RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11500
(387 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 314 bits (806), Expect = 6e-99
Identities = 134/283 (47%), Positives = 187/283 (66%), Gaps = 3/283 (1%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
IGL+D+L +G+ PDGIVGHS+GE+ C YADGC + E+ +LAA+ RG+ E G M
Sbjct: 563 IGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIKEAHLPPGAM 622
Query: 106 AAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA 165
AA+GL +++ K P + ACHN+ D+ T+SGP A V VE L +G+FA+ V
Sbjct: 623 AAVGLSWEECKQRCP--PGVVPACHNSKDTVTISGPQAPVFEFVEQLRKEGVFAKEVRTG 680
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 225
+A+HS ++ AP LLQ LKKVI PKPRS++W+S+SI E W S LA+TSSAEY+ NN
Sbjct: 681 GMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNN 740
Query: 226 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFIL 285
L+S V F+EA H+P +A+ +EIAPH LLQA+LKR L IPL + +D ++F L
Sbjct: 741 LVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKP-SCTIIPLMKKDHRDNLEFFL 799
Query: 286 NSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGH 328
IG+L+L+G+D N L+P V++P RGT + + W+H
Sbjct: 800 AGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSL 842
Score = 43.3 bits (103), Expect = 1e-04
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 7 EVVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIG 47
EVVI+G+ G PE + EF + L G VT D+RRW G
Sbjct: 5 EVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAG 45
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 310 bits (795), Expect = 5e-95
Identities = 125/283 (44%), Positives = 185/283 (65%), Gaps = 3/283 (1%)
Query: 46 IGLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKM 105
I L+D+L +LG+ PDGI+GHS+GE+ C YADGC T E+ +L+++ RG E + + G M
Sbjct: 561 IALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEEAVLSSYWRGYCIKEANVLPGAM 620
Query: 106 AAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVA 165
AA+GL +++ K P I ACHN+ D+ T+SGP A + ++ L + +F + V
Sbjct: 621 AAVGLSWEECKQRCP--PGIVPACHNSKDTVTISGPQAAMSEFLQQLKREDVFVKEVRTG 678
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 225
IA+HS ++ AP LL+ L+KVI PKPRS +W+S+SI E W LA+T SAEY NN
Sbjct: 679 GIAFHSYFMESIAPTLLRQLRKVILDPKPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNN 738
Query: 226 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFIL 285
L+S V F+EA H+PA+A+ +EIAPH LLQA+LKRSL IPL + +D ++F L
Sbjct: 739 LVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLES-SCTIIPLMKKDHRDNLEFFL 797
Query: 286 NSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDWEHGH 328
+++G+L+L G+ +N L+P V++P RGT + + W+H
Sbjct: 798 SNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQ 840
Score = 47.6 bits (113), Expect = 6e-06
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 7 EVVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGLVDI 51
EVVI+G+ G PE + EF L G VT D+RRW GL +
Sbjct: 3 EVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGL 47
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 118 bits (297), Expect = 5e-30
Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 16/258 (6%)
