RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11500
(387 letters)
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 164 bits (418), Expect = 6e-48
Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 11/234 (4%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
+ L +L + G+ PD +VGHS GE+ AY G + E ARG+ G M
Sbjct: 70 VALARLLRSWGVRPDAVVGHSSGEIAAAYVAGVLSLEDAARLVAARGRLMQALPG-GGAM 128
Query: 106 AAIGLGYKQMKDMLADYP-TIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNV 164
A+GL ++++ +LA P + +A N+ S LSG V+ L L A+GIFAR + V
Sbjct: 129 LAVGLSEEEVEPLLAGVPDRVSVAAVNSPSSVVLSGDEDAVDELAARLEAEGIFARRLKV 188
Query: 165 ANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTN 224
+ A+HS ++ P L + +P+P ++S+ + A+ A+Y
Sbjct: 189 -DHAFHSPHMEPILDEFRAALAGL--TPRPPRIPFVST--VTGTLIDG-AELDDADYWVR 242
Query: 225 NLLSSVFFEEASAHIPANA---ICIEIAPHGLLQAILKRSLAEKEVVNIPLTLR 275
NL V F +A + A + +E+ PH +L +K++LA + +LR
Sbjct: 243 NLREPVRFADAVRALLAEGGVTVFLEVGPHPVLTGPIKQTLAAAGSAVVLPSLR 296
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 163 bits (415), Expect = 2e-47
Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 14/258 (5%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
I L +L + G+TP +VGHS+GE+ A G + E+ L R + + G M
Sbjct: 71 IALAALLRSYGVTPAAVVGHSLGEIAAAVVAGALSLEEAALVVALRSRLMRQL-AGPGGM 129
Query: 106 AAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA 165
AA+GL ++++ + + +A N+ S ++GP ++ VE + A+G+ AR + V
Sbjct: 130 AAVGLPAEEVEQLARWPDRVVVAIVNSPRSVVVAGPQEALDEFVERVEARGVRARVIAV- 188
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 225
+ A HS + L L I PR + ++S + AEY N
Sbjct: 189 DYASHSPQVEAIGDALALALAD-IAPRTPRVPFYSTTSG-----DPSDQRELDAEYWYRN 242
Query: 226 LLSSVFFEEASAHI--PANAICIEIAPHGLLQAILK---RSLAEKEVVNIPLTLRGVKDG 280
L + V F EA + +E++PH +L A ++ +S K+ + +R D
Sbjct: 243 LRNPVRFAEAVLAAAEQGYLVFVEVSPHPVLLAAVEETLKSADGKDATLVGTLIRDQGD- 301
Query: 281 VKFILNSIGKLYLNGLDL 298
+ L ++ +L G+ +
Sbjct: 302 LVTFLYALAVAHLTGVAV 319
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 94.8 bits (236), Expect = 5e-21
Identities = 62/273 (22%), Positives = 111/273 (40%), Gaps = 32/273 (11%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQ-----------MILAAHARGKA 94
+ L + + G+ P ++GHS+GEL A A G + E M A
Sbjct: 598 VALAALWRSWGVIPGAVIGHSLGELAAAVAAGVLSLEDALRVVATRGRLMQQLAGEGAML 657
Query: 95 SIETDTIDGKMAAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVA 154
++E + + LG Q+ +A N+ ++G + AL+ L A
Sbjct: 658 AVELSLLAEVQELLALGRPQV----------PLAAVNSPQQVVIAGDPEAIAALIARLQA 707
Query: 155 QGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLA 214
QG+ AR + V + A+HS + P L + +P+P IS+
Sbjct: 708 QGVRARRLAV-SHAFHSPLMDPILDEFAAALADL--APRPPQIPLISNVT----GDLAGE 760
Query: 215 QTSSAEYHTNNLLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLAEKEVVNIPL 272
A+Y +L V F +A A A+ IE+ P +L +K++L + +
Sbjct: 761 PGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDA--ILSIA 818
Query: 273 TLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP 305
TLR + L ++ +L++ G+ ++ +PL
Sbjct: 819 TLRRDAPELLSFLAALAQLFVAGVAVDWSPLVY 851
Score = 29.7 bits (67), Expect = 2.9
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVT-VDNRRW 44
+ I G+ FP S EF +LL G+ +T V RW
Sbjct: 6 IAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRW 43
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 65.8 bits (161), Expect = 5e-12
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 55 LGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKA---SIETDTIDGKMAAI-GL 110
LG+ PD + GHS+GE A G + E + RGK ++ G MAA+ GL
Sbjct: 82 LGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGE--GGMAAVLGL 139
Query: 111 GYKQMKDML---ADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA-N 166
+Q++ A +EIA +N+ +SG +E E L G RA+ + +
Sbjct: 140 DDEQVEKACEEAAQGTVVEIANYNSPGQIVISGTKEALEKAAEILKEAGA-KRAIPLPVS 198
Query: 167 IAYHSRYIAPAAPRLLQYLKKV 188
+HS + PAA L + L+KV
Sbjct: 199 GPFHSPLMKPAADELAEALEKV 220
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
This enzyme of fatty acid biosynthesis transfers the
malonyl moeity from coenzyme A to acyl-carrier protein.
