RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11501
(133 letters)
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 85.9 bits (212), Expect = 6e-21
Identities = 52/137 (37%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQ-CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGP 59
C ++G C+ C C N CH TGEC C PGF G CE+ C T G
Sbjct: 181 FTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGR 240
Query: 60 SCINRC----RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGAS 115
+C RC C++ C P C CA GW G CN C PG +G C + C C NG
Sbjct: 241 TCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM 300
Query: 116 CHHVTGECQCEPGFKGQ 132
C G C C PG++G
Sbjct: 301 CDRFQG-CLCSPGWQGL 316
Score = 76.3 bits (187), Expect = 1e-17
Identities = 44/132 (33%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQ----CRNGAECHPATGECSCQPGFTGSLCEERCPPGT 56
MG CE+ C FG+ C + C C++ C P CSC G+ G C E C PG
Sbjct: 225 MGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGF 284
Query: 57 HGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASC 116
+GP C RC C NG +C+ G CLC+PGW G C P M + +P +
Sbjct: 285 YGPDCKLRCSCNNGEMCDRFQG-CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGK 343
Query: 117 HHVTGECQCEPG 128
+ + P
Sbjct: 344 FNPICKASGWPL 355
Score = 67.8 bits (165), Expect = 2e-14
Identities = 34/136 (25%), Positives = 45/136 (33%), Gaps = 6/136 (4%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSC 61
P + G G FT L RC GP C
Sbjct: 140 IHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTR-LIVRRCEAQKWGPEC 198
Query: 62 INRCR-CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE----CFNGASC 116
+ C C N +C+ G+C+C PG+MG C C +G+ C C C + C
Sbjct: 199 NHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC 258
Query: 117 HHVTGECQCEPGFKGQ 132
C C G+KG
Sbjct: 259 LPDPYGCSCATGWKGL 274
Score = 42.4 bits (99), Expect = 1e-05
Identities = 23/95 (24%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 39 CQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPG 98
+ G P + G G L + + C
Sbjct: 134 YKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTR-LIVRRCEAQ 192
Query: 99 MWGQGCTVPC-ECFNGASCHHVTGECQCEPGFKGQ 132
WG C C C N CH TGEC C PGF G+
Sbjct: 193 KWGPECNHLCTACMNNGVCHEDTGECICPPGFMGR 227
Score = 36.6 bits (84), Expect = 0.001
Identities = 24/109 (22%), Positives = 31/109 (28%), Gaps = 14/109 (12%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPS 60
G C E C PG +G +C C C NG C G C C PG+ G
Sbjct: 272 KGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-CLCSPGWQ-------------GLQ 317
Query: 61 CINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE 109
C + G +C P + T+
Sbjct: 318 CEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKP 366
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 69.0 bits (168), Expect = 8e-15
Identities = 31/134 (23%), Positives = 42/134 (31%), Gaps = 10/134 (7%)
Query: 4 HCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCIN 63
C Q +C NG G C C PG+ GS CE C + PS +
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNG-NGTFECGVCRCGPGWLGSQCE--CSEEDYRPSQQD 484
Query: 64 RCRCQNGAIC-----NPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHH 118
C + G GQC+C G + C + C C
Sbjct: 485 ECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC-- 542
Query: 119 VTGECQCEPGFKGQ 132
G+C C+ + G
Sbjct: 543 SCGDCLCDSDWTGY 556
Score = 67.0 bits (163), Expect = 3e-14
Identities = 31/137 (22%), Positives = 40/137 (29%), Gaps = 14/137 (10%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAEC-----HPATGECSCQPGFTGSLCEERCPPGT 56
G+ CE C + + EC R G G+C C G + + C
Sbjct: 468 GSQCE--CSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDD 525
Query: 57 HGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASC 116
C C+ G CLC W G CN + C C
Sbjct: 526 FSCVRYKGEMCSGHGQCS--CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583
Query: 117 HHVTGECQC-EPGFKGQ 132
G C C +PG G
Sbjct: 584 ----GSCVCIQPGSYGD 596
Score = 52.8 bits (126), Expect = 3e-09
Identities = 27/147 (18%), Positives = 37/147 (25%), Gaps = 23/147 (15%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPS 60
G + C F + C +C G+C C +TG C T S
Sbjct: 513 FGKITGKYCECDDFSCVRYKGEMCSGHGQCS--CGDCLCDSDWTGYYCNCTTRTDTCMSS 570
Query: 61 CINRCRCQNGAICNPANGQCLC-APGWMGSVCN---------------VPCTPGMWGQGC 104
C + C G C+C PG G C V C G
Sbjct: 571 NGLLCSGRGKCEC----GSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALH 626
Query: 105 TVPCECFNGASCHHVTGECQCEPGFKG 131
C + + + G
Sbjct: 627 DENT-CNRYCRDEIESVKELKDTGKDA 652
Score = 48.9 bits (116), Expect = 7e-08
Identities = 30/133 (22%), Positives = 41/133 (30%), Gaps = 12/133 (9%)
Query: 9 CGPGRFGQNCSQECQCR-NGAECHPATGECSCQPGFTGSLCEE---RCPPGTHGPSCINR 64
C + G S + + G GF SL + C + N
Sbjct: 386 CMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNS 445
Query: 65 CRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHH-----V 119
RC NG G C C PGW+GS C C+ + C G +
Sbjct: 446 HRCNNGN-GTFECGVCRCGPGWLGSQCE--CSEEDYRPSQQDECSPREGQPVCSQRGECL 502
Query: 120 TGECQCEPGFKGQ 132
G+C C G+
Sbjct: 503 CGQCVCHSSDFGK 515
Score = 41.6 bits (97), Expect = 2e-05
Identities = 24/114 (21%), Positives = 31/114 (27%), Gaps = 10/114 (8%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSC-QPGFTGSLCEERC---PPGT 56
G +C + C R EC G C C QPG G CE+ T
Sbjct: 554 TGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVCIQPGSYGDTCEKCPTCPDACT 609
Query: 57 HGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC 110
C+ + GA+ + C G CT E
Sbjct: 610 FKKECVECKKFDRGALHD--ENTCNRYCRDEIESVKELKDTGKDAVNCTYKNED 661
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 64.7 bits (157), Expect = 2e-13
Identities = 33/150 (22%), Positives = 47/150 (31%), Gaps = 19/150 (12%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCE----------ER 51
+ E C G C G+C C+ G C+
Sbjct: 374 DPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE 433
Query: 52 CPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV----P 107
P G +C G C+ G C C G C+ C P WG + P
Sbjct: 434 DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ-CLPQHWGLSNDLDGCRP 492
Query: 108 CECFNGAS----CHHVTGECQCEPGFKGQK 133
C+C G + C +G+C C P G++
Sbjct: 493 CDCDLGGALNNSCSEDSGQCSCLPHMIGRQ 522
Score = 59.7 bits (144), Expect = 1e-11
Identities = 28/144 (19%), Positives = 36/144 (25%), Gaps = 22/144 (15%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPS 60
