RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11503
(172 letters)
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme
biosynthesis, structural genomics, NPPSFA; 2.00A
{Aquifex aeolicus}
Length = 154
Score = 121 bits (305), Expect = 7e-36
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
+ +L YEAY MA+K + I E + + V I+HRLG V + E S ++ HR
Sbjct: 50 NIEALEYEAYPEMAIKEMEKIRQETIEKFG-VKEVFIHHRLGLVKIGEPSFLVLAVGGHR 108
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSEC 166
+ A +A+++ K+ PIWKKE + G +W +
Sbjct: 109 EETFKACRYAVDETKKRVPIWKKEIFKEGK---GEWVLGEKK 147
Score = 75.4 bits (186), Expect = 5e-18
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS 60
LG V + E S ++ HR+ A +A+++ K+ PIWKKE + G +W
Sbjct: 89 LGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFKEGK---GEWVLGE 145
Query: 61 EC 62
+
Sbjct: 146 KK 147
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase,
MOAD, MOAE, transferase, molybdenum cofactor
biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Length = 149
Score = 120 bits (302), Expect = 2e-35
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
+ L YEAY MA K I + + E WP +I HR+G + +S+ +V+IA+SSPHR
Sbjct: 44 KTEYLEYEAYIPMAEKKLAQIGDEINEKWP-GTITSIVHRIGPLQISDIAVLIAVSSPHR 102
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSECMW 168
+ A A E+AI ++KE+ PIWKKE + G+ W+ + + +
Sbjct: 103 KDAYRANEYAIERIKEIVPIWKKEIWEDGSK----WQGHQKGNY 142
Score = 75.0 bits (185), Expect = 7e-18
Identities = 25/64 (39%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS 60
+G + +S+ +V+IA+SSPHR+ A A E+AI ++KE+ PIWKKE + G+ W+ +
Sbjct: 83 IGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSK----WQGHQ 138
Query: 61 ECMW 64
+ +
Sbjct: 139 KGNY 142
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A
{Mycobacterium tuberculosis}
Length = 147
Score = 119 bits (300), Expect = 3e-35
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
V L YEAY M ++ I + V VA+ HR G + + +A+VVI S+PHR
Sbjct: 52 DVTRLFYEAYPPMVIRTLMSIIGRCEDKAE-GVRVAVAHRTGELQIGDAAVVIGASAPHR 110
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKEN 163
A A I LK+ PIWKKE + G W +
Sbjct: 111 AEAFDAARMCIELLKQEVPIWKKEFSSTGAE----WVGD 145
Score = 73.1 bits (180), Expect = 3e-17
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKEN 59
G + + +A+VVI S+PHR A A I LK+ PIWKKE + G W +
Sbjct: 91 TGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAE----WVGD 145
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor
biosynthesis, transferase; 1.45A {Escherichia coli}
SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Length = 150
Score = 117 bits (296), Expect = 1e-34
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 65 RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
V +L E Y M K +I + R WP + V + HR+G + + V + ++S HR
Sbjct: 46 SVNALTLEHYPGMTEKALAEIVDEARNRWP-LGRVTVIHRIGELWPGDEIVFVGVTSAHR 104
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSEC 166
+A A + ++ LK AP WK+E G W E E
Sbjct: 105 SSAFEAGQFIMDYLKTRAPFWKREATPEGDR----WVEARES 142
Score = 73.1 bits (180), Expect = 3e-17
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS 60
+G + + V + ++S HR +A A + ++ LK AP WK+E G W E
Sbjct: 85 IGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDR----WVEAR 140
Query: 61 EC 62
E
Sbjct: 141 ES 142
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology,
structural genomics, midwest center for S genomics,
transferase; 1.90A {Helicobacter pylori}
Length = 148
Score = 111 bits (279), Expect = 5e-32
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 66 VVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHRQ 125
+ L ++ Y+++ F+ + ++ + + H LG+V + ++S + +R+
Sbjct: 46 IQGLSFDIYEALLKTWFEKWHHKAKDLGVV---LKMAHSLGDVLIGQSSFLCVSMGKNRK 102
Query: 126 TALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSE 165
AL E+ I K APIWK + + +
Sbjct: 103 NALELYENFIEDFKHNAPIWKYDLIHNKRI----YAKERS 138
