BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11505
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
NK++ LL+ EPE + + D ++ + +L DL DRELV IIGWAK IPGF+ LSL
Sbjct: 3 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 62
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGF----SEIYQQV 190
DQM LLQS W EIL L + YRSL ++ +A D ++DE Q++ G + I Q V
Sbjct: 63 ADQMSLLQSAWMEILILGVVYRSLS-FEDELVYADDYIMDEDQSKLAGLLDLNNAILQLV 121
Query: 191 KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGA-- 248
K S+ +++EE + + S V + + + +Q Y +
Sbjct: 122 KKYKSM-KLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPR 180
Query: 249 -CGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEML 307
G +++ ++ +++ F N + +GKV M+KLF+EML
Sbjct: 181 RAGKMLMTLPLLRQTSTKAVQHFYN------------------IKLEGKVPMHKLFLEML 222
Query: 308 EA 309
EA
Sbjct: 223 EA 224
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
NK++ LL+ EPE + + D ++ + +L DL DRELV IIGWAK IPGF+ LSL
Sbjct: 7 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 66
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGF----SEIYQQV 190
DQM LLQS W EIL L + YRSL ++ +A D ++DE Q++ G + I Q V
Sbjct: 67 ADQMSLLQSAWMEILILGVVYRSLS-FEDELVYADDYIMDEDQSKLAGLLDLNNAILQLV 125
Query: 191 KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGA-- 248
K S+ +++EE + + S V + + + +Q Y +
Sbjct: 126 KKYKSM-KLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPR 184
Query: 249 -CGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEML 307
G +++ ++ +++ F N + +GKV M+KLF+EML
Sbjct: 185 RAGKMLMTLPLLRQTSTKAVQHFYN------------------IKLEGKVPMHKLFLEML 226
Query: 308 EA 309
EA
Sbjct: 227 EA 228
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
NK++ LL+ EPE + + D ++ + +L DL DRELV IIGWAK IPGF+ LSL
Sbjct: 28 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 87
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGF----SEIYQQV 190
DQM LLQS W EIL L + YRSL ++ +A D ++DE Q++ G + I Q V
Sbjct: 88 ADQMSLLQSAWMEILILGVVYRSLS-FEDELVYADDYIMDEDQSKLAGLLDLNNAILQLV 146
Query: 191 KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGA-- 248
K S+ +++EE + + S V + + + +Q Y +
Sbjct: 147 KKYKSM-KLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPR 205
Query: 249 -CGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEML 307
G +++ ++ +++ F N + +GKV M+KLF+EML
Sbjct: 206 RAGKMLMTLPLLRQTSTKAVQHFYN------------------IKLEGKVPMHKLFLEML 247
Query: 308 EA 309
EA
Sbjct: 248 EA 249
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
NK++ LL+ EPE + + D ++ + +L DL DRELV IIGWAK IPGF+ LSL
Sbjct: 28 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 87
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGF----SEIYQQV 190
DQM LLQS W EIL L + YRSL ++ +A D ++DE Q++ G + I Q V
Sbjct: 88 ADQMSLLQSAWMEILILGVVYRSLS-FEDELVYADDYIMDEDQSKLAGLLDLNNAILQLV 146
Query: 191 KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGA-- 248
K S+ +++EE + + S V + + + +Q Y +
Sbjct: 147 KKYKSM-KLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPR 205
Query: 249 -CGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEML 307
G +++ ++ +++ F N + +GKV M+KLF+EML
Sbjct: 206 RAGKMLMTLPLLRQTSTKAVQHFYN------------------IKLEGKVPMHKLFLEML 247
Query: 308 EA 309
EA
Sbjct: 248 EA 249
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
NK++ LL+ EPE + + D ++ + +L DL DRELV IIGWAK IPGF+ LSL
Sbjct: 4 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 63
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGF----SEIYQQV 190
DQM LLQS W EIL L + YRSL ++ +A D ++DE Q++ G + I Q V
Sbjct: 64 ADQMSLLQSAWMEILILGVVYRSLS-FEDELVYADDYIMDEDQSKLAGLLDLNNAILQLV 122
Query: 191 KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGA-- 248
K S+ +++EE + + S V + + + +Q Y +
Sbjct: 123 KKYKSM-KLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPR 181
Query: 249 -CGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEML 307
G +++ ++ +++ F N + +GKV M+KLF+EML
Sbjct: 182 RAGKMLMTLPLLRQTSTKAVQHFYN------------------IKLEGKVPMHKLFLEML 223
Query: 308 EA 309
EA
Sbjct: 224 EA 225
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
NK++ LL+ EPE + + D ++ + +L DL DRELV IIGWAK IPGF+ LSL
Sbjct: 20 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 79
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGF----SEIYQQV 190
DQM LLQS W EIL L + YRSL ++ +A D ++DE Q++ G + I Q V
Sbjct: 80 ADQMSLLQSAWMEILILGVVYRSL-SFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLV 138
Query: 191 KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGA-- 248
K S+ +++EE + + S V + + + +Q Y +
Sbjct: 139 KKYKSM-KLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPR 197
Query: 249 -CGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEML 307
G +++ ++ +++ F N + +GKV M+KLF+EML
Sbjct: 198 RAGKMLMTLPLLRQTSTKAVQHFYN------------------IKLEGKVPMHKLFLEML 239
Query: 308 EA 309
EA
Sbjct: 240 EA 241
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
N ++ LL+ EPE L + D L + +LSDL+DRE+V I WAK IPGF+ LSL
Sbjct: 19 NALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLSDLFDREIVVTISWAKSIPGFSSLSL 78
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEI 186
+DQM +LQS W E+L L +A RSLP ++ FA DLVLDE AR G E+
Sbjct: 79 SDQMSVLQSVWMEVLVLGVAQRSLP-LQDELAFAEDLVLDEEGARAAGLGEL 129
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 118/252 (46%), Gaps = 19/252 (7%)
Query: 65 PNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAK 124
P S + N ++ LL+ EPE L + D L + +L DL+DRE+V I WAK
Sbjct: 15 PRGSKTAAPVNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAK 74
Query: 125 QIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFS 184
IPGF+ LSL+DQM +LQS W E+L L +A RSLP ++ FA DLVLDE AR G
Sbjct: 75 SIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLP-LQDELAFAEDLVLDEEGARAAGLG 133
Query: 185 E----IYQQVKHSGSLDGIKEE-ELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQV 239
E + Q V+ +L +EE L + L L D H + EA + + +
Sbjct: 134 ELGAALLQLVRRLQALRLEREEYVLLKALALANSD---SVH--IEDAEAVEQLREALHEA 188
Query: 240 YSGYRQTGACGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLM 299
Y E + ++ VL + V +GKV M
Sbjct: 189 LLEYEAG--------RAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPM 240
Query: 300 NKLFVEMLEAYL 311
+KLF+EMLEA +
Sbjct: 241 HKLFLEMLEAMM 252
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
N ++ LL+ EPE L + D L + +L DL+DRE+V I WAK IPGF+ LSL
Sbjct: 20 NALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSL 79
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEI 186
+DQM +LQS W E+L L +A RSLP ++ FA DLVLDE AR G E+
Sbjct: 80 SDQMSVLQSVWMEVLVLGVAQRSLP-LQDELAFAEDLVLDEEGARAAGLGEL 130
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
N ++ LL+ EPE L + D L + +L DL+DRE+V I WAK IPGF+ LSL
Sbjct: 19 NALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSL 78
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEI 186
+DQM +LQS W E+L L +A RSLP ++ FA DLVLDE AR G E+
Sbjct: 79 SDQMSVLQSVWMEVLVLGVAQRSLP-LQDELAFAEDLVLDEEGARAAGLGEL 129
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 10/192 (5%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS 60
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG RN + +
Sbjct: 171 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG----KDRNENEVE 226
Query: 61 QQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVC 118
N+ +P ++LEA L EP+ T +P+ + ++ D++L
Sbjct: 227 STSSANEDMPV---ERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFT 283
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
++ WAK+IP F++L L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSA 342
Query: 179 RECGFSEIYQQV 190
G I+ +V
Sbjct: 343 HSAGVGAIFDRV 354
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ +C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR 169
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In
Complex With Dna
Length = 98
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 51/57 (89%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPD 57
NIEY+CPA+N+CEI KRRRK+CQACRF K L+ GMLKEGVRLDRVRGGRQKY+R D
Sbjct: 38 NIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYKRRLD 94
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 35/35 (100%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+P+RLCLVCGD+ASG+HYGVASCEACKAFFKRTIQ
Sbjct: 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQ 36
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|2AYR|A Chain A, A Serm Designed For The Treatment Of Uterine Leiomyoma
With Unique Tissue Specificity For Uterus And Ovaries In
Rats
pdb|2Q70|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2Q70|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2POG|A Chain A, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2POG|B Chain B, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2QE4|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2QE4|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2R6W|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6W|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6Y|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
pdb|2R6Y|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
Length = 248
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 6 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 65
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+S W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 66 DLTLHDQVHLLESAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKSVEGMVEIFDM 124
Query: 190 VKHSGS 195
+ + S
Sbjct: 125 LLATSS 130