+ + C G+NC Q C+P C G
Sbjct: 340 VSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP----------CTCDPAGSE 389
Query: 61 CINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECF--------- 111
C GQC C G C+ C G + P C
Sbjct: 390 NGGICDGYTDFSVGLIAGQCRCKLHVEGERCD-VCKEGFYDLSAEDPYGCKSCACNPLGT 448
Query: 112 --NGASCHHVTGECQCEPGFKGQK 133
G C TG C C+ GQ+
Sbjct: 449 IPGGNPCDSETGYCYCKRLVTGQR 472
Score = 54.7 bits (131), Expect = 6e-10
Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 10/125 (8%)
Query: 9 CGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQ 68
N ++C C + G + C T G +C
Sbjct: 305 RPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFY 364
Query: 69 NGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPG 128
LC PCT G C+ + S + G+C+C+
Sbjct: 365 FQHPERDIRDPNLC----------EPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLH 414
Query: 129 FKGQK 133
+G++
Sbjct: 415 VEGER 419
Score = 51.2 bits (122), Expect = 1e-08
Identities = 17/116 (14%), Positives = 26/116 (22%), Gaps = 9/116 (7%)
Query: 22 CQCRNGAECHPATGECSCQPGFTGSLCEERCP---------PGTHGPSCINRCRCQNGAI 72
N G C C+ G CE + +C C +
Sbjct: 266 VDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSS 325
Query: 73 CNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPG 128
+ A G + C G+ C + + CEP
Sbjct: 326 SCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPC 381
Score = 49.7 bits (118), Expect = 4e-08
Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 7 EVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCIN--- 63
G C+ G C TG C C+ TG C ++C P G S
Sbjct: 432 AEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRC-DQCLPQHWGLSNDLDGC 490
Query: 64 -RCRCQN----GAICNPANGQCLCAPGWMGSVCN 92
C C C+ +GQC C P +G CN
Sbjct: 491 RPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 28.9 bits (64), Expect = 0.56
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 2 GTHCEEVCGPGRFGQNCS----QECQCRN----GAECHPATGECSCQPGFTGSLCEE 50
G C++ C P +G + + C C C +G+CSC P G C E
Sbjct: 470 GQRCDQ-CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 56.6 bits (136), Expect = 1e-10
Identities = 31/138 (22%), Positives = 41/138 (29%), Gaps = 12/138 (8%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECH-----PATGECSCQPGFTGSLCE--ERCPP 54
G +CE GR Q C+ N + G+C C + C
Sbjct: 456 GKNCECQT-QGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCEC 514
Query: 55 GTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGA 114
T N C G+C C PG+ GS C C G EC
Sbjct: 515 DTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ--CERTTEGCLNPRRVECSGRG 572
Query: 115 SCHHVTGECQCEPGFKGQ 132
C C+C G++
Sbjct: 573 RC--RCNVCECHSGYQLP 588
Score = 53.6 bits (128), Expect = 2e-09
Identities = 32/138 (23%), Positives = 43/138 (31%), Gaps = 12/138 (8%)
Query: 5 CEEVCGPGRFGQNCSQECQCRNGAECH----PATGECSCQPGFTGSLCEERCPPGTHGPS 60
+ V C Q R+ + CH G C C G+ G CE + G
Sbjct: 412 TDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQT-QGRSSQE 470
Query: 61 CINRCRCQNGAIC-----NPANGQCLCAPGWMGSVCN--VPCTPGMWGQGCTVPCECFNG 113
CR N +I + GQCLC + C C
Sbjct: 471 LEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 530
Query: 114 ASCHHVTGECQCEPGFKG 131
G+C+C PGF+G
Sbjct: 531 GRGLCFCGKCRCHPGFEG 548
Score = 46.6 bits (110), Expect = 4e-07
Identities = 20/133 (15%), Positives = 30/133 (22%), Gaps = 23/133 (17%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPS 60
G+ C+ C G + +C C C C G+ LC+E
Sbjct: 547 EGSACQ--CERTTEGCLNPRRVECSGRGRCR--CNVCECHSGYQLPLCQECP---GCPSP 599
Query: 61 CINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVT 120
C C G G C+ C C
Sbjct: 600 CGKYISCAEC---------LKFEKGPFGKNCSAACPGLQLSNNPVKGRTC-------KER 643
Query: 121 GECQCEPGFKGQK 133
C + ++
Sbjct: 644 DSEGCWVAYTLEQ 656
Score = 42.0 bits (98), Expect = 1e-05
Identities = 12/100 (12%), Positives = 24/100 (24%), Gaps = 8/100 (8%)
Query: 8 VCGPGRFGQNCSQECQCRNGAECHPATGE-CSCQPGFTGSLCEERCPPGTHGPSCINRCR 66
C G C + C + + + E + G G C CP + +
Sbjct: 580 ECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRT 639
Query: 67 CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTV 106
C+ C + + ++
Sbjct: 640 CKE-------RDSEGCWVAYTLEQQDGMDRYLIYVDESRE 672
Score = 41.2 bits (96), Expect = 3e-05
Identities = 23/118 (19%), Positives = 32/118 (27%), Gaps = 8/118 (6%)
Query: 8 VCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRC 67
+ P F + + + A G CE RC +R C
Sbjct: 383 INVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRC-----RDQSRDRSLC 437
Query: 68 QNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQC 125
G C C G++G C G Q C N + G+C C
Sbjct: 438 HGKGFLE--CGICRCDTGYIGKNCECQT-QGRSSQELEGSCRKDNNSIICSGLGDCVC 492
Score = 29.3 bits (65), Expect = 0.34
Identities = 7/58 (12%), Positives = 14/58 (24%), Gaps = 7/58 (12%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHG 58
G +C C + N + C+ C +T + +
Sbjct: 617 FGKNCSAACPGLQLSNNPVKGRTCKE-------RDSEGCWVAYTLEQQDGMDRYLIYV 667
Score = 28.9 bits (64), Expect = 0.46
Identities = 15/98 (15%), Positives = 21/98 (21%)
Query: 34 TGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNV 93
T + C G T G I C + A G+ V
Sbjct: 359 TYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQ 418
Query: 94 PCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKG 131
G C+C+ G+ G
Sbjct: 419 VLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIG 456
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 49.1 bits (117), Expect = 5e-08
Identities = 39/134 (29%), Positives = 52/134 (38%), Gaps = 26/134 (19%)
Query: 2 GTHCEEVCGPGRFGQNCSQEC---QCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHG 58
G + F + C Q CRNG C+ C C GF G CE+
Sbjct: 130 GNTILKTPQNAIFFKTCQQAECPGGCRNGGFCN-ERRICECPDGFHGPHCEKALCT---- 184
Query: 59 PSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHH 118
RC NG +C G C+C PG+ G C+ CFNG +C +
Sbjct: 185 ------PRCMNGGLCV-TPGFCICPPGFYGVNCDKANC----------STTCFNGGTCFY 227
Query: 119 VTGECQCEPGFKGQ 132
G+C C PG +G+
Sbjct: 228 -PGKCICPPGLEGE 240
Score = 45.6 bits (108), Expect = 8e-07
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 26/128 (20%)
Query: 8 VCGPGRFGQNCSQEC---QCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINR 64
+C PG +G NC + C NG C G+C C PG G CE P
Sbjct: 200 ICPPGFYGVNCDKANCSTTCFNGGTCF-YPGKCICPPGLEGEQCEISKCP---------- 248
Query: 65 CRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQ 124
