 (365)
T KOG4409|consen 150 IEQWRKKMGLEKMILVGHSFGGYLAAKYA 178 (365)
T ss_pred HHHHHHHcCCcceeEeeccchHHHHHHHH
Confidence 366765 7898889999999998886543
No 89
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=45.81 E-value=23 Score=32.10 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=20.6
Q ss_pred HHcCCCCC--EEEecChhHHHHHHHh
Q psy11500 53 FALGITPD--GIVGHSVGELGCAYAD 76 (387)
Q Consensus 53 ~~~Gi~P~--~v~GHS~GE~aAa~~a 76 (387)
+.+.+.++ +++|||+|-+.|++++
T Consensus 108 ~~~~~~~~~~~i~G~S~GG~~Al~~~ 133 (251)
T PF00756_consen 108 ANYRTDPDRRAIAGHSMGGYGALYLA 133 (251)
T ss_dssp HHSSEEECCEEEEEETHHHHHHHHHH
T ss_pred HhcccccceeEEeccCCCcHHHHHHH
Confidence 34888888 9999999999998765
No 90
>PRK10749 lysophospholipase L2; Provisional
Probab=45.80 E-value=23 Score=33.89 Aligned_cols=22 Identities=14% Similarity=-0.112 Sum_probs=18.1
Q ss_pred cCCCCCEEEecChhHHHHHHHh
Q psy11500 55 LGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 55 ~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+..|-.++|||+|-..|+..+
T Consensus 128 ~~~~~~~l~GhSmGG~ia~~~a 149 (330)
T PRK10749 128 GPYRKRYALAHSMGGAILTLFL 149 (330)
T ss_pred CCCCCeEEEEEcHHHHHHHHHH
Confidence 4788999999999998886543
No 91
>PRK10985 putative hydrolase; Provisional
Probab=43.74 E-value=28 Score=33.19 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHcCCCCCEEEecChhHHHHHH
Q psy11500 53 FALGITPDGIVGHSVGELGCAY 74 (387)
Q Consensus 53 ~~~Gi~P~~v~GHS~GE~aAa~ 74 (387)
+..+..|-.++|||+|-..++.
T Consensus 126 ~~~~~~~~~~vG~S~GG~i~~~ 147 (324)
T PRK10985 126 REFGHVPTAAVGYSLGGNMLAC 147 (324)
T ss_pred HhCCCCCEEEEEecchHHHHHH
Confidence 3478889999999999975443
No 92
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=42.97 E-value=91 Score=28.66 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCEEEecChhHHHHHHHhCc-CCHHHHHHHHHHHH
Q psy11500 59 PDGIVGHSVGELGCAYADGC-FTAEQMILAAHARG 92 (387)
Q Consensus 59 P~~v~GHS~GE~aAa~~aG~-ls~eda~~lv~~Rg 92 (387)
.|.++|-|.|-+.|+..+-. .+.++..++....+
T Consensus 35 fd~i~GtS~G~iia~~l~~~~~~~~~~~~~~~~~~ 69 (258)
T cd07199 35 FDLIAGTSTGGIIALGLALGRYSAEELVELYEELG 69 (258)
T ss_pred cceeeeccHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 79999999999888776655 89999998765544
No 93
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=42.48 E-value=24 Score=32.99 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=16.8
Q ss_pred CCCCEEEecChhHHHHHHHhC
Q psy11500 57 ITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 57 i~P~~v~GHS~GE~aAa~~aG 77 (387)
.+.-.++|||+|-..|..++.
T Consensus 111 ~~~i~lIGhSlGa~vAg~~a~ 131 (275)
T cd00707 111 LENVHLIGHSLGAHVAGFAGK 131 (275)
T ss_pred hHHEEEEEecHHHHHHHHHHH
Confidence 345689999999999988753
No 94
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=42.30 E-value=25 Score=31.62 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=31.8
Q ss_pred EEcCCCcCcccCcCCchhHHhhcCCCCcchhHHHHHHHHHHH-------HHHHc-CCCCCEEEecChhHHHH
Q psy11500 9 VISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGLVD-------ILFAL-GITPDGIVGHSVGELGC 72 (387)
Q Consensus 9 ~F~GqGsq~~~m~~~~~l~~~l~~~~~~~q~ai~a~q~al~~-------ll~~~-Gi~P~~v~GHS~GE~aA 72 (387)
.|.++|..|..+.+.-.+...+....... --+.++|..+ .|+.+ +=+|=+++|||.|-...
T Consensus 41 ~F~~~~~vfAP~YRQatl~~~~~~~~~~~---~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l 109 (207)
T PF11288_consen 41 AFNGVCNVFAPRYRQATLYAFLDTDREDA---EKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHL 109 (207)
T ss_pred hhhcCCccccChhhcchhhhhhccCcchh---HHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHH
Confidence 35555555555554445555442222221 1223333333 33332 23899999999997654
No 95
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=42.15 E-value=1e+02 Score=29.96 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCCCCEEEecChhHHHHHHHhC
Q psy11500 46 IGLVDILFALGITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 46 ~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
-+|.+.+++.|..|-.+.|-|+|-.-|+.+|.
