RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11500
(387 letters)
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Streptomyces coelicolor
A3(2) [TaxId: 100226]}
Length = 62
Score = 44.0 bits (104), Expect = 6e-07
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 102 DGKMAAI-GLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGIFAR 160
+ M+A+ G + L + A N + +G + AL E
Sbjct: 1 ETGMSALLGGDPEVSVAHLERL-GLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVV 59
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 46.0 bits (108), Expect = 3e-06
Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 8/175 (4%)
Query: 98 TDTIDGKMAAIGLGYKQMKDMLADYPTIEIACHNASDSCTLSGPSADVEALVESLVAQGI 157
T + + ++ +A H+ + L A LV
Sbjct: 57 TWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRG 116
Query: 158 FARAVNVANIAYHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTS 217
V + H + PAA +L L K+ + + + +++ + A
Sbjct: 117 KFMQEAVPEVPSHCALMKPAADKLAVELAKITFNA---PTVPVVNNVDVKCETNGDA--- 170
Query: 218 SAEYHTNNLLSSVFFEEASAHIPANAI--CIEIAPHGLLQAILKRSLAEKEVVNI 270
+ L + V + ++ ++ A + E+ P +L + KR + +
Sbjct: 171 IRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASAL 225
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 41.4 bits (96), Expect = 8e-05
Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 3/135 (2%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGLVDILFALGITPDGIVGHSV 67
VV++G+G + P ++ + L +G+SG+++ + +
Sbjct: 4 VVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYAT---KFAGLVKDFNCEDI 60
Query: 68 GELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLGYKQMKDMLADYPTIEI 127
F ++ A + +E + +G L + +
Sbjct: 61 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSL 120
Query: 128 ACHNASDSCTLSGPS 142
PS
Sbjct: 121 MNGGPRKISPFFVPS 135
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 41.1 bits (95), Expect = 1e-04
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGL 48
VV++G+G + P ++ ++ + L G++G+ R
Sbjct: 4 VVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQ 44
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Escherichia coli [TaxId:
562]}
Length = 70
Score = 37.5 bits (87), Expect = 1e-04
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 103 GKMAAI-GLGYKQMKDMLADYPT---IEIACHNASDSCTLSGPSADVEALVESLVAQGI 157
G MAAI GL + + + N+ ++G VE + A G
Sbjct: 3 GAMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGA 61
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 40.5 bits (93), Expect = 1e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWP 45
V+I+GVG V P + + G+ G+ R
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDV 39
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 40.7 bits (94), Expect = 2e-04
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGL 48
VI+G+G V ++ E L G+SG+T G+
Sbjct: 4 AVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM 44
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 40.1 bits (93), Expect = 2e-04
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWPIGLVDILFALGITPDGIVGHSV 67
VV++G+G + P F + +GKSGV R+ + + A + D
Sbjct: 4 VVVTGLGALTPIGVGQEAFHKAQLAGKSGVR-PITRFDASALPVRIAAEVDVDPGAYLDR 62
Query: 68 GELGCAYADGCFTAEQMILAAHARGKASIETDTIDGKMAAIGLG 111
E F +I A A A ++ + +D + +G
Sbjct: 63 KE---LRRLDRFVQYALIAAQLALEDAGLKPEDLDPERVGTLVG 103
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 39.6 bits (91), Expect = 2e-04
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVTVDNRRWP 45
VVI+GVG P + +F ELL SG++ + P
Sbjct: 3 VVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDP 40
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 39.9 bits (92), Expect = 2e-04
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 169 YHSRYIAPAAPRLLQYLKKVIPSPKPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS 228
+H+R++APA +L + K +P ++S+ T + + +
Sbjct: 139 FHTRHMAPAVDKLAEAAK--ALTPADPKVTYVSNKDGRAVAS----GTEVLDRLVGQVAN 192
Query: 229 SVFFEEASAHIPANAI--CIEIAPHGLLQAILKRSLAEKEVVNIP 271
V ++ + IE+ P G L + KR+L + + +
Sbjct: 193 PVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALK 237
Score = 32.6 bits (73), Expect = 0.066
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 47 GLVDILFALGITPDGIVGHSVGELGCAYADGCFTAEQM 84
V G TP + GHSVGE+ A G
Sbjct: 79 TSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAA 116
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 38.8 bits (89), Expect = 7e-04
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVT-VDNRRWPIGLVD 50
VV++G+G V P L G+ G+ + + D
Sbjct: 3 VVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFD 46
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 38.3 bits (88), Expect = 8e-04
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 8 VVISGVGGVFPECHSFHEFRELLFSGKSGVT 38
VV++G G P ++ EF L +GK G+
Sbjct: 11 VVVTGYGVTSPIGNTPEEFWNSLATGKIGIG 41
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga
maritima [TaxId: 2336]}
Length = 217
Score = 30.6 bits (69), Expect = 0.22
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 73 AYADGCFTAEQMILAAHARGKASIETDTIDGK--MAAIGLGYKQMK 116
+ F EQ++L A+G + I GY + +
Sbjct: 75 ELVEYGFQGEQIVLFLTAQGFGTCWMARSPHPDVPYIIVFGYPRTR 120
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 57
Score = 25.8 bits (57), Expect = 1.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 106 AAIGLGYKQMKDMLADYPTIEIACH 130
A +GLG K+++DM+ + E CH
Sbjct: 12 AILGLGKKEIQDMIEEDGQAEAVCH 36
>d1ftpa_ b.60.1.2 (A:) Fatty acid-binding protein {Desert locust
(Schistocerca gregaria) [TaxId: 7010]}
Length = 133
Score = 27.1 bits (60), Expect = 2.0
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 96 IETDTIDGKMAAIGLGYKQMKDMLADYPTIEIACHN 131
+ M AIG+G + K LA P IE+ +
Sbjct: 12 DSQTNFEEYMKAIGVGAIERKAGLALSPVIELEILD 47
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 62
Score = 25.4 bits (56), Expect = 2.3
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 108 IGLGYKQMKDMLADYPTIEIACH 130
L +++ +LA+ I++ C
Sbjct: 19 KTLPDEEVDSILAEDGEIDMHCD 41
>d1hmsa_ b.60.1.2 (A:) Muscle fatty acid binding protein (m-fabp)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 26.3 bits (58), Expect = 3.6
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 96 IETDTIDGKMAAIGLGYKQMKDMLADYPTIEI 127
+++ D M ++G+G+ + PT I
Sbjct: 11 VDSKNFDDYMKSLGVGFATRQVASMTKPTTII 42
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 26.4 bits (57), Expect = 6.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 332 LSELEVQIKSYPADEEFAGLFHEVYKTNVNRHT 364
L ELE K + DEEF + KT R T
Sbjct: 19 LKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPT 51
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 26.0 bits (56), Expect = 8.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 332 LSELEVQIKSYPADEEFAGLFHEVYKTNVNRHT 364
L++LE S D EF F ++ K R T
Sbjct: 24 LNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPT 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,436,863
Number of extensions: 66760
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 23
Length of query: 387
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,213,086
Effective search space: 363925800
Effective search space used: 363925800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)