C+NG C +C C+ G+ G +C+ P C +CH +CQ
Sbjct: 249 QPCRNGGKCI-GKSKCKCSKGYQGDLCSKPVC----------EPGCGAHGTCHE-PNKCQ 296
Query: 125 CEPGFKGQ 132
C+ G+ G+
Sbjct: 297 CQEGWHGR 304
Score = 42.1 bits (99), Expect = 1e-05
Identities = 28/138 (20%), Positives = 34/138 (24%), Gaps = 18/138 (13%)
Query: 1 MGTHCEEVCGPGRFGQNC---SQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTH 57
M V G C + A G+ +
Sbjct: 83 MADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIF 142
Query: 58 GPSCINRC---RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGA 114
+C C+NG CN C C G+ G C C NG
Sbjct: 143 FKTCQQAECPGGCRNGGFCN-ERRICECPDGFHGPHCEKALC----------TPRCMNGG 191
Query: 115 SCHHVTGECQCEPGFKGQ 132
C G C C PGF G
Sbjct: 192 LCVT-PGFCICPPGFYGV 208
Score = 32.5 bits (74), Expect = 0.023
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 8 VCGPGRFGQNCSQ---ECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSC 61
C G G CS+ E C CH +C CQ G+ G C +R G
Sbjct: 264 KCSKGYQGDLCSKPVCEPGCGAHGTCH-EPNKCQCQEGWHGRHCNKRYEASLIGTKH 319
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 46.1 bits (108), Expect = 6e-07
Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 20/139 (14%)
Query: 3 THCEEVCGPGRFGQNCSQECQCRNGAECHPA-TGECS----------CQPGFTGSLCEER 51
+HC++VC C+ E C CH G CS C+ + C E
Sbjct: 186 SHCQKVCPTICKSHGCTAEGLC-----CHSECLGNCSQPDDPTKCVACRNFYLDGRCVET 240
Query: 52 CPPGT---HGPSCINRCRCQNG-AICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 107
CPP C+N CQ+ C + Q + C C G +
Sbjct: 241 CPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLL 300
Query: 108 CECFNGASCHHVTGECQCE 126
C G +
Sbjct: 301 CTPCLGPCPKVCHLLEGEK 319
Score = 27.6 bits (60), Expect = 1.4
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 48 CEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 107
C + CP + + C I +C W S C C GCT
Sbjct: 155 CGDICPG-----TAKGKTNCPATVINGQFVERC-----WTHSHCQKVCPTICKSHGCTAE 204
Query: 108 CECFNGASCH 117
C CH
Sbjct: 205 GLC-----CH 209
Score = 26.0 bits (56), Expect = 4.4
Identities = 22/120 (18%), Positives = 31/120 (25%), Gaps = 15/120 (12%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSC 61
C E C P + Q+ +C N + C S + H C
Sbjct: 234 DGRCVETCPPPYYH---FQDWRCVNFSFCQ------DLHHKCKNSRRQGCHQYVIHNNKC 284
Query: 62 INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG 121
I C +G N +N C G C C + C + G
Sbjct: 285 IP--ECPSGYTMNSSNLLCTPCLG----PCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 46.1 bits (108), Expect = 7e-07
Identities = 19/110 (17%), Positives = 26/110 (23%), Gaps = 10/110 (9%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPS 60
+ + + QN C+N +C C C+ C P P
Sbjct: 31 LSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLF--PK 88
Query: 61 CINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC 110
C C L G C P + C CE
Sbjct: 89 KSYECLTS----CEFLKYILLVKQGD----CPAPEKASGFAAACVESCEV 130
Score = 38.0 bits (87), Expect = 4e-04
Identities = 19/107 (17%), Positives = 26/107 (24%), Gaps = 10/107 (9%)
Query: 27 GAECHPATGECSCQPGFTGSLCEERC---------PPGTHGPSCINRCRCQNGAICNPAN 77
GA E + C RC H + + CQN C+
Sbjct: 5 GAAAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCL 64
Query: 78 GQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCEC-FNGASCHHVTGEC 123
C + C C P + C F G+C
Sbjct: 65 EPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDC 111
Score = 28.8 bits (63), Expect = 0.51
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 18/86 (20%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQC-------RNGAECHPAT----GECSCQPGFTGSLCEE 50
C + C + C+ + + C P EC F +
Sbjct: 47 NNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLV 106
Query: 51 R---CPPGTH----GPSCINRCRCQN 69
+ CP +C+ C N
Sbjct: 107 KQGDCPAPEKASGFAAACVESCEVDN 132
Score = 26.5 bits (57), Expect = 3.5
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 59 PSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHH 118
+ R RC + + + + V C C PC+
Sbjct: 18 AGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKE--SGDLRK 75
Query: 119 VTGECQCEPGFKGQK 133
+ CEP F +
Sbjct: 76 HQCQSFCEPLFPKKS 90
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 45.6 bits (107), Expect = 1e-06
Identities = 25/127 (19%), Positives = 36/127 (28%), Gaps = 21/127 (16%)
Query: 8 VCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCE-ERCPPGTHGPSCINRC- 65
C G +C + + G P + P G+ C N
Sbjct: 316 ECEHNTTGPDCGKCKKNYQGRPWSPGS----YLPIPKGAANACIPSISSIGTNVCDNELL 371
Query: 66 RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQC 125
CQNG C+ N +CLC + G +C C SC +G+
Sbjct: 372 HCQNGGTCHN-NVRCLCPAAYTGILCE--------------KLRCEEAGSCGSDSGQGAP 416
Query: 126 EPGFKGQ 132
G
Sbjct: 417 PHGTHHH 423
Score = 38.7 bits (89), Expect = 2e-04
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 15/84 (17%)
Query: 5 CEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINR 64
C ++ C+NG CH C C +TG LCE +
Sbjct: 354 CIPSISSIGTNVCDNELLHCQNGGTCHN-NVRCLCPAAYTGILCE--------------K 398
Query: 65 CRCQNGAICNPANGQCLCAPGWMG 88
RC+ C +GQ G
Sbjct: 399 LRCEEAGSCGSDSGQGAPPHGTHH 422
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 40.7 bits (96), Expect = 2e-05
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 32/121 (26%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCR---CQNGAICNPANG 78
C + +C G EC C G+TG CE +N C CQN A C G
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEID----------VNECVSNPCQNDATCLDQIG 64
Query: 79 --QCLCAPGWMGSVCNV---PCTPGMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKG 131
QC+C PG+ G C V C C + C +C+C GF G
Sbjct: 65 EFQCICMPGYEGVHCEVNTDECASSP----------CLHNGRCLDKINEFQCECPTGFTG 114
Query: 132 Q 132
Sbjct: 115 H 115
Score = 38.7 bits (91), Expect = 9e-05
Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 9 CGPGRFGQNCSQ---ECQ---CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPS 60
C G G C EC C+N A C G +C C PG+ G CE
Sbjct: 32 CLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN--------- 82
Query: 61 CINRCR---CQNGAICNPANG--QCLCAPGWMGSVC 91
+ C C + C QC C G+ G +C
Sbjct: 83 -TDECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 117
Score = 29.5 bits (67), Expect = 0.20
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 8 VCGPGRFGQNCSQ---ECQ---CRNGAECHPATG--ECSCQPGFTGSLCEE 50
+C PG G +C EC C + C +C C GFTG LC+