>pdb|2YAT|A Chain A, Crystal Structure Of Estradiol Derived Metal Chelate And
Estrogen Receptor-Ligand Binding Domain Complex
Length = 252
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 10 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 69
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+S W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 70 DLTLHDQVHLLESAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKSVEGMVEIFDM 128
Query: 190 VKHSGS 195
+ + S
Sbjct: 129 LLATSS 134
>pdb|1UOM|A Chain A, The Structure Of Estrogen Receptor In Complex With A
Selective And Potent Tetrahydroisochiolin Ligand.
pdb|1XQC|A Chain A, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|B Chain B, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|C Chain C, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|D Chain D, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
Length = 254
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 10 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 69
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+S W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 70 DLTLHDQVHLLESAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKSVEGMVEIFDM 128
Query: 190 VKHSGS 195
+ + S
Sbjct: 129 LLATSS 134
>pdb|1PCG|A Chain A, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|1PCG|B Chain B, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|2I0J|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|C Chain C, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|D Chain D, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
Length = 244
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 6 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 65
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+S W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 66 DLTLHDQVHLLESAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKSVEGMVEIFDM 124
Query: 190 VKHSGS 195
+ + S
Sbjct: 125 LLATSS 130
>pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 15 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 74
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 75 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 133
Query: 190 VKHSGS 195
+ + S
Sbjct: 134 LLATSS 139
>pdb|1ZKY|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|1ZKY|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B23|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2B23|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G44|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G44|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G5O|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G5O|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
Length = 257
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 12 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 71
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 72 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 130
Query: 190 VKHSGS 195
+ + S
Sbjct: 131 LLATSS 136
>pdb|2OCF|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 298
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 12 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 71
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 72 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 130
Query: 190 V 190
+
Sbjct: 131 L 131
>pdb|3UU7|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
Length = 251
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 8 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 67
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 68 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 126
Query: 190 VKHSGS 195
+ + S
Sbjct: 127 LLATSS 132
>pdb|3HM1|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
pdb|3HM1|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
Length = 253
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 12 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 71
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 72 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 130
Query: 190 VKHSGS 195
+ + S
Sbjct: 131 LLATSS 136
>pdb|3Q97|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 15 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 74
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 75 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 133
Query: 190 VKHSGS 195
+ + S
Sbjct: 134 LLATSS 139
>pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 8 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 67
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 68 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 126
Query: 190 VKHSGS 195
+ + S
Sbjct: 127 LLATSS 132
>pdb|2JFA|B Chain B, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
pdb|2BJ4|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
Length = 252
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 28 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 87
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 88 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 146
Query: 190 VKHSGS 195
+ + S
Sbjct: 147 LLATSS 152
>pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 16 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 75
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 76 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 134
Query: 190 VKHSGS 195
+ + S
Sbjct: 135 LLATSS 140
>pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 13 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 72
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 73 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 130
Query: 189 QVKHSGS 195
+ + S
Sbjct: 131 MLLATSS 137
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S+W
Sbjct: 22 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESSW 79
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD + + G EI+ + + S
Sbjct: 80 MEVLMMGLMWRSIDH-PGKLIFAPDLVLDRDEGKSVEGILEIFDMLLATTS 129
>pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 9 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 68
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 69 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 126
Query: 189 QVKHSGS 195
+ + S
Sbjct: 127 MLLATSS 133
>pdb|3UUC|A Chain A, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|B Chain B, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|C Chain C, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|D Chain D, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
Length = 251
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 8 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 67
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 68 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 125
Query: 189 QVKHSGS 195
+ + S
Sbjct: 126 MLLATSS 132
>pdb|2QZO|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 13 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 72
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 73 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 130
Query: 189 QVKHSGS 195
+ + S
Sbjct: 131 MLLATSS 137
>pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 15 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 74
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 75 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 132
Query: 189 QVKHSGS 195
+ + S
Sbjct: 133 MLLATSS 139
>pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 8 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 67
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 68 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 125
Query: 189 QVKHSGS 195
+ + S
Sbjct: 126 MLLATSS 132
>pdb|3UUA|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
pdb|3UUD|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 8 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 67
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 68 DLTLHDQVHLLEXAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 125
Query: 189 QVKHSGS 195
+ + S
Sbjct: 126 MLLATSS 132
>pdb|2BJ4|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
pdb|2JF9|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|C Chain C, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JFA|A Chain A, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
Length = 252
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 28 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 87
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 88 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 145
Query: 189 QVKHSGS 195
+ + S
Sbjct: 146 MLLATSS 152
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 13 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 72
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 73 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 130
Query: 189 QVKHSGS 195
+ + S
Sbjct: 131 MLLATSS 137
>pdb|3DT3|A Chain A, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|3DT3|B Chain B, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|2YJA|B Chain B, Stapled Peptides Binding To Estrogen Receptor Alpha
Length = 255
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 13 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 72
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 73 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 130
Query: 189 QVKHSGS 195
+ + S
Sbjct: 131 MLLATSS 137
