BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11501
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 9 CGPGRFGQNCSQECQ-CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRC 67
C ++G C+ C C N CH TGEC C PGF G CE+ C T G +C RC
Sbjct: 189 CEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSG 248
Query: 68 QNG----AICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGEC 123
Q G C P C CA GW G CN C PG +G C + C C NG C G C
Sbjct: 249 QEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-C 307
Query: 124 QCEPGFKG 131
C PG++G
Sbjct: 308 LCSPGWQG 315
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQ----CRNGAECHPATGECSCQPGFTGSLCEERCPPGT 56
MG CE+ C FG+ C + C C++ C P CSC G+ G C E C PG
Sbjct: 225 MGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGF 284
Query: 57 HGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 107
+GP C RC C NG +C+ G CLC+PGW G C P M + +P
Sbjct: 285 YGPDCKLRCSCNNGEMCDRFQG-CLCSPGWQGLQCEREGIPRMTPKIVDLP 334
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 95 CTPGMWGQGCTVPCE-CFNGASCHHVTGECQCEPGFKGQ 132
C WG C C C N CH TGEC C PGF G+
Sbjct: 189 CEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGR 227
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 8 VCGPGRFGQNCSQ---ECQCRNGAECHPATGECSCQPGFTGSLCE-ERCP-PGTHGPSCI 62
+C PG +G NC + C NG C G+C C PG G CE +CP P +G CI
Sbjct: 200 ICPPGFYGVNCDKANCSTTCFNGGTCF-YPGKCICPPGLEGEQCEISKCPQPCRNGGKCI 258
Query: 63 --NRCRCQNGA--------ICNPANG---------QCLCAPGWMGSVCNVPCTPGMWG 101
++C+C G +C P G +C C GW G CN + G
Sbjct: 259 GKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIG 316
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 35/131 (26%)
Query: 24 CRNGAECHPATGECSCQPGFTGSLCEER-------------------CPPGTHGPSCIN- 63
CRNG C+ C C GF G CE+ CPPG +G +C
Sbjct: 155 CRNGGFCNERR-ICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKA 213
Query: 64 --RCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG 121
C NG C G+C+C PG G C + C PC NG C +
Sbjct: 214 NCSTTCFNGGTCF-YPGKCICPPGLEGEQCEI--------SKCPQPCR--NGGKCIGKS- 261
Query: 122 ECQCEPGFKGQ 132
+C+C G++G
Sbjct: 262 KCKCSKGYQGD 272
>pdb|2P28|B Chain B, Structure Of The Phe2 And Phe3 Fragments Of The Integrin
Beta2 Subunit
Length = 217
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 23 QCRNGAECHPAT----GECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG 78
Q R+ + CH G C C G+ G CE + G CR N +I G
Sbjct: 91 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQ-TQGRSSQELEGSCRKDNNSIICSGLG 149
Query: 79 QCLCAPGWMGSVCNVPCTPG--MWGQGC---TVPCECFNGASCHH------VTGECQCEP 127
C+C +C+ PG ++GQ C T+ CE +NG C G+C+C P
Sbjct: 150 DCVCGQ----CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHP 205
Query: 128 GFKG 131
GF+G
Sbjct: 206 GFEG 209
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 23 QCRNGAECHPAT----GECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG 78
Q R+ + CH G C C G+ G CE + G CR N +I G
Sbjct: 430 QSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQ-GRSSQELEGSCRKDNNSIICSGLG 488
Query: 79 QCLCAPGWMGSVCNVPCTPG--MWGQGC---TVPCECFNGASCHH------VTGECQCEP 127
C+C +C+ PG ++GQ C T+ CE +NG C G+C+C P
Sbjct: 489 DCVCGQ----CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHP 544
Query: 128 GFKG 131
GF+G
Sbjct: 545 GFEG 548
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 4 HCEEVCGPGRFGQNC---SQECQCRNGAECH-PATG-----ECSCQPGFTGSLCE-ERCP 53
H +V G +GQ C + C+ NG C P G +C C PGF GS C+ ER
Sbjct: 498 HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTT 557
Query: 54 PGTHGPSCIN-----RCRC 67
G P + RCRC
Sbjct: 558 EGCLNPRRVECSGRGRCRC 576
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 15 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGA 71
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 388 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 434
Query: 72 ICNPANGQCLCAPGWMGSVC 91
+C N +CLC G++G C
Sbjct: 435 VCVRPN-KCLCKKGYLGPQC 453
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 15 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGA 71
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 388 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 434
Query: 72 ICNPANGQCLCAPGWMGSVC 91
+C N +CLC G++G C
Sbjct: 435 VCVRPN-KCLCKKGYLGPQC 453
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 15 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGA 71
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 388 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 434
Query: 72 ICNPANGQCLCAPGWMGSVC 91
+C N +CLC G++G C
Sbjct: 435 VCVRPN-KCLCKKGYLGPQC 453
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 15 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGA 71
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 409 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 455
Query: 72 ICNPANGQCLCAPGWMGSVC 91
+C N +CLC G++G C
Sbjct: 456 VCVRPN-KCLCKKGYLGPQC 474
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 15 GQNCSQECQ--CRNGAECHPATGECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGA 71
Q + EC CRNG C P TG+C C PG+ G C +C P C++G