T Consensus 163 ~~Ll~Wl~~~G~~~~g~~G~SmGG~~A~laa~ 194 (348)
T PF09752_consen 163 RALLHWLEREGYGPLGLTGISMGGHMAALAAS 194 (348)
T ss_pred HHHHHHHHhcCCCceEEEEechhHhhHHhhhh
Confidence 45778888889999999999999988876554
No 96
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=41.99 E-value=32 Score=31.97 Aligned_cols=29 Identities=7% Similarity=-0.103 Sum_probs=20.2
Q ss_pred HHHHHHHc--CCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFAL--GITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~--Gi~P~~v~GHS~GE~aAa~~a 76 (387)
..+.+++. |++.-.++|||+|-+.|+..+
T Consensus 88 ~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 88 AIDAFREAAPHLRRIVAWGLCDAASAALLYA 118 (274)
T ss_pred HHHHHHhhCCCCCcEEEEEECHHHHHHHHHh
Confidence 34445443 776678899999998877553
No 97
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=41.60 E-value=29 Score=31.18 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=14.4
Q ss_pred CCCEEEecChhHHHHHHHh
Q psy11500 58 TPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 58 ~P~~v~GHS~GE~aAa~~a 76 (387)
.+=.+.|||+|--.|..++
T Consensus 128 ~~i~vtGHSLGGaiA~l~a 146 (229)
T cd00519 128 YKIIVTGHSLGGALASLLA 146 (229)
T ss_pred ceEEEEccCHHHHHHHHHH
Confidence 3447899999988776654
No 98
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=40.97 E-value=30 Score=34.91 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.5
Q ss_pred CCCCCEEEecChhHHHHHHHh
Q psy11500 56 GITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 56 Gi~P~~v~GHS~GE~aAa~~a 76 (387)
++..-.++|||+|--.|..++
T Consensus 117 ~l~~VhLIGHSLGAhIAg~ag 137 (442)
T TIGR03230 117 PWDNVHLLGYSLGAHVAGIAG 137 (442)
T ss_pred CCCcEEEEEECHHHHHHHHHH
Confidence 356778999999999998765
No 99
>PRK10566 esterase; Provisional
Probab=40.44 E-value=33 Score=30.87 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=18.5
Q ss_pred HHHHHcC-CCC--CEEEecChhHHHHHHHh
Q psy11500 50 DILFALG-ITP--DGIVGHSVGELGCAYAD 76 (387)
Q Consensus 50 ~ll~~~G-i~P--~~v~GHS~GE~aAa~~a 76 (387)
+.++..+ +.+ -.++|||+|-+.|+.++
T Consensus 96 ~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~ 125 (249)
T PRK10566 96 AAIREEGWLLDDRLAVGGASMGGMTALGIM 125 (249)
T ss_pred HHHHhcCCcCccceeEEeecccHHHHHHHH
Confidence 3334443 444 58999999999998654
No 100
>PHA02857 monoglyceride lipase; Provisional
Probab=39.41 E-value=35 Score=31.29 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.6
Q ss_pred HcCCCCCEEEecChhHHHHHHHh
Q psy11500 54 ALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 54 ~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+++..|-.++|||+|-..|...+
T Consensus 93 ~~~~~~~~lvG~S~GG~ia~~~a 115 (276)
T PHA02857 93 TYPGVPVFLLGHSMGATISILAA 115 (276)
T ss_pred hCCCCCEEEEEcCchHHHHHHHH
Confidence 35667889999999999887655
No 101
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=39.06 E-value=1.2e+02 Score=26.80 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCcCcccCcCCchhHHhhcCCCC-------------cchhHHHHHHH--HHHHHHHHcCCCCCEEEecChh
Q psy11500 4 EKYEVVISGVGGVFPECHSFHEFRELLFSGKS-------------GVTVDNRRWPI--GLVDILFALGITPDGIVGHSVG 68 (387)
Q Consensus 4 ~~v~f~F~GqGsq~~~m~~~~~l~~~l~~~~~-------------~~q~ai~a~q~--al~~ll~~~Gi~P~~v~GHS~G 68 (387)
..++++|+|.|..- ++ ...+.+.+.+... .-.|.-++--+ .+-...+.||.+--+++|+|+|
T Consensus 2 Dt~~v~~SGDgGw~-~~--d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFG 78 (192)
T PF06057_consen 2 DTLAVFFSGDGGWR-DL--DKQIAEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFG 78 (192)
T ss_pred CEEEEEEeCCCCch-hh--hHHHHHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCC
Confidence 36899999999753 43 1112222221111 11233333333 3445667799999999999999
Q ss_pred HHHHHHHhCcCCHH
Q psy11500 69 ELGCAYADGCFTAE 82 (387)
Q Consensus 69 E~aAa~~aG~ls~e 82 (387)
.=..-.+...|...
T Consensus 79 ADvlP~~~nrLp~~ 92 (192)
T PF06057_consen 79 ADVLPFIYNRLPAA 92 (192)
T ss_pred chhHHHHHhhCCHH
Confidence 86665555666554
No 102
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=38.78 E-value=33 Score=33.41 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=22.8
Q ss_pred HHHHHHHH--cCCCCCEEEecChhHHHHHHH
Q psy11500 47 GLVDILFA--LGITPDGIVGHSVGELGCAYA 75 (387)
Q Consensus 47 al~~ll~~--~Gi~P~~v~GHS~GE~aAa~~ 75 (387)
.|++.|.+ .|-+|-.++|||+|--...+|
T Consensus 207 ~LA~~L~~~~~G~RpVtLvG~SLGarvI~~c 237 (345)
T PF05277_consen 207 VLADALLSRNQGERPVTLVGHSLGARVIYYC 237 (345)
T ss_pred HHHHHHHHhcCCCCceEEEeecccHHHHHHH
Confidence 36677765 599999999999998776554
No 103
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=38.59 E-value=59 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.7
Q ss_pred EEeCCHHHHHHHHHHHHhCCceEEE
Q psy11500 137 TLSGPSADVEALVESLVAQGIFARA 161 (387)
Q Consensus 137 visG~~~~l~~l~~~l~~~gi~~~~ 161 (387)
-+.|+.++++++.+.|+++++....
T Consensus 51 ~l~g~~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 51 ELPGDDEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp EEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred EEECCHHHHHHHHHHHHHCCCeEEE
Confidence 4679999999999999999987654
No 104
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=38.59 E-value=75 Score=30.89 Aligned_cols=71 Identities=18% Similarity=0.093 Sum_probs=44.7
Q ss_pred CcEEEEEcCCCcCccc--Cc--CCchhHHhhcC---------CC-------CcchhHHHHHHHHHHHHHHH--cCCCCCE
Q psy11500 4 EKYEVVISGVGGVFPE--CH--SFHEFRELLFS---------GK-------SGVTVDNRRWPIGLVDILFA--LGITPDG 61 (387)
Q Consensus 4 ~~v~f~F~GqGsq~~~--m~--~~~~l~~~l~~---------~~-------~~~q~ai~a~q~al~~ll~~--~Gi~P~~ 61 (387)
.|-..++-|.|..|-. |. .+..+.+.... -+ ....-.++.---|+++.|++ .|++|.-
T Consensus 137 ~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~s~~dLv~~~~a~v~yL~d~~~G~ka~~ 216 (365)
T PF05677_consen 137 QRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPPSRKDLVKDYQACVRYLRDEEQGPKAKN 216 (365)
T ss_pred CcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCCCHHHHHHHHHHHHHHHHhcccCCChhe
Confidence 4677788888888777 41 22233332221 11 11134566666788999986 7999985
Q ss_pred E--EecChhHHHHHH
Q psy11500 62 I--VGHSVGELGCAY 74 (387)
Q Consensus 62 v--~GHS~GE~aAa~ 74 (387)
+ -|||+|--.++.
T Consensus 217 Ii~yG~SLGG~Vqa~ 231 (365)
T PF05677_consen 217 IILYGHSLGGGVQAE 231 (365)
T ss_pred EEEeeccccHHHHHH
Confidence 5 499999877654
No 105
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=38.53 E-value=92 Score=29.62 Aligned_cols=35 Identities=29% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCEEEecChhHHHHHHHhC-cCCHHHHHHHHHHHHH
Q psy11500 59 PDGIVGHSVGELGCAYADG-CFTAEQMILAAHARGK 93 (387)
Q Consensus 59 P~~v~GHS~GE~aAa~~aG-~ls~eda~~lv~~Rg~ 93 (387)
.|.+.|-|.|-+.|+..+- -+|.+|++.+-...+.