Query: 48 LVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAA 107
+ L LG P G +GHS+GEL G A+ + A ARG+A M +
Sbjct: 158 GIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAATEAPSGMLS 217
Query: 108 IGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVNVANI 167
+ +++ A +A N ++G +++ + E+ GI A + V++
Sbjct: 218 LRADLAAARELAAG-TGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH- 275
Query: 168 AYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLL 227
A+HS +APAA L + ++ P S+ G+ A E L
Sbjct: 276 AFHSPLMAPAAEALRRAAGRLPWRR-PERP-VAST-----VTGAWWADEDPVEVLVRQLT 328
Query: 228 SSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNS 287
V F EA + A+ +E+ P +L A+ + + ++L +
Sbjct: 329 GPVRFREALGLLDADL-LVEVGPGRMLSALAEAAGRT------AVSLDAGAASAAGMAAG 381
Query: 288 IGKLYLNGLDLNLAPLYP 305
L+ G + P +
Sbjct: 382 TAALFAAGAVDDATPFFA 399
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 115 bits (289), Expect = 5e-28
Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 26/268 (9%)
Query: 52 LFAL----GITPDGIVGHSVGELGCAYADGCFTAEQMILAAH---ARGKASIETDTIDGK 104
L L G+ P +VGHS GE+ A+ G T E AA R + + + + +G
Sbjct: 608 LAELWRSYGVEPAAVVGHSQGEIAAAHVAGALTLED---AAKLVVGRSRL-MRSLSGEGG 663
Query: 105 MAAIGLGYKQMKDMLADYPT-IEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVN 163
MAA+ LG +++ L + + +A N S +SG + A E A+GI R ++
Sbjct: 664 MAAVALGEAAVRERLRPWQDRLSVAAVNGPRSVVVSGEPGALRAFSEDCAAEGIRVRDID 723
Query: 164 VANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHT 223
V + A HS I LL+ + +P+P + S+ +E A Y
Sbjct: 724 V-DYASHSPQIERVREELLETTGDI--APRPARVTFHST--VESRSMDG--TELDARYWY 776
Query: 224 NNLLSSVFFEEASAHIPAN--AICIEIAPHGLL----QAILKRSLAEKEVVNIPLTLRGV 277
NL +V F +A + + IE++PH ++ + ++ + ++ V + +L
Sbjct: 777 RNLRETVRFADAVTRLAESGYDAFIEVSPHPVVVQAVEEAVEEADGAEDAVVVG-SLHRD 835
Query: 278 KDGVKFILNSIGKLYLNGLDLNLAPLYP 305
+ L S+ +++G+D+ P
Sbjct: 836 GGDLSAFLRSMATAHVSGVDIRWDVALP 863
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 115 bits (289), Expect = 6e-28
Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 25/268 (9%)
Query: 52 LFAL----GITPDGIVGHSVGELGCAYADGCFTAEQMILAAH---ARGKASIETDTIDGK 104
L AL G+ P +VGHS GE+ A+ G T E AA R + + G
Sbjct: 624 LAALWRSHGVEPAAVVGHSQGEIAAAHVAGALTLED---AAKLVAVRSRV-LRRLGGQGG 679
Query: 105 MAAIGLGYKQMKDMLADYPT-IEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAVN 163
MA+ GLG +Q + + + + IA N S ++G S ++ L+ A+ AR +
Sbjct: 680 MASFGLGTEQAAERIGRFAGALSIASVNGPRSVVVAGESGPLDELIAECEAEAHKARRIP 739
Query: 164 VANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHT 223
V + A HS + LL L + SP S+ T Y
Sbjct: 740 V-DYASHSPQVESLREELLTELAGI--SPVSADVALYST--TTGQPIDT--ATMDTAYWY 792
Query: 224 NNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAEKEVVNIPL----TLRGV 277
NL V F++A+ + +E++PH +L ++ +L + TLR
Sbjct: 793 ANLREQVRFQDATRQLAEAGFDAFVEVSPHPVLTVGIEATLDSALPADAGACVVGTLRRD 852
Query: 278 KDGVKFILNSIGKLYLNGLDLNLAPLYP 305
+ G+ ++G+ Y G++++ +P +
Sbjct: 853 RGGLADFHTALGEAYAQGVEVDWSPAFA 880
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.9 bits (186), Expect = 7e-15
Identities = 61/350 (17%), Positives = 108/350 (30%), Gaps = 135/350 (38%)
