Query psy11503
Match_columns 172
No_of_seqs 243 out of 1780
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:04:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10678 moaE molybdopterin gu 100.0 6.6E-41 1.4E-45 263.0 13.1 113 49-166 30-142 (150)
2 PLN02390 molybdopterin synthas 100.0 1.1E-40 2.4E-45 250.2 12.8 105 49-154 6-110 (111)
3 COG0314 MoaE Molybdopterin con 100.0 2.2E-40 4.7E-45 259.7 14.2 128 28-167 16-143 (149)
4 cd00756 MoaE MoaE family. Memb 100.0 1.4E-39 3.1E-44 248.4 14.4 108 49-161 17-124 (124)
5 KOG3307|consensus 100.0 1.4E-36 3E-41 230.3 7.4 113 52-169 35-147 (150)
6 PRK14493 putative bifunctional 100.0 1.7E-34 3.7E-39 245.8 14.9 110 50-164 162-273 (274)
7 PF02391 MoaE: MoaE protein; 100.0 2E-31 4.3E-36 201.4 12.3 92 50-142 26-117 (117)
8 PLN02390 molybdopterin synthas 99.8 1E-18 2.2E-23 131.3 5.5 50 1-50 61-110 (111)
9 PRK10678 moaE molybdopterin gu 99.8 1E-18 2.2E-23 137.4 5.7 56 1-60 85-140 (150)
10 COG0314 MoaE Molybdopterin con 99.7 3E-18 6.4E-23 134.7 5.7 57 1-61 85-141 (149)
11 cd00756 MoaE MoaE family. Memb 99.7 3.4E-18 7.4E-23 130.6 5.4 53 1-57 72-124 (124)
12 KOG3307|consensus 99.6 2.3E-16 5.1E-21 120.2 4.5 60 1-64 87-146 (150)
13 PRK11538 ribosome-associated p 83.6 11 0.00023 28.0 8.0 63 82-148 7-70 (105)
14 TIGR00090 iojap_ybeB iojap-lik 77.3 23 0.00051 25.6 7.9 70 83-161 3-73 (99)
15 PRK14447 acylphosphatase; Prov 60.5 38 0.00082 24.3 5.9 46 54-105 33-78 (95)
16 TIGR02867 spore_II_P stage II 56.5 96 0.0021 25.4 8.3 76 76-151 63-149 (196)
17 PRK14450 acylphosphatase; Prov 49.8 57 0.0012 23.1 5.4 40 54-99 31-70 (91)
18 COG2840 Uncharacterized protei 49.1 23 0.00051 28.9 3.6 36 75-113 106-142 (184)
19 PF04456 DUF503: Protein of un 45.6 1.1E+02 0.0024 21.9 8.1 61 79-144 21-82 (90)
20 PF07454 SpoIIP: Stage II spor 44.0 1.2E+02 0.0026 26.1 7.3 77 76-152 140-228 (268)
21 PRK05988 formate dehydrogenase 43.3 57 0.0012 25.6 4.9 81 5-90 72-155 (156)
22 COG1586 SpeD S-adenosylmethion 41.4 1.6E+02 0.0034 23.0 6.9 61 79-143 33-115 (136)
23 PRK07571 bidirectional hydroge 38.4 53 0.0012 26.3 4.1 81 5-90 85-168 (169)
24 PF13193 AMP-binding_C: AMP-bi 35.5 1.3E+02 0.0028 19.6 6.3 52 87-148 3-54 (73)
25 PF02217 T_Ag_DNA_bind: Origin 34.5 1.8E+02 0.004 21.3 6.0 52 67-129 23-74 (94)
26 PF02410 Oligomerisation: Olig 32.2 1.9E+02 0.0041 20.7 7.3 71 82-161 2-74 (100)
27 KOG2848|consensus 32.0 68 0.0015 27.9 3.9 45 118-171 139-184 (276)
28 PRK14430 acylphosphatase; Prov 31.8 1.2E+02 0.0026 21.6 4.7 33 54-92 33-65 (92)
29 PRK12373 NADH dehydrogenase su 29.7 84 0.0018 28.7 4.3 69 24-93 103-173 (400)
30 smart00470 ParB ParB-like nucl 28.8 1.6E+02 0.0035 20.0 4.9 55 79-148 20-74 (89)
31 PRK14428 acylphosphatase; Prov 28.8 1.4E+02 0.0031 21.6 4.6 39 54-99 37-75 (97)
32 COG1905 NuoE NADH:ubiquinone o 28.3 94 0.002 24.8 3.9 84 5-92 74-159 (160)
33 COG1254 AcyP Acylphosphatases 27.7 1.5E+02 0.0033 21.3 4.6 35 54-94 33-67 (92)
34 PF09035 Tn916-Xis: Excisionas 27.4 18 0.00039 24.8 -0.3 12 139-150 3-14 (67)
35 PRK07539 NADH dehydrogenase su 27.1 1.5E+02 0.0032 23.0 4.8 81 5-89 71-153 (154)
36 PRK14422 acylphosphatase; Prov 26.3 1.7E+02 0.0037 20.8 4.7 35 54-94 35-69 (93)
37 PF00708 Acylphosphatase: Acyl 25.9 1.8E+02 0.0039 20.1 4.7 39 54-99 33-71 (91)
38 PF06421 LepA_C: GTP-binding p 25.8 37 0.0008 25.5 1.1 22 122-143 13-34 (108)
39 PF13046 DUF3906: Protein of u 25.7 1.3E+02 0.0027 20.6 3.6 37 110-146 10-46 (64)
40 COG2232 Predicted ATP-dependen 25.3 1.1E+02 0.0024 27.7 4.2 35 108-142 342-376 (389)
41 PF05691 Raffinose_syn: Raffin 25.1 71 0.0015 31.5 3.2 32 80-111 288-323 (747)
42 PF02785 Biotin_carb_C: Biotin 24.9 96 0.0021 22.9 3.2 26 114-139 51-76 (107)
43 PF08541 ACP_syn_III_C: 3-Oxoa 24.5 58 0.0013 22.2 1.9 19 104-122 62-80 (90)
44 cd08869 START_RhoGAP C-termina 24.4 3.6E+02 0.0079 21.4 8.2 91 25-121 5-96 (197)
45 smart00193 PTN Pleiotrophin / 23.9 30 0.00066 24.4 0.3 41 27-67 25-67 (80)
46 PF13046 DUF3906: Protein of u 23.5 1.6E+02 0.0035 20.1 3.8 38 5-42 9-46 (64)
47 smart00878 Biotin_carb_C Bioti 23.1 91 0.002 22.9 2.8 24 116-139 53-76 (107)
48 PLN02982 galactinol-raffinose 23.1 89 0.0019 31.2 3.4 32 80-111 390-425 (865)
49 PRK14444 acylphosphatase; Prov 22.8 2.2E+02 0.0047 20.2 4.7 34 54-93 33-66 (92)
50 TIGR00134 gatE_arch glutamyl-t 22.1 4.3E+02 0.0094 25.6 7.8 70 65-141 298-392 (620)
51 PRK14445 acylphosphatase; Prov 21.8 2.5E+02 0.0055 19.7 4.8 33 54-92 33-65 (91)
52 PRK00885 phosphoribosylamine-- 21.2 1.2E+02 0.0026 26.8 3.7 35 110-144 374-408 (420)
53 PF06421 LepA_C: GTP-binding p 20.7 1.7E+02 0.0038 21.9 3.9 65 62-131 2-67 (108)
54 PRK14449 acylphosphatase; Prov 20.2 2.9E+02 0.0063 19.4 4.9 35 54-94 32-66 (90)
No 1
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=100.00 E-value=6.6e-41 Score=262.98 Aligned_cols=113 Identities=28% Similarity=0.488 Sum_probs=107.7
Q ss_pred CccccccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHH
Q psy11503 49 GTHTDAQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTAL 128 (172)
Q Consensus 49 G~~~~~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af 128 (172)
+..+|.|+||+.++|++|++|+||+|++||++.|++|++++.++|| +.++.|+||+|.|+|||++|+|+|+|+||++||
T Consensus 30 Aiv~F~G~VR~~~~g~~V~~L~yeay~~ma~k~l~~I~~ea~~~~~-~~~v~i~HR~G~l~~Ge~~v~Vav~s~HR~~Af 108 (150)
T PRK10678 30 AVVTFTGKVRNHNLGDSVKALTLEHYPGMTEKALAEIVDEARSRWP-LGRVTVIHRVGELWPGDEIVFVGVTSAHRSSAF 108 (150)
T ss_pred eEEEEEEEECCCCCCCceeEEEEEecCcHHHHHHHHHHHHHHHhCC-CCcEEEEEeEecccCCCEEEEEEEECCCHHHHH
Confidence 4556899999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCcceeeeecCCCccccccccccccc
Q psy11503 129 SAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSEC 166 (172)
Q Consensus 129 ~A~~~~id~lK~~vpiWKkE~~~dg~~~~~~W~~~~~~ 166 (172)
+||+++||+||+++||||||++.||+ .|+++++.
