RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11501
(133 letters)
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 25.0 bits (55), Expect = 0.81
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCE 49
C NG C EC C GF G CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 22.7 bits (49), Expect = 4.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 67 CQNGAICNPANG--QCLCAPGWMGSVCNV 93
C NG C +C C G+ G C +
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 51
Score = 25.2 bits (55), Expect = 0.82
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 17 NCSQECQCRNGAECHPATGECSCQPGFTGSLCEERCPPGTHGPSCINRCR 66
C+ + + C+P TG+C C P +G C C PG + C
Sbjct: 2 ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC-GTCDPGYYNLQSGQGCE 50
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 24.7 bits (54), Expect = 0.94
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCE 49
C+N +C G C+C GF G CE
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
Score = 22.0 bits (47), Expect = 7.6
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 67 CQNGAICNPANG--QCLCAPGWMGSVCNV 93
CQN C G C C G+ G C +
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCEL 36
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 24.6 bits (54), Expect = 0.96
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCE 49
C+N A C G +C C PG+ G CE
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCE 36
Score = 22.3 bits (48), Expect = 5.9
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 67 CQNGAICNPANG--QCLCAPGWMGSVC 91
CQN A C G QC+C PG+ G C
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHC 35
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 23.9 bits (52), Expect = 1.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCE 49
C + +C G EC C G+TG CE
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCE 40
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 23.5 bits (51), Expect = 2.1
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCE 49
C+NG C C C P F G CE
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNCE 37
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 24.2 bits (52), Expect = 2.1
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 24 CRNGAECHPATGE-------CSCQPGFTGSLCEERCPPGTHGPS 60
C NG EC C CQPGFTG+ C E P
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQE 57
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 23.6 bits (51), Expect = 2.4
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCEE 50
C EC C C PGF+G CE+
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGLKCEQ 37
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 23.1 bits (50), Expect = 3.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCE 49
C + C +C C GFTG LC+
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLCQ 35
>d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 140
Score = 24.0 bits (51), Expect = 5.4
Identities = 5/44 (11%), Positives = 8/44 (18%)
Query: 89 SVCNVPCTPGMWGQGCTVPCECFNGASCHHVTGECQCEPGFKGQ 132
S+ V G+ NG +
Sbjct: 30 SLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRERFASRILEA 73
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 22.4 bits (48), Expect = 5.5
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 24 CRNGAECHPATG--ECSCQPGFTGSLCEE 50
C EC G CSC PGF G CE
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECEY 37
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 22.9 bits (49), Expect = 5.6
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 24 CRNGAECHPATGE----CSCQPGFTGSLCEER 51
C NG C C+C G++G C+ R
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 22.1 bits (47), Expect = 9.6
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 24 CRNGAECHPATGE---CSCQPGFTGSLCEER 51
C G + C C G+ G+ CE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCERV 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.546
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,293
Number of extensions: 33186
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 225
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)