T Consensus 43 fDli~GTStGgiiA~~l~~~~~t~~e~~~~y~~~~~ 78 (309)
T cd07216 43 FDLIGGTSTGGLIAIMLGRLRMTVDECIDAYTRLAK 78 (309)
T ss_pred cCeeeeccHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 5999999999999998873 6899999887666554
No 106
>KOG2564|consensus
Probab=37.06 E-value=26 Score=33.00 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=16.5
Q ss_pred CCCCEEEecChhHHHHHHHhC
Q psy11500 57 ITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 57 i~P~~v~GHS~GE~aAa~~aG 77 (387)
+.|-+++|||+|--.|++.|-
T Consensus 145 ~~~iilVGHSmGGaIav~~a~ 165 (343)
T KOG2564|consen 145 PPQIILVGHSMGGAIAVHTAA 165 (343)
T ss_pred CCceEEEeccccchhhhhhhh
Confidence 456688999999888877663
No 107
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=36.40 E-value=43 Score=29.70 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=19.2
Q ss_pred HHHHHHcCCC-CCEEEecChhHHHHHHHh
Q psy11500 49 VDILFALGIT-PDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 49 ~~ll~~~Gi~-P~~v~GHS~GE~aAa~~a 76 (387)
++.++...-+ |-.++|||+|-+.|.-+|
T Consensus 56 ~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A 84 (229)
T PF00975_consen 56 AEAIRARQPEGPYVLAGWSFGGILAFEMA 84 (229)
T ss_dssp HHHHHHHTSSSSEEEEEETHHHHHHHHHH
T ss_pred HHHhhhhCCCCCeeehccCccHHHHHHHH
Confidence 3444543333 889999999988876443
No 108
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=35.71 E-value=32 Score=33.17 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCCEEEecChhHHHHHHHh
Q psy11500 58 TPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 58 ~P~~v~GHS~GE~aAa~~a 76 (387)
.|-.++|||+|-..|+.++
T Consensus 162 ~~~~LvGhSmGG~val~~a 180 (349)
T PLN02385 162 LPSFLFGQSMGGAVALKVH 180 (349)
T ss_pred CCEEEEEeccchHHHHHHH
Confidence 3679999999998886554
No 109
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=33.85 E-value=49 Score=31.91 Aligned_cols=29 Identities=10% Similarity=-0.057 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+-.+.+..|.++-.++|||+|-..++..+
T Consensus 126 v~~l~~~~~~~~i~lvGhS~GG~i~~~~~ 154 (350)
T TIGR01836 126 VDYICRTSKLDQISLLGICQGGTFSLCYA 154 (350)
T ss_pred HHHHHHHhCCCcccEEEECHHHHHHHHHH
Confidence 33445567999999999999998876543
No 110
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=33.45 E-value=54 Score=27.29 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=15.1
Q ss_pred CCCCCEEEecChhHHHHHHHh
Q psy11500 56 GITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 56 Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.-..=.++|||+|--.|..++
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a 46 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAG 46 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHH
Confidence 334447899999987776655
No 111
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=33.18 E-value=28 Score=32.46 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=13.8
Q ss_pred CCCEEEecChhHHHHHH
Q psy11500 58 TPDGIVGHSVGELGCAY 74 (387)
Q Consensus 58 ~P~~v~GHS~GE~aAa~ 74 (387)
.+-.++|||+|-|-++-
T Consensus 84 ~~liLiGHSIGayi~le 100 (266)
T PF10230_consen 84 VKLILIGHSIGAYIALE 100 (266)
T ss_pred CcEEEEeCcHHHHHHHH
Confidence 45588999999998863
No 112
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.49 E-value=51 Score=30.48 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCCCCC
Q psy11500 278 KDGVKFILNSIGKLYLNGLDLNLAPLYPE 306 (387)
Q Consensus 278 ~~~~~~l~~~l~~L~~~G~~v~~~~~~~~ 306 (387)
+.+-.+...++.++|..|+-+||+++-|-
T Consensus 181 ~~dd~t~~Raier~Y~lGv~PDWWKLePl 209 (310)
T COG3892 181 KSDDRTVPRAIERFYNLGVYPDWWKLEPL 209 (310)
T ss_pred CcchhHHHHHHHHHHHcCCCcccccCCCC
Confidence 45567899999999999999999998664
No 113
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=32.46 E-value=39 Score=32.98 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCCCEEEecChhHHHHHHHhCcCCHHHHHHHHHH
Q psy11500 57 ITPDGIVGHSVGELGCAYADGCFTAEQMILAAHA 90 (387)
Q Consensus 57 i~P~~v~GHS~GE~aAa~~aG~ls~eda~~lv~~ 90 (387)
..+-.++|||+|-++++..+|+=..-+.+.-.|.
T Consensus 158 ~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~ 191 (365)
T COG4188 158 PQRVGVLGHSFGGYTAMELAGAELDAEALLQHCE 191 (365)
T ss_pred ccceEEEecccccHHHHHhccccccHHHHHHHhh
Confidence 4567899999999999999998766555554443
No 114
>PLN02442 S-formylglutathione hydrolase
Probab=32.25 E-value=51 Score=30.86 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 51 ILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 51 ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
.+...+.+.-+++|||+|-+.|+.++
T Consensus 136 ~~~~~~~~~~~i~G~S~GG~~a~~~a 161 (283)
T PLN02442 136 NFDQLDTSRASIFGHSMGGHGALTIY 161 (283)
T ss_pred HHHhcCCCceEEEEEChhHHHHHHHH
Confidence 33445666678999999999887654
No 115
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=32.04 E-value=44 Score=32.32 Aligned_cols=24 Identities=29% Similarity=0.720 Sum_probs=17.0
Q ss_pred HcCCCCC--EEEecChhHHHHHHHhC
Q psy11500 54 ALGITPD--GIVGHSVGELGCAYADG 77 (387)
Q Consensus 54 ~~Gi~P~--~v~GHS~GE~aAa~~aG 77 (387)
..|+.++ -++|||+|.-.|.+++-
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~ 169 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGK 169 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHH
T ss_pred hcCCChhHEEEEeeccchhhhhhhhh
Confidence 6788887 57999999988887663
No 116
>PRK04940 hypothetical protein; Provisional
Probab=31.94 E-value=42 Score=29.41 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=17.1
Q ss_pred CCCCEEEecChhHHHHHHHh
Q psy11500 57 ITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 57 i~P~~v~GHS~GE~aAa~~a 76 (387)
.+|..++|+|+|-|=|-+.|
T Consensus 59 ~~~~~liGSSLGGyyA~~La 78 (180)
T PRK04940 59 DERPLICGVGLGGYWAERIG 78 (180)
T ss_pred CCCcEEEEeChHHHHHHHHH
Confidence 37899999999999887755
No 117
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=31.42 E-value=58 Score=32.16 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHHHH
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELGCA 73 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~aAa 73 (387)
-+.+++...|+++-.++|||+|-..|.