T Consensus 109 ~A~~~~id~lK~~vPIWKkE~~~dG~----~Wv~~~~~ 142 (150)
T PRK10678 109 EAGQFIMDYLKTRAPFWKREATPEGD----RWVEARDS 142 (150)
T ss_pred HHHHHHHHHHhhcCCeEEeEEcCCCC----EEecCCcc
Confidence 99999999999999999999999996 89987654
No 2
>PLN02390 molybdopterin synthase catalytic subunit
Probab=100.00 E-value=1.1e-40 Score=250.15 Aligned_cols=105 Identities=42% Similarity=0.673 Sum_probs=101.2
Q ss_pred CccccccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHH
Q psy11503 49 GTHTDAQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTAL 128 (172)
Q Consensus 49 G~~~~~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af 128 (172)
+..+|.|.||+..+|++|++|+||+|+|||++.|++|+++++++|| +.++.|+||+|.|+|||++++|+|+|+||++||
T Consensus 6 Aiv~F~G~VR~~~~g~~V~~L~yeay~~ma~~~l~~I~~e~~~~~~-~~~v~i~HR~G~l~vge~~v~v~v~s~HR~~Af 84 (111)
T PLN02390 6 AIATFSGTTRDTFEGKTVLELRYEAYVPMALRELRKICDEARSRWS-LHKIAVAHRLGPVPVGETSVFVAVSSVHRADAL 84 (111)
T ss_pred EEEEEEEEECCCCCCCcEeeEEEEEcHHHHHHHHHHHHHHHHHhCC-CceEEEEEeeecccCCCEEEEEEEECCCHHHHH
Confidence 3456889999988999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCcceeeeecCCCc
Q psy11503 129 SAVEHAINKLKEMAPIWKKEEYAPGT 154 (172)
Q Consensus 129 ~A~~~~id~lK~~vpiWKkE~~~dg~ 154 (172)
+||+++||+||+++||||||+|+||+
T Consensus 85 ~A~~~~id~lK~~vPIWKkE~~~dG~ 110 (111)
T PLN02390 85 DACKFLIDELKASVPIWKKEVYDDGE 110 (111)
T ss_pred HHHHHHHHHHhhcCCEEEeeecCCCC
Confidence 99999999999999999999999996
No 3
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-40 Score=259.74 Aligned_cols=128 Identities=37% Similarity=0.565 Sum_probs=114.9
Q ss_pred HHHHHHhhhcCCcccccccCCCccccccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeec
Q psy11503 28 EHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGN 107 (172)
Q Consensus 28 ~~lId~lK~~~PIwKke~~~~G~~~~~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~ 107 (172)
..+++.+.+.. +++ +.++|.|+||+..+|.+|++|+||+|++||++.|.+|+++++++|| +.++.++||+|.
T Consensus 16 ~~~i~~~~~~~-----~~G--AivtF~G~VR~~~~G~~v~~L~yEaY~~ma~k~l~~I~~e~~~k~~-~~~v~i~HriG~ 87 (149)
T COG0314 16 EELIEALSEPS-----EAG--AIVTFVGIVREENDGRRVEALEYEAYPEMAEKELEEIAAEAKEKWG-LLRVAIIHRIGE 87 (149)
T ss_pred HHHHHHHhCcc-----cCc--eEEEEEEEEecCCCCceeeeEEEecCHHHHHHHHHHHHHHHHHhCC-ceeEEEEEeecc
Confidence 34555555544 233 4556889999999999999999999999999999999999999997 899999999999
Q ss_pred cCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhCcceeeeecCCCcccccccccccccc
Q psy11503 108 VPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSECM 167 (172)
Q Consensus 108 l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~vpiWKkE~~~dg~~~~~~W~~~~~~~ 167 (172)
|.|||++|+|+|+|+||++||+||+|+||+||+++||||+|++.||+ .|+.+.+.+
T Consensus 88 l~~Ge~~v~v~v~s~HR~~Af~a~~~~id~lK~~aPiWKkE~~~dg~----~Wv~~~~~~ 143 (149)
T COG0314 88 LKIGEAIVLVGVASAHRKEAFEACEYIIDRLKHRAPIWKKEHTEDGE----RWVGDREHD 143 (149)
T ss_pred ccCCCcEEEEEEecccHHHHHHHHHHHHHHHHhhCCceEEEecCCCC----eEEeccccc
Confidence 99999999999999999999999999999999999999999999998 699877654
No 4
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=100.00 E-value=1.4e-39 Score=248.37 Aligned_cols=108 Identities=42% Similarity=0.670 Sum_probs=102.9
Q ss_pred CccccccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHH
Q psy11503 49 GTHTDAQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTAL 128 (172)
Q Consensus 49 G~~~~~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af 128 (172)
+..+|.|.||+...|++|++|+||+|++||++.|++|+++++++|+ +.++.++||+|.|+|||++++|+|+|+||++||
T Consensus 17 Aiv~F~G~VR~~~~~~~v~~L~ye~y~~ma~~~l~~I~~e~~~k~~-~~~v~v~HR~G~l~vGe~~v~i~v~a~hR~~af 95 (124)
T cd00756 17 AVVTFVGTVRDHDEGKGVEALEYEAYPPMAEKELEEIAEEARERWG-LLRVAIIHRVGRLPPGEAIVLVAVSSPHRKEAF 95 (124)
T ss_pred EEEEEEEEECCCCCCCcEeEEEEEECchHHHHHHHHHHHHHHHhCC-CceEEEEEEEcccCCCCEEEEEEEecCCHHHHH
Confidence 3445789999988899999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCcceeeeecCCCcccccccc
Q psy11503 129 SAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWK 161 (172)
Q Consensus 129 ~A~~~~id~lK~~vpiWKkE~~~dg~~~~~~W~ 161 (172)
+||+++||+||+++||||+|+|.||+ .|+
T Consensus 96 ~A~~~~id~lK~~~PiWKkE~~~~~~----~Wv 124 (124)
T cd00756 96 EACEFLIDRLKHRAPIWKKEIFEGGE----EWV 124 (124)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCC----EEC
Confidence 99999999999999999999999886 785
No 5
>KOG3307|consensus
Probab=100.00 E-value=1.4e-36 Score=230.34 Aligned_cols=113 Identities=47% Similarity=0.751 Sum_probs=109.4
Q ss_pred ccccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHHHH
Q psy11503 52 TDAQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALSAV 131 (172)
Q Consensus 52 ~~~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~A~ 131 (172)
+|.|.+||.+.|++|..|+||+|.|||.+.|+.||.+++++|| +..+.+.||+|.+++||.+|+|+|+|+||..+++||
T Consensus 35 tF~GtTRdnfeGk~V~~L~Yeay~pMA~~~lr~IC~~iR~~wp-vkkIAvfHRLG~VpvgEsSviIavSS~HRa~~l~A~ 113 (150)
T KOG3307|consen 35 TFNGTTRDNFEGKDVSNLSYEAYDPMAYKKLRGICAEIRAEWP-VKKIAVFHRLGKVPVGESSVIIAVSSPHRATALQAT 113 (150)
T ss_pred eeccccccccCCceeeeeehhhhcHHHHHHHHHHHHHHHhhCc-hhhhhhhhhccCcccCcceEEEEecChhhHHHHHHH
Confidence 4679999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCcceeeeecCCCcccccccccccccccc
Q psy11503 132 EHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMWR 169 (172)
Q Consensus 132 ~~~id~lK~~vpiWKkE~~~dg~~~~~~W~~~~~~~~~ 169 (172)
+++||.||..+||||||.|+.++ .|++|.+++|.
T Consensus 114 ~~~ID~LKa~vPIwKkE~Ye~~~----vWK~N~E~~~~ 147 (150)
T KOG3307|consen 114 EKCIDLLKAHVPIWKKEEYEVDG----VWKSNIEDSKQ 147 (150)
T ss_pred HHHHHHHHhcCCcccceeeecCc----cccccHHHHHh
Confidence 99999999999999999999886 99999999875
No 6
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=100.00 E-value=1.7e-34 Score=245.76 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=104.0
Q ss_pred ccccccccc--cccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHH
Q psy11503 50 THTDAQWKE--NSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTA 127 (172)
Q Consensus 50 ~~~~~~wv~--nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~a 127 (172)
..+|.|+|| +..+|+.|+.|+|++|++||+++|++|+++++++|+ +.++.++||+|.|+|||+||+|+|+|+||++|
T Consensus 162 i~~F~G~VR~r~~~~g~~v~~L~ye~y~~~A~~~l~~I~~e~~~~~~-~~~v~v~Hr~G~l~vge~~v~v~v~a~hR~~a 240 (274)
T PRK14493 162 IATFTGRVRAKEDADDEPTEYLEFEKYDGVADERMAAIREELKQRDG-VFEVLLHHRTGVIEAGEDIVFVVVLAGHRQEA 240 (274)
T ss_pred EEEEEeEEEccccCCCCcEEEEEEEeCCHHHHHHHHHHHHHHHHhCC-CceEEEEEeeccccCCCeEEEEEEecCCHHHH
Confidence 445889999 777899999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCcceeeeecCCCccccccccccc
Q psy11503 128 LSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS 164 (172)
Q Consensus 128 f~A~~~~id~lK~~vpiWKkE~~~dg~~~~~~W~~~~ 164 (172)
|+||+|+||+||+++||||||+|.||. .|++..