Sbjct: 69 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 40.4 bits (95), Expect = 3e-05
Identities = 35/153 (22%), Positives = 47/153 (30%), Gaps = 35/153 (22%)
Query: 8 VCGPGRFGQNCSQECQCR---NGAECHPATGECSCQPGFTGSLCEE-------------- 50
C +G C++ C+ R G G +C G+ G C
Sbjct: 20 TCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSC 79
Query: 51 ------RCPPGTHGPSCINRCR--CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQ 102
RC G G C ICN QCLC W G +C+
Sbjct: 80 KLPGDCRCQYGWQGLYCDKCIPHPGCVHGICN-EPWQCLCETNWGGQLCDKDLNY----- 133
Query: 103 GCTVPCECFNGASCHHV---TGECQCEPGFKGQ 132
C C NG +C + +C C G+ G
Sbjct: 134 -CGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
Score = 36.6 bits (85), Expect = 8e-04
Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 21/109 (19%)
Query: 24 CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCA 83
+ +C + G C + C P G NG C
Sbjct: 7 HHHHGSIE-GRSAVTCDDYYYGFGCNKFCRP----------RDDFFGHYACDQNGNKTCM 55
Query: 84 PGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQ 132
GWMG CN C C SC + G+C+C+ G++G
Sbjct: 56 EGWMGPECNRAI--------CRQGC-SPKHGSC-KLPGDCRCQYGWQGL 94
Score = 34.6 bits (80), Expect = 0.003
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 8 VCGPGRFGQNCSQ--ECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRC 65
C G G C + C+ +C C+ + G LC++ C+N
Sbjct: 86 RCQYGWQGLYCDKCIPHPGCVHGICN-EPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGG 144
Query: 66 RCQNGAICNPANGQCLCAPGWMGSVCNV 93
C N P QC C G+ G C +
Sbjct: 145 TCSNT---GPDKYQCSCPEGYSGPNCEI 169
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 39.7 bits (93), Expect = 4e-05
Identities = 29/132 (21%), Positives = 37/132 (28%), Gaps = 33/132 (25%)
Query: 24 CRNGAECHPATGE----CSCQPGFTGSLCEERCPPGTHGPSCINRCR-----CQNGAICN 74
C NG C P + C C GFT C + + C NG C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 75 PANG---------QCLCAPGWMGSVCNV---PCTPGMWGQGCTVPCECFNGASCHHVTG- 121
+ C C G+ G C C C NG C +
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP----------CKNGGICTDLVAN 117
Query: 122 -ECQCEPGFKGQ 132
C+C F G+
Sbjct: 118 YSCECPGEFMGR 129
Score = 34.7 bits (80), Expect = 0.002
Identities = 28/109 (25%), Positives = 34/109 (31%), Gaps = 29/109 (26%)
Query: 2 GTHCEEV--CGPGRFGQNCSQECQ---CRNGAECHPATG---------ECSCQPGFTGSL 47
+C V + C C NG C + C C GF G
Sbjct: 33 DPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIH 92
Query: 48 CEERCPPGTHGPSCINRCR---CQNGAICN--PANGQCLCAPGWMGSVC 91
C+ IN C C+NG IC AN C C +MG C
Sbjct: 93 CQHN----------INECEVEPCKNGGICTDLVANYSCECPGEFMGRNC 131
Score = 27.0 bits (60), Expect = 1.3
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 8 VCGPGRFGQNCSQ---ECQ---CRNGAECHPATG--ECSCQPGFTGSLCEERC 52
C G G +C EC+ C+NG C C C F G C+ +
Sbjct: 83 KCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKG 135
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 39.2 bits (91), Expect = 1e-04
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 23 QCRNGAECHPATGECSCQPGFTGSLCEE-RCPPGTHGPSCINRCRCQNGAICNPANGQCL 81
CRNG TG+C C PG+ G C +C P C++G +C N +CL
Sbjct: 398 LCRNGYCT--PTGKCCCSPGWEGDFCRTAKCEPA-----------CRHGGVCVRPN-KCL 443
Query: 82 CAPGWMGSVC 91
C G++G C
Sbjct: 444 CKKGYLGPQC 453
Score = 33.8 bits (77), Expect = 0.011
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 53 PPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVP-CTPGMWGQGCTVPCECF 111
P T C CR NG G+C C+PGW G C C P C
Sbjct: 387 PAQTLTSECSRLCR--NGYCTP--TGKCCCSPGWEGDFCRTAKCEP-----------ACR 431
Query: 112 NGASCHHVTGECQCEPGFKGQK 133
+G C +C C+ G+ G +
Sbjct: 432 HGGVCVR-PNKCLCKKGYLGPQ 452
Score = 31.5 bits (71), Expect = 0.055
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 8 VCGPGRFGQNCSQ---ECQCRNGAECHPATGECSCQPGFTGSLCEE 50
C PG G C E CR+G C +C C+ G+ G CE+
Sbjct: 411 CCSPGWEGDFCRTAKCEPACRHGGVC-VRPNKCLCKKGYLGPQCEQ 455
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 36.6 bits (85), Expect = 7e-04
Identities = 26/122 (21%), Positives = 32/122 (26%), Gaps = 22/122 (18%)
Query: 5 CEEVCGPGRFGQNCSQEC------QCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGT 56
E + C NG C EC CQ GF G CE
Sbjct: 31 VFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA---- 86
Query: 57 HGPSCINRCRCQNGAICNPANG-QCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGAS 115
I RC+ + C C G+ + C P VP C +
Sbjct: 87 --TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP-------AVPFPCGRVSV 137
Query: 116 CH 117
H
Sbjct: 138 SH 139
Score = 29.2 bits (66), Expect = 0.24
Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 18/100 (18%)
Query: 37 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVCNVP 94
+ + P C NG +C +C C G+ G C +
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNP-------CLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Query: 95 CTPGMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKGQ 132
T C + C C G++
Sbjct: 86 AT-------CNIKNGRCKQFCKTGADSKVLCSCTTGYRLA 118
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 36.8 bits (84), Expect = 0.001
Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 10/135 (7%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCR------NGAECHPATGECSCQPGFTGSLCEERCPPG 55
+HC++VC C+ E C N ++ T +C+ + C E CPP
Sbjct: 185 HSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPP 244
Query: 56 T---HGPSCINRCRCQNG-AICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECF 111
C+N CQ+ C + Q + C C G + C
Sbjct: 245 YYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPC 304
Query: 112 NGASCHHVTGECQCE 126
G +
Sbjct: 305 LGPCPKVCHLLEGEK 319
Score = 29.8 bits (66), Expect = 0.23
Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHP----ATGECSCQPGFTGSLCEERCPPGT 56
+ C E C P + + + H + + Q + C CP G
Sbjct: 233 LDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGY 292
Query: 57 HGPSCINRCRCQNGAICNPANGQCLC 82
S C G +
Sbjct: 293 TMNSSNLLCTPCLGPCPKVCHLLEGE 318
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 35.6 bits (82), Expect = 0.002
Identities = 30/107 (28%), Positives = 36/107 (33%), Gaps = 16/107 (14%)
Query: 17 NCSQECQCRNGAECHPATGEC-SCQPGFTGSLCEERCPPGTHGP-------------SCI 62
C+ C+ TGEC C G C+ RC G G +C
Sbjct: 57 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCD-RCKEGFFGNPLAPNPADKCKACACN 115
Query: 63 NRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCE 109
Q + CNP GQC C P G C C PG + CE
Sbjct: 116 PYGTVQQQSSCNPVTGQCQCLPHVSGRDCGT-CDPGYYNLQSGQGCE 161