T Consensus 186 ~l~~~i~~l~~~~~~LvG~s~GG~ia~ 212 (383)
T PLN03084 186 SLESLIDELKSDKVSLVVQGYFSPPVV 212 (383)
T ss_pred HHHHHHHHhCCCCceEEEECHHHHHHH
Confidence 356778889999999999999965443
No 118
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=31.26 E-value=42 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHH---------HHHHhCcCCHHHHHHHHHH
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELG---------CAYADGCFTAEQMILAAHA 90 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~a---------Aa~~aG~ls~eda~~lv~~ 90 (387)
++..++..+|+ ++=+.|-+.|+++ .++..|..|+.||+++-..
T Consensus 44 av~~Ll~kY~l-~dP~~~~~~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~ 95 (162)
T PF09968_consen 44 AVKALLEKYGL-EDPVEGDPVGVFTNPELQELYNQLVEQGSKSLEDALKVGAL 95 (162)
T ss_dssp HHHHHHHHTT----S-SS-STT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCCccCCCCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHH
Confidence 46678888998 4666788888866 6788999999999997543
No 119
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=30.73 E-value=41 Score=27.09 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=18.0
Q ss_pred CCCCCEEEecChhHHHHHHHhC
Q psy11500 56 GITPDGIVGHSVGELGCAYADG 77 (387)
Q Consensus 56 Gi~P~~v~GHS~GE~aAa~~aG 77 (387)
...+-.++|||+|-..|+.++.
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAA 80 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHH
T ss_pred CCCcEEEEEEccCcHHHHHHhh
Confidence 5567789999999998887664
No 120
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=30.48 E-value=78 Score=23.14 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=27.8
Q ss_pred CEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhC
Q psy11500 124 TIEIACHNASDSCTLSGPSADVEALVESLVAQ 155 (387)
Q Consensus 124 ~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~ 155 (387)
.+.|.....-++++|.|+++.++.+.+.+++-
T Consensus 45 ~~~i~~d~~tNsliv~g~~~~~~~i~~li~~L 76 (82)
T PF03958_consen 45 SGRIVADERTNSLIVRGTPEDLEQIRELIKQL 76 (82)
T ss_dssp TTEEEEECTTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 57888999999999999999999988877653
No 121
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=30.46 E-value=60 Score=30.79 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.3
Q ss_pred CCCEEEecChhHHHHHHHh
Q psy11500 58 TPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 58 ~P~~v~GHS~GE~aAa~~a 76 (387)
.|-.++|||+|-..|+.++
T Consensus 134 ~~i~l~GhSmGG~ia~~~a 152 (330)
T PLN02298 134 LPRFLYGESMGGAICLLIH 152 (330)
T ss_pred CCEEEEEecchhHHHHHHH
Confidence 3679999999998886544
No 122
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=30.34 E-value=1.1e+02 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=32.6
Q ss_pred CEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhCCceE
Q psy11500 124 TIEIACHNASDSCTLSGPSADVEALVESLVAQGIFA 159 (387)
Q Consensus 124 ~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~gi~~ 159 (387)
.++-|.-.+++-+|++|+...+.+.+..|+++|..+
T Consensus 72 ~~~yalAH~~~iIv~~~~~~~~~~~K~wL~~nGa~a 107 (113)
T PF13117_consen 72 VVFYALAHSAKIIVLTGDGNLFFQYKNWLRKNGATA 107 (113)
T ss_pred eEeeeeeccccEEEEcCCHHHHHHHHHHHHHcCCce
Confidence 367788899999999999999999999999999864
No 123
>PRK05855 short chain dehydrogenase; Validated
Probab=30.21 E-value=67 Score=32.97 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=22.9
Q ss_pred HHHHHHHHcCC-CCCEEEecChhHHHHHHHhCc
Q psy11500 47 GLVDILFALGI-TPDGIVGHSVGELGCAYADGC 78 (387)
Q Consensus 47 al~~ll~~~Gi-~P~~v~GHS~GE~aAa~~aG~ 78 (387)
-+.++++..|+ +|-.++|||+|-+.|..++..
T Consensus 82 dl~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 82 DFAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred HHHHHHHHhCCCCcEEEEecChHHHHHHHHHhC
Confidence 35566777776 457899999999877655433
No 124
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=29.75 E-value=59 Score=30.22 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=29.3
Q ss_pred chhHHhhcCCCCc--chhHHHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHH
Q psy11500 24 HEFRELLFSGKSG--VTVDNRRWPIGLVDILFALGITPDGIVGHSVGELGCAY 74 (387)
Q Consensus 24 ~~l~~~l~~~~~~--~q~ai~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~ 74 (387)
.++..+.|++... ...-.--+.-+|..|=+.++|+=--+||||+|-+++.+
T Consensus 67 nPiIqV~F~~n~~~~~~~qa~wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~ 119 (255)
T PF06028_consen 67 NPIIQVNFEDNRNANYKKQAKWLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTY 119 (255)
T ss_dssp S-EEEEEESSTT-CHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHH
T ss_pred CCEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhcCCCEEeEEEECccHHHHHH
Confidence 3455555655543 12222233344545555689999999999999998865
No 125
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=29.63 E-value=24 Score=29.05 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=19.1
Q ss_pred ccccCCccCCeeeehhccchH-HHhhcc
Q psy11500 358 TNVNRHTLRGYVLTPDTSAQD-ETENLE 384 (387)
Q Consensus 358 ~~l~~H~v~g~~l~Paa~~~e-a~~A~~ 384 (387)
+|+++|- .|.+++||+..+| +++++.