T Consensus 241 f~a~~~~id~lK~~~piwK~e~~~~g~----~Wv~~~ 273 (274)
T PRK14493 241 FRAVSDGIDRLKDEVPIFKKEVTVDEE----FWVHDR 273 (274)
T ss_pred HHHHHHHHHHHhhcCCeEEEEEcCCCC----EeecCC
Confidence 999999999999999999999999996 899753
No 7
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=99.97 E-value=2e-31 Score=201.40 Aligned_cols=92 Identities=37% Similarity=0.522 Sum_probs=85.4
Q ss_pred ccccccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHH
Q psy11503 50 THTDAQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALS 129 (172)
Q Consensus 50 ~~~~~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~ 129 (172)
..+|.|+||+..+|++|++|+|++|++||++.|++|+++++++|| +..+.|+||+|+|+|||++|+|+|+|+||++||+
T Consensus 26 i~~F~G~VR~~~~~~~v~~L~ye~y~~ma~~~l~~I~~e~~~~~~-~~~v~i~HR~G~l~vGe~~v~V~vsa~hR~eaf~ 104 (117)
T PF02391_consen 26 IVIFNGIVRNHSDGKKVEALEYEAYEEMAEKELEEIAEEARERFG-IVDVAIVHRVGRLKVGEPIVLVAVSAPHRKEAFE 104 (117)
T ss_dssp EEEEEEE--CCCTCCCEEEEEEEE-HHHHHHHHHHHHHHHHHHST-TCEEEEEEEEEEEETTSEEEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCCccEEEEEEEEccHHHHHHHHHHHHHHHHhCC-CeEEEEEEeeCCCCCCCeEEEEEEecCCHHHHHH
Confidence 445789999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhC
Q psy11503 130 AVEHAINKLKEMA 142 (172)
Q Consensus 130 A~~~~id~lK~~v 142 (172)
||+++||+||++|
T Consensus 105 A~~~~id~iK~~V 117 (117)
T PF02391_consen 105 ACEYIIDRIKKEV 117 (117)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999986
No 8
>PLN02390 molybdopterin synthase catalytic subunit
Probab=99.75 E-value=1e-18 Score=131.26 Aligned_cols=50 Identities=54% Similarity=0.838 Sum_probs=48.5
Q ss_pred CCcccCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCc
Q psy11503 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGT 50 (172)
Q Consensus 1 ~G~~~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~ 50 (172)
+|.|++||++|+|+|+|+||++||+||+++||+||+++||||||.+.+|.
T Consensus 61 ~G~l~vge~~v~v~v~s~HR~~Af~A~~~~id~lK~~vPIWKkE~~~dG~ 110 (111)
T PLN02390 61 LGPVPVGETSVFVAVSSVHRADALDACKFLIDELKASVPIWKKEVYDDGE 110 (111)
T ss_pred eecccCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhcCCEEEeeecCCCC
Confidence 69999999999999999999999999999999999999999999999885
No 9
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=99.75 E-value=1e-18 Score=137.43 Aligned_cols=56 Identities=30% Similarity=0.602 Sum_probs=53.1
Q ss_pred CCcccCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCccccccccccc
Q psy11503 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS 60 (172)
Q Consensus 1 ~G~~~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv~ns 60 (172)
+|.|++||++|+|+|+|+||++||+||+++||+||+++||||||.+.+|. .|+.+.
T Consensus 85 ~G~l~~Ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~vPIWKkE~~~dG~----~Wv~~~ 140 (150)
T PRK10678 85 VGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGD----RWVEAR 140 (150)
T ss_pred EecccCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhcCCeEEeEEcCCCC----EEecCC
Confidence 69999999999999999999999999999999999999999999999994 799864
No 10
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=99.73 E-value=3e-18 Score=134.68 Aligned_cols=57 Identities=40% Similarity=0.763 Sum_probs=53.9
Q ss_pred CCcccCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCcccccccccccc
Q psy11503 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSE 61 (172)
Q Consensus 1 ~G~~~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv~nse 61 (172)
+|.|.+||++|+|+|+|+||++||+||+++||++|+++||||+|...+|. .|+.+..
T Consensus 85 iG~l~~Ge~~v~v~v~s~HR~~Af~a~~~~id~lK~~aPiWKkE~~~dg~----~Wv~~~~ 141 (149)
T COG0314 85 IGELKIGEAIVLVGVASAHRKEAFEACEYIIDRLKHRAPIWKKEHTEDGE----RWVGDRE 141 (149)
T ss_pred eccccCCCcEEEEEEecccHHHHHHHHHHHHHHHHhhCCceEEEecCCCC----eEEeccc
Confidence 69999999999999999999999999999999999999999999999997 5998643
No 11
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=99.73 E-value=3.4e-18 Score=130.58 Aligned_cols=53 Identities=49% Similarity=0.896 Sum_probs=50.0
Q ss_pred CCcccCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCcccccccc
Q psy11503 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWK 57 (172)
Q Consensus 1 ~G~~~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv 57 (172)
+|.|++||++|+|+|+|+||++||+||+++||+||+++||||+|.+.+|. .|+
T Consensus 72 ~G~l~vGe~~v~i~v~a~hR~~af~A~~~~id~lK~~~PiWKkE~~~~~~----~Wv 124 (124)
T cd00756 72 VGRLPPGEAIVLVAVSSPHRKEAFEACEFLIDRLKHRAPIWKKEIFEGGE----EWV 124 (124)
T ss_pred EcccCCCCEEEEEEEecCCHHHHHHHHHHHHHHHHhhCCEEEEEEeCCCC----EEC
Confidence 59999999999999999999999999999999999999999999998775 575
No 12
>KOG3307|consensus
Probab=99.63 E-value=2.3e-16 Score=120.15 Aligned_cols=60 Identities=58% Similarity=0.866 Sum_probs=55.6
Q ss_pred CCcccCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCccccccccccccccc
Q psy11503 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMW 64 (172)
Q Consensus 1 ~G~~~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv~nse~G~ 64 (172)
+|.+++||++|+|+|||+||..+++||+++||.||+.+||||||.|..+. -|+.|.++.+
T Consensus 87 LG~VpvgEsSviIavSS~HRa~~l~A~~~~ID~LKa~vPIwKkE~Ye~~~----vWK~N~E~~~ 146 (150)
T KOG3307|consen 87 LGKVPVGESSVIIAVSSPHRATALQATEKCIDLLKAHVPIWKKEEYEVDG----VWKSNIEDSK 146 (150)
T ss_pred ccCcccCcceEEEEecChhhHHHHHHHHHHHHHHHhcCCcccceeeecCc----cccccHHHHH
Confidence 69999999999999999999999999999999999999999999997765 6999977654
No 13
>PRK11538 ribosome-associated protein; Provisional
Probab=83.60 E-value=11 Score=27.96 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhh-Ccceeee
Q psy11503 82 FKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEM-APIWKKE 148 (172)
Q Consensus 82 l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~-vpiWKkE 148 (172)
++.|++-+..+- ..+|.++---|.-...| .+|.++|......-..+..+.+.+|.. .+....|
T Consensus 7 ~~~i~~~l~dkK--a~DI~vlDv~~~~~~~D--y~VIatg~S~rh~~aia~~v~~~~k~~~~~~~~~e 70 (105)
T PRK11538 7 QDFVIDKIDDLK--GQDIIALDVQGKSSITD--CMIICTGTSSRHVMSIADHVVQESRAAGLLPLGVE 70 (105)
T ss_pred HHHHHHHHHHcC--CCCeEEEECCCCCcccC--EEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 444555555553 57898888888877777 667777777777888889999999863 3333444
No 14
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=77.32 E-value=23 Score=25.63 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=48.9
Q ss_pred HHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhh-CcceeeeecCCCcccccccc
Q psy11503 83 KDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEM-APIWKKEEYAPGTHTDAQWK 161 (172)
Q Consensus 83 ~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~-vpiWKkE~~~dg~~~~~~W~ 161 (172)
+.|++-+.++- ..+|.++--.|.....| .+|.++|......-..++.+.+.+|.. .+....|-.. ++.|+
T Consensus 3 ~~i~~~l~~kk--a~dI~vldv~~~~~~~d--y~VI~Tg~S~rh~~aia~~v~~~~k~~~~~~~~~EG~~-----~~~Wi 73 (99)
T TIGR00090 3 ELIVEALDDKK--AEDIVVLDVRGKSSIAD--YFVIASGTSSRHVKAIADNVEEELKEAGLKPLGVEGLE-----EGDWV 73 (99)
T ss_pred HHHHHHHHHcC--CCCEEEEECCCCCcccC--EEEEEEeCCHHHHHHHHHHHHHHHHHcCCCcccccCCC-----CCCEE
Confidence 44555555553 47888888888888887 678888888888999999999999863 3333445222 24686
No 15
>PRK14447 acylphosphatase; Provisional
Probab=60.50 E-value=38 Score=24.32 Aligned_cols=46 Identities=15% Similarity=-0.027 Sum_probs=30.9
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEee
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRL 105 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~ 105 (172)
.|||+|..||..|+ +..+.. ...|++.++.+++-.| ...|.-+...
