RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11503
         (172 letters)



>d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE
           {Escherichia coli [TaxId: 562]}
          Length = 149

 Score = 82.7 bits (204), Expect = 2e-21
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 65  RVVSLHYEAYKSMALKVFKDICNNLRETWPDIVNVAIYHRLGNVPVSEASVVIAISSPHR 124
            V +L  E Y  M  K   +I +  R  WP +  V + HR+G +   +  V + ++S HR
Sbjct: 45  SVNALTLEHYPGMTEKALAEIVDEARNRWP-LGRVTVIHRIGELWPGDEIVFVGVTSAHR 103

Query: 125 QTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENSEC 166
            +A  A +  ++ LK  AP WK+E    G      W E  E 
Sbjct: 104 SSAFEAGQFIMDYLKTRAPFWKREATPEGDR----WVEARES 141



 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 1   LGNVPVSEASVVIAISSPHRQTALSAVEHAINKLKEMAPIWKKEEYAPGTHTDAQWKENS 60
           +G +   +  V + ++S HR +A  A +  ++ LK  AP WK+E    G      W E  
Sbjct: 84  IGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDR----WVEAR 139

Query: 61  EC 62
           E 
Sbjct: 140 ES 141


>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
           [TaxId: 562]}
          Length = 391

 Score = 28.0 bits (61), Expect = 0.63
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 23  ALSAVEHAINKLKEMAPIWKK 43
            +  V  +I +L++++P+W+ 
Sbjct: 368 TIELVRKSIGRLRDLSPLWEM 388



 Score = 28.0 bits (61), Expect = 0.63
 Identities = 5/21 (23%), Positives = 14/21 (66%)

Query: 127 ALSAVEHAINKLKEMAPIWKK 147
            +  V  +I +L++++P+W+ 
Sbjct: 368 TIELVRKSIGRLRDLSPLWEM 388


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.126    0.393 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 648,214
Number of extensions: 26881
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 8
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.8 bits)