T Consensus 38 ~~f~gHF-p~~Pv~PGvl~iE~~aQ~~~ 64 (138)
T PF07977_consen 38 PFFDGHF-PGDPVMPGVLLIEAMAQAAG 64 (138)
T ss_dssp GGGGCST-TTS--B-HHHHHHHHHHHHH
T ss_pred CEEEcCC-CCCCCCCeEhHHHHHHHHHH
Confidence 4899997 8999999999999 766654
No 126
>PLN02872 triacylglycerol lipase
Probab=29.07 E-value=98 Score=30.74 Aligned_cols=21 Identities=33% Similarity=0.154 Sum_probs=17.1
Q ss_pred CCCCCEEEecChhHHHHHHHh
Q psy11500 56 GITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 56 Gi~P~~v~GHS~GE~aAa~~a 76 (387)
..++-.++|||+|-+.+..++
T Consensus 158 ~~~~v~~VGhS~Gg~~~~~~~ 178 (395)
T PLN02872 158 TNSKIFIVGHSQGTIMSLAAL 178 (395)
T ss_pred cCCceEEEEECHHHHHHHHHh
Confidence 347889999999999887544
No 127
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=28.93 E-value=66 Score=29.86 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=20.1
Q ss_pred HHHHHH-cCC--CCCEEEecChhHHHHHHHh
Q psy11500 49 VDILFA-LGI--TPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 49 ~~ll~~-~Gi--~P~~v~GHS~GE~aAa~~a 76 (387)
..++.+ +++ +.-.++|||+|-+.|+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a 156 (275)
T TIGR02821 126 PALVAAQFPLDGERQGITGHSMGGHGALVIA 156 (275)
T ss_pred HHHHHhhCCCCCCceEEEEEChhHHHHHHHH
Confidence 344554 455 4578999999999988765
No 128
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=28.83 E-value=65 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCCCCCC
Q psy11500 279 DGVKFILNSIGKLYLNGLDLNLAPLYP 305 (387)
Q Consensus 279 ~~~~~l~~~l~~L~~~G~~v~~~~~~~ 305 (387)
.+-..+.+++.++|..|+.+||+++-+
T Consensus 191 ~~~~~~~~ai~r~Y~lGI~PDWWKLep 217 (311)
T PF09863_consen 191 VDDDTYARAIERFYNLGIKPDWWKLEP 217 (311)
T ss_pred CChHHHHHHHHHHHHcCCCCCeeccCC
Confidence 346789999999999999999998754
No 129
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.81 E-value=57 Score=30.00 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=12.4
Q ss_pred CCCEEEecChhHHHH
Q psy11500 58 TPDGIVGHSVGELGC 72 (387)
Q Consensus 58 ~P~~v~GHS~GE~aA 72 (387)
+|=++.|||+|-+-|
T Consensus 74 ~P~alfGHSmGa~lA 88 (244)
T COG3208 74 APFALFGHSMGAMLA 88 (244)
T ss_pred CCeeecccchhHHHH
Confidence 577999999997655
No 130
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=28.73 E-value=3.8e+02 Score=23.52 Aligned_cols=116 Identities=20% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCCC--EEEecChhHHHHHHHhCcCCHHHHHHHHHHHHHHhcccCCCCceEEEEe--CC-HHHHHHhhcCC
Q psy11500 48 LVDILFALGITPD--GIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIG--LG-YKQMKDMLADY 122 (387)
Q Consensus 48 l~~ll~~~Gi~P~--~v~GHS~GE~aAa~~aG~ls~eda~~lv~~Rg~~~~~~~~~~g~M~av~--~~-~~~~~~~l~~~ 122 (387)
+.+.+.+.|+.|+ ++.|.|.|-..|+..+ +.. ...-++.+++. +. ..+........
T Consensus 93 li~~~~~~~i~~~ri~l~GFSQGa~~al~~~------------------l~~-p~~~~gvv~lsG~~~~~~~~~~~~~~~ 153 (216)
T PF02230_consen 93 LIDEEVAYGIDPSRIFLGGFSQGAAMALYLA------------------LRY-PEPLAGVVALSGYLPPESELEDRPEAL 153 (216)
T ss_dssp HHHHHHHTT--GGGEEEEEETHHHHHHHHHH------------------HCT-SSTSSEEEEES---TTGCCCHCCHCCC
T ss_pred HHHHHHHcCCChhheehhhhhhHHHHHHHHH------------------HHc-CcCcCEEEEeecccccccccccccccc
Confidence 3344445677764 6789999999887654 111 22344545542 11 11111111121
Q ss_pred CCEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhCCceEEEcccCCcCCcccchhhHHHHHHHHHh
Q psy11500 123 PTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLK 186 (387)
Q Consensus 123 ~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~ 186 (387)
.++-|=...+...-|| +.+..++..+.|++.+........ +..-|+--.+ ....+.+.|+
T Consensus 154 ~~~pi~~~hG~~D~vv--p~~~~~~~~~~L~~~~~~v~~~~~-~g~gH~i~~~-~~~~~~~~l~ 213 (216)
T PF02230_consen 154 AKTPILIIHGDEDPVV--PFEWAEKTAEFLKAAGANVEFHEY-PGGGHEISPE-ELRDLREFLE 213 (216)
T ss_dssp CTS-EEEEEETT-SSS--THHHHHHHHHHHHCTT-GEEEEEE-TT-SSS--HH-HHHHHHHHHH
T ss_pred CCCcEEEEecCCCCcc--cHHHHHHHHHHHHhcCCCEEEEEc-CCCCCCCCHH-HHHHHHHHHh
Confidence 1111211122222222 455567788899998885555444 4456765433 3333444443
No 131
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=28.53 E-value=61 Score=30.14 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecChhHHHHHH
Q psy11500 42 RRWPIGLVDILFALGITPDGIVGHSVGELGCAY 74 (387)
Q Consensus 42 ~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~ 74 (387)
--+|-++-.|=.+++|.=--++|||+|-.+..+
T Consensus 120 ~wlk~~msyL~~~Y~i~k~n~VGhSmGg~~~~~ 152 (288)
T COG4814 120 KWLKKAMSYLQKHYNIPKFNAVGHSMGGLGLTY 152 (288)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeeccccHHHHH
Confidence 356778888888899988889999999887764
No 132
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=28.26 E-value=1.5e+02 Score=21.37 Aligned_cols=40 Identities=15% Similarity=0.484 Sum_probs=28.8
Q ss_pred CHHHHHHhhcC-CCCEEEEEe-eCC---CcEEEeCCHHHHHHHHH
Q psy11500 111 GYKQMKDMLAD-YPTIEIACH-NAS---DSCTLSGPSADVEALVE 150 (387)
Q Consensus 111 ~~~~~~~~l~~-~~~v~iA~~-Nsp---~~~visG~~~~l~~l~~ 150 (387)
+.+-+++++.+ +|.+.|..+ |+| -+++|+|+-+++.++..
T Consensus 10 DfEY~eEvIRNRyPelsi~si~d~~f~~~~i~i~GPle~l~~FM~ 54 (75)
T PF05798_consen 10 DFEYTEEVIRNRYPELSITSIQDSKFCSIQIVIEGPLEDLTRFMA 54 (75)
T ss_pred ehHhHHHHHHccCCceEEEEeecCCcceEEEEEeccHHHHHHHHH
Confidence 45666777764 678887654 444 46889999999988754
No 133
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=28.08 E-value=1.9e+02 Score=28.16 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCCEEEecChhHHHHHHHhC-------cCCHHHHHHHHHHHHH
Q psy11500 58 TPDGIVGHSVGELGCAYADG-------CFTAEQMILAAHARGK 93 (387)
Q Consensus 58 ~P~~v~GHS~GE~aAa~~aG-------~ls~eda~~lv~~Rg~ 93 (387)
.+|.+.|-|.|-+.|+..+- .++.++.+.+-..++.
