BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11503
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP8|A Chain A, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|B Chain B, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|C Chain C, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|D Chain D, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
Length = 135
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHR 124
+V+SL YEAY MA + IC+++R+ WP + ++A++HRLG HR
Sbjct: 49 KVISLEYEAYLPMAENEVRKICSDIRQKWP-VKHIAVFHRLGLVPVSEASIIIAVSSAHR 107
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEY 150
+L AV +AI+ LK PIWKKE Y
Sbjct: 108 AASLEAVSYAIDTLKAKVPIWKKEIY 133
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEY 46
HR +L AV +AI+ LK PIWKKE Y
Sbjct: 106 HRAASLEAVSYAIDTLKAKVPIWKKEIY 133
>pdb|2QIE|A Chain A, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|H Chain H, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|K Chain K, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
pdb|2QIE|E Chain E, Staphylococcus Aureus Molybdopterin Synthase In Complex
With Precursor Z
Length = 148
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 69 LHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHRQTAL 128
L YEAY MA K I + + E WP + +I HR+G HR+ A
Sbjct: 47 LEYEAYIPMAEKKLAQIGDEINEKWPGTIT-SIVHRIGPLQISDIAVLIAVSSPHRKDAY 105
Query: 129 SAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSE 165
A E+AI ++KE+ PIWKKE + G+ K N E
Sbjct: 106 RANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYE 142
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSE 61
HR+ A A E+AI ++KE+ PIWKKE + G+ K N E
Sbjct: 100 HRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYE 142
>pdb|2Q5W|E Chain E, The X-Ray Crystal Structure Of Molybdopterin Synthase From
Staphylococcus Aureus
Length = 149
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 69 LHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHRQTAL 128
L YEAY MA K I + + E WP + +I HR+G HR+ A
Sbjct: 48 LEYEAYIPMAEKKLAQIGDEINEKWPGTIT-SIVHRIGPLQISDIAVLIAVSSPHRKDAY 106
Query: 129 SAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSE 165
A E+AI ++KE+ PIWKKE + G+ K N E
Sbjct: 107 RANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYE 143
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSE 61
HR+ A A E+AI ++KE+ PIWKKE + G+ K N E
Sbjct: 101 HRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYE 143
>pdb|2OMD|A Chain A, Crystal Structure Of Molybdopterin Converting Factor
Subunit 2 (Aq_2181) From Aquifex Aeolicus Vf5
pdb|2OMD|B Chain B, Crystal Structure Of Molybdopterin Converting Factor
Subunit 2 (Aq_2181) From Aquifex Aeolicus Vf5
Length = 154
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 68 SLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHRQTA 127
+L YEAY MA+K + I E + + V I+HRLG HR+
Sbjct: 53 ALEYEAYPEMAIKEMEKIRQETIEKF-GVKEVFIHHRLGLVKIGEPSFLVLAVGGHREET 111
Query: 128 LSAVEHAINKLKEMAPIWKKEEYAPG 153
A +A+++ K+ PIWKKE + G
Sbjct: 112 FKACRYAVDETKKRVPIWKKEIFKEG 137
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEYAPG 49
HR+ A +A+++ K+ PIWKKE + G
Sbjct: 107 HREETFKACRYAVDETKKRVPIWKKEIFKEG 137
>pdb|2WP4|A Chain A, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
pdb|2WP4|B Chain B, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
Length = 147
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 66 VVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHRQ 125
V L YEAY M ++ I E + V VA+ HR G HR
Sbjct: 53 VTRLFYEAYPPMVIRTLMSIIGRC-EDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRA 111
Query: 126 TALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQW 160
A A I LK+ PIWKKE + T A+W
Sbjct: 112 EAFDAARMCIELLKQEVPIWKKEF----SSTGAEW 142
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQW 56
HR A A I LK+ PIWKKE + T A+W
Sbjct: 109 HRAEAFDAARMCIELLKQEVPIWKKEF----SSTGAEW 142
>pdb|1FM0|E Chain E, Molybdopterin Synthase (MoadMOAE)
pdb|1FMA|E Chain E, Molybdopterin Synthase (MoadMOAE)
pdb|1NVI|E Chain E, Orthorhombic Crystal Form Of Molybdopterin Synthase
Length = 150