T Consensus 33 ~G~V~N~~dG~~Ve-i~~qG~----~~~l~~f~~~l~~gp~-~a~V~~v~~~ 78 (95)
T PRK14447 33 RGWVRNRSDGRTVE-AVLEGP----RDAVLKVIEWARVGPP-GARVEDVEVK 78 (95)
T ss_pred EEEEEECCCCCEEE-EEEEeC----HHHHHHHHHHHhhCCC-CeEEEEEEEE
Confidence 49999999886676 446765 6677777777775544 5555555443
No 16
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=56.48 E-value=96 Score=25.42 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccC-------CCCeE----EEEEeeCcchHHHHHHHHHHHHHHhhhCcc
Q psy11503 76 SMALKVFKDICNNLRETWPDIVNVAIYHRLGNVP-------VSEAS----VVIAISSPHRQTALSAVEHAINKLKEMAPI 144 (172)
Q Consensus 76 ~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~-------vGe~~----v~Vavas~hR~~af~A~~~~id~lK~~vpi 144 (172)
..|....++-++++.+++|++.-+.=+||-|.-. -|+.. ++++...++.++-++-+..+.+.+.+.-|-
T Consensus 63 ~~sY~~Sr~tv~~~l~~~p~i~~viDiHRDs~~~~~~t~~inG~~~Aki~fVvG~~np~~~~N~~fA~~l~~~~~~~yPg 142 (196)
T TIGR02867 63 EQSYDRSRETVKKALKENKDLKYIIDLHRDSVRRKKTTVNINGESVAKVMFVIGKNNPHFEKNLQLANKLHAKLEKKYPG 142 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCCceEEEEeecCCCCCCcceEEECCEEEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 4567788888899999999888788889998532 35555 677779999999999999999999998876
Q ss_pred eeeeecC
Q psy11503 145 WKKEEYA 151 (172)
Q Consensus 145 WKkE~~~ 151 (172)
--+.++.
T Consensus 143 l~rgi~~ 149 (196)
T TIGR02867 143 LSRGIFY 149 (196)
T ss_pred cccceEE
Confidence 5666555
No 17
>PRK14450 acylphosphatase; Provisional
Probab=49.76 E-value=57 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=25.4
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEE
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNV 99 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v 99 (172)
.|||+|..+|..|+-+ .+-. .+.+++..+.+++-.| ...|
T Consensus 31 ~G~V~N~~dG~~Vei~-~~G~----~~~v~~f~~~l~~gp~-~a~V 70 (91)
T PRK14450 31 CGYAKNLANGNEVEVV-AEGD----KDSLLEFLDLLRSGPP-RAEV 70 (91)
T ss_pred EEEEEECCCCCEEEEE-EEeC----HHHHHHHHHHHhhCCC-CcEE
Confidence 4999999888667644 6665 4456666666654433 4334
No 18
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.14 E-value=23 Score=28.92 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCC-Ce
Q psy11503 75 KSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVS-EA 113 (172)
Q Consensus 75 ~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vG-e~ 113 (172)
-+-|.+.|.+.+.++.++ ++..|.|+|=.|. ..| +.
T Consensus 106 q~eAr~~L~~Fi~~a~~~--~~rcv~VihGkG~-s~g~~~ 142 (184)
T COG2840 106 QEEARQELGAFIARARAE--GLRCVLVIHGKGR-SKGSKP 142 (184)
T ss_pred HHHHHHHHHHHHHHHHHh--CCcEEEEEeCCCc-CCCCch
Confidence 345889999999999887 5999999999999 888 54
No 19
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=45.64 E-value=1.1e+02 Score=21.86 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhCCCccEEEEEEeeec-cCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhCcc
Q psy11503 79 LKVFKDICNNLRETWPDIVNVAIYHRLGN-VPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPI 144 (172)
Q Consensus 79 ~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~-l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~vpi 144 (172)
++.++.|.+.++++|+ +.-..+ |. =......+-+++.|..|..+-.-++.+++.|....++
T Consensus 21 R~vvksl~~klr~rfn-vSvaEv----~~~D~~q~a~lg~a~vs~~~~~~~~~l~~v~~~ie~~~~~ 82 (90)
T PF04456_consen 21 RQVVKSLIDKLRNRFN-VSVAEV----GHQDSWQRAVLGFAVVSNSRAHAEQILDKVERFIEENPDA 82 (90)
T ss_dssp HHHHHHHHHHHHHHSS--EEEEE----E-TT-SSEEEEEEEEEES-HHHHHHHHHHHHHHHHHS-SS
T ss_pred HHHHHHHHHHHHhhCC-eEEEEe----cCCCcccEEEEEEEEEECCHHHHHHHHHHHHHHHHhCCCE
Confidence 5678899999999997 643333 32 2344567778899999999999999999998665544
No 20
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=44.05 E-value=1.2e+02 Score=26.11 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCccEEEEEEeeecc------------CCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhCc
Q psy11503 76 SMALKVFKDICNNLRETWPDIVNVAIYHRLGNV------------PVSEASVVIAISSPHRQTALSAVEHAINKLKEMAP 143 (172)
Q Consensus 76 ~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l------------~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~vp 143 (172)
..|...-++.++++.+++|+|.-+.=+||-|.- +..-..++|+-..++.++-+.-+..+.+.+.+..|
T Consensus 140 ~~sY~~Sr~tv~~~l~~~p~i~~~iDiHRDs~~~~~~~t~~InG~~~Aki~fVvG~~np~~~~N~~fA~~l~~~~~~~yP 219 (268)
T PF07454_consen 140 NQSYKRSRETVKKALKENPDIKVVIDIHRDSVPDREKTTTTINGKNYAKIMFVVGRDNPNWEKNLAFAKQLHAKLEKKYP 219 (268)
T ss_pred HHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCccccceEEECCEEeeEEEEEEcCCCCCHHHHHHHHHHHHHHHHhHCC
Confidence 446777788889999999988878888999965 34455677888899999999999999999999988
Q ss_pred ceeeeecCC
Q psy11503 144 IWKKEEYAP 152 (172)
Q Consensus 144 iWKkE~~~d 152 (172)
=--+.++..
T Consensus 220 Gl~rgI~~k 228 (268)
T PF07454_consen 220 GLSRGIFVK 228 (268)
T ss_pred Cccceeeec
Confidence 555555443
No 21
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=43.29 E-value=57 Score=25.63 Aligned_cols=81 Identities=11% Similarity=-0.042 Sum_probs=57.5
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCccccccccc---cccccceeeEEEEeeChhHHHHH
Q psy11503 5 PVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKE---NSECMWRVVSLHYEAYKSMALKV 81 (172)
Q Consensus 5 ~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv~---nse~G~~V~~L~ye~y~~ma~~~ 81 (172)
++|.-.|.|..+.+= .....+.+++.+++...|-..|...||.++.. .++ .. +.-++--+.-+.|..|..+.