>pdb|3L03|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
pdb|3L03|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
Length = 253
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 12 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 71
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 72 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 129
Query: 189 QVKHSGS 195
+ + S
Sbjct: 130 MLLATSS 136
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|2OUZ|A Chain A, Crystal Structure Of Estrogen Receptor Alpha-Lasofoxifene
Complex
Length = 253
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 9 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 68
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 69 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 126
Query: 189 QVKHSGS 195
+ + S
Sbjct: 127 MLLATSS 133
>pdb|2IOK|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
pdb|2IOK|B Chain B, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
Length = 254
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 9 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 68
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 69 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 126
Query: 189 QVKHSGS 195
+ + S
Sbjct: 127 MLLATSS 133
>pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4- Hydroxytamoxifen
pdb|1R5K|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|C Chain C, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
Length = 261
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 16 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 75
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 76 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 133
Query: 189 QVKHSGS 195
+ + S
Sbjct: 134 MLLATSS 140
>pdb|2QA8|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
Length = 258
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 13 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 72
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 73 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 130
Query: 189 QVKHSGS 195
+ + S
Sbjct: 131 MLLATSS 137
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 9 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 68
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 69 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 126
Query: 189 QVKHSGS 195
+ + S
Sbjct: 127 MLLATSS 133
>pdb|4DMA|A Chain A, Crystal Structure Of Era Lbd In Complex With Ru100132
pdb|4DMA|B Chain B, Crystal Structure Of Era Lbd In Complex With Ru100132
Length = 247
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 7 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 66
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 67 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 124
Query: 189 QVKHSGS 195
+ + S
Sbjct: 125 MLLATSS 131
>pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 12 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 71
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 72 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 129
Query: 189 QVKHSGS 195
+ + S
Sbjct: 130 MLLATSS 136
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 9 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 68
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 69 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 126
Query: 189 QVKHSGS 195
+ + S
Sbjct: 127 MLLATSS 133
>pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 13 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 72
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 73 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 130
Query: 189 QVKHSGS 195
+ + S
Sbjct: 131 MLLATSS 137
>pdb|2QXS|A Chain A, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
pdb|2QXS|B Chain B, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
Length = 258
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 13 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 72
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 73 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 130
Query: 189 QVKHSGS 195
+ + S
Sbjct: 131 MLLATSS 137
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 5 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 64
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 65 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 122
Query: 189 QVKHSGS 195
+ + S
Sbjct: 123 MLLATSS 129
>pdb|2IOG|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 11f
Length = 246
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 1 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 60
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 61 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 118
Query: 189 QVKHSGS 195
+ + S
Sbjct: 119 MLLATSS 125
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 6 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 65
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 66 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 123
Query: 189 QVKHSGS 195
+ + S
Sbjct: 124 MLLATSS 130
>pdb|1SJ0|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With The Antagonist Ligand 4-d
pdb|1XP1|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 15
pdb|1XP6|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 16
pdb|1XP9|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 18
pdb|1XPC|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 19
pdb|1YIM|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 4
pdb|1YIN|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 3f
Length = 248
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 3 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 62
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 63 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 120
Query: 189 QVKHSGS 195
+ + S
Sbjct: 121 MLLATSS 127
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +IGWAK+IPGF +LSL DQ+RLL+S W
Sbjct: 24 PNVLVSRPSMPFTEASMMM--SLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCW 81
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 82 MEVLMVGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 131
>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
Complex With Lxxll Motif From Ncoa5
pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
Lbd In Complex With Lxxll Motif From Ncoa5
Length = 255
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +IGWAK+IPGF +LSL DQ+RLL+S W
Sbjct: 24 PNVLVSRPSMPFTEASMMM--SLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCW 81
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 82 MEVLMVGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 131
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 100 PT-LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158
PT + +NSL L +RELV +I WAK +PG+TDLSL+DQ+ L++ W E+L L A+RS+
Sbjct: 32 PTKVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSI 91
Query: 159 PHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
H + FA DLVLD +EI++QV
Sbjct: 92 EHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQV 123
>pdb|3OS8|A Chain A, Estrogen Receptor
pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 14 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 73
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+ +DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 74 DLTRHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKXVEGMVEIFDM 132
Query: 190 VKHSGS 195
+ + S
Sbjct: 133 LLATSS 138
>pdb|1NDE|A Chain A, Estrogen Receptor Beta With Selective Triazine Modulator
Length = 255
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 32 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 89
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 90 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 139
>pdb|2I0G|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0G|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2JJ3|A Chain A, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2JJ3|B Chain B, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2Z4B|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2Z4B|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
Length = 257
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 30 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 87
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 88 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 137
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 24 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 81
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 82 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 131
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 16 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 73
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 74 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 123
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 16 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 73
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 74 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 123
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 18 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 75
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 76 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 125