Score = 32.5 bits (74), Expect = 0.017
Identities = 36/145 (24%), Positives = 45/145 (31%), Gaps = 35/145 (24%)
Query: 22 CQCRNGAECHPATGE-----CSCQPGFTGSLCEERCPPGTHGPS--------------CI 62
C C G+ C C G G CE C G G C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE-LCDDGYFGDPLGSNGPVRLCRPCQCN 59
Query: 63 NRCRCQNGAICNPANGQCL-CAPGWMGSVCNVPCTPGMWGQGCT-------VPCECF--- 111
+ CN G+CL C G C+ C G +G C C
Sbjct: 60 DNIDPNAVGNCNRLTGECLKCIYNTAGFYCDR-CKEGFFGNPLAPNPADKCKACACNPYG 118
Query: 112 ---NGASCHHVTGECQCEPGFKGQK 133
+SC+ VTG+CQC P G+
Sbjct: 119 TVQQQSSCNPVTGQCQCLPHVSGRD 143
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 35.6 bits (81), Expect = 0.003
Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 7/131 (5%)
Query: 3 THCEEVCGPGRFGQNCSQECQC------RNGAECHPATGECSCQPGFTGSLCEERCPPGT 56
C+++C + C++ +C + + T +C+ + +C CPP T
Sbjct: 179 NRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNT 238
Query: 57 HGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWG-QGCTVPCECFNGAS 115
+ A A C C G ++ C G
Sbjct: 239 YRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPC 298
Query: 116 CHHVTGECQCE 126
E + +
Sbjct: 299 PKVCEEEKKTK 309
Score = 25.6 bits (55), Expect = 6.4
Identities = 12/116 (10%), Positives = 25/116 (21%), Gaps = 6/116 (5%)
Query: 16 QNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRC------QN 69
+ +T + C++ CP +C C +
Sbjct: 149 GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGS 208
Query: 70 GAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQC 125
+ + C + VC C P + + A+
Sbjct: 209 CSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSE 264
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 33.8 bits (78), Expect = 0.005
Identities = 23/118 (19%), Positives = 32/118 (27%), Gaps = 19/118 (16%)
Query: 7 EVCGPGRFGQNCSQEC------QCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHG 58
E N ++ C+N +C G C+C GF G CE
Sbjct: 27 EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL 86
Query: 59 PSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASC 116
+ C + C CA G+ + C P T P C
Sbjct: 87 DNGDCDQFCHEE----QNSVVCSCARGYTLADNGKACIP-------TGPYPCGKQTLE 133
Score = 30.7 bits (70), Expect = 0.068
Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 19/115 (16%)
Query: 24 CRNGAECHPATGE--CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--Q 79
C + E + P CQN C G
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSP-------CQNQGKCKDGLGEYT 64
Query: 80 CLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG--ECQCEPGFKGQ 132
C C G+ G C + + C++ CH C C G+
Sbjct: 65 CTCLEGFEGKNCELFTR-----KLCSLDN-GDCDQFCHEEQNSVVCSCARGYTLA 113
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 34.0 bits (77), Expect = 0.008
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 9/72 (12%)
Query: 19 SQEC-----QCRNGAECHPATG--ECSCQPGFTGS--LCEERCPPGTHGPSCINRCRCQN 69
Q C QC AEC C C +TG+ C P R +
Sbjct: 5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGS 64
Query: 70 GAICNPANGQCL 81
+ L
Sbjct: 65 SQVPVVFENTDL 76
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 33.6 bits (77), Expect = 0.010
Identities = 24/128 (18%), Positives = 33/128 (25%), Gaps = 19/128 (14%)
Query: 7 EVCGPGRFGQNCSQEC------QCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHG 58
E N ++ C+N +C G C+C GF G CE
Sbjct: 27 EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSL 86
Query: 59 PSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHH 118
+ C + C CA G+ + C P T P C
Sbjct: 87 DNGDCDQFCHEE----QNSVVCSCARGYTLADNGKACIP-------TGPYPCGKQTLERR 135
Query: 119 VTGECQCE 126
Q
Sbjct: 136 KRSVAQAT 143
Score = 27.8 bits (62), Expect = 0.81
Identities = 17/94 (18%), Positives = 24/94 (25%), Gaps = 18/94 (19%)
Query: 9 CGPGRFGQNCSQECQ-------CRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGP 59
C G G+NC + CH CSC G+T + + C P
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP----- 121
Query: 60 SCINRCRCQNGAICNPANG--QCLCAPGWMGSVC 91
C + Q + G
Sbjct: 122 --TGPYPCGKQTLERRKRSVAQATSSSGEAPDSI 153
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 33.1 bits (76), Expect = 0.014
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 24 CRNGAECHPATGE--CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCL 81
C + C + C+C PG+ GS CE + CQ+ + + C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELA----KNECHPERTDGCQHFCLPGQESYTCS 68
Query: 82 CAPGWMGSVCNVPCTPGMWGQGCTVPC 108
CA G+ + C P +
Sbjct: 69 CAQGYRLGEDHKQCVPHDQCACGVLTS 95
Score = 25.4 bits (56), Expect = 5.9
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 9 CGPGRFGQNCSQE----CQCRNG---AECHPATGE--CSCQPGFTGSLCEERCPPGTHGP 59
C PG G NC R C P CSC G+ ++C P
Sbjct: 30 CSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
Query: 60 SCINRCRCQN 69
+ +
Sbjct: 90 CGVLTSEKRA 99
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.5 bits (72), Expect = 0.037
Identities = 20/99 (20%), Positives = 26/99 (26%), Gaps = 9/99 (9%)
Query: 7 EVCGPGRFGQNCSQEC------QCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHG 58
+ + + C+NG C C C P F G CE
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC 91
Query: 59 PSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTP 97
N Q + C C G+ V CTP
Sbjct: 92 V-NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
Score = 25.8 bits (57), Expect = 3.8
Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 22/104 (21%)
Query: 37 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVCNVP 94
+ + P CQNG C C C P + G C
Sbjct: 32 KDAERTKLFWISYSDGDQCASSP-------CQNGGSCKDQLQSYICFCLPAFEGRNCETH 84
Query: 95 CTPGMWGQGCTVPCECFNGASCHHVTGE------CQCEPGFKGQ 132
+ C NG + + C+C G+
Sbjct: 85 KDD-------QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLL 121
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 31.8 bits (72), Expect = 0.038
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 51 RCPPGTHGPSCINRCRCQNGAI-CNPANGQCLCAPGWMGSVCNVPCT 96
CP C N C N C + C W+ C C
Sbjct: 158 DCPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCF 204
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 31.9 bits (71), Expect = 0.046
Identities = 16/101 (15%), Positives = 24/101 (23%), Gaps = 2/101 (1%)
Query: 9 CGPGRFGQNCSQECQCRNGAECHPA--TGECSCQPGFTGSLCEERCPPGTHGPSCINRCR 66
N C + H G C C + G C+E
Sbjct: 522 KQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRA 581