T Consensus 43 ~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y~~~~~ 85 (349)
T cd07214 43 YFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFYLENGP 85 (349)
T ss_pred hCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHHHHhhH
Confidence 47999999999988876653 3788999888666654
No 134
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=27.22 E-value=45 Score=30.33 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=16.4
Q ss_pred CCEEEecChhHHHHHHHhCc
Q psy11500 59 PDGIVGHSVGELGCAYADGC 78 (387)
Q Consensus 59 P~~v~GHS~GE~aAa~~aG~ 78 (387)
+=.+.|||.|-.-|.|++-.
T Consensus 85 ~i~v~GHSkGGnLA~yaa~~ 104 (224)
T PF11187_consen 85 KIYVTGHSKGGNLAQYAAAN 104 (224)
T ss_pred CEEEEEechhhHHHHHHHHH
Confidence 46789999999988887743
No 135
>PRK10162 acetyl esterase; Provisional
Probab=27.07 E-value=2.2e+02 Score=26.99 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=19.4
Q ss_pred HHHHcCCCCC--EEEecChhHHHHHHHh
Q psy11500 51 ILFALGITPD--GIVGHSVGELGCAYAD 76 (387)
Q Consensus 51 ll~~~Gi~P~--~v~GHS~GE~aAa~~a 76 (387)
...++|+.|+ +++|||.|-.-|+.++
T Consensus 145 ~~~~~~~d~~~i~l~G~SaGG~la~~~a 172 (318)
T PRK10162 145 HAEDYGINMSRIGFAGDSAGAMLALASA 172 (318)
T ss_pred hHHHhCCChhHEEEEEECHHHHHHHHHH
Confidence 3445788765 8899999988776654
No 136
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=26.93 E-value=98 Score=27.30 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=18.3
Q ss_pred HHHcCCCC--CEEEecChhHHHHHHHh
Q psy11500 52 LFALGITP--DGIVGHSVGELGCAYAD 76 (387)
Q Consensus 52 l~~~Gi~P--~~v~GHS~GE~aAa~~a 76 (387)
....++.| -.++|||+|-+.|+.++
T Consensus 87 ~~~~~id~~~i~l~G~S~Gg~~a~~~a 113 (212)
T TIGR01840 87 KANYSIDPNRVYVTGLSAGGGMTAVLG 113 (212)
T ss_pred HHhcCcChhheEEEEECHHHHHHHHHH
Confidence 33467765 47899999998876654
No 137
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=26.54 E-value=64 Score=38.41 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+++...++++-.++|||+|-+.|...+
T Consensus 1435 l~~ll~~l~~~~v~LvGhSmGG~iAl~~A 1463 (1655)
T PLN02980 1435 LYKLIEHITPGKVTLVGYSMGARIALYMA 1463 (1655)
T ss_pred HHHHHHHhCCCCEEEEEECHHHHHHHHHH
Confidence 55667788999999999999999988765
No 138
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.73 E-value=3.4e+02 Score=23.28 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=38.1
Q ss_pred CceEEEEeCCHHHHHHhh----cCCCCEEEEEeeCCCcEEEeCCHHHHHHHHHHHHhCCceEEEccc
Q psy11500 102 DGKMAAIGLGYKQMKDML----ADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNV 164 (387)
Q Consensus 102 ~g~M~av~~~~~~~~~~l----~~~~~v~iA~~Nsp~~~visG~~~~l~~l~~~l~~~gi~~~~L~v 164 (387)
...+..+|.+++.+++.. ..++++.|+.+..|-- +.++.+++.+.+++.+.....+..
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-----~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-----DEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-----ChhhHHHHHHHHHHcCCCEEEEEC
Confidence 346666777777666443 3467888876554433 777788888888887766555544
No 139
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=24.69 E-value=88 Score=27.85 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 48 LVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 48 l~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
+.+.+++.|- -|.|+|.|.|-..|+..+
T Consensus 93 l~~~i~~~GP-fdGvlGFSQGA~lAa~ll 120 (212)
T PF03959_consen 93 LRDYIEENGP-FDGVLGFSQGAALAALLL 120 (212)
T ss_dssp HHHHHHHH----SEEEEETHHHHHHHHHH
T ss_pred HHHHHHhcCC-eEEEEeecHHHHHHHHHH
Confidence 4566677763 699999999988876543
No 140
>COG0400 Predicted esterase [General function prediction only]
Probab=24.66 E-value=1.9e+02 Score=25.94 Aligned_cols=31 Identities=19% Similarity=0.051 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCC--CCEEEecChhHHHHHHHh
Q psy11500 46 IGLVDILFALGIT--PDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 46 ~al~~ll~~~Gi~--P~~v~GHS~GE~aAa~~a 76 (387)
-.+-.+.++.|+. .-+.+|+|.|-.-|++..
T Consensus 85 ~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~ 117 (207)
T COG0400 85 EFLEELAEEYGIDSSRIILIGFSQGANIALSLG 117 (207)
T ss_pred HHHHHHHHHhCCChhheEEEecChHHHHHHHHH
Confidence 3445556678994 457789999998888754
No 141
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=24.63 E-value=71 Score=28.06 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=23.0
Q ss_pred HHHHHHHHHc-CCCCC--EEEecChhHHHHHHHhC
Q psy11500 46 IGLVDILFAL-GITPD--GIVGHSVGELGCAYADG 77 (387)
Q Consensus 46 ~al~~ll~~~-Gi~P~--~v~GHS~GE~aAa~~aG 77 (387)
++..+.+.+. .|.|+ +++|||.|-+.|++++.
T Consensus 49 ~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 49 VAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 3455666554 46666 67899999999988754
No 142
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=24.17 E-value=1.4e+02 Score=29.67 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCcCcccC---------------cCCchhHHhhcCCCCcchhHHHHHHHH-HHHHHHH-cCCCCCEEEecC
Q psy11500 4 EKYEVVISGVGGVFPEC---------------HSFHEFRELLFSGKSGVTVDNRRWPIG-LVDILFA-LGITPDGIVGHS 66 (387)
Q Consensus 4 ~~v~f~F~GqGsq~~~m---------------~~~~~l~~~l~~~~~~~q~ai~a~q~a-l~~ll~~-~Gi~P~~v~GHS 66 (387)
..++.+++|.|.. ... ..-.+||....+ .+|.-++-.++ +.+..+. ||.++-.++|+|
T Consensus 260 d~~av~~SGDGGW-r~lDk~v~~~l~~~gvpVvGvdsLRYfW~~----rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGyS 334 (456)
T COG3946 260 DTVAVFYSGDGGW-RDLDKEVAEALQKQGVPVVGVDSLRYFWSE----RTPEQIAADLSRLIRFYARRWGAKRVLLIGYS 334 (456)
T ss_pred ceEEEEEecCCch-hhhhHHHHHHHHHCCCceeeeehhhhhhcc----CCHHHHHHHHHHHHHHHHHhhCcceEEEEeec
Confidence 4588899999873 222 111233333322 13444444443 4455554 999999999999
Q ss_pred hhHH
Q psy11500 67 VGEL 70 (387)
Q Consensus 67 ~GE~ 70 (387)
+|.=
T Consensus 335 fGAD 338 (456)
T COG3946 335 FGAD 338 (456)
T ss_pred ccch
Confidence 9963
No 143
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=23.64 E-value=1.7e+02 Score=27.38 Aligned_cols=26 Identities=31% Similarity=0.194 Sum_probs=16.9
Q ss_pred HHHHHHHHHc-CCCCCEEEecChhHHHH
Q psy11500 46 IGLVDILFAL-GITPDGIVGHSVGELGC 72 (387)
Q Consensus 46 ~al~~ll~~~-Gi~P~~v~GHS~GE~aA 72 (387)
-.+.+.+.+. |+.-=. ++-|.||+..