Query: 44 WP-IGLVD----ILFA--LGITPDGIVGHSVGELGC----------AYADGCFTAEQMIL 86
P IG++ ++ A LG TP + + G G A D + E +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD---SWESFFV 294
Query: 87 AAH----------ARGK---------ASIETDTIDGK------MAAI-GLGYKQMKDM-- 118
+ R SI D+++ M +I L +Q++D
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 119 -----LADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFA-------------R 160
L +EI+ N + + +SGP + L +L + A R
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSER 412
Query: 161 AVNVAN----IA--YHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLA 214
+ +N +A +HS + PA+ + + L K + + + P+
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVK-------NNVSFNAKD-----IQIPV- 459
Query: 215 QTSSAEYHTNN--------------LLSSVFFE----EASAHIPANAICIEIAPHGLLQA 256
Y T + ++ + E + A I ++ P G
Sbjct: 460 ------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-LDFGP-GGASG 511
Query: 257 ILKRSLAEKEVVNIPLTLRGVKDG--VKFILNSIGKLYLNGLDLNLAPLY 304
+ LT R KDG V+ I+ LD+N Y
Sbjct: 512 LGV------------LTHR-NKDGTGVRVIVAG-------TLDINPDDDY 541
Score = 70.1 bits (171), Expect = 5e-13
Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 57/179 (31%)
Query: 16 VFPECHSFHEFRELLFSGKSGVTVDNRRWPIGLVDI-------LFAL-----------GI 57
+F E + F GL+ L + G+
Sbjct: 1706 IFKEIN--EHSTSYTFRS-----------EKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 58 TPDGIV--GHSVGE---LGCAYADGCFTAEQMILAAHARGKA------SIETDTIDGKMA 106
P GHS+GE L + A + E ++ RG E + M
Sbjct: 1753 IPADATFAGHSLGEYAAL-ASLA-DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 107 AI-------GLGYKQMKDMLADYPT-----IEIACHNASDSCT-LSGPSADVEALVESL 152
AI + ++ ++ +EI +N + +G ++ + L
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 64.6 bits (158), Expect = 1e-11
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 56 GITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAI-GLG 111
G TPD + GHS+GE L A GCF E + R + + DG MAAI
Sbjct: 82 GETPDFLAGHSLGEFNALLAA---GCFDFETGLKLVARRAELMSQAR--DGAMAAIVNAS 136
Query: 112 YKQMKDMLADYP--TIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAV--NVANI 167
+Q++ L ++ IA N +SGP+ ++ R + N +
Sbjct: 137 REQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIARAEALFQHDR--VRYLRLNTS-G 193
Query: 168 AYHSRYIAPAAPRLLQYLKKV 188
A+HS+++ PA +L+
Sbjct: 194 AFHSKFMRPAQQAFAAHLQSF 214
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 62.5 bits (153), Expect = 3e-11
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 15/146 (10%)
Query: 51 ILFALGITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAA 107
PD + GHS+GE L A G F E + RG+ + G MAA
Sbjct: 71 KRREEEAPPDFLAGHSLGEFSALFAA---GVFDFETGLALVKKRGELMGDA--RGGGMAA 125
Query: 108 I-GLGYKQMKDML--ADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAV-- 162
+ GL ++++++L ++IA N+ +SG ++ L A G +
Sbjct: 126 VIGLDEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGA-KKYTVL 184
Query: 163 NVANIAYHSRYIAPAAPRLLQYLKKV 188
V + A+HSR++ PA ++L+
Sbjct: 185 RV-SAAFHSRFMRPAMVEFGRFLEGY 209
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 60.2 bits (147), Expect = 2e-10
Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 47/237 (19%)