Query: 67 CQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVP 107
N + G+ G + S + + G TV
Sbjct: 582 PSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVD 622
Score = 30.4 bits (67), Expect = 0.19
Identities = 21/119 (17%), Positives = 29/119 (24%), Gaps = 11/119 (9%)
Query: 24 CRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCA 83
C C+ E S G + C P S + R N L
Sbjct: 442 CSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPL 501
Query: 84 PGWMGSV---------CNVPCTPGMWGQGCTVPCECFNGASCHH--VTGECQCEPGFKG 131
P + S + C + S H V G C C+ + G
Sbjct: 502 PSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGG 560
Score = 25.4 bits (54), Expect = 7.3
Identities = 15/92 (16%), Positives = 21/92 (22%), Gaps = 11/92 (11%)
Query: 34 TGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNV 93
Q + G C++ C C G C+C W G C+
Sbjct: 517 PAPFDKQQTWAIDNVYI-------GDGCLDMCS--GHGRCV--QGSCVCDEQWGGLYCDE 565
Query: 94 PCTPGMWGQGCTVPCECFNGASCHHVTGECQC 125
P T N G+
Sbjct: 566 PETSLPTQLKDNFNRAPSNQNWLTVSGGKLST 597
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 31.1 bits (70), Expect = 0.062
Identities = 24/121 (19%), Positives = 36/121 (29%), Gaps = 6/121 (4%)
Query: 17 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNP- 75
+ + G C C G+ G CE + + + + N IC+
Sbjct: 89 RDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGL 148
Query: 76 ---ANGQCLCAPGWMGSVCNV--PCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFK 130
GQCLC + C C G+C+C PGF+
Sbjct: 149 GDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFE 208
Query: 131 G 131
G
Sbjct: 209 G 209
Score = 26.5 bits (58), Expect = 2.5
Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 6/96 (6%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECHP----ATGECSCQPGFTGSLC--EERCPPG 55
G +CE + + N C G+C C + C
Sbjct: 117 GKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECD 176
Query: 56 THGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 91
T N C G+C C PG+ GS C
Sbjct: 177 TINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC 212
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.1 bits (70), Expect = 0.075
Identities = 11/48 (22%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 17 NCSQECQCRNGAECHP--ATGECSC-QPGFTGSLCEERCPPGTHGPSC 61
QE C N C C C F+G LC +
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG 233
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.5 bits (69), Expect = 0.12
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 8 VCGPGRFGQNCSQECQCRNGAEC 30
+ G GR G E + R G
Sbjct: 44 ILGMGRIGTGAYDELRARYGKIS 66
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.5 bits (68), Expect = 0.13
Identities = 20/118 (16%), Positives = 28/118 (23%), Gaps = 12/118 (10%)
Query: 9 CGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQ 68
C G C+Q+CQ +C+C G+ + C C C
Sbjct: 6 CNVNNGG--CAQKCQMI------RGAVQCTCHTGYRLTEDGRTCQ---DVNECAEEGYCS 54
Query: 69 NGAICNPANGQCLCAPGWMGSVCNVPCTP-GMWGQGCTVPCECFNGASCHHVTGECQC 125
G + QC C G+ C G H
Sbjct: 55 QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLL 112
Score = 27.4 bits (60), Expect = 1.6
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 62 INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG 121
+N C QC C G+ + C C C G +
Sbjct: 8 VNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVN---ECAEEGYCSQGCTNSEGAF 64
Query: 122 ECQCEPGFK 130
+C CE G++
Sbjct: 65 QCWCEAGYE 73
>3s2k_C Dickkopf-related protein 1; WNT CO-receptor, beta-propeller, EGF
domain, WNT signaling, inhibitor, glycosylation,
signaling protein; HET: NAG FUC; 2.80A {Homo sapiens}
PDB: 3s8v_X
Length = 97
Score = 29.4 bits (65), Expect = 0.17
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 11 PGRFGQNCSQECQCRNGAECHPATGECSCQP-GFTGSLCEERCPPGTHGPSCINRCRCQN 69
G+ G C + C +G C C+P G +C + G+HG RC C
Sbjct: 8 KGQEGSVCLRSSDCASGLCCARHFWSKICKPVLKEGQVCTKHRRKGSHGLEIFQRCYCGE 67
Query: 70 GAICNPANGQCLCAPGWMGSVC 91
G C + C
Sbjct: 68 GLSCRIQKDHHQASNSSRLHTC 89
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.9 bits (66), Expect = 0.18
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 2/76 (2%)
Query: 17 NCSQECQC-RNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNP 75
C ++G G T + C+NG CN
Sbjct: 104 QVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE 163
Query: 76 ANGQCLCAPGWMGSVC 91
C C G+ G C
Sbjct: 164 RR-ICECPDGFHGPHC 178
Score = 27.2 bits (59), Expect = 1.5
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 2 GTHCEEVCGPGRFGQNCSQ---ECQCRNGAECHPATGECSCQPGFTGSLCE 49
G F + C Q CRNG C+ C C GF G CE
Sbjct: 130 GNTILXTPQNAIFFKTCQQAECPGGCRNGGFCN-ERRICECPDGFHGPHCE 179
Score = 26.0 bits (56), Expect = 4.1
Identities = 15/116 (12%), Positives = 20/116 (17%), Gaps = 26/116 (22%)
Query: 17 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPA 76
+ C G E G
Sbjct: 87 TVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFE----------VDVIVMNSEGNTILXT 136
Query: 77 NGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQ 132
+ + C P C NG C+ C+C GF G
Sbjct: 137 PQNAIFFKTCQQAEC---------------PGGCRNGGFCNE-RRICECPDGFHGP 176
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 29.9 bits (67), Expect = 0.19
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 51 RCPPGTHGPSCINRCRCQNGAI-CNPANGQCLCAPGWMGSVCNVPC 95
CP C N C N C+ Q C W+ S C C
Sbjct: 169 DCPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIKSNCPASC 214
Score = 26.4 bits (58), Expect = 2.9
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 9 CGPGRFGQNCSQECQCRNG-AECHPATGECSCQPGFTGSLCEERC 52
C C+ C N C + SCQ + S C C
Sbjct: 170 CPSACDNGLCTNPCTIYNKLTNCDSLLKQSSCQDDWIKSNCPASC 214
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 29.9 bits (66), Expect = 0.21
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGA-ECHPATGECSCQPGFTGSLCE 49
+ C+ C + S C NG EC G C C PG+ GS CE
Sbjct: 429 VTFDCD--CACQAQAEPNSHRCNNGNGTFEC----GVCRCGPGWLGSQCE 472
Score = 25.3 bits (54), Expect = 9.0
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 49 EERCPPGTHGPSCINRCRCQNGA---ICNPANGQCLCAPGWMGSVC 91
C + N RC NG C G C C PGW+GS C
Sbjct: 430 TFDCDCACQAQAEPNSHRCNNGNGTFEC----GVCRCGPGWLGSQC 471
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 29.8 bits (67), Expect = 0.24
Identities = 13/61 (21%), Positives = 16/61 (26%), Gaps = 19/61 (31%)
Query: 46 SLCEERCPPGTH-----GPSCINRC-RCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGM 99