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 66 VVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHRQ 125
V +L E Y M K +I + R WP + V + HR+G HR
Sbjct: 47 VNALTLEHYPGMTEKALAEIVDEARNRWP-LGRVTVIHRIGELWPGDEIVFVGVTSAHRS 105
Query: 126 TALSAVEHAINKLKEMAPIWKKEEYAPG 153
+A A + ++ LK AP WK+E G
Sbjct: 106 SAFEAGQFIMDYLKTRAPFWKREATPEG 133
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEYAPG 49
HR +A A + ++ LK AP WK+E G
Sbjct: 103 HRSSAFEAGQFIMDYLKTRAPFWKREATPEG 133
>pdb|3BII|E Chain E, Crystal Structure Of Activated Mpt Synthase
Length = 149
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 66 VVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHRQ 125
V +L E Y M K +I + R WP + V + HR+G HR
Sbjct: 46 VNALTLEHYPGMTEKALAEIVDEARNRWP-LGRVTVIHRIGELWPGDEIVFVGVTSAHRS 104
Query: 126 TALSAVEHAINKLKEMAPIWKKEEYAPG 153
+A A + ++ LK AP WK+E G
Sbjct: 105 SAFEAGQFIMDYLKTRAPFWKREATPEG 132
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEYAPG 49
HR +A A + ++ LK AP WK+E G
Sbjct: 102 HRSSAFEAGQFIMDYLKTRAPFWKREATPEG 132
>pdb|1NVJ|A Chain A, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|B Chain B, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|C Chain C, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|D Chain D, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|E Chain E, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
pdb|1NVJ|F Chain F, Deletion Mutant (Delta 141) Of Molybdopterin Synthase
Length = 140
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 66 VVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNXXXXXXXXXXXXXXXHRQ 125
V +L E Y M K +I + R WP + V + HR+G HR
Sbjct: 47 VNALTLEHYPGMTEKALAEIVDEARNRWP-LGRVTVIHRIGELWPGDEIVFVGVTSAHRS 105
Query: 126 TALSAVEHAINKLKEMAPIWKKEEYAPG 153
+A A + ++ LK AP WK+E G
Sbjct: 106 SAFEAGQFIMDYLKTRAPFWKREATPEG 133
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 19 HRQTALSAVEHAINKLKEMAPIWKKEEYAPG 49
HR +A A + ++ LK AP WK+E G
Sbjct: 103 HRSSAFEAGQFIMDYLKTRAPFWKREATPEG 133
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 30 AINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMW 64
++++ E+API++ EE+ H + W +SE +
Sbjct: 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 236
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 134 AINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMW 168
++++ E+API++ EE+ H + W +SE +
Sbjct: 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 236
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 30 AINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMW 64
++++ E+API++ EE+ H + W +SE +
Sbjct: 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 236
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 134 AINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMW 168
++++ E+API++ EE+ H + W +SE +
Sbjct: 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 236
>pdb|3KEZ|A Chain A, Crystal Structure Of Putative Sugar Binding Protein
(Yp_001299726.1) From Bacteroides Vulgatus Atcc 8482 At
1.90 A Resolution
pdb|3KEZ|B Chain B, Crystal Structure Of Putative Sugar Binding Protein
(Yp_001299726.1) From Bacteroides Vulgatus Atcc 8482 At
1.90 A Resolution
Length = 461
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 23 ALSAVEHAINKL-KEMAPIWKKEEYAPGTHTDAQWKENSECMWRVVSL 69
AL+ E+AI KE +W EEY DA E ++ +V+L
Sbjct: 215 ALTXAENAIKGAEKEGYALWTNEEYPTAWGNDASASNPGEILFEIVNL 262
>pdb|3RPF|A Chain A, Protein-Protein Complex Of Subunit 1 And 2 Of
Molybdopterin-Converting Factor From Helicobacter Pylori
26695
pdb|3RPF|B Chain B, Protein-Protein Complex Of Subunit 1 And 2 Of
Molybdopterin-Converting Factor From Helicobacter Pylori
26695
Length = 148
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 103 HRLGNXXXXXXXXXXXXXXXHRQTALSAVEHAINKLKEMAPIWK 146
H LG+ +R+ AL E+ I K APIWK
Sbjct: 80 HSLGDVLIGQSSFLCVSXGKNRKNALELYENFIEDFKHNAPIWK 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,577,728
Number of Sequences: 62578
Number of extensions: 146223
Number of successful extensions: 273
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 24
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)