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 19 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 76
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 77 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 126
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 44 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 101
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 102 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 151
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 18 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 75
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 76 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 125
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 18 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 75
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 76 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 125
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 19 PHVLISRPSAPFTEASMMM--SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 76
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQVKHSGS 195
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ + + S
Sbjct: 77 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDMLLATTS 126
>pdb|3OS8|C Chain C, Estrogen Receptor
pdb|3OS8|D Chain D, Estrogen Receptor
pdb|3OS9|A Chain A, Estrogen Receptor
pdb|3OS9|B Chain B, Estrogen Receptor
pdb|3OS9|C Chain C, Estrogen Receptor
pdb|3OS9|D Chain D, Estrogen Receptor
pdb|3OSA|A Chain A, Estrogen Receptor
pdb|3OSA|B Chain B, Estrogen Receptor
pdb|3OSA|C Chain C, Estrogen Receptor
pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 14 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 73
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+ +DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + C G EI+
Sbjct: 74 DLTRHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGK-CVEGMVEIFD 131
Query: 189 QVKHSGS 195
+ + S
Sbjct: 132 MLLATSS 138
>pdb|1YY4|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YY4|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YYE|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
pdb|1YYE|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
Length = 268
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 6/107 (5%)
Query: 86 PEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
P +L R P ++ ++ + SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W
Sbjct: 16 PHVLISRPSAPFTEASM--MMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCW 73
Query: 146 AEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQQV 190
E+L + + +RS+ H GK+ FA DLVLD R +C G EI+ +
Sbjct: 74 MEVLMMGLMWRSIDH-PGKLIFAPDLVLD-RDEGKCVEGILEIFDML 118
>pdb|1X7E|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7E|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7R|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Genistein
Length = 245
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 5 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 64
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC--GFSEIYQ 188
DL+L+DQ+ LL+ W EIL + + +RS+ H K+ FA +L+LD Q + C G EI+
Sbjct: 65 DLTLHDQVHLLECAWLEILMIGLVWRSMEHPV-KLLFAPNLLLDRNQGK-CVEGMVEIFD 122
Query: 189 QVKHSGS 195
+ + S
Sbjct: 123 MLLATSS 129
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 7 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 66
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQQVK 191
Q+ L+Q +W ++ + +RS H +G+ + FA DL+L+E++ +E F + +Q +
Sbjct: 67 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQ 126
Query: 192 HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
L +EE L ++ L+ + E ++ + R + G RQ G +
Sbjct: 127 EFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSS 186
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 10 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 69
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQQVK 191
Q+ L+Q +W ++ + +RS H +G+ + FA DL+L+E++ +E F + +Q +
Sbjct: 70 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQ 129
Query: 192 HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
L +EE L ++ L+ + E ++ + R + G RQ G +
Sbjct: 130 EFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSS 189
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 12 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 71
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQQVK 191
Q+ L+Q +W ++ + +RS H +G+ + FA DL+L+E++ +E F + +Q +
Sbjct: 72 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQ 131
Query: 192 HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
L +EE L ++ L+ + E ++ + R + G RQ G +
Sbjct: 132 EFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSS 191
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 17 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 76
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQQVK 191
Q+ L+Q +W ++ + +RS H +G+ + FA DL+L+E++ +E F + +Q +
Sbjct: 77 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQ 136
Query: 192 HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
L +EE L ++ L+ + E ++ + R + G RQ G +
Sbjct: 137 EFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSS 196
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 14 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 73
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQQVK 191
Q+ L+Q +W ++ + +RS H +G+ + FA DL+L+E++ +E F + +Q +
Sbjct: 74 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQ 133
Query: 192 HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
L +EE L ++ L+ + E ++ + R + G RQ G +
Sbjct: 134 EFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSS 193
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 13 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 72
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQQVK 191
Q+ L+Q +W ++ + +RS H +G+ + FA DL+L+E++ +E F + +Q +
Sbjct: 73 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQ 132
Query: 192 HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
L +EE L ++ L+ + E ++ + R + G RQ G +
Sbjct: 133 EFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSS 192
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 15 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 74
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQQVK 191
Q+ L+Q +W ++ + +RS H +G+ + FA DL+L+E++ +E F + +Q +
Sbjct: 75 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQ 134
Query: 192 HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
L +EE L ++ L+ + E ++ + R + G RQ G +
Sbjct: 135 EFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSS 194
>pdb|4FNE|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Doc Complex
pdb|4FN9|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
pdb|4FN9|B Chain B, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
Length = 254
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L EPE++ + Q D T ++SL+ L +++LV ++ WAK +PGF +L L+D
Sbjct: 8 LISILQAIEPEVVYAGYDNTQPDTTNYLLSSLNRLAEKQLVSVVKWAKALPGFRNLHLDD 67
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI---YQQVKH 192
QM L+Q +W ++ + +RS H G+ + FA DL+ +E++ ++ ++ QQ+
Sbjct: 68 QMTLIQYSWMGLMAFAMGWRSYKHTNGQMLYFAPDLIFNEQRMQQSAMYDLCQGMQQISQ 127
Query: 193 SGSLDGIKEEELPRRLCL 210
+ +EE LC+
Sbjct: 128 EFVRLQVTQEEF---LCM 142
>pdb|2Q1H|A Chain A, Ancestral Corticoid Receptor In Complex With Aldosterone
pdb|2Q1V|A Chain A, Ancestral Corticoid Receptor In Complex With Cortisol
Length = 250
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
+LEA+ EPE++ + Q D T ++SL+ L +++V ++ WAK +PGF +L L+D
Sbjct: 7 ILEAI---EPEVVYAGYDNSQPDTTNYLLSSLNRLAGKQMVSVVKWAKALPGFRNLHLDD 63
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKH 192
QM L+Q +W ++ ++ +RS H G+ + FA DL+ +E + ++ ++ Q ++
Sbjct: 64 QMTLIQYSWMSLMAFSLGWRSYKHTNGQMLYFAPDLIFNEERMQQSAMYDLCQGMRQ 120
>pdb|2Q3Y|A Chain A, Ancestral Corticiod Receptor In Complex With Doc
Length = 249
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
+LEA+ EPE++ + Q D T ++SL+ L +++V ++ WAK +PGF +L L+D
Sbjct: 7 ILEAI---EPEVVYAGYDNSQPDTTNYLLSSLNRLAGKQMVSVVKWAKALPGFRNLHLDD 63
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKH 192
QM L+Q +W ++ ++ +RS H G+ + FA DL+ +E + ++ ++ Q ++
Sbjct: 64 QMTLIQYSWMSLMAFSLGWRSYKHTNGQMLYFAPDLIFNEERMQQSAMYDLCQGMRQ 120
>pdb|3RY9|A Chain A, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
pdb|3RY9|B Chain B, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
Length = 250
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
M+ L EP+++ ++ D T + ++SL+ L R+++ + WAK +PGF +L L+D
Sbjct: 4 MISILEAIEPDVIYAGYDSTLPDTTNRLLSSLNRLGGRQMISAVKWAKALPGFRNLHLDD 63
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGS 195
QM LLQ +W ++ ++ +RS H G + FA DL+ +E + ++ E+ + + H S
Sbjct: 64 QMTLLQYSWMSLMAFSLGWRSYQHTNGNMLYFAPDLIFNEERMQQSSMYELCKGM-HKIS 122
Query: 196 LDGIK-----EEELPRRLCLVCGDV 215
L+ ++ EE L ++ L+ V
Sbjct: 123 LEFVRLQVSYEEYLCMKVLLLLSTV 147
>pdb|3H52|A Chain A, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|B Chain B, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|C Chain C, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|D Chain D, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
Length = 254
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L + EPE+L ++ D T + + +L+ L R+++ + WAK IPGF +L L+D
Sbjct: 9 LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDD 68
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDERQARECGFSEIYQQVKH 192
QM LLQ +W ++ + +RS + + FA DL+++E++ ++Y Q KH
Sbjct: 69 QMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQR---MTLPDMYDQCKH 122
>pdb|3CLD|A Chain A, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3CLD|B Chain B, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3K23|A Chain A, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|B Chain B, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|C Chain C, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K22|A Chain A, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
pdb|3K22|B Chain B, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
Length = 259
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++P L ++ L + EPE+L ++ D T + + +L+ L R+++ + WAK IP
Sbjct: 6 TLPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIP 64
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDERQARECGFSEI 186
GF +L L+DQM LLQ +W ++ + +RS + + FA DL+++E++ G +
Sbjct: 65 GFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPG---M 121
Query: 187 YQQVKH 192
Y Q KH
Sbjct: 122 YDQCKH 127
>pdb|1NHZ|A Chain A, Crystal Structure Of The Antagonist Form Of Glucocorticoid
Receptor
pdb|1P93|A Chain A, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|B Chain B, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|C Chain C, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|D Chain D, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
Length = 280
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++P L ++ L + EPE+L ++ D T + + +L+ L R+++ + WAK IP
Sbjct: 27 TLPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIP 85
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDERQARECGFSEI 186
GF +L L+DQM LLQ +W ++ + +RS + + FA DL+++E++ ++
Sbjct: 86 GFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQR---MTLPDM 142
Query: 187 YQQVKH 192
Y Q KH
Sbjct: 143 YDQCKH 148
>pdb|3BQD|A Chain A, Doubling The Size Of The Glucocorticoid Receptor Ligand
Binding Pocket By Deacylcortivazol
Length = 255
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
S+P L ++ L + EPE+L ++ D T + + +L+ L R+++ + WAK IP
Sbjct: 2 SLPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIP 60
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDE-RQARECGFSE 185
GF +L L+DQM LLQ +W ++ + +RS + + FA DL+++E R C
Sbjct: 61 GFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPC---- 116
Query: 186 IYQQVKH 192
+Y Q KH
Sbjct: 117 MYDQCKH 123
>pdb|3E7C|A Chain A, Glucocorticoid Receptor Lbd Bound To Gsk866
pdb|3E7C|B Chain B, Glucocorticoid Receptor Lbd Bound To Gsk866
Length = 257
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++P L ++ L + EPE+L ++ D T + + +L+ L R+++ + WAK IP
Sbjct: 4 TLPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIP 62
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDERQARECGFSEI 186
GF +L L+DQM LLQ +W ++ + +RS + + FA DL+++E++ G +
Sbjct: 63 GFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPG---M 119
Query: 187 YQQVKH 192
Y Q KH
Sbjct: 120 YDQCKH 125
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++P L ++ L + EPE+L ++ D + + +L+ L R+++ + WAK IP
Sbjct: 8 ALPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIP 66
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDE-RQARECGFSE 185
GF +L L+DQM LLQ +W ++ + +RS +G + FA DL+++E R C
Sbjct: 67 GFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQASGNLLCFAPDLIINEQRMTLPC---- 122
Query: 186 IYQQVKH 192
+Y Q KH
Sbjct: 123 MYDQCKH 129
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++P L ++ L + EPE+L ++ D + + +L+ L R+++ + WAK IP
Sbjct: 8 ALPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIP 66
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDE-RQARECGFSE 185
GF +L L+DQM LLQ +W ++ + +RS +G + FA DL+++E R C
Sbjct: 67 GFRNLHLDDQMTLLQYSWMSLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPC---- 122
Query: 186 IYQQVKH 192
+Y Q KH
Sbjct: 123 MYDQCKH 129
>pdb|3MNP|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, V708a,
E711g) Mutations At 1.50a
Length = 261
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++P L ++ L + EPE+L ++ D + + +L+ L R+++ + WAK IP
Sbjct: 8 ALPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIP 66
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDE-RQARECGFSE 185
GF +L L+DQM LLQ +W ++ + +RS +G + FA DL+++E R C
Sbjct: 67 GFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPC---- 122
Query: 186 IYQQVKH 192
+Y Q KH
Sbjct: 123 MYDQCKH 129
>pdb|1M2Z|A Chain A, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
pdb|1M2Z|D Chain D, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
Length = 257
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++P L ++ L + EPE+L ++ D T + + +L+ L R+++ + WAK IP
Sbjct: 4 TLPQLTPT-LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIP 62
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDE-RQARECGFSE 185
GF +L L+DQM LLQ +W ++ + +RS + + FA DL+++E R C
Sbjct: 63 GFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPC---- 118
Query: 186 IYQQVKH 192
+Y Q KH
Sbjct: 119 MYDQCKH 125
>pdb|3VHV|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Non-Steroidal Antagonist
Length = 260
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 21 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 80
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK-- 200
+W +L+ +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 81 SWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVRLQ 139
Query: 201 ---EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257
EE ++ L+ + G+ S A + RT + + C NS
Sbjct: 140 LTFEEYTIMKVLLLLSTIPKD---GLKSQAAFEEM--RTNYIKELRKMVTKCPN----NS 190
Query: 258 DVKLDEFSSLKKFRNSILSSLGD----CIYVLR 286
F L K +S+ + D C Y R
Sbjct: 191 GQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFR 223
>pdb|3VHU|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Spironolactone
Length = 294
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 55 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 114
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK 200
+W +L+ +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 115 SWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVR 171
>pdb|2AA6|A Chain A, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AA6|B Chain B, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AAX|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AAX|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AB2|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
pdb|2AB2|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
Length = 275
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 36 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 95
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK 200
+W +L+ +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 96 SWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVR 152
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L + EPE+L ++ D + + +++L+ L R++V + WAK +PGF +L L+D
Sbjct: 6 LISLLEVIEPEVLYSGYDSTLPDTSTRLMSTLNRLGGRQVVSAVKWAKALPGFRNLHLDD 65
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDERQAR 179
QM LLQ +W ++ ++ +RS G + FA DLV++E + +
Sbjct: 66 QMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLVINEERMQ 109
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L + EPE+L ++ D + + +++L+ L R++V + WAK +PGF +L L+D
Sbjct: 4 LISLLEVIEPEVLYSGYDSTLPDTSTRLMSTLNRLGGRQVVSAVKWAKALPGFRNLHLDD 63
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGKIR-FASDLVLDERQAR 179
QM LLQ +W ++ ++ +RS G + FA DLV++E + +
Sbjct: 64 QMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLVINEERMQ 107
>pdb|2OAX|A Chain A, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|B Chain B, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|C Chain C, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|D Chain D, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|E Chain E, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|F Chain F, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
Length = 256
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 17 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 76
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK 200
+W +L+ +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 77 SWMCLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVR 133
>pdb|1Y9R|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1Y9R|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
Length = 255
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 16 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 75
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK 200
+W +L+ +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 76 SWMCLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVR 132
>pdb|2A3I|A Chain A, Structural And Biochemical Mechanisms For The Specificity
Of Hormone Binding And Coactivator Assembly By
Mineralocorticoid Receptor
Length = 253
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 20/213 (9%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 14 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 73
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK-- 200
+W + + +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 74 SWMSLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVRLQ 132
Query: 201 ---EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257
EE ++ L+ + G+ S A + RT + + C NS
Sbjct: 133 LTFEEYTIMKVLLLLSTIPKD---GLKSQAAFEEM--RTNYIKELRKMVTKCPN----NS 183