T Consensus 24 ~~~i~~l~~~~Gv~gi~-~~GstGE~~~ 50 (288)
T cd00954 24 RAIVDYLIEKQGVDGLY-VNGSTGEGFL 50 (288)
T ss_pred HHHHHHHHhcCCCCEEE-ECcCCcCccc
Confidence 3566777777 887544 4447888754
No 144
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.46 E-value=2.5e+02 Score=19.08 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCCCEEEEEeeCC-CcEEEeCCHHH--HHHHHHHHHhCCc
Q psy11500 112 YKQMKDMLADYPTIEIACHNAS-DSCTLSGPSAD--VEALVESLVAQGI 157 (387)
Q Consensus 112 ~~~~~~~l~~~~~v~iA~~Nsp-~~~visG~~~~--l~~l~~~l~~~gi 157 (387)
...+++.|.+.+++.=+-+|-. +.++|.++.+. ++++.+.+++.|.
T Consensus 13 ~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 13 AKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp HHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 3567777888888866666644 66788888776 6888888887663
No 145
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=23.17 E-value=1.3e+02 Score=28.09 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCCCEEEecChhHHHH
Q psy11500 47 GLVDILFALGITPDGIVGHSVGELGC 72 (387)
Q Consensus 47 al~~ll~~~Gi~P~~v~GHS~GE~aA 72 (387)
.+.+.+.+.|+..-++.| |.||...
T Consensus 23 ~~i~~l~~~Gv~Gi~~~G-stGE~~~ 47 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVG-TTGESPT 47 (285)
T ss_pred HHHHHHHHcCCCEEEECc-cCccccc
Confidence 455666678887666555 7787644
No 146
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=23.14 E-value=1.2e+02 Score=30.14 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=16.2
Q ss_pred CCCCEEEecChhHHHHHHHh
Q psy11500 57 ITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 57 i~P~~v~GHS~GE~aAa~~a 76 (387)
-.|-.++|||+|-+.|+.++
T Consensus 207 ~~~i~lvGhSmGG~ial~~a 226 (395)
T PLN02652 207 GVPCFLFGHSTGGAVVLKAA 226 (395)
T ss_pred CCCEEEEEECHHHHHHHHHH
Confidence 35789999999999887644
No 147
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=22.69 E-value=63 Score=30.68 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=15.9
Q ss_pred CCCCCEEEecChhHHHHHHH
Q psy11500 56 GITPDGIVGHSVGELGCAYA 75 (387)
Q Consensus 56 Gi~P~~v~GHS~GE~aAa~~ 75 (387)
.=.|-+++|||+|-+.|+..
T Consensus 105 ~~~p~~l~gHSmGg~Ia~~~ 124 (298)
T COG2267 105 PGLPVFLLGHSMGGLIALLY 124 (298)
T ss_pred CCCCeEEEEeCcHHHHHHHH
Confidence 34788999999999877643
No 148
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=22.68 E-value=92 Score=31.06 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=22.3
Q ss_pred HHHHHHHHHc---CCCCCEEEecChhHHHHHHHh
Q psy11500 46 IGLVDILFAL---GITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 46 ~al~~ll~~~---Gi~P~~v~GHS~GE~aAa~~a 76 (387)
-++.+.+.+. ....-+++|||+|-+.|+.+|
T Consensus 250 ~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A 283 (414)
T PRK05077 250 QAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLA 283 (414)
T ss_pred HHHHHHHHhCcccCcccEEEEEEChHHHHHHHHH
Confidence 3556666654 335568999999999987654
No 149
>KOG2968|consensus
Probab=22.16 E-value=82 Score=34.49 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHh
Q psy11500 41 NRRWPIGLVDILFALGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 41 i~a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
--+.+++..+.|++.||.-|+|-|-|+|.+.-+.-|
T Consensus 850 RG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA 885 (1158)
T KOG2968|consen 850 RGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYA 885 (1158)
T ss_pred hhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhh
Confidence 347889999999999999999999999997754444
No 150
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=22.10 E-value=1.2e+02 Score=26.27 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHhCCceEEEcccCCcCCcccchhhHHHHHHHHHhhcCCCCCCCCceEEecccccc
Q psy11500 151 SLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILED 207 (387)
Q Consensus 151 ~l~~~gi~~~~L~v~~~afHS~~m~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~g~~ 207 (387)
.|++.||++-.++. +...=.|+-+.+-+++.+.+..+........+-++||..|..
T Consensus 35 ~Lk~~Gik~li~Dk-DNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 35 HLKKKGIKALIFDK-DNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred hhhhcCceEEEEcC-CCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 48899999988888 766666666666667777766664332213588899987643
No 151
>KOG1553|consensus
Probab=21.91 E-value=1.1e+02 Score=29.79 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCC--EEEecChhHHHHHHHhCcC----------CHHHHHHHHHHH
Q psy11500 40 DNRRWPIGLVDILFALGITPD--GIVGHSVGELGCAYADGCF----------TAEQMILAAHAR 91 (387)
Q Consensus 40 ai~a~q~al~~ll~~~Gi~P~--~v~GHS~GE~aAa~~aG~l----------s~eda~~lv~~R 91 (387)
+-..+|+|+-. +|.+|. .+.|.|+|-++++++|-.. |++|.+-++..|
T Consensus 295 ~DaVvQfAI~~----Lgf~~edIilygWSIGGF~~~waAs~YPdVkavvLDAtFDDllpLAl~r 354 (517)
T KOG1553|consen 295 ADAVVQFAIQV----LGFRQEDIILYGWSIGGFPVAWAASNYPDVKAVVLDATFDDLLPLALFR 354 (517)
T ss_pred HHHHHHHHHHH----cCCCccceEEEEeecCCchHHHHhhcCCCceEEEeecchhhhhhHHhhh
Confidence 34567887744 588775 4469999999999998654 677888777655
No 152
>PLN00215 predicted protein; Provisional
Probab=21.60 E-value=36 Score=25.37 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=10.0
Q ss_pred EEEEEcCCCcCccc
Q psy11500 6 YEVVISGVGGVFPE 19 (387)
Q Consensus 6 v~f~F~GqGsq~~~ 19 (387)
-+-+.||||.||.-
T Consensus 54 aakmipgqggqwvl 67 (110)
T PLN00215 54 AAKMIPGQGGQWVL 67 (110)
T ss_pred hhhccCCCCCeEEE
Confidence 34567888888864
No 153
>PLN02454 triacylglycerol lipase
Probab=21.39 E-value=1.4e+02 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=16.9
Q ss_pred HHHHHHcCCCC--CEEEecChhHHHHHHHh
Q psy11500 49 VDILFALGITP--DGIVGHSVGELGCAYAD 76 (387)
Q Consensus 49 ~~ll~~~Gi~P--~~v~GHS~GE~aAa~~a 76 (387)
-+++..+.-.. -.+.|||+|--.|..+|
T Consensus 217 ~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA 246 (414)
T PLN02454 217 KELLERYKDEKLSIVLTGHSLGASLATLAA 246 (414)
T ss_pred HHHHHhCCCCCceEEEEecCHHHHHHHHHH
Confidence 34444443222 35789999987776554
No 154
>KOG3847|consensus
Probab=21.16 E-value=38 Score=32.49 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=14.8
Q ss_pred EEEecChhHHHHHHHhCc
Q psy11500 61 GIVGHSVGELGCAYADGC 78 (387)
Q Consensus 61 ~v~GHS~GE~aAa~~aG~ 78 (387)
+|+|||+|--+++..++.