The seed alignment for this family of proteins contains
a single member each from a number of bacterial species
but also an additional pair of closely related,
uncharacterized proteins from B. subtilis, one of which
has a long C-terminal extension [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 290
Score = 62.9 bits (153), Expect = 4e-11
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 56 GITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIE-TDTIDGKMAAI-GLGYK 113
G+ PD GHS+GE A G E + RG+ E G MAA+ GL +
Sbjct: 81 GLKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQEAVPEGGGAMAAVIGLDEE 140
Query: 114 QMKDMLADY--PTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA-NIAYH 170
Q+ + +++A N+ +SG VEA G RAV + + A+H
Sbjct: 141 QLAQACEEATENDVDLANFNSPGQVVISGTKDGVEAAAALFKEMGA-KRAVPLEVSGAFH 199
Query: 171 SRYIAPAAPRLLQYLKK 187
SR++ PAA + + L+
Sbjct: 200 SRFMKPAAEKFAETLEA 216
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 61.6 bits (149), Expect = 4e-10
Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIET--DTIDG 103
+G + G D GHS GEL A G + + ++ A +RG+A + G
Sbjct: 662 MGQYKLFTQAGFKADMTAGHSFGELSALCAAGVISDDDYMMLAFSRGQAMAAPTGEADIG 721
Query: 104 KMAAIGLGYKQMKDM----LADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFA 159
M A+ L + + D+ + IA +N+ ++G S ++ ++L +G A
Sbjct: 722 FMYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQLVIAGVSTQIQIAAKALKEKGFKA 781
Query: 160 RAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSP---LAQT 216
+ V+ A+H+ +A A KP S++I + + +P L
Sbjct: 782 IPLPVSG-AFHTPLVAHAQ--------------KP-----FSAAIDKAKFNTPLVPLYSN 821
Query: 217 SSAEYHTNN-----------LLSSVFFEEASAHIPANA--ICIEIAPHGLLQAILKRSLA 263
+ + H+N+ +L SV F E + A + +E P +LQ +++ +L
Sbjct: 822 GTGKLHSNDAAAIKKALKNHMLQSVHFSEQLEAMYAAGARVFVEFGPKNILQKLVENTLK 881
Query: 264 EKE 266
+KE
Sbjct: 882 DKE 884
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit.
Members of this protein family are the epsilon subunit
of malonate decarboxylase. This subunit has
malonyl-CoA/dephospho-CoA acyltransferase activity.
Malonate decarboxylase may be a soluble enzyme, or
linked to membrane subunits and active as a sodium pump.
The epsilon subunit is closely related to the malonyl
CoA-acyl carrier protein (ACP) transacylase family
described by TIGR00128, but acts on an ACP subunit of
malonate decarboxylase that has an unusual coenzyme A
derivative as its prothetic group.
Length = 295
Score = 53.5 bits (129), Expect = 6e-08
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 52 LFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAI-GL 110
L AL P + G+SVGE A G T + + R + M A+ GL
Sbjct: 70 LLALLPRPSAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMDQAVPGGYGMLAVLGL 129
Query: 111 GYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA-NIAY 169
++ ++A + + +A NA D ++G A + A+ E A G +RA +A +
Sbjct: 130 DLAAVEALIAKH-GVYLAIINAPDQVVIAGSRAALRAVAELARAAGA-SRAKRLAVRVPS 187
Query: 170 HSRYIAPAAPRLLQYLKKVIPSPKPR 195
H+ +A AA + + L + IP PR
Sbjct: 188 HTPLLAKAAEQFAEALAE-IPLAAPR 212
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of
beta-ketoacyl synthase is located between the N and
C-terminal domains. The N-terminal domain contains most
of the structures involved in dimer formation and also
the active site cysteine.
Length = 243
Score = 35.3 bits (82), Expect = 0.036
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 7 EVVISGVGGVFPECHSFHEFRELLFSGKSGVT 38
V I+G+G FP EF ELL +G+ +
Sbjct: 3 PVAITGMGCRFPGGVGPEEFWELLLAGRDAIR 34
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products,
called polyketides, by successive decarboxylating
Claisen condensations. PKSs can be divided into 2
groups, modular type I PKSs consisting of one or more
large multifunctional proteins and iterative type II
PKSs, complexes of several monofunctional subunits.
Length = 421
Score = 34.8 bits (81), Expect = 0.075
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 7 EVVISGVGGVFPECHSFHEFRELLFSGKSGVT-VDNRRWPI 46
+ I G+ FP EF E L G+ ++ + RW
Sbjct: 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDA 42
>gnl|CDD|224666 COG1752, RssA, Predicted esterase of the alpha-beta hydrolase
superfamily [General function prediction only].