Query: 55 LGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARG----KASIETDTIDGKMAAI-G 109
L + GHSVGE+ G A+ + A RG KA M+A+ G
Sbjct: 81 LAGKDVIVAGHSVGEIAAYAIAGVIAADDAVALAATRGAEMAKACATE---PTGMSAVLG 137
Query: 110 LGYKQMKDMLADYPTIEIACHNASDSCT----LSGPSADVEALVESLVAQGIFARAVNVA 165
++ L ++ A+ + +G +E L E A+ RA+ VA
Sbjct: 138 GDETEVLSRLE-----QLDLVPANRNAAGQIVAAGRLTALEKLAEDPPAKAR-VRALGVA 191
Query: 166 NIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTN- 224
A+H+ ++APA + + P + L + T+
Sbjct: 192 -GAFHTEFMAPALDGFAAAAANIATAD-PT---------------ATLLSNRDGKPVTSA 234
Query: 225 -----NLL----SSVFFEEASAHIPANAI--CIEIAPHGLLQAILKRSLAEKEVVNI 270
L+ V ++ +A + + + +E P G L I KR L +
Sbjct: 235 AAAMDTLVSQLTQPVRWDLCTATLREHTVTAIVEFPPAGTLSGIAKRELRGVPARAV 291
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 57.5 bits (140), Expect = 2e-09
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 56 GITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKA---SIETDTIDGKMAAI- 108
G P GHS+GE A G E + RG+ ++ G MAA+
Sbjct: 79 GKPPALAAGHSLGEWTAHVAA---GTLELEDALRLVRLRGRYMQEAVPVGE--GAMAAVL 133
Query: 109 GLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAV--NVAN 166
L ++++ L +EIA NA + +SG VE E L + AR V V +
Sbjct: 134 KLPLEEIQKALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERLKERR--ARVVFLPV-S 190
Query: 167 IAYHSRYIAPAAPRLLQYLKKV 188
+HS +APA RL + L +V
Sbjct: 191 APFHSSLMAPARKRLAEDLAQV 212
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 56.8 bits (138), Expect = 3e-09
Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 16/145 (11%)
Query: 53 FALGITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKA---SIETDTIDGKMA 106
G+ P +GHS+GE + + G E+ + H RGK + M
Sbjct: 91 ANGGLKPVFALGHSLGEVSAVSLS---GALDFEKALKLTHQRGKMMQEACANKD--ASMM 145
Query: 107 AI-GLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAV--N 163
+ G+ + + + + A N L+G D++AL +L G R V
Sbjct: 146 VVLGVSEESLLSLCQRTKNVWCANFNGGMQVVLAGVKDDLKALEPTLKEMGA-KRVVFLE 204
Query: 164 VANIAYHSRYIAPAAPRLLQYLKKV 188
+ ++A H ++ P + + L+K
Sbjct: 205 M-SVASHCPFLEPMIFKFQELLEKS 228
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 56.4 bits (137), Expect = 4e-09
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 51 ILFALGITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKA---SIETDTIDGK 104
L LG+ G S+GE L + G E + RGK ++ G
Sbjct: 76 ALDKLGVKSHISCGLSLGEYSALIHS---GAINFEDGVKLVKKRGKFMQEAVAEGI--GG 130
Query: 105 MAAI-GLGYKQMKDMLADYPT---IEIACHNASDSCTLSGPSADVEALVESLVAQGIFAR 160
M A+ + +Q+ +++ +E A +N+ +SG +E +E + G R
Sbjct: 131 MVAVLRMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKEVG--GR 188
Query: 161 AV--NVANIAYHSRYIAPAAPRLLQYLKKV 188
A+ V+ +H + PAA +L L K+
Sbjct: 189 AIKLPVS-APFHCSMLQPAAEKLEDELNKI 217
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 55.3 bits (134), Expect = 9e-09
Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 50/247 (20%)
Query: 47 GLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQMILAAHARG----KASIETDTID 102
V G TP + GHSVGE+ A G + RG +A+ T +
Sbjct: 79 TSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVT---E 135
Query: 103 GKMAAI-GLGYKQMKDMLADYPTIEIACHNASDSCT----LSGPSADVEALVESLVAQGI 157