T Consensus 244 aViGHSFGgAT~i~~ss~ 261 (399)
T KOG3847|consen 244 AVIGHSFGGATSIASSSS 261 (399)
T ss_pred hheeccccchhhhhhhcc
Confidence 799999998888776654
No 155
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=21.05 E-value=61 Score=28.32 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.3
Q ss_pred CEEEecChhHHHHHHHh
Q psy11500 60 DGIVGHSVGELGCAYAD 76 (387)
Q Consensus 60 ~~v~GHS~GE~aAa~~a 76 (387)
-.++|||.|-..+..++
T Consensus 111 ~tv~GHSYGS~v~G~A~ 127 (177)
T PF06259_consen 111 LTVVGHSYGSTVVGLAA 127 (177)
T ss_pred EEEEEecchhHHHHHHh
Confidence 47899999999987765
No 156
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.91 E-value=1.2e+02 Score=20.90 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=17.1
Q ss_pred CCCcEEEeCCHHHHHHHHHHH
Q psy11500 132 ASDSCTLSGPSADVEALVESL 152 (387)
Q Consensus 132 sp~~~visG~~~~l~~l~~~l 152 (387)
..+.++|+|+.+++....+.+
T Consensus 41 ~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 41 KSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred CCCEEEEEcCHHHHHHHHHHh
Confidence 467799999999998877654
No 157
>CHL00050 rps19 ribosomal protein S19
Probab=20.77 E-value=19 Score=27.79 Aligned_cols=15 Identities=47% Similarity=0.815 Sum_probs=11.5
Q ss_pred CCCCEEEecChhHHHH
Q psy11500 57 ITPDGIVGHSVGELGC 72 (387)
Q Consensus 57 i~P~~v~GHS~GE~aA 72 (387)
|+|+ ++||-+||++-
T Consensus 62 I~~e-MVGhklGEFa~ 76 (92)
T CHL00050 62 ITDQ-MVGHKLGEFAP 76 (92)
T ss_pred Eccc-cccceeeeEee
Confidence 4555 78999999874
No 158
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=20.52 E-value=1.6e+02 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.9
Q ss_pred CCCEEEecChhHHHHHHHhC-------cCCHHHHHHHHHHHHH
Q psy11500 58 TPDGIVGHSVGELGCAYADG-------CFTAEQMILAAHARGK 93 (387)
Q Consensus 58 ~P~~v~GHS~GE~aAa~~aG-------~ls~eda~~lv~~Rg~ 93 (387)
..|.+.|-|.|-+.|+..+. .++.++++++-..++.
T Consensus 40 ~fDli~GTStGgiia~~l~~~~~~g~~~~s~~e~~~~y~~~~~ 82 (329)
T cd07215 40 YFDLVAGTSTGGILTCLYLCPNESGRPKFSAKEALNFYLERGN 82 (329)
T ss_pred ccCeeeccCHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHhhH
Confidence 36999999999988876542 4789999988666554
No 159
>KOG2214|consensus
Probab=20.51 E-value=96 Score=31.67 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCCCEEEecChhHHHHHHHhCcCCHH
Q psy11500 43 RWPIGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAE 82 (387)
Q Consensus 43 a~q~al~~ll~~~Gi~P~~v~GHS~GE~aAa~~aG~ls~e 82 (387)
++-++..+.|-..++-|..+.|-|.|.+.|+.++ +.+-|
T Consensus 187 lfH~GVlrtL~e~dLlP~IIsGsS~GaivAsl~~-v~~~e 225 (543)
T KOG2214|consen 187 LFHIGVLRTLLEQDLLPNIISGSSAGAIVASLVG-VRSNE 225 (543)
T ss_pred hhHHHHHHHHHHccccchhhcCCchhHHHHHHHh-hcchH
Confidence 4567888888899999999999999999987543 44444
No 160
>PLN02511 hydrolase
Probab=20.41 E-value=1.3e+02 Score=29.57 Aligned_cols=22 Identities=14% Similarity=-0.186 Sum_probs=16.4
Q ss_pred cCCCCCEEEecChhHHHHHHHh
Q psy11500 55 LGITPDGIVGHSVGELGCAYAD 76 (387)
Q Consensus 55 ~Gi~P~~v~GHS~GE~aAa~~a 76 (387)
++-.|-.++|||+|-..++..+
T Consensus 170 ~~~~~~~lvG~SlGg~i~~~yl 191 (388)
T PLN02511 170 YPSANLYAAGWSLGANILVNYL 191 (388)
T ss_pred CCCCCEEEEEechhHHHHHHHH
Confidence 4546789999999987765433
No 161
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=20.10 E-value=2.4e+02 Score=26.47 Aligned_cols=26 Identities=31% Similarity=0.169 Sum_probs=16.6
Q ss_pred HHHHHHHHH-cCCCCCEEEecChhHHHH
Q psy11500 46 IGLVDILFA-LGITPDGIVGHSVGELGC 72 (387)
Q Consensus 46 ~al~~ll~~-~Gi~P~~v~GHS~GE~aA 72 (387)
-.+.+.+.+ .|+.-=.+.| |.||+..
T Consensus 27 ~~li~~l~~~~Gv~gi~v~G-stGE~~~ 53 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGG-STGEAFL 53 (293)
T ss_pred HHHHHHHHhcCCCCEEEECC-Ccccccc
Confidence 356677777 8876544444 7788554
Done!