T Consensus 72 p~Gk~~I~VC~~~~C---~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~-~~~ClG~C-~~aP~~~in~~~~~~lt~~~ 146 (156)
T PRK05988 72 PPGRHVLKLCRAEAC---QAMGGDALAAHAKARLGIDFHQTTADGAVTLE-PVYCLGLC-ACSPAAMLDGEVHGRLDPQR 146 (156)
T ss_pred CCCCEEEEEeCCchh---hcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEE-eeeecCcc-CCCCeEEECCEEeCCCCHHH
Confidence 567777766555432 23456889999999998877778889877532 232 21 22467778888999999999
Q ss_pred HHHHHHHHH
Q psy11503 82 FKDICNNLR 90 (172)
Q Consensus 82 l~~I~~e~~ 90 (172)
+.+|+++.+
T Consensus 147 ~~~il~~~~ 155 (156)
T PRK05988 147 LDALLAEAR 155 (156)
T ss_pred HHHHHHHhh
Confidence 999998765
No 22
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=41.39 E-value=1.6e+02 Score=23.05 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhCCCccEEEEE-EeeeccCCCCeEEEEEeeCcc---------------------hHHHHHHHHHHHH
Q psy11503 79 LKVFKDICNNLRETWPDIVNVAIY-HRLGNVPVSEASVVIAISSPH---------------------RQTALSAVEHAIN 136 (172)
Q Consensus 79 ~~~l~~I~~e~~~~~~gi~~v~i~-Hr~G~l~vGe~~v~Vavas~h---------------------R~~af~A~~~~id 136 (172)
.+.|++|..++...- |..-+.+. |+.+ |+=.+++|.++=.| ..+...|++++++
T Consensus 33 ~e~l~~i~~eAa~~~-gati~~~~~~~f~---p~GvSgvvliaESHitiHTwPEyg~A~iDVyTCG~~~~p~~A~~yi~~ 108 (136)
T COG1586 33 AERLEEILLEAAKIA-GATILNIAFHKFS---PQGVSGVVLIAESHITIHTWPEYGYATIDVYTCGDHIDPLKAFNYLVE 108 (136)
T ss_pred HHHHHHHHHHHHHHh-CCEEEEEEeEEec---CCCeEEEEEEEeeeeeEecCCccCceEEEEEccCCCCCHHHHHHHHHH
Confidence 467889999988876 35444333 5555 77778888777555 4678999999999
Q ss_pred HHhhhCc
Q psy11503 137 KLKEMAP 143 (172)
Q Consensus 137 ~lK~~vp 143 (172)
.||..-.
T Consensus 109 ~L~p~~v 115 (136)
T COG1586 109 QLKPKRV 115 (136)
T ss_pred HhCCcEE
Confidence 9997644
No 23
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=38.43 E-value=53 Score=26.28 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=56.1
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCccccccccc---cccccceeeEEEEeeChhHHHHH
Q psy11503 5 PVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKE---NSECMWRVVSLHYEAYKSMALKV 81 (172)
Q Consensus 5 ~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv~---nse~G~~V~~L~ye~y~~ma~~~ 81 (172)
++|.-.|-|..+.+ =-....+.+++.+++...|-.-|...||.++. ..++ .. +.-++--+.-+.|..+..+.
T Consensus 85 P~Gk~~I~VC~g~a---C~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL-~~~~ClG~C-~~AP~~~Vn~~~~~~lt~e~ 159 (169)
T PRK07571 85 PSGEHTCVVCTGTA---CYVKGSAAILEDLENELGIKAGETTADGKLSL-LTARCLGAC-GIAPAVVFDGKVAGKQTPES 159 (169)
T ss_pred CCCCEEEEEcCChH---HHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEE-EEecccCcc-CCCCeEEECCEEeCCCCHHH
Confidence 34666554443332 12345688999999999987777888997753 2333 21 22477778888999999999
Q ss_pred HHHHHHHHH
Q psy11503 82 FKDICNNLR 90 (172)
Q Consensus 82 l~~I~~e~~ 90 (172)
+.+|+++.+
T Consensus 160 v~~il~~~~ 168 (169)
T PRK07571 160 VLEKVQGWL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998874
No 24
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=35.46 E-value=1.3e+02 Score=19.64 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=32.7
Q ss_pred HHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhCcceeee
Q psy11503 87 NNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKE 148 (172)
Q Consensus 87 ~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~vpiWKkE 148 (172)
+++..++|+|.++.++=.- .=.-|+.++..++. .. +.+.+.++..+|=|+.-
T Consensus 3 E~~l~~~~~V~~~~V~~~~-d~~~g~~l~a~vv~--------~~-~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 3 ESVLRQHPGVAEAAVVGVP-DEDWGERLVAFVVL--------DE-EEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp HHHHHTSTTEEEEEEEEEE-ETTTEEEEEEEEEE--------HH-HHHHHHHHHHS-GGGS-
T ss_pred HHHHhcCCCccEEEEEEEE-cccccccceeEEEe--------ee-cccccchhhhCCCccee
Confidence 5566788888877665332 44556666666666 22 77888888888766544
No 25
>PF02217 T_Ag_DNA_bind: Origin of replication binding protein; InterPro: IPR003133 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the central origin-binding domain (OBD). The overall fold of the ~130-residue T-ag OBD can be described as a central five-stranded antiparallel beta-sheet flanked by two alpha-helices on one side and one alpha-helix and one 3(10)-helix on the other. Both faces of the central beta-sheet are largely hydrophobic and are protected from solvent by the helices, thus forming two hydrophobic cores []. The T-ag OBD molecules are arranged as a spiral with a left-handed twist having six T-ag OBD's per turn. The spiral surrounds a central channel, the inner wall of which consists of alpha helices []. ; GO: 0003688 DNA replication origin binding, 0006260 DNA replication; PDB: 2IPR_B 2ITL_B 1Z1D_B 2FUF_A 2TBD_A 3QK2_A 2ITJ_A 2IF9_A 2NL8_A 2NTC_A ....
Probab=34.45 E-value=1.8e+02 Score=21.30 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=38.9
Q ss_pred eEEEEeeChhHHHHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHH
Q psy11503 67 VSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALS 129 (172)
Q Consensus 67 ~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~ 129 (172)
-.|-|+.. ++++.+-+.+.++|. ...... |..| ++-++++...++||-.|..
T Consensus 23 ~fliyTT~-----eK~~~Ly~kl~~kf~-~~f~~~-~~~~----~~~~l~~it~~khRVSAv~ 74 (94)
T PF02217_consen 23 CFLIYTTK-----EKAEQLYKKLLEKFK-PTFISR-HKWE----EGGALFFITPGKHRVSAVK 74 (94)
T ss_dssp EEEEEEEH-----HHHHHHHHHCHHHCT-ECEEEE-EEET----TEEEEEEEEEEEEEHHHHH
T ss_pred eEEEEEcH-----HHHHHHHHHHHHhcC-CcEEEE-EEec----CCcEEEEEcCCCcchHHHH
Confidence 56888875 567778888889995 666655 5554 5667999999999988753
No 26
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=32.18 E-value=1.9e+02 Score=20.65 Aligned_cols=71 Identities=10% Similarity=0.180 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhh--CcceeeeecCCCcccccc
Q psy11503 82 FKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEM--APIWKKEEYAPGTHTDAQ 159 (172)
Q Consensus 82 l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~--vpiWKkE~~~dg~~~~~~ 159 (172)
++.|++-+.++. ..++.++---+.-...|- +|.+++..-...-.++..+.+.++++ .+....|-..+ +.
