RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11503
(172 letters)
>gnl|CDD|238385 cd00756, MoaE, MoaE family. Members of this family are involved in
biosynthesis of the molybdenum cofactor (Moco), an
essential cofactor for a diverse group of redox enzymes.
Moco biosynthesis is an evolutionarily conserved pathway
present in eubacteria, archaea and eukaryotes. Moco
contains a tricyclic pyranopterin, termed molybdopterin
(MPT), which carries the cis-dithiolene group
responsible for molybdenum ligation. This dithiolene
group is generated by MPT synthase in the second major
step in Moco biosynthesis. MPT synthase is a
heterotetramer consisting of two large (MoaE) and two
small (MoaD) subunits.
Length = 124
Score = 111 bits (279), Expect = 4e-32
Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
V +L YEAY MA K ++I RE W ++ VAI HR+G +P EA V++A+SSPHR
Sbjct: 33 GVEALEYEAYPPMAEKELEEIAEEARERWG-LLRVAIIHRVGRLPPGEAIVLVAVSSPHR 91
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWK 161
+ A A E I++LK APIWKKE + +W
Sbjct: 92 KEAFEACEFLIDRLKHRAPIWKKEIFE----GGEEWV 124
Score = 67.9 bits (167), Expect = 3e-15
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWK 57
+G +P EA V++A+SSPHR+ A A E I++LK APIWKKE + +W
Sbjct: 72 VGRLPPGEAIVLVAVSSPHRKEAFEACEFLIDRLKHRAPIWKKEIFE----GGEEWV 124
>gnl|CDD|178014 PLN02390, PLN02390, molybdopterin synthase catalytic subunit.
Length = 111
Score = 107 bits (270), Expect = 6e-31
Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
V+ L YEAY MAL+ + IC+ R W + +A+ HRLG VPV E SV +A+SS HR
Sbjct: 22 TVLELRYEAYVPMALRELRKICDEARSRW-SLHKIAVAHRLGPVPVGETSVFVAVSSVHR 80
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPG 153
AL A + I++LK PIWKKE Y G
Sbjct: 81 ADALDACKFLIDELKASVPIWKKEVYDDG 109
Score = 68.9 bits (169), Expect = 1e-15
Identities = 27/49 (55%), Positives = 32/49 (65%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPG 49
LG VPV E SV +A+SS HR AL A + I++LK PIWKKE Y G
Sbjct: 61 LGPVPVGETSVFVAVSSVHRADALDACKFLIDELKASVPIWKKEVYDDG 109
>gnl|CDD|223391 COG0314, MoaE, Molybdopterin converting factor, large subunit
[Coenzyme metabolism].
Length = 149
Score = 102 bits (256), Expect = 2e-28
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
RV +L YEAY MA K ++I +E W ++ VAI HR+G + + EA V++ ++S HR
Sbjct: 46 RVEALEYEAYPEMAEKELEEIAAEAKEKWG-LLRVAIIHRIGELKIGEAIVLVGVASAHR 104
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTH 155
+ A A E+ I++LK APIWKKE G
Sbjct: 105 KEAFEACEYIIDRLKHRAPIWKKEHTEDGER 135
Score = 59.2 bits (144), Expect = 1e-11
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTH 51
+G + + EA V++ ++S HR+ A A E+ I++LK APIWKKE G
Sbjct: 85 IGELKIGEAIVLVGVASAHRKEAFEACEYIIDRLKHRAPIWKKEHTEDGER 135
>gnl|CDD|111299 pfam02391, MoaE, MoaE protein. This family contains the MoaE
protein that is involved in biosynthesis of
molybdopterin. Molybdopterin, the universal component of
the pterin molybdenum cofactors, contains a dithiolene
group serving to bind Mo. Addition of the dithiolene
sulfurs to a molybdopterin precursor requires the
activity of the converting factor. Converting factor
contains the MoaE and MoaD proteins.
Length = 117
Score = 87.3 bits (217), Expect = 6e-23
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
RV L YEAY MA K +I RE WP ++VA+ HRLG + + EA+V+IA+S+PHR
Sbjct: 41 RVSRLEYEAYPEMAEKELAEIVEEAREKWP-GIDVAVVHRLGELQIGEAAVLIAVSAPHR 99
Query: 125 QTALSAVEHAINKLKE 140
+ A A E+AI++LK+
Sbjct: 100 KEAFEACEYAIDELKK 115
Score = 47.3 bits (113), Expect = 2e-07
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKE 36
LG + + EA+V+IA+S+PHR+ A A E+AI++LK+
Sbjct: 80 LGELQIGEAAVLIAVSAPHRKEAFEACEYAIDELKK 115
>gnl|CDD|237730 PRK14493, PRK14493, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoaE;
Provisional.
Length = 274
Score = 70.4 bits (173), Expect = 4e-15
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
L +E Y +A + I L++ + V ++HR G + E V + + + HR
Sbjct: 179 PTEYLEFEKYDGVADERMAAIREELKQR-DGVFEVLLHHRTGVIEAGEDIVFVVVLAGHR 237
Query: 125 QTALSAVEHAINKLKEMAPIWKKE 148
Q A AV I++LK+ PI+KKE
Sbjct: 238 QEAFRAVSDGIDRLKDEVPIFKKE 261
Score = 49.2 bits (118), Expect = 2e-07
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 2 GNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKE 44
G + E V + + + HRQ A AV I++LK+ PI+KKE
Sbjct: 219 GVIEAGEDIVFVVVLAGHRQEAFRAVSDGIDRLKDEVPIFKKE 261
>gnl|CDD|182642 PRK10678, moaE, molybdopterin guanine dinucleotide biosynthesis
protein MoaE; Provisional.
Length = 150
Score = 56.7 bits (137), Expect = 1e-10
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
V +L E Y M K +I + R WP + V + HR+G + + V + ++S HR
Sbjct: 46 SVKALTLEHYPGMTEKALAEIVDEARSRWP-LGRVTVIHRVGELWPGDEIVFVGVTSAHR 104
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPG 153
+A A + ++ LK AP WK+E G
Sbjct: 105 SSAFEAGQFIMDYLKTRAPFWKREATPEG 133
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 11 VVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPG 49
V + ++S HR +A A + ++ LK AP WK+E G
Sbjct: 95 VFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEG 133
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 27.4 bits (62), Expect = 4.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 19 HRQTALSAVEHAINKLKE 36
R+ AL AV +++LKE
Sbjct: 213 DREVALFAVGPLLDELKE 230
Score = 27.4 bits (62), Expect = 4.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 123 HRQTALSAVEHAINKLKE 140
R+ AL AV +++LKE
Sbjct: 213 DREVALFAVGPLLDELKE 230
>gnl|CDD|140254 PTZ00227, PTZ00227, variable surface protein Vir14; Provisional.
Length = 418
Score = 26.8 bits (59), Expect = 5.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 69 LHYEAYKSMA------LKVFKDICNNLRETWPDIVN 98
L+ E Y ++ K FKDI L+E W +IV+
Sbjct: 104 LYNEVYNNLQSSSENDTKYFKDISTRLQEVWKNIVD 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.126 0.393
Gapped
Lambda K H
0.267 0.0854 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,436,055
Number of extensions: 720303
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 29
Length of query: 172
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 82
Effective length of database: 6,945,742
Effective search space: 569550844
Effective search space used: 569550844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.7 bits)