M+A+ G + L + A+ + +G + AL E
Sbjct: 136 TGMSALLGGDPEVSVAHLE-----RLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGV- 189
Query: 158 FARAV--NVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQ 215
+ V VA A+H+R++APA +L + K + P+ P+
Sbjct: 190 -RKVVPLKVA-GAFHTRHMAPAVDKLAEAAKALTPAD-PK---------------VTYVS 231
Query: 216 TSSAEYHTN-----NLL-----SSVFFEEASAHIPANAIC--IEIAPHGLLQAILKRSLA 263
+ + L + V ++ + IE+ P G L + KR+L
Sbjct: 232 NKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALP 291
Query: 264 EKEVVNI 270
+ + +
Sbjct: 292 GVKTLAL 298
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 51.0 bits (123), Expect = 2e-07
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 33/157 (21%)
Query: 51 ILFALGITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMA 106
+L G PD + G S+GE L + G E + RG E GKM
Sbjct: 75 LLQEKGYQPDMVAGLSLGEYSALVAS---GALDFEDAVALVAKRGAYMEEAAPADSGKMV 131
Query: 107 AIGLGYKQMKDMLADYPTIEIACHNASDSCTL-------------SGPSADVEALVESLV 153
A+ L IE AC AS+ + +G V+ VE L
Sbjct: 132 AV-LN--------TPVEVIEEACQKASELGVVTPANYNTPAQIVIAGEVVAVDRAVELLQ 182
Query: 154 AQGIFARAV--NVANIAYHSRYIAPAAPRLLQYLKKV 188
G R + V+ +H+ + PA+ +L + L +V
Sbjct: 183 EAGA-KRLIPLKVS-GPFHTSLLEPASQKLAETLAQV 217
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 51.0 bits (123), Expect = 2e-07
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 20/146 (13%)
Query: 56 GITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKA---SIETDTIDGKMAAI- 108
+ PD +GHS+GE L A + E + RG+ + T G MAA+
Sbjct: 87 NLNPDFTMGHSLGEYSSLVAA---DVLSFEDAVKIVRKRGQLMAQAFPTGV--GSMAAVL 141
Query: 109 GLGYKQMKDMLADYPTIEIACHNASDSCT----LSGPSADVEALVESLVAQGIFARAV-- 162
GL + ++ ++ + + A+ +C +SG A ++ LVE + G R +
Sbjct: 142 GLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGA-KRVMPL 200
Query: 163 NVANIAYHSRYIAPAAPRLLQYLKKV 188
V + +HS + Y+ +
Sbjct: 201 AV-SGPFHSSLMKVIEEDFSSYINQF 225
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 49.4 bits (119), Expect = 7e-07
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 53 FALGITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKA---SIETDTIDGKMA 106
+ + GHS+GE L A G F+ RG A ++ G MA
Sbjct: 85 LNVEKKVKFVAGHSLGEYSALCAA---GTFSLTDTARLLRIRGNAMQAAVAVGE--GSMA 139
Query: 107 AI-GLGYKQMKDMLADYPTIEIACHNASDSCT----LSGPSADVEALVESLVAQGIFARA 161
A+ GL K ++++ + C A+D+ +SG + VE VE +G RA
Sbjct: 140 ALIGLDEKDVEEICEIVAEEGL-CQIANDNGGGQIVISGEAKAVETAVEVASQKGA-KRA 197
Query: 162 V--NVANIAYHSRYIAPAAPRLLQYLKKV 188
V V+ +HS + PAA + L V
Sbjct: 198 VLLPVS-APFHSALMQPAANAMKNALLTV 225
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 49.4 bits (119), Expect = 8e-07
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 56 GITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKA---SIETDTIDGKMAAI- 108
G P + GHS+GE L CA G E+ + RG+ ++ G M AI
Sbjct: 86 GPKPQVMAGHSLGEYAALVCA---GALKFEEAVKLVEKRGQYMQEAVPVGE--GAMGAII 140
Query: 109 GLGYKQMKDMLADYPT---IEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAV--N 163
GL +++ + + ++ A N++D +SG S V+ + +G A
Sbjct: 141 GLNEAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNMAKTEGA-KIAKRIP 199
Query: 164 VANIAYHSRYIAPAAPRLLQYLKKV 188