T Consensus 2 ~~~i~~~l~~~k--~~dI~v~dv~~~~~~~dy--~II~T~~S~rh~~aia~~v~~~~~k~~~~~~~~~eG~~~-----~~ 72 (100)
T PF02410_consen 2 LEEIVEALEDKK--AEDIVVLDVREKSSWADY--FIIATGRSERHVRAIADEVEKALKKEYGERPLRIEGLDE-----SD 72 (100)
T ss_dssp HHHHHHHHHHTT---EEEEEEEGCTTBSS-SE--EEEEEESSHHHHHHHHHHHHHHH-HHTT----EEESTTT-----TS
T ss_pred HHHHHHHHHHcC--CCCeEEEECCCCCcccCE--EEEEEcCCHHHHHHHHHHHHHHHHHHcCCcccccCCCCC-----CC
Confidence 455666666664 478988887776666654 44445555566777788888888332 34446663333 36
Q ss_pred cc
Q psy11503 160 WK 161 (172)
Q Consensus 160 W~ 161 (172)
|+
T Consensus 73 W~ 74 (100)
T PF02410_consen 73 WV 74 (100)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 27
>KOG2848|consensus
Probab=31.97 E-value=68 Score=27.87 Aligned_cols=45 Identities=18% Similarity=0.464 Sum_probs=35.0
Q ss_pred EeeCcchHHHHHHHHHHHHHHhhh-CcceeeeecCCCcccccccccccccccccC
Q psy11503 118 AISSPHRQTALSAVEHAINKLKEM-APIWKKEEYAPGTHTDAQWKENSECMWRVK 171 (172)
Q Consensus 118 avas~hR~~af~A~~~~id~lK~~-vpiWKkE~~~dg~~~~~~W~~~~~~~~~~~ 171 (172)
.+=-..|++|.+.+..+.+++|++ .-+| +|..|+ . .++.++-|||
T Consensus 139 fIdR~r~~~Ai~~l~~~~~~mkk~~~kvW---vFPEGT----R--n~~g~llPFK 184 (276)
T KOG2848|consen 139 FIDRSRREKAIDTLDKCAERMKKENRKVW---VFPEGT----R--NKEGRLLPFK 184 (276)
T ss_pred EEecCCHHHHHHHHHHHHHHHHhCCeeEE---EccCCc----c--CCCCcccccc
Confidence 344568999999999999999998 8888 688998 2 4444565655
No 28
>PRK14430 acylphosphatase; Provisional
Probab=31.83 E-value=1.2e+02 Score=21.65 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=22.7
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhh
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRET 92 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~ 92 (172)
.|||+|..||+ |+ +..+-. ...++++++.+.+-
T Consensus 33 ~G~VrN~~dGs-Ve-i~~qG~----~~~i~~f~~~l~~g 65 (92)
T PRK14430 33 GGWVRNRADGT-VE-VMASGT----VRQLEALRAWMEAG 65 (92)
T ss_pred EEEEEECCCCc-EE-EEEEcC----HHHHHHHHHHHHhC
Confidence 49999988776 44 556665 56677777777443
No 29
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=29.72 E-value=84 Score=28.73 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhcCCcccccccCCCccccccccccc-c-ccceeeEEEEeeChhHHHHHHHHHHHHHHhhC
Q psy11503 24 LSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS-E-CMWRVVSLHYEAYKSMALKVFKDICNNLRETW 93 (172)
Q Consensus 24 f~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv~ns-e-~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~ 93 (172)
...++.+++.+++...|-.-|...||.|+. ..|+.- . +.-++-.+.-+.|..|....+.+|+++++.--
T Consensus 103 l~Ga~~ll~~le~~Lgik~GeTT~DG~FTL-e~veCLGaC~~APv~~Ind~~y~~LTpe~v~~IL~~l~ag~ 173 (400)
T PRK12373 103 LRGSEALMAVCKSKIHAHPHELNADGTLSW-EEVECLGACVNAPMVQIGKDYYEDLTPERLEEIIDAFAAGK 173 (400)
T ss_pred hCChHHHHHHHHHHhCCCCCCcCCCCeEEE-EeeeecCccCCCCeEEECCEEeCCCCHHHHHHHHHHHhCCC
Confidence 456789999999999987777888998753 233311 1 23477888889999999999999999998643
No 30
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=28.84 E-value=1.6e+02 Score=19.97 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhCCCccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhCcceeee
Q psy11503 79 LKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKE 148 (172)
Q Consensus 79 ~~~l~~I~~e~~~~~~gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~vpiWKkE 148 (172)
...+++|++.+++. |+..=.++.+.+ | -+..+.|-||-.|+..+. ..++|.+-.+
T Consensus 20 ~~~~~~l~~si~~~--G~~~Pi~v~~~~----g---~~~vidG~~R~~A~~~lg------~~~ip~~v~~ 74 (89)
T smart00470 20 EESLEELAESIKEN--GLLQPIIVRPND----G---RYEIIDGERRLRAAKLLG------LKEVPVIVRD 74 (89)
T ss_pred HHHHHHHHHHHHHh--CCccCeEEEecC----C---cEEEEeCHHHHHHHHHcC------CCceeEEEEc
Confidence 57788887777765 344444555544 4 488999999999877665 4577776554
No 31
>PRK14428 acylphosphatase; Provisional
Probab=28.76 E-value=1.4e+02 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=24.7
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEE
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNV 99 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v 99 (172)
.|||+|..+|. ..+..+-. ...|++.++.+++-.| ...|
T Consensus 37 ~G~V~N~~dGs--Vei~~qG~----~~~i~~fi~~l~~gP~-~a~V 75 (97)
T PRK14428 37 QGWVRNCRDGS--VELEAQGS----SDAVQALVEQLAIGPR-WSEV 75 (97)
T ss_pred EEEEEECCCCE--EEEEEEcC----HHHHHHHHHHHhhCCC-ccEE
Confidence 49999988765 33445554 5667777777775443 4444
No 32
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=28.25 E-value=94 Score=24.84 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCccccccc--cccccccceeeEEEEeeChhHHHHHH
Q psy11503 5 PVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQW--KENSECMWRVVSLHYEAYKSMALKVF 82 (172)
Q Consensus 5 ~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~~w--v~nse~G~~V~~L~ye~y~~ma~~~l 82 (172)
++|-..|-|..+.+ =.....+.+++.+++...|--.|...||.++..+. ..+. +.-++--+.=+.|..+....|
T Consensus 74 P~Gr~~i~VC~~t~---C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC-~~AP~vmind~~~~~lt~e~l 149 (160)
T COG1905 74 PVGRHHIRVCTGTA---CHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGAC-GQAPVVMINDDVYGRLTPEKL 149 (160)
T ss_pred cCCCeEEEEeCCcH---HhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeeccc-ccCCEEEECCchhccCCHHHH
Confidence 44544444443332 13456788999999999998888999998743211 1121 224777788888888999999
Q ss_pred HHHHHHHHhh
Q psy11503 83 KDICNNLRET 92 (172)
Q Consensus 83 ~~I~~e~~~~ 92 (172)
.+|.+...++
T Consensus 150 ~eil~~~~~~ 159 (160)
T COG1905 150 EEILEKLKAK 159 (160)
T ss_pred HHHHHHHhcC
Confidence 9999887654
No 33
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=27.72 E-value=1.5e+02 Score=21.32 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=20.9
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCC
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWP 94 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~ 94 (172)
.|||+|..|| +|+.+ .+-.++ .++++.+.+.+-.|
T Consensus 33 ~G~V~N~~DG-sVeiv-a~G~~~----~v~~~~~~l~~g~~ 67 (92)
T COG1254 33 TGWVKNLDDG-SVEIV-AEGPDE----AVEKFIEWLRKGPP 67 (92)
T ss_pred EEEEEECCCC-eEEEE-EEcCHH----HHHHHHHHHHhCCC
Confidence 3999999987 66665 555533 24444444444343
No 34
>PF09035 Tn916-Xis: Excisionase from transposon Tn916; InterPro: IPR015122 The phage-encoded excisionase protein Tn916-Xis adopts a winged-helix structure that consists of a three-stranded anti-parallel beta-sheet that packs against a helix-turn-helix (HTH) motif and a third C-terminal alpha-helix. It is encoded for by Tn916, which also codes for the integrase Tn916-Int. The protein interacts with DNA by the insertion of helix alpha-2 into the major groove and the contact of the hairpin that connects strands beta-2 and beta-3 with the adjacent phosphodiester backbone and/or minor groove. Tn916-Xis stimulates phage excision and inhibits viral integration by stabilising distorted DNA structures []. ; PDB: 1Y6U_A.
Probab=27.37 E-value=18 Score=24.82 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=5.2
Q ss_pred hhhCcceeeeec
Q psy11503 139 KEMAPIWKKEEY 150 (172)
Q Consensus 139 K~~vpiWKkE~~ 150 (172)
|.++|||.|-..
T Consensus 3 k~~vPiweK~~L 14 (67)
T PF09035_consen 3 KKDVPIWEKYTL 14 (67)
T ss_dssp -----TTTSSEE
T ss_pred ccccchhHhhcc
Confidence 678999998643
No 35
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=27.06 E-value=1.5e+02 Score=23.01 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=49.2
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCcccccccCCCccccc--cccccccccceeeEEEEeeChhHHHHHH
Q psy11503 5 PVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDA--QWKENSECMWRVVSLHYEAYKSMALKVF 82 (172)
Q Consensus 5 ~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwKke~~~~G~~~~~--~wv~nse~G~~V~~L~ye~y~~ma~~~l 82 (172)
++|...|.|..+++ =....+..+++.+++...+-..+...+|.++.. +-..... ..++-.+.-+.|..+..+.+
T Consensus 71 p~gk~~I~VC~g~~---C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~-~gPvv~V~~~~y~~vt~e~v 146 (154)
T PRK07539 71 PVGRHVIQVCTSTP---CWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACD-NAPVVMINDDTYEDLTPEKI 146 (154)
T ss_pred CCCCEEEEEcCCch---HHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccC-CCCEEEECCEEeCCCCHHHH
Confidence 56888887777663 122345677777777776644444556655321 1112211 23555555667888889999
Q ss_pred HHHHHHH
Q psy11503 83 KDICNNL 89 (172)
Q Consensus 83 ~~I~~e~ 89 (172)
.+|++++
T Consensus 147 ~~il~~~ 153 (154)
T PRK07539 147 DELLDEL 153 (154)
T ss_pred HHHHHhc
Confidence 9988765
No 36
>PRK14422 acylphosphatase; Provisional
Probab=26.32 E-value=1.7e+02 Score=20.82 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=23.9
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCC
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWP 94 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~ 94 (172)
.|||+|..+|. |+ +..+.. ...|++..+.+.+-.|
T Consensus 35 ~G~V~N~~dG~-Ve-i~~~G~----~~~i~~f~~~l~~gp~ 69 (93)
T PRK14422 35 TGYAANLADGR-VQ-VVAEGP----RAACEKLLQLLRGDDT 69 (93)
T ss_pred EEEEEECCCCC-EE-EEEEcC----HHHHHHHHHHHHhCCC
Confidence 49999988765 43 555665 5567777777776643
No 37
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=25.86 E-value=1.8e+02 Score=20.13 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=25.5
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCCCccEE
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNV 99 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~gi~~v 99 (172)
.|||+|..+| -..+..+.. ...|++..+.+.+..| ...|
T Consensus 33 ~G~V~N~~dg--~V~i~~~G~----~~~l~~f~~~l~~g~p-~a~V 71 (91)
T PF00708_consen 33 TGWVRNLPDG--SVEIEAEGE----EEQLEEFIKWLKKGPP-PARV 71 (91)
T ss_dssp EEEEEE-TTS--EEEEEEEEE----HHHHHHHHHHHHHSST-TSEE
T ss_pred ceEEEECCCC--EEEEEEEeC----HHHHHHHHHHHHhCCC-CcEE
Confidence 4999998877 334456664 5667788788877766 3444
No 38
>PF06421 LepA_C: GTP-binding protein LepA C-terminus; InterPro: IPR013842 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family is unknown. This entry represents the C-terminal region of these proteins [].; PDB: 2YWF_A 2YWE_A 2YWG_A 2YWH_A 3CB4_F 3DEG_C.