S C + C P G C C C+ C + C PG
Sbjct: 483 SQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLVDEF-TC------------MDCGPGQ 529
Query: 100 W 100
W
Sbjct: 530 W 530
Score = 25.5 bits (56), Expect = 7.3
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 13/47 (27%)
Query: 89 SVCNVPCTPGMW-----GQGCTVPCECFNGASC---HHVTGECQCEP 127
S C+ PC P G C C+ C ++ E C
Sbjct: 483 SQCSDPCAPNEMKNMQPGDVC-----CWICIPCEPYEYLVDEFTCMD 524
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin,
seven-transmembrane, light-gated cation membrane
protein; HET: RET OLA; 2.30A {Chlamydomonas
reinhardtii}
Length = 333
Score = 29.9 bits (66), Expect = 0.25
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 69 NGAI-CNPANGQCLCAPGWMGS 89
NG++ C P NGQC C W+ S
Sbjct: 38 NGSVICIPNNGQCFCL-AWLKS 58
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 29.4 bits (65), Expect = 0.34
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 39 CQPGFTGSLCEERCPPGTHGPSCINRCR---CQNGAICNPANGQCLC---APGWMGSVCN 92
G E G C NG +C+ + Q +C G+ G C+
Sbjct: 167 VDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCS 226
Query: 93 VPCTPGMW 100
+
Sbjct: 227 QGKEEYIA 234
Score = 27.9 bits (61), Expect = 1.2
Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 3/56 (5%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQ---PGFTGSLCEERCPP 54
G + C NG C + C GF G C +
Sbjct: 176 DEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEE 231
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 29.1 bits (64), Expect = 0.37
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCE 49
+ T C+ C + +C G CSC PG G LCE
Sbjct: 451 LHTLCD--CNCSDTQPQAPHCSDGQGHLQC----GVCSCAPGRLGRLCE 493
Score = 26.8 bits (58), Expect = 2.5
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 52 CPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVCN 92
C P + Q C G C CAPG +G +C
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQC----GVCSCAPGRLGRLCE 493
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 28.9 bits (64), Expect = 0.47
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 15/81 (18%)
Query: 40 QPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVCNVPCTP 97
P + ++R P T+ N C + + +P QC C G C
Sbjct: 251 SPMDIHAFSQQRQPNATNPCGIDN-GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309
Query: 98 GMWGQGCTVPCECFNGASCHH 118
G HH
Sbjct: 310 G---------NSH---HHHHH 318
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 28.4 bits (62), Expect = 0.70
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 6/131 (4%)
Query: 1 MGTHCEEVCGPGRFGQNCSQECQCRNGAECH-PATGEC-SCQPGFTGSLCEERCPPGTHG 58
C + C G++ S C + A C P +C C+ + C++ CPP
Sbjct: 187 TKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLY 246
Query: 59 PSCINRC-RCQNGAICNPANGQCLCAPGWM---GSVCNVPCTPGMWGQGCTVPCECFNGA 114
+ G A C ++ C C + +C
Sbjct: 247 NPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCE 306
Query: 115 SCHHVTGECQC 125
Sbjct: 307 GPCRKVCNGIG 317
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 26.4 bits (58), Expect = 0.76
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 51 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 91
+CP C+N C I + C CA G+MG C
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 27.8 bits (61), Expect = 1.1
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 84 PGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEP 127
PG +V +P G+W C + G S + +C+
Sbjct: 418 PGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNKCQT 461
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 25.5 bits (57), Expect = 1.3
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCE 49
C NG C EC C GF G CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 27.0 bits (60), Expect = 1.3
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 9/85 (10%)
Query: 17 NCSQECQCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICN 74
C C G C C+ G+ G C+ C
Sbjct: 15 EHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL-----DNGGCTHYCL 69
Query: 75 PANG--QCLCAPGWMGSVCNVPCTP 97
G +C CAPG+ + C P
Sbjct: 70 EEVGWRRCSCAPGYKLGDDLLQCHP 94
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 27.2 bits (61), Expect = 1.6
Identities = 5/17 (29%), Positives = 7/17 (41%), Gaps = 1/17 (5%)
Query: 65 CRCQN-GAICNPANGQC 80
C+ G NP N +
Sbjct: 48 HPCKELGCSPNPQNYEY 64
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 25.3 bits (55), Expect = 2.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 51 RCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMGSVC 91
+CP C+N C I + C CA G+MG C
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 25.5 bits (55), Expect = 2.2
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 24 CRNGAECH-------PATGECSCQPGFTGSLCEERCPP 54
C NG EC P+ C CQPGFTG+ C E P
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM 51
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 26.6 bits (59), Expect = 2.5
Identities = 19/99 (19%), Positives = 24/99 (24%), Gaps = 14/99 (14%)
Query: 37 CSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG--QCLCAPGWMGSVCNVP 94
C C P F + C C NG C G S +
Sbjct: 26 CDCPPDFELNPTRVGCVD-------TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Query: 95 CTPG-MWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQ 132
C+ G WG C + C GF+
Sbjct: 79 CSLGKAWGTPCEMCPAVNTSEYKIL----CPGGEGFRPN 113
Score = 25.4 bits (56), Expect = 6.4
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 5/78 (6%)
Query: 21 ECQCRNGAECHPATG--ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG 78
C G CS + G S C + G + C +
Sbjct: 46 SGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC---SLGKAWGTPCEMCPAVNTSEYKI 102
Query: 79 QCLCAPGWMGSVCNVPCT 96
C G+ + V
Sbjct: 103 LCPGGEGFRPNPITVILE 120
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 26.3 bits (58), Expect = 2.6
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 24 CRNGAECHPATGE--CSCQPGFTGSLCEE 50
C EC C C PGF+G CE+
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 25.5 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 21 ECQCRNGAECHPATGE----CSCQPGFTGSLCE 49
E +C NG C A C C GF G CE
Sbjct: 53 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
Score = 24.8 bits (54), Expect = 6.1
Identities = 16/62 (25%), Positives = 18/62 (29%), Gaps = 12/62 (19%)