V ++ H + PAA RL Q + K+
Sbjct: 200 V-SVPSHCPLMQPAADRLAQDIAKI 223
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 48.7 bits (117), Expect = 1e-06
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 56 GITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAI-GL 110
G P + GHS+GE L A G + R +A G MAAI GL
Sbjct: 88 GAQPSIVAGHSLGEYTALVAA---GAIAFRDALPLVRFRAQAMQTAVPVGVGGMAAILGL 144
Query: 111 GYKQMKDMLADYPT---IEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAV--NVA 165
++ + A+ +E NA ++G A +E E +G RA+ V
Sbjct: 145 DDDTVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEKACEIAKEKGA-KRALPLPV- 202
Query: 166 NIAYHSRYIAPAAPRLLQYLKKV 188
+ +HS + PA+ +L +YL V
Sbjct: 203 SAPFHSSLLKPASDKLREYLAGV 225
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 48.7 bits (117), Expect = 1e-06
Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 33/152 (21%)
Query: 56 GITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAIGLG 111
G P + GHS+GE L A G + RG+ G MAA+ LG
Sbjct: 84 GQRPALLAGHSLGEYTALVAA---GVLSLHDGAHLVRLRGQFMQAAAPAGVGAMAAV-LG 139
Query: 112 YKQMKDMLADYPTIEIACHNASDSCT-------------LSGPSADVEALVESLVAQGIF 158
A+ + C A+ S + G +A V+ + L +G+
Sbjct: 140 --------AEDAVVLEVCAEAAGSQVVVPANFNSPGQIVIGGDAAAVDRALALLAERGV- 190
Query: 159 ARAV--NVANIAYHSRYIAPAAPRLLQYLKKV 188
+AV V ++ H+ + AA +L + + +
Sbjct: 191 RKAVKLAV-SVPSHTPLMRDAANQLGEAMAGL 221
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 48.4 bits (116), Expect = 2e-06
Identities = 34/162 (20%), Positives = 52/162 (32%), Gaps = 41/162 (25%)
Query: 54 ALGITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAIG 109
++ G SVGE L A G + + A R +A E + + M ++
Sbjct: 105 SVIENCVAAAGFSVGEFAALVFA---GAMEFAEGLYAVKIRAEAMQEASEAVPSGMLSV- 160
Query: 110 LGYKQMKDMLADYPTIEIACHNASDSCT---------------------LSGPSADVEAL 148
LG AC A + C +SG + L
Sbjct: 161 LG--------QPQSKFNFACLEAREHCKSLGIENPVCEVSNYLFPDCRVISGHQEALRFL 212
Query: 149 VESLVAQGIFARAV--NVANIAYHSRYIAPAAPRLLQYLKKV 188
++ R V+ A+H+R + PA L Q LK V
Sbjct: 213 QKNSSKFHF-RRTRMLPVS-GAFHTRLMEPAVEPLTQALKAV 252
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 47.1 bits (113), Expect = 4e-06
Identities = 38/143 (26%), Positives = 54/143 (37%), Gaps = 15/143 (10%)
Query: 56 GITPDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKASIET-DTIDGKMAAI-GL 110
G P + GHS+GE L CA G + RGK E G MAAI GL
Sbjct: 82 GKAPAMMAGHSLGEYSALVCA---GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGL 138
Query: 111 GYKQMKDMLADYPT---IEIACHNASDSCTLSGPSADVEALVESLVAQGIFARAV--NVA 165
+ + + N+ ++G VE + A G RA+ V
Sbjct: 139 DDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGA-KRALPLPV- 196
Query: 166 NIAYHSRYIAPAAPRLLQYLKKV 188
++ H + PAA +L L K+
Sbjct: 197 SVPSHCALMKPAADKLAVELAKI 219
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 45.4 bits (107), Expect = 3e-05
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 59/193 (30%)
Query: 54 ALGITPD-------GIVGHSVGELGCAYADGCFTAE-------QMILAAHARGKASIET- 98
LG TP G GHS G + + E + I G E
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 99 --DTIDGK---------------MAAI-GLGYKQMKDMLADY-------PTIEIACHNAS 133
++ M +I L +Q++D + +EI+ N +