Probab=25.83 E-value=37 Score=25.52 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHHHhhhCc
Q psy11503 122 PHRQTALSAVEHAINKLKEMAP 143 (172)
Q Consensus 122 ~hR~~af~A~~~~id~lK~~vp 143 (172)
-||..|..-.+.++++||..+|
T Consensus 13 vhr~~a~~~gr~~v~kLK~~IP 34 (108)
T PF06421_consen 13 VHRSKAQRRGREIVEKLKELIP 34 (108)
T ss_dssp EECCCHHHHHHHHHHHHHHHS-
T ss_pred hhHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998
No 39
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=25.73 E-value=1.3e+02 Score=20.64 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=29.9
Q ss_pred CCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhCccee
Q psy11503 110 VSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWK 146 (172)
Q Consensus 110 vGe~~v~Vavas~hR~~af~A~~~~id~lK~~vpiWK 146 (172)
..+..+.|+|++..-..||++++--+++-=...|=|+
T Consensus 10 ~~~~~~~viv~Ae~ee~AF~~~e~eler~fl~~P~v~ 46 (64)
T PF13046_consen 10 LEEGPIPVIVAAENEEQAFRLVEVELERHFLPLPEVK 46 (64)
T ss_pred ecCCcEEEEEEecCHHHHHHHHHHHhhhhccCCCCce
Confidence 3677788899999999999999999888665666544
No 40
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=25.32 E-value=1.1e+02 Score=27.66 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=32.5
Q ss_pred cCCCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhC
Q psy11503 108 VPVSEASVVIAISSPHRQTALSAVEHAINKLKEMA 142 (172)
Q Consensus 108 l~vGe~~v~Vavas~hR~~af~A~~~~id~lK~~v 142 (172)
...||++.-|.+++..|..|-.-++.+.+++|...
T Consensus 342 iekgePl~sviA~~nt~~~a~~~~er~~ervk~~l 376 (389)
T COG2232 342 IEKGEPLCSVIASSNTRSGAESMAERLAERVKNFL 376 (389)
T ss_pred cCCCCceeeeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999764
No 41
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=25.07 E-value=71 Score=31.55 Aligned_cols=32 Identities=25% Similarity=0.572 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEEee----eccCCC
Q psy11503 80 KVFKDICNNLRETWPDIVNVAIYHRL----GNVPVS 111 (172)
Q Consensus 80 ~~l~~I~~e~~~~~~gi~~v~i~Hr~----G~l~vG 111 (172)
.-|..++++++++||+|..|.+||-+ |-+.|.
T Consensus 288 ~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~ 323 (747)
T PF05691_consen 288 SGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPD 323 (747)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCC
Confidence 67999999999999889999999976 455553
No 42
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=24.93 E-value=96 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=21.8
Q ss_pred EEEEEeeCcchHHHHHHHHHHHHHHh
Q psy11503 114 SVVIAISSPHRQTALSAVEHAINKLK 139 (172)
Q Consensus 114 ~v~Vavas~hR~~af~A~~~~id~lK 139 (172)
+-=|.|.++.|++|+..++.+++++.
T Consensus 51 iaKliv~g~~R~~Ai~~l~~AL~e~~ 76 (107)
T PF02785_consen 51 IAKLIVHGPDREEAIARLRRALAETV 76 (107)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHE
T ss_pred hhhheeeccchHHHHHHHHhhcceEE
Confidence 33478889999999999999998864
No 43
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=24.46 E-value=58 Score=22.21 Aligned_cols=19 Identities=5% Similarity=0.261 Sum_probs=15.5
Q ss_pred eeeccCCCCeEEEEEeeCc
Q psy11503 104 RLGNVPVSEASVVIAISSP 122 (172)
Q Consensus 104 r~G~l~vGe~~v~Vavas~ 122 (172)
..|.+++||.+++++..+.
T Consensus 62 ~~g~~~~Gd~vl~~~~G~G 80 (90)
T PF08541_consen 62 EEGRIKPGDRVLLVGFGAG 80 (90)
T ss_dssp HTTSSCTTEEEEEEEEETT
T ss_pred HcCCCCCCCEEEEEEEEhh
Confidence 4468899999999998764
No 44
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=24.43 E-value=3.6e+02 Score=21.40 Aligned_cols=91 Identities=8% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhcCCcccccccCCCccccccccccccccceeeEEEEeeC-hhHHHHHHHHHHHHHHhhCCCccEEEEEE
Q psy11503 25 SAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMWRVVSLHYEAY-KSMALKVFKDICNNLRETWPDIVNVAIYH 103 (172)
Q Consensus 25 ~a~~~lId~lK~~~PIwKke~~~~G~~~~~~wv~nse~G~~V~~L~ye~y-~~ma~~~l~~I~~e~~~~~~gi~~v~i~H 103 (172)
.+.+.|+...+...+=|+-..-.+|.- -|.+..+++.++....-+.. +.-+.+.+..+. +.+.+|. ..+.=..
T Consensus 5 ~~~~~ll~~~~~~~~~W~~~~~~~gi~---I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~-d~r~~Wd--~~~~~~~ 78 (197)
T cd08869 5 RCVQDLLREARDKSKGWVSVSSSDHVE---LAFKKVDDGHPLRLWRASTEVEAPPEEVLQRIL-RERHLWD--DDLLQWK 78 (197)
T ss_pred HHHHHHHHHHhhccCCceEEecCCcEE---EEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHH-HHHhccc--hhhheEE
Confidence 456788888888778898665666642 35454433333332222222 112345555554 4567784 3333344
Q ss_pred eeeccCCCCeEEEEEeeC
Q psy11503 104 RLGNVPVSEASVVIAISS 121 (172)
Q Consensus 104 r~G~l~vGe~~v~Vavas 121 (172)
.+..+.....+++..+++
T Consensus 79 vie~id~~~~i~y~~~~~ 96 (197)
T cd08869 79 VVETLDEDTEVYQYVTNS 96 (197)
T ss_pred EEEEecCCcEEEEEEeeC
Confidence 444445566777766655
No 45
>smart00193 PTN Pleiotrophin / midkine family. Heparin-binding domain family.
Probab=23.86 E-value=30 Score=24.45 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCc-ccccccCCCccccccccc-cccccceee
Q psy11503 27 VEHAINKLKEMAPI-WKKEEYAPGTHTDAQWKE-NSECMWRVV 67 (172)
Q Consensus 27 ~~~lId~lK~~~PI-wKke~~~~G~~~~~~wv~-nse~G~~V~ 67 (172)
|.+.+..+|=.+|- |||+++.|=-..|..|-+ +...|.+..