Query: 36 ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANG----QCLCAPGWMGSVC 91
C C G SC RC NG C A C C G+ G C
Sbjct: 33 YCWCNSGRAQCHS-------VPVKSCS-EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
Query: 92 NV 93
+
Sbjct: 85 EI 86
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 26.2 bits (58), Expect = 2.8
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 36 ECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCLCAPGWMG 88
+ +C CE T C + G+ C +C G+
Sbjct: 46 KGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSR 98
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 26.3 bits (57), Expect = 3.5
Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 21/124 (16%)
Query: 17 NCSQECQCRNGAECHPATGECSCQPGFTG------SLCEERCPPGTHGPSCIN-----RC 65
CS C EC C GF +E P T C+N +C
Sbjct: 9 GCSHVCNDL------KIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 62
Query: 66 RCQNGAICNPANGQCL----CAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG 121
+C+ G +P C A + + V + ++ N +
Sbjct: 63 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 122
Query: 122 ECQC 125
+
Sbjct: 123 SNRI 126
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 26.3 bits (57), Expect = 3.8
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 57 HGPSCINRCRCQNGAICNPANGQCLCAPGWM----GSVCNVP 94
P C + + P +C C G+ C VP
Sbjct: 578 SNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCIVP 619
Score = 25.6 bits (55), Expect = 6.7
Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 50 ERCPPGTHGPSCINRCRCQNGAICNPANGQC--LCAPGWMGSVCNVPCTPGMW----GQG 103
++ P + + NG C LC G C C G +
Sbjct: 559 DQLPDLMGLKATNVHRVIGSNPCAEE-NGGCSHLCLYRPQGLRCA--CPIGFELISDMKT 615
Query: 104 CTVP 107
C VP
Sbjct: 616 CIVP 619
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 26.2 bits (57), Expect = 4.1
Identities = 6/68 (8%), Positives = 16/68 (23%), Gaps = 1/68 (1%)
Query: 54 PGTHGPSCINRCRCQNGAICNPA-NGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFN 112
G + R G + + + + + + + F+
Sbjct: 150 TGKIKKADAVRVITFTGCMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFD 209
Query: 113 GASCHHVT 120
G V+
Sbjct: 210 GEGYALVS 217
Score = 25.4 bits (55), Expect = 6.8
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 17 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGP 59
C+ + + +E PA QP T + P HGP
Sbjct: 558 RCTYQKPREDESEAVPAEVIVQPQPVPTPAFPFPA-PTMVHGP 599
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 25.9 bits (56), Expect = 4.6
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 7/66 (10%)
Query: 22 CQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQNGAICNPANGQCL 81
+ EC+ G LC P G C C N N C
Sbjct: 253 DILVFHSSRQSGWNECASSNGHCSHLC-LAVPVGGF------VCGCPAHYSLNADNRTCS 305
Query: 82 CAPGWM 87
++
Sbjct: 306 APTTFL 311
>2jtk_A Dickkopf-related protein 2; domain, developmental protein,
glycoprotein, secreted, WNT signaling pathway,
signaling protein; NMR {Mus musculus}
Length = 90
Score = 25.1 bits (54), Expect = 4.8
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 10 GPGRFGQNCSQECQCRNGAECHPATGECSCQP-GFTGSLCEERCPPGTHGPSCINRCRCQ 68
G G C + C +G C C+P G +C ++ G+HG RC C
Sbjct: 6 IKGHEGDPCLRSSDCIDGFCCARHFWTKICKPVLHQGEVCTKQRKKGSHGLEIFQRCDCA 65
Query: 69 NGAICNPANG 78
G C
Sbjct: 66 KGLSCKVWKD 75
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 25.4 bits (55), Expect = 5.4
Identities = 19/131 (14%), Positives = 28/131 (21%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSC 61
G C+ +C G C + G+ C+
Sbjct: 32 GKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCGS 91
Query: 62 INRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTG 121
+ +C G C + G C G C G
Sbjct: 92 QAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWG 151
Query: 122 ECQCEPGFKGQ 132
C PG+ G
Sbjct: 152 SCGIGPGYCGA 162
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 25.7 bits (56), Expect = 6.4
Identities = 16/132 (12%), Positives = 27/132 (20%), Gaps = 5/132 (3%)
Query: 2 GTHCEEVCGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHG--- 58
+ Q C E C++ EC F+ + + C G G
Sbjct: 83 QPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGL 142
Query: 59 --PSCINRCRCQNGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASC 116
+ N + N C + N + +
Sbjct: 143 ICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGV 202
Query: 117 HHVTGECQCEPG 128
CQ
Sbjct: 203 TDEKDNCQLLFN 214
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 25.1 bits (55), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 17 NCSQECQCRNGAECHPATGECSCQPGFTGSLCE 49
+CS++ +C + CSC PGF G CE
Sbjct: 126 SCSKQGECLETIGNY----TCSCYPGFYGPECE 154
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 25.1 bits (55), Expect = 7.9
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 19 SQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPG-THGPSCINRC 65
+C+C ++ A GE +C L C +G C NR
Sbjct: 63 RMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRR 110
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 25.3 bits (55), Expect = 8.1
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 37 CSCQPGFTGSLCEER 51
C C PG+ CE +
Sbjct: 399 CRCYPGWQAPWCERK 413
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 25.4 bits (55), Expect = 8.2
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 15 GQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTH---GPSCINRCRCQNGA 71
G C Q ++G EC + EC TG CP G C++
Sbjct: 254 GDCCEQCKFSKSGTECRASMSECDPAEHCTG--QSSECPADVFHKNGQPCLDNYGYCYNG 311
Query: 72 ICNPANGQC 80
C QC
Sbjct: 312 NCPIMYHQC 320
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 25.2 bits (55), Expect = 8.9
Identities = 18/119 (15%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 9 CGPGRFGQNCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCRCQ 68
G Q+C + + T + + E C C N RCQ
Sbjct: 274 ALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEAC-----QKLCTNAVRCQ 328
Query: 69 NGAICNPANGQCLCAPGWMGSVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEP 127
PA C G + +P G + +P
Sbjct: 329 FFT-YTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKP 386
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.546
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,175,163
Number of extensions: 134395
Number of successful extensions: 2198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 608
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)