Sbjct: 409 AQTLTSECSRLCRNGY-CTP-TGKCCCSPGWEGDFCRTAKCEPA-----------CRHGG 455
Query: 72 ICNPANGQCLCAPGWMGSVC 91
+C N +CLC G++G C
Sbjct: 456 VCVRPN-KCLCKKGYLGPQC 474
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--Q 79
C + +C G EC C G+TG CE P CQN A C G Q
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP-------CQNDATCLDQIGEFQ 67
Query: 80 CLCAPGWMGSVCNV 93
C+C PG+ G C V
Sbjct: 68 CICMPGYEGVHCEV 81
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 24 CRNGAECHPATGE--CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCL 81
C+N A C GE C C PG+ G CE P C++ RC + QC
Sbjct: 53 CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSP-CLHNGRCLDKI----NEFQCE 107
Query: 82 CAPGWMGSVCNVPCTPGMWGQ 102
C G+ G +C V + Q
Sbjct: 108 CPTGFTGHLCQVDLHHILDAQ 128
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--Q 79
C + +C G EC C G+TG CE P CQN A C G Q
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP-------CQNDATCLDQIGEFQ 65
Query: 80 CLCAPGWMGSVCNV 93
C+C PG+ G C V
Sbjct: 66 CICMPGYEGVHCEV 79
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 52/130 (40%), Gaps = 34/130 (26%)
Query: 7 EVCGPGRFGQ--------NCSQECQCRNGAE------CHPATGEC-SCQPGFTGSLCEER 51
E+C G FG + CQC + + C+ TGEC C G C+ R
Sbjct: 33 ELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCD-R 91
Query: 52 CPPGTHG----PSCINRCR---------CQNGAICNPANGQCLCAPGWMGSVCNVPCTPG 98
C G G P+ ++C+ Q + CNP GQC C P G C C PG
Sbjct: 92 CKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPG 150
Query: 99 MW----GQGC 104
+ GQGC
Sbjct: 151 YYNLQSGQGC 160
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 24 CRNGAEC-------HPATGECSCQPGFTGSLCEERCP 53
C NG EC +P+ C CQPGFTG+ C E P
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVP 52
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 52/130 (40%), Gaps = 34/130 (26%)
Query: 7 EVCGPGRFGQ--------NCSQECQCRNGAE------CHPATGEC-SCQPGFTGSLCEER 51
E+C G FG + CQC + + C+ TGEC C G C+ R
Sbjct: 35 ELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCD-R 93
Query: 52 CPPGTHG----PSCINRCR---------CQNGAICNPANGQCLCAPGWMGSVCNVPCTPG 98
C G G P+ ++C+ Q + CNP GQC C P G C C PG
Sbjct: 94 CKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPG 152
Query: 99 MW----GQGC 104
+ GQGC
Sbjct: 153 YYNLQSGQGC 162
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, 20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, Minimized Average Structure
Length = 63
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 24 CRNGAEC-------HPATGECSCQPGFTGSLCEERCP 53
C NG EC +P+ C CQPGFTG+ C E P
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVP 50
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 35 GECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVP 94
G+C CQ G+ G C++ P P C++ ICN QCLC W G +C+
Sbjct: 83 GDCRCQYGWQGLYCDKCIPH----PGCVH-------GICNEP-WQCLCETNWGGQLCDKD 130
Query: 95 CTPGMWGQGCTVPCECFNGASCHHV---TGECQCEPGFKG 131
C C NG +C + +C C G+ G
Sbjct: 131 LNY------CGTHQPCLNGGTCSNTGPDKYQCSCPEGYSG 164
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 73 CNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV----PCECFNGA----SCHHVTGECQ 124
C+ G C C G C+ C P WG + PC+C G SC +G+C
Sbjct: 455 CDSETGYCYCKRLVTGQRCD-QCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCS 513
Query: 125 CEPGFKGQK 133
C P G++
Sbjct: 514 CLPHMIGRQ 522
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 27 GAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCR---CQNGAICNPA----NGQ 79
G C TG C C+ TG C++ P + ++ CR C G N + +GQ
Sbjct: 452 GNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQ 511
Query: 80 CLCAPGWMGSVCN 92
C C P +G CN
Sbjct: 512 CSCLPHMIGRQCN 524
>pdb|2AW2|B Chain B, Crystal Structure Of The Human Btla-hvem Complex
pdb|2AW2|Y Chain Y, Crystal Structure Of The Human Btla-hvem Complex
Length = 108
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 31 HPATGEC--SCQPGF---------TGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG 78
+P EC C PG+ TG++CE CPPGT+ +C +C+PA G
Sbjct: 13 YPVGSECCPKCSPGYRVKEACGELTGTVCEP-CPPGTYIAHLNGLSKCLQCQMCDPAMG 70
>pdb|1JMA|B Chain B, Crystal Structure Of The Herpes Simplex Virus
Glycoprotein D Bound To The Cellular Receptor HveaHVEM
Length = 167
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 31 HPATGEC--SCQPGF---------TGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG 78
+P EC C PG+ TG++CE CPPGT+ +C +C+PA G
Sbjct: 9 YPVGSECCPKCSPGYRVKEACGELTGTVCEP-CPPGTYIAHLNGLSKCLQCQMCDPAMG 66
>pdb|4FHQ|A Chain A, Crystal Structure Of Hvem
Length = 134
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 31 HPATGEC--SCQPGF---------TGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG 78
+P EC C PG+ TG++CE CPPGT+ +C +C+PA G
Sbjct: 11 YPVGSECCPKCSPGYRVKEACGELTGTVCEP-CPPGTYIAHLNGLSKCLQCQMCDPAMG 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.546
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,305,682
Number of Sequences: 62578
Number of extensions: 235488
Number of successful extensions: 652
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 246
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)