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 134 DSCTLSGPSADVEALVESLVAQGIFARAVNVANIA------------------YHSRYIA 175
+ +SGP + L +L ++ + I +HS +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 176 PAAPRLLQYLKKV 188
PA+ + + L K
Sbjct: 434 PASDLINKDLVKN 446
Score = 40.8 bits (95), Expect = 9e-04
Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 33/211 (15%)
Query: 64 GHSVGE---LGCAYADGCFTAEQMILAAHARGKA------SIETDTIDGKMAAI------ 108
GHS+GE L + E ++ RG E + M AI
Sbjct: 1806 GHSLGEYAALASL--ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1863
Query: 109 -GLGYKQMKDMLADYPT-----IEIACHNASDS-CTLSGPSADVEALVESLVAQGIFARA 161
+ ++ ++ +EI +N + +G ++ + L +
Sbjct: 1864 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1923
Query: 162 VNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEY 221
+ + + ++ K KPR K LE + S +
Sbjct: 1924 IIELQKSLSLEEVEGHLFEIIDEASKKSAV-KPRPLK------LERGFACIPLVGISVPF 1976
Query: 222 HTNNLLSSV--FFEEASAHIPANAICIEIAP 250
H+ L++ V F +I + +
Sbjct: 1977 HSTYLMNGVKPFKSFLKKNIIKENVKVARLA 2007
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 44.6 bits (105), Expect = 5e-05
Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 59/193 (30%)
Query: 54 ALGITPD-------GIVGHSVGELGCAYADGCFTAEQMILAAH-------ARGKASIETD 99
LG P G GHS G + A T ++ AA G S +
Sbjct: 249 TLGREPGELLERFSGTTGHSQGIVVAAAIATARTWDEFATAAKRAVELLFWIGLRSQQAY 308
Query: 100 TIDG------------------KMAAI-GLGYKQMKDMLADY-------PTIEIACHNAS 133
M +I L +++ + I I+ N++
Sbjct: 309 PRTSLAPSTLQDSVENGEGTPTPMLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSA 368
Query: 134 DSCTLSGPSADVEALVESLVAQGIFARAVNVANI------------------AYHSRYIA 175
+ ++GP + L L ++ I +HS Y+A
Sbjct: 369 RNFVVTGPPISLYGLNLRLRKVKA-PTGLDQNRIPFTQRKARFVNRFLPITAPFHSPYLA 427
Query: 176 PAAPRLLQYLKKV 188
A +L + +
Sbjct: 428 GAHAHILGDVDDM 440
Score = 42.3 bits (99), Expect = 2e-04
Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 29/176 (16%)
Query: 59 PDGIVGHSVGE---LGCAYADGCFTAEQMILAAHARGKA---SIETDT---IDGKMAAI- 108
GHS+GE L E ++ RG ++E D + M A+
Sbjct: 1812 DSTFAGHSLGEYSALVA--LADVMPIESLVSVVFYRGLTMQVAVERDEQGRSNYAMCAVN 1869
Query: 109 ------GLGYKQMKDMLADYPT-----IEIACHNASDSCT-LSGPSADVEALVESLVAQG 156
+ ++ ++ + +EI +N ++ +G ++ L L
Sbjct: 1870 PSRISPTFTEQALQYVVENIAEVTGWLLEIVNYNVANMQYVAAGDLRALDTLANVLNILK 1929
Query: 157 IFARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSP--KPRSSKWISSSILEDAWG 210
+ + S + L++ +++ KP+ + G
Sbjct: 1930 MQKIDIQA---LMQSMSLEDVRAHLVEIIQECRKQTEAKPQPVQLERGFATIPLRG 1982
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 102
Score = 32.6 bits (74), Expect = 0.046
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 108 IGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESL 152
IG + + + P + I D TL GP+ DV E +
Sbjct: 42 IGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVSVAQEQI 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.26
Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 45/223 (20%)
Query: 112 YKQMKDMLADYPT---IEIACHNASDSCTLS-----GPSADVEALVESLVAQGIFARAVN 163