Query: 258 DVKLDEFSSLKKFRNSILSSLGD----CIYVLR 286
F L K +S+ + D C Y R
Sbjct: 184 GQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFR 216
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 65 PNKSIPSLEENKMLEALLLCEP--EMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGW 122
PN +P +K+LEA L+ +P E + + ++DP ++++ DR+LV ++ W
Sbjct: 25 PNDDMPV---DKILEAELISDPKVEQVVPFEQVNENDP----VSNICKAADRQLVTLVEW 77
Query: 123 AKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECG 182
AK+IP F+ L L DQ+ LL++ W E+L + ++RS+ I AS L + A + G
Sbjct: 78 AKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSI-DVKDSILLASGLHVHRHSAHQAG 136
Query: 183 FSEIYQQV 190
I+ +V
Sbjct: 137 VGPIFDRV 144
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 15 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 74
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 75 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 124
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 10 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 69
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 70 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 120
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 10 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 69
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 70 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 120
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 15 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 74
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 75 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 124
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 4 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 63
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 64 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 113
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 11 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 70
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 71 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 121
>pdb|2AA2|A Chain A, Mineralocorticoid Receptor With Bound Aldosterone
pdb|2AA5|A Chain A, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA5|B Chain B, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA7|A Chain A, Mineralocorticoid Receptor With Bound Deoxycorticosterone
Length = 275
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 36 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 95
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK 200
+W + + +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 96 SWMSLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVR 152
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 17 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 76
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 77 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 127
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 11 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 70
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 71 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 121
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 23 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 82
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 83 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 133
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 4 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 63
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 64 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 113
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 5 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 64
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 65 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 115
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 5 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 64
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 65 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 115
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 5 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 64
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 65 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 115
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 4 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 63
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 64 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 113
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 4 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 63
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 64 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 113
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 4 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 63
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 64 MAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 113
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 20 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 79
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 80 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 130
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D +SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 4 FLNVLEAIEPGVVCAGHDNNQPDSFAALHSSLNELGERQLVHVVKWAKALPGFRNLHVDD 63
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q +W ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 64 QMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 114
>pdb|2ABI|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
Length = 256
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 84 CEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
EPE++ ++ + D +++L+ L ++++ ++ WAK +PGF +L L DQ+ L+Q
Sbjct: 17 IEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQY 76
Query: 144 TWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKHSGSLDGIK 200
+W + + +++RS H + + FA DLV +E + + E+ Q + H SL ++
Sbjct: 77 SWMCLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGM-HQISLQFVR 133
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLN 135
++LEA L EP+ + S P SD + DR+L +I WAK IP FT+L +
Sbjct: 45 RILEAELRVEPKNEDIDSRDPVSD--------ICQAADRQLYQLIEWAKHIPHFTELPVE 96
Query: 136 DQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
DQ+ LL+S W E+L ++RS+ G I A+ LV+ A + G I+ +V
Sbjct: 97 DQVILLKSGWNELLIAGFSHRSMSVKDG-IMLATGLVVHRNCAHQAGVGAIFDRV 150
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 78 LEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++DQ
Sbjct: 3 LNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQ 62
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
M ++Q + ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 63 MAVIQYSLMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 112
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|B Chain B, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|E Chain E, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|F Chain F, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
Length = 84
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGG 48
+Y CPA+N C I+K RRK+CQACR +KC GM+K G+R DR RGG
Sbjct: 40 DYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDR-RGG 84
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
R C VC D ASG+HYGV SCE CKAFFKR+IQ ++ Y
Sbjct: 5 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDY 41
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L ++D
Sbjct: 10 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDD 69
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQ 189
QM ++Q + ++ + +RS + + + FA DLV +E + + S +Y Q
Sbjct: 70 QMAVIQYSLMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK---SRMYSQ 120
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 37 KEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETP 96
+E V+ +R RG RN + + N+ +P ++LEA L EP+ T
Sbjct: 22 REAVQEERQRGKD----RNENEVESTSSANEDMPV---ERILEAELAVEPKTETYVEANM 74
Query: 97 QSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
+P+ + ++ D++L ++ WAK+IP F++L L+DQ+ LL++ W E+L + +
Sbjct: 75 GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS 134
Query: 155 YRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
+RS+ G I A+ L + A G I+ +V
Sbjct: 135 HRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 169
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding
Domain Bound To Its Target Sequence In The Inhibin
Alpha- Subunit Promoter
Length = 102
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK----YRRNP 56
N YTC S C+I+K +RK C CRFQKCL GM E VR DR+RGGR K Y+R+
Sbjct: 35 NKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDR 94
Query: 57 DLLSQQ 62
L Q+
Sbjct: 95 ALKQQK 100
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
LC VCGD SG+HYG+ +CE+CK FFKRT+Q Y
Sbjct: 3 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHY 38
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 76 KMLEALLLCEPEMLT---VRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDL 132
++LEA L EP+ + + E +DP + ++ D++L ++ WAK+IP F+DL
Sbjct: 16 RILEAELAVEPKTESYGDMNMENSTNDP----VTNICHAADKQLFTLVEWAKRIPHFSDL 71
Query: 133 SLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
+L DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 72 TLEDQVILLRAGWNELLIASFSHRSVSVQDG-ILLATGLHVHRSSAHSAGVGSIFDRV 128
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1
Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter
Length = 113
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK----YRRNP 56
N YTC + +C+I+K +RK C CRFQKCL GM E VR DR+RGGR K Y+R+
Sbjct: 43 NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDR 102
Query: 57 DLLSQQ 62
L Q+
Sbjct: 103 ALKQQK 108
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
LC VCGD SG+HYG+ +CE+CK FFKRT+Q
Sbjct: 11 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQ 41
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
K+LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 12 KILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 71
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 72 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 127
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
K+LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 10 KILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 69
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 70 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 125
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
K+LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 10 KILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 69
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 70 LDDQVILLRAGWNELLIASASHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 125
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLN 135
++LEA L +P++ T Q DP + ++ D++L ++ WAK+IP FT+L L
Sbjct: 10 QILEAELAVDPKIDTYIDA--QKDP----VTNICQAADKQLFTLVEWAKRIPHFTELPLE 63
Query: 136 DQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
DQ+ LL++ W E+L ++RS+ G I A+ L + A + G I+ +V
Sbjct: 64 DQVILLRAGWNELLIAGFSHRSIMAKDG-ILLATGLHVHRSSAHQAGVGTIFDRV 117
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 14 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 73
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 74 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 129
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 16 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 75
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 76 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 131
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 14 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 73
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 74 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 129
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLN 135
K+ EA + EP+ + E P +DP + ++ D++LV ++ WAK+IP F+DL ++
Sbjct: 6 KIQEAEMAVEPKDGNM-VEQP-NDP----VTNICQAADKQLVTLVEWAKRIPHFSDLPID 59
Query: 136 DQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
DQ+ LL++ W E+L ++RS+ G I AS L + A + G I+ +V
Sbjct: 60 DQVILLRAGWNELLIAAFSHRSIDVKDG-ILLASGLHVHRSSAHQAGVGTIFDRV 113
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 30/38 (78%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245
LC VCGDVASGFHYGV +CE CK FF+R+IQ Y++
Sbjct: 9 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKR 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 1 NIEYT-CPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45
NI+Y C + +C I + R CQ CRF+KCL GM ++ VR R+
Sbjct: 41 NIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRI 86
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 11 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 70
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 71 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 126
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 8 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 67
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 68 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 123
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 10 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 69
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 70 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 125
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 6 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 65
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 66 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 121
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 12 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 71
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 72 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 127
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 7 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 66
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 67 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 122
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 8 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 67
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 68 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 123
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76 KMLEALLLCEPEMLTVRSETPQSDPTLQT--INSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L
Sbjct: 7 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 66
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L+DQ+ LL++ W E+L + ++RS+ G I A+ L + A G I+ +V
Sbjct: 67 LDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGVGAIFDRV 122
>pdb|1HCP|A Chain A, Dna Recognition By The Oestrogen Receptor: From Solution
To The Crystal
Length = 76
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
R C VC D ASG+HYGV SCE CKAFFKR+IQ ++ Y
Sbjct: 5 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDY 41
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEG 39
+Y CPA+N C I+K RRK+CQACR +KC GM+K G
Sbjct: 40 DYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGG 76
>pdb|4AA6|E Chain E, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
R C VC D ASG+HYGV SCE CKAFFKR+IQ ++ Y
Sbjct: 2 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDY 38
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLK 37
+Y CPA+N C I+K RRK+CQACR +KC GM+K
Sbjct: 37 DYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 71
>pdb|4AA6|A Chain A, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|B Chain B, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|F Chain F, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
R C VC D ASG+HYGV SCE CKAFFKR+IQ ++ Y
Sbjct: 2 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDY 38
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLK 37
+Y CPA+N C I+K RRK+CQACR +KC GM+K
Sbjct: 37 DYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 71
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQV 239
C VCGD ASGFHYGV +CE CK FF+RTI++
Sbjct: 53 CRVCGDKASGFHYGVHACEGCKGFFRRTIRL 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 49/187 (26%)
Query: 11 DCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS-------QQW 63
+C I+K+ R CQ CRFQKCL GM + R GR LL+ Q
Sbjct: 93 NCRIHKKSRNKCQYCRFQKCLAVGMSHNAI-----RFGRMPQAEKEKLLAEISSDIDQLN 147
Query: 64 PPNKSIPSLEE---NKMLEALLLCEPE---MLTVRSETPQSDPTLQTINSLSDLYDR--- 114
P + + +L + + +++ L + + +LT ++ T +S + +NSL D+
Sbjct: 148 PESADLRALAKHLYDSYIKSFPLTKAKARAILTGKT-TDKSPFVIYDMNSLMMGEDKIKF 206
Query: 115 -----------ELVC----------------IIGWAKQIPGFTDLSLNDQMRLLQSTWAE 147
E+ I +AK IPGF +L LNDQ+ LL+ E
Sbjct: 207 KHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHE 266
Query: 148 ILTLTIA 154
I+ +A
Sbjct: 267 IIYTMLA 273
>pdb|1FCY|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The RarbetaGAMMA-
Selective Retinoid Cd564
Length = 236
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ I+ +AK++PGFT LS+ DQ+ LL++ +IL L I R P +
Sbjct: 47 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTM 105
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V +G L ++ E L +CL+CGD
Sbjct: 106 TFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGD 159
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNP 56
+ +Y C A+ DC ++KRRR CQ CRFQKCL GM+KE VR D ++G R + P
Sbjct: 34 SAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 89
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVKLDE 263
C VCGD AS HYGV +CE CK FFKRT+Q + Y + LAN D +D+
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKY--------ICLANKDCPVDK 49
>pdb|1OVL|A Chain A, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|D Chain D, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSE 94
M+KE VR D ++G R R S Q P S P + ++ A + P M ++
Sbjct: 1 MVKEVVRTDSLKGRRG--RLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYS 58
Query: 95 TPQSDPTLQT-------INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAE 147
Q++P Q I DL + I GWA++IPGF DL DQ L +S + E
Sbjct: 59 RFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLE 118
Query: 148 ILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSE 185
+ L +AYRS P GK+ F + +VL Q GF E
Sbjct: 119 LFVLRLAYRSNP-VEGKLIFCNGVVLHRLQCVR-GFGE 154
>pdb|1FCX|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Bms184394
pdb|1FCZ|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Panagonist Retinoid
Bms181156
pdb|1FD0|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Sr11254
Length = 235
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ I+ +AK++PGFT LS+ DQ+ LL++ +IL L I R P +
Sbjct: 46 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTM 104
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V +G L ++ E L +CL+CGD
Sbjct: 105 TFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGD 158
>pdb|1EXA|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Active
R-Enantiomer Bms270394.