Score = 71.6 bits (176), Expect = 1e-16
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 1 LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS 60
LG+V + ++S + +R+ AL E+ I K APIWK + + +
Sbjct: 82 LGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIWKYDLIHNKRI----YAKER 137
Query: 61 E 61
Sbjct: 138 S 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.100
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 25/94 (26%)
Query: 71 YEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPH---RQT- 126
E Y +M + D + + +I +E S S T
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEI--------------NEHSTSYTFRSEKGLLSATQ 1730
Query: 127 ----ALSAVEHAINK-LKEMAPIWKKEEYAPGTH 155
AL+ +E A + LK I +A G H
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFA-G-H 1762
Score = 30.8 bits (69), Expect = 0.27
Identities = 31/170 (18%), Positives = 48/170 (28%), Gaps = 79/170 (46%)
Query: 21 QTALSAVEHAINK-LKEMAPIWKKEEYAPGTHTDAQWKENSECMWRVVSL-HYEAYKSMA 78
Q AL+ +E A + LK I +A G H SL Y A S+A
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFA-G-H----------------SLGEYAALASLA 1774
Query: 79 LKVFKDICNNLRETWPDIVNVAIYHRLGN-----VPVSE-------------ASVVIAIS 120
V + +V V +++R G VP E V + S
Sbjct: 1775 -DVM---------SIESLVEV-VFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 121 -------------------------SPHRQTALS----AVEHAINKLKEM 141
++Q + A++ N L +
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Score = 26.6 bits (58), Expect = 6.5
Identities = 4/25 (16%), Positives = 10/25 (40%), Gaps = 4/25 (16%)
Query: 17 SPHRQTALS----AVEHAINKLKEM 37
++Q + A++ N L +
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFI 1872
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 27.0 bits (61), Expect = 3.0
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 23 ALSAVEHAINKLKEMAPIWKK 43
L + I +L+ M+P++++
Sbjct: 362 LLEVLPGVIERLRSMSPLYRR 382
Score = 27.0 bits (61), Expect = 3.0
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 127 ALSAVEHAINKLKEMAPIWKK 147
L + I +L+ M+P++++
Sbjct: 362 LLEVLPGVIERLRSMSPLYRR 382
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 26.5 bits (59), Expect = 4.4
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 20 RQTALSAVEHAINKLKEMAPIWKKEEYAPGTH 51
R ++AVE + + +E+ + +E+ +P
Sbjct: 273 RSLLINAVEASCIRTRELQSMADQEQVSPAAI 304
Score = 26.5 bits (59), Expect = 4.4
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 124 RQTALSAVEHAINKLKEMAPIWKKEEYAPGTH 155
R ++AVE + + +E+ + +E+ +P
Sbjct: 273 RSLLINAVEASCIRTRELQSMADQEQVSPAAI 304
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 26.3 bits (59), Expect = 6.6
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 23 ALSAVEHAINKLKEMAPIWKKEEYAPGTHTDA-QWKE 58
+ V +I +L++++P+W E Y G ++ +W
Sbjct: 388 TIELVRKSIGRLRDLSPLW--EMYKQGVDLNSIEWAH 422
Score = 26.3 bits (59), Expect = 6.6
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 127 ALSAVEHAINKLKEMAPIWKKEEYAPGTHTDA-QWKE 162
+ V +I +L++++P+W E Y G ++ +W
Sbjct: 388 TIELVRKSIGRLRDLSPLW--EMYKQGVDLNSIEWAH 422
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA
binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Length = 1308
Score = 26.0 bits (56), Expect = 8.6
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Query: 69 LHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPV----SEASVVIAISSPHR 124
+ + +D+ ++ DI + + V + A V +
Sbjct: 1029 FSLHVLYKSPVTLLRDLSQDIHGQLGDIDQDVEIEKTDHFAVVNLRTAAPTVCLLVLSQA 1088
Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSECM 167
+ L V+ I K+K A + +Q + +
Sbjct: 1089 EKVLEEVDWLIAKIKGSANQETLSDKVTPEDASSQAVPPTLLI 1131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.126 0.393
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,619,491
Number of extensions: 140169
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 34
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)