Length = 306
Score = 32.8 bits (75), Expect = 0.24
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 46 IGLVDILFALGITPDGIVGHSVGEL-GCAYADGCFTAEQMILAAHA 90
IG++ L GI D I G S G + YA G +++ LAA
Sbjct: 27 IGVLKALEEAGIPIDVIAGTSAGAIVAALYAAGM-DEDELELAAQR 71
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 33.2 bits (75), Expect = 0.29
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 157 IFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQT 216
+ +RA+ V + +R P A +IPSP R + S + P +
Sbjct: 332 VLSRALAVDLHSSEARVFVPEA---------IIPSPPSRGQVYHGSGYRQSLVDDPQVRE 382
Query: 217 SSAEYHTNNLLSSVFFEE 234
++AE+H N +SV+ EE
Sbjct: 383 AAAEFHANPKSASVYLEE 400
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 31.1 bits (70), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 4 EKYEVVISGVGGVFPECHSFHEFRELLFSGKSGVT 38
++ VV++G+G V P H F L G SG++
Sbjct: 127 KQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGIS 161
>gnl|CDD|190042 pfam01567, Hanta_G1, Hantavirus glycoprotein G1. The medium (M)
genome segment of hantaviruses (family Bunyaviridae)
encodes the two virion glycoproteins. G1 and G2, as a
precursor protein in the complementary sense RNA.
Length = 525
Score = 30.4 bits (69), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 136 CTLSGPSADVEALVESLVAQGIF 158
CTL+GP A EA E+ GIF
Sbjct: 363 CTLAGPGASCEAYSEN----GIF 381
>gnl|CDD|132866 cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like
phospholipase domain containing protein 6. Bacterial
patatin-like phospholipase domain containing protein 6.
PNPLA6 is commonly known as Neuropathy Target Esterase
(NTE). NTE has at least two functional domains: the
N-terminal domain putatively regulatory domain and the
C-terminal catalytic domain which shows esterase
activity. NTE shows phospholipase activity for
lysophosphatidylcholine (LPC) and phosphatidylcholine
(PC). Exposure of NTE to organophosphates leads to
organophosphate-induced delayed neurotoxicity (OPIDN).
OPIDN is a progressive neurological condition that is
characterized by weakness, paralysis, pain, and
paresthesia. This group includes YCHK and rssA from
Escherichia coli as well as Ylbk from Bacillus
amyloliquefaciens.
Length = 175
Score = 29.5 bits (67), Expect = 1.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 46 IGLVDILFALGITPDGIVGHSVGEL-GCAYADGC 78
IG++ L GI D I G S+G L G YA G
Sbjct: 16 IGVLRALEEEGIEIDIIAGSSIGALVGALYAAGH 49
>gnl|CDD|182352 PRK10279, PRK10279, hypothetical protein; Provisional.
Length = 300
Score = 30.1 bits (68), Expect = 2.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 42 RRWP-IGLVDILFALGITPDGIVGHSVGEL-GCAYA 75
R W IG+++ L +GI D + G S+G L G AYA
Sbjct: 16 RGWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYA 51
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 29.0 bits (66), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 7 EVVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGL 48
VVI+G+G V P + EF E L +G+SG+ R G
Sbjct: 2 RVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGF 43
>gnl|CDD|132848 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar
to Z1214 protein of Escherichia coli. Patatin-like
phospholipase similar to Z1214 protein of Escherichia
coli. This family predominantly consists of bacterial
patatin glycoproteins and some representatives from
eukaryotes and archaea. The patatin protein accounts
for up to 40% of the total soluble protein in potato
tubers. Patatin is a storage protein, but it also has
the enzymatic activity of a lipid acyl hydrolase,
catalyzing the cleavage of fatty acids from membrane
lipids. Members of this family have also been found in
vertebrates.
Length = 215
Score = 28.0 bits (63), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 52 LFALGITPDGIVGHSVGEL-GCAYA 75
L GI PD I G S+G + G A
Sbjct: 20 LAEAGIEPDIISGTSIGAINGALIA 44
>gnl|CDD|236181 PRK08193, araD, L-ribulose-5-phosphate 4-epimerase; Reviewed.
Length = 231
Score = 27.9 bits (63), Expect = 8.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 164 VANIAYHSRYIAPAAPRLLQYL 185
VA +AY +R + P P + Q L
Sbjct: 192 VAKMAYFTRQLNPQLPDMQQTL 213
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 28.2 bits (64), Expect = 8.4
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 141 PSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKVI 189
PSAD+ AL+++L++ + A V + + PA L + I
Sbjct: 186 PSADLPALLDALISLRWDSGADVVDAAL--AAFATPAPASELAAQRAWI 232
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 27.7 bits (63), Expect = 9.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGV 37
+ I G+ FP EF +LL +G V
Sbjct: 1 IAIVGMSCRFPGADDPEEFWDLLLAGLDDV 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0893 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,926,923
Number of extensions: 1957978
Number of successful extensions: 1737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1720
Number of HSP's successfully gapped: 29
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)