pdb|1EXX|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Inactive
S-Enantiomer Bms270395
Length = 246
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ I+ +AK++PGFT LS+ DQ+ LL++ +IL L I R P +
Sbjct: 51 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTM 109
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V +G L ++ E L +CL+CGD
Sbjct: 110 TFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGD 163
>pdb|2LBD|A Chain A, Ligand-Binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To All-Trans Retinoic Acid
pdb|3LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To 9-cis Retinoic Acid
pdb|4LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To The Synthetic Agonist Bms961
Length = 267
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ I+ +AK++PGFT LS+ DQ+ LL++ +IL L I R P +
Sbjct: 72 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTM 130
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V +G L ++ E L +CL+CGD
Sbjct: 131 TFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGD 184
>pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 28/204 (13%)
Query: 114 RELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVL 173
++L ++ WAK +P FT L L DQ++LL++ W E+L ++RS+ I A+ L +
Sbjct: 48 KQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSM-QAQDAIVLATGLTV 106
Query: 174 DERQARECGFSEIYQQVKHSGSLDGIKEEELP-------RRLCLVCGDVASGFHYGVASC 226
++ A G IY +V S ++ +KE ++ R + L DV G+ S
Sbjct: 107 NKSTAHAVGVGNIYDRVL-SELVNKMKEMKMDKTELGCLRAIILYNPDV-----RGIKSV 160
Query: 227 EACKAFFKRTIQVYSGYRQTGACGTLVLANSDVKLDEFSSLKKFRNSILSSLG-DCIYVL 285
+ + ++ V Y +T + F+ L R L S+G C+ L
Sbjct: 161 QEVEMLREKIYGVLEEYTRTTHPN---------EPGRFAKL-LLRLPALRSIGLKCLEHL 210
Query: 286 RFWSTVHKDGKVLMNKLFVEMLEA 309
F+ + G V ++ +EMLE
Sbjct: 211 FFFKLI---GDVPIDTFLMEMLEG 231
>pdb|1OVL|B Chain B, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|C Chain C, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|E Chain E, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|F Chain F, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 73/158 (46%), Gaps = 11/158 (6%)
Query: 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSE 94
M+KE VR D ++G R R S Q P S P + ++ A + P M ++
Sbjct: 1 MVKEVVRTDSLKGRRG--RLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYS 58
Query: 95 TPQSDPTLQT-------INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAE 147
Q++P Q I DL I GWA++IPGF DL DQ L +S + E
Sbjct: 59 RFQANPDYQMSGDDTQHIQQFYDLLTGSXEIIRGWAEKIPGFADLPKADQDLLFESAFLE 118
Query: 148 ILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSE 185
+ L +AYRS P GK+ F + +VL Q GF E
Sbjct: 119 LFVLRLAYRSNP-VEGKLIFCNGVVLHRLQCVR-GFGE 154
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 27/39 (69%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
P R CLVC D ASG HYGV +CE CKAFFKR ++ Y
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNY 41
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C C I+K RRK C ACR++KCL+ GM
Sbjct: 41 YLCKYEGKCIIDKIRRKNCPACRYRKCLQAGM 72
>pdb|2ENV|A Chain A, Solution Sturcture Of The C4-Type Zinc Finger Domain From
Human Peroxisome Proliferator-Activated Receptor Delta
Length = 88
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQV 239
C VCGD ASGFHYGV +CE CK FF+RTI++
Sbjct: 10 CRVCGDKASGFHYGVHACEGCKGFFRRTIRM 40
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 11 DCEINKRRRKACQACRFQKCLRKGMLKEGVRLD 43
C+I K+ R CQ CRFQKCL GM +R
Sbjct: 50 SCKIQKKNRNKCQYCRFQKCLALGMSHNAIRFG 82
>pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGK 164
+ DL L I WA++IPGF +LS DQ LL+S + E+ L +AYRS P GK
Sbjct: 78 VQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKP-GEGK 136
Query: 165 IRFASDLVLDERQ-ARECG 182
+ F S LVL Q AR G
Sbjct: 137 LIFCSGLVLHRLQCARGFG 155
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 113 DRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLV 172
D++L ++ WAK+IP F+ L L+DQ+ LL++ W E+L + ++RS+ G I A+ L
Sbjct: 46 DKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDG-ILLATGLH 104
Query: 173 LDERQARECGFSEIYQQV 190
+ A G I+ +V
Sbjct: 105 VHRNSAHSAGVGAIFDRV 122
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 113 DRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLV 172
D++L ++ WAK+IP F+ L L+DQ+ LL++ W E+L + ++RS+ G I A+ L
Sbjct: 47 DKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDG-ILLATGLH 105
Query: 173 LDERQARECGFSEIYQQV 190
+ A G I+ +V
Sbjct: 106 VHRNSAHSAGVGAIFDRV 123
>pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGK 164
+ DL L I WA++IPGF +LS DQ LL+S + E+ L +AYRS P GK
Sbjct: 54 VQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPG-EGK 112
Query: 165 IRFASDLVLDERQ-ARECG 182
+ F S LVL Q AR G
Sbjct: 113 LIFCSGLVLHRLQCARGFG 131
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGK 164
+ DL L I WA++IPGF +LS DQ LL+S + E+ L +AYRS P GK
Sbjct: 69 VQQFYDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSKPG-EGK 127
Query: 165 IRFASDLVLDERQ-ARECG 182
+ F S LVL Q AR G
Sbjct: 128 LIFCSGLVLHRLQCARGFG 146
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ LC +CGD ASG HYGV SCE CK FFKRT++
Sbjct: 9 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVR 42
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
++ Y C + +C I+KR+R CQ CR+QKCL GM +E V+ +R
Sbjct: 44 DLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEER 87
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 99
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ +C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 1 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR 35
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG
Sbjct: 37 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 83
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ LC +CGD ASG HYGV SCE CK FFKRT++
Sbjct: 7 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVR 40
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
++ Y C + +C I+KR+R CQ CR+QKCL GM +