Y++M D L+ +P I LS +DV +V L + +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTI--------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 164 VANIAYHSRYIAPAAPRL-LQYL-KKVIPS---PKPRSSKWISSSILEDAWGSPLAQTSS 218
+ I+ S Y+ L + ++ PK S + L+ + S +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---- 478
Query: 219 AEYHTNN--------LLSSVF----FEEASAHIPANAICIEIAPHGLLQAILKRSLAEKE 266
+H N L VF F E + A A +L + + +
Sbjct: 479 --HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN---ASGSILNTLQQLKFYKPY 533
Query: 267 VV-NIPLTLRGVKDGVKFILNSIGKLYLN-GLDL-NLAPLYPE 306
+ N P R V + F+ L + DL +A + +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.88
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 13/38 (34%)
Query: 113 KQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVE 150
K+++ L Y A DS P+ ++A +E
Sbjct: 23 KKLQASLKLY---------ADDS----APALAIKATME 47
Score = 26.8 bits (58), Expect = 9.0
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 331 KLSELEVQIKSYPAD 345
L +L+ +K Y D
Sbjct: 21 ALKKLQASLKLYADD 35
>1vkw_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP:
d.90.1.2
Length = 218
Score = 28.9 bits (64), Expect = 2.5
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 73 AYADGCFTAEQMILAAHARGKAS--IETDTIDGKMAAIGLGYKQMKDMLADYPTIEIACH 130
+ F EQ++L A+G + + I GY + ++ I
Sbjct: 76 ELVEYGFQGEQIVLFLTAQGFGTCWMARSPHPDVPYIIVFGYPRTRNFTRKRRPITSFLE 135
Query: 131 NASDSCT 137
N +
Sbjct: 136 NDLEELP 142
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 28.4 bits (62), Expect = 4.9
Identities = 15/60 (25%), Positives = 21/60 (35%)
Query: 193 KPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 252
+P + +I+SS + SSAE + LLS E I HG
Sbjct: 316 QPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHG 375
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease,
transferase; 2.25A {Burkholderia phymatum}
Length = 412
Score = 28.2 bits (64), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 2 PGEKYEVVISGVGGVFPECHSFHEFRELLFSGKSGV 37
PG VVI+G+GGV + E L +G++ V
Sbjct: 2 PGSMKRVVITGMGGVTALGSRWDEIEAALKAGRNAV 37
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 26.3 bits (58), Expect = 6.5
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 108 IGLGYKQMKDMLADYPTIEIAC---HNASDSCTLSGPSADVEALVESL 152
IG + ++ ++ + + I + SD+ + GPS+DVE + L
Sbjct: 32 IGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQL 79
>3hc7_A Gene 12 protein, GP12; alpha/beta sandwich, cell adhesion; 2.00A
{Mycobacterium phage D29}
Length = 254
Score = 27.4 bits (60), Expect = 7.7
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 137 TLSGPSADVEALVESLVAQGIFARAVNVANIAYHSRYIAPAAPRLLQYLKKV 188
P + AL +++ F + + H PA +++L+++
Sbjct: 207 LGQRPITEGIALAGAIIDALTFFARSRMGDKWPHLYNRYPA----VEFLRQI 254
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 27.5 bits (62), Expect = 8.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGV 37
VVI+GVG P + +F ELL SG++
Sbjct: 5 VVITGVGVRAPGGNGTRQFWELLTSGRTAT 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,034,652
Number of extensions: 374799
Number of successful extensions: 1037
Number of sequences better than 10.0: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 58
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)