T Consensus 25 C~~~tkk~kCkiPCNwKK~fGadCKYkf~~WgeCD~~Tg~k~R 67 (80)
T smart00193 25 CGQETRKLKCKIPCNWKKQFGADCKYKFESWGECDANTGLKTR 67 (80)
T ss_pred hhhhhheeeeeccccchhhcCcccceeccCccccccccCcccc
Confidence 78888999999998 999998887666778877 333444433
No 46
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.49 E-value=1.6e+02 Score=20.11 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=29.1
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHHHHHHhhhcCCccc
Q psy11503 5 PVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWK 42 (172)
Q Consensus 5 ~~ge~~v~v~v~s~hR~~af~a~~~lId~lK~~~PIwK 42 (172)
...+..+.|++.+..-..||++++.-+++-=-..|-|+
T Consensus 9 ~~~~~~~~viv~Ae~ee~AF~~~e~eler~fl~~P~v~ 46 (64)
T PF13046_consen 9 TLEEGPIPVIVAAENEEQAFRLVEVELERHFLPLPEVK 46 (64)
T ss_pred EecCCcEEEEEEecCHHHHHHHHHHHhhhhccCCCCce
Confidence 34677888889999999999999988877544445444
No 47
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=23.13 E-value=91 Score=22.92 Aligned_cols=24 Identities=13% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEeeCcchHHHHHHHHHHHHHHh
Q psy11503 116 VIAISSPHRQTALSAVEHAINKLK 139 (172)
Q Consensus 116 ~Vavas~hR~~af~A~~~~id~lK 139 (172)
-|.|.++.|.+|+.-+..+++++.
T Consensus 53 Kliv~g~~R~~A~~rl~~aL~e~~ 76 (107)
T smart00878 53 KLIVHGETREEAIARLRRALDEFR 76 (107)
T ss_pred EEEEEcCCHHHHHHHHHHHHHhCE
Confidence 467889999999999998887754
No 48
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=23.11 E-value=89 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEEee----eccCCC
Q psy11503 80 KVFKDICNNLRETWPDIVNVAIYHRL----GNVPVS 111 (172)
Q Consensus 80 ~~l~~I~~e~~~~~~gi~~v~i~Hr~----G~l~vG 111 (172)
.-|+.++++++++|++|..|.+||-+ |-+.|+
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~ 425 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPG 425 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCC
Confidence 47899999999999889999999976 556665
No 49
>PRK14444 acylphosphatase; Provisional
Probab=22.83 E-value=2.2e+02 Score=20.18 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=23.0
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhC
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETW 93 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~ 93 (172)
.|||+|..+|. | .+..+-. ...|++..+.+.+..
T Consensus 33 ~G~V~N~~dG~-V-ei~~qG~----~~~i~~f~~~l~~gp 66 (92)
T PRK14444 33 KGWVRNLSDGR-V-EAVFEGS----RPAVQKMISWCYSGP 66 (92)
T ss_pred EEEEEECCCCc-E-EEEEEcC----HHHHHHHHHHHHhCC
Confidence 49999987764 3 3556665 556777777777543
No 50
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=22.11 E-value=4.3e+02 Score=25.58 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=47.6
Q ss_pred eeeEEEEeeChhHHHHHH-------HHHHHHHHhhCCCccEEEEEEeee------------------ccCCCCeEEEEEe
Q psy11503 65 RVVSLHYEAYKSMALKVF-------KDICNNLRETWPDIVNVAIYHRLG------------------NVPVSEASVVIAI 119 (172)
Q Consensus 65 ~V~~L~ye~y~~ma~~~l-------~~I~~e~~~~~~gi~~v~i~Hr~G------------------~l~vGe~~v~Vav 119 (172)
.|.+|-+.-...+..+++ .++.+-++ ++ |...+. |--+ .+..||.+++++
T Consensus 298 ~VkaI~vpg~~~lsrkei~pgrr~gdeL~e~aK-~~-GakGL~--~~delp~~~it~eev~~L~e~l~ak~GD~ll~vA- 372 (620)
T TIGR00134 298 SVKAVLLRGFDGLVGVEIQPGRRLGTEFADYAK-KR-GVGGIF--HTDELPAYGITEEEVRGLRDAVGAEQGDAVVMVA- 372 (620)
T ss_pred eEEEEEcCCCcccchhhhcccccchHHHHHHHH-Hc-CCCceE--eecccccCCCCHHHHHHHHHHhCCCCCCEEEEEc-
Confidence 577777776656778788 56655555 55 455543 2222 124687777666
Q ss_pred eCcchHHHHHHHHHHHHHHhhh
Q psy11503 120 SSPHRQTALSAVEHAINKLKEM 141 (172)
Q Consensus 120 as~hR~~af~A~~~~id~lK~~ 141 (172)
...+.+..|+..+++|.|..
T Consensus 373 --dk~~~v~~aL~~v~~R~ke~ 392 (620)
T TIGR00134 373 --HERVTVERALREVIERAKMA 392 (620)
T ss_pred --CcHHHHHHHHHHHHhhhhhh
Confidence 56688999999999999975
No 51
>PRK14445 acylphosphatase; Provisional
Probab=21.82 E-value=2.5e+02 Score=19.74 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=22.1
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhh
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRET 92 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~ 92 (172)
.|||+|..+|. |+ +..+.. .+.|++..+.+.+-
T Consensus 33 ~G~V~N~~dG~-Ve-i~~qG~----~~~l~~f~~~l~~g 65 (91)
T PRK14445 33 SGWVRNLPDGT-VE-IEAQGS----SGMIDELIKQAERG 65 (91)
T ss_pred EEEEEECCCCe-EE-EEEEEC----HHHHHHHHHHHHhC
Confidence 49999988764 33 556665 45677777777643
No 52
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=21.25 E-value=1.2e+02 Score=26.81 Aligned_cols=35 Identities=9% Similarity=0.012 Sum_probs=30.4
Q ss_pred CCCeEEEEEeeCcchHHHHHHHHHHHHHHhhhCcc
Q psy11503 110 VSEASVVIAISSPHRQTALSAVEHAINKLKEMAPI 144 (172)
Q Consensus 110 vGe~~v~Vavas~hR~~af~A~~~~id~lK~~vpi 144 (172)
-|+-++.|.+.++.+++|.+.+..+++.|+-.--.
T Consensus 374 ~g~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~~ 408 (420)
T PRK00885 374 NGGRVLCVTALGDTLEEAQKRAYAALDKIDFDGGF 408 (420)
T ss_pred eCCEEEEEEEecCCHHHHHHHHHHHHhccCCCCCE
Confidence 45778899999999999999999999999866544
No 53
>PF06421 LepA_C: GTP-binding protein LepA C-terminus; InterPro: IPR013842 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family is unknown. This entry represents the C-terminal region of these proteins [].; PDB: 2YWF_A 2YWE_A 2YWG_A 2YWH_A 3CB4_F 3DEG_C.
Probab=20.72 E-value=1.7e+02 Score=21.92 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=42.2
Q ss_pred ccceeeEEEEeeChhHHHHHHHHHHHHHHhhCC-CccEEEEEEeeeccCCCCeEEEEEeeCcchHHHHHHH
Q psy11503 62 CMWRVVSLHYEAYKSMALKVFKDICNNLRETWP-DIVNVAIYHRLGNVPVSEASVVIAISSPHRQTALSAV 131 (172)
Q Consensus 62 ~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~-gi~~v~i~Hr~G~l~vGe~~v~Vavas~hR~~af~A~ 131 (172)
+|++|.+|.+=.+...|...=++|++.+++.-| ....|.|.-.+|. -++.=-.-.+-|+++..-|
T Consensus 2 N~~~VdaLs~ivhr~~a~~~gr~~v~kLK~~IPRq~fev~IQA~ig~-----kiIARetI~a~RKdV~akc 67 (108)
T PF06421_consen 2 NGEPVDALSFIVHRSKAQRRGREIVEKLKELIPRQQFEVPIQAAIGG-----KIIARETIKALRKDVTAKC 67 (108)
T ss_dssp TTCEEGGGEEEEECCCHHHHHHHHHHHHHHHS-S-SS-EEEEEEETT-----EEEEEEEE----TT-----
T ss_pred CCCCcchhhhhhhHHHHHHHHHHHHHHHHHhcCHHHhhhhhhHHhCC-----eeEEecccHHHHHHHHHHh
Confidence 468999999999999999999999999988766 3567888888775 4444444556666655433
No 54
>PRK14449 acylphosphatase; Provisional
Probab=20.22 E-value=2.9e+02 Score=19.38 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=23.3
Q ss_pred ccccccccccceeeEEEEeeChhHHHHHHHHHHHHHHhhCC
Q psy11503 54 AQWKENSECMWRVVSLHYEAYKSMALKVFKDICNNLRETWP 94 (172)
Q Consensus 54 ~~wv~nse~G~~V~~L~ye~y~~ma~~~l~~I~~e~~~~~~ 94 (172)
.|||+|..+|. | .+..+-. ...|++.++.+++..|
T Consensus 32 ~G~V~N~~dG~-V-ei~~~G~----~~~v~~f~~~l~~~~~ 66 (90)
T PRK14449 32 TGYAENLYDGS-V-EVVAEGD----EENIKELINFIKTGLR 66 (90)
T ss_pred EEEEEECCCCe-E-EEEEEeC----HHHHHHHHHHHhhCCC
Confidence 49999988773 3 3445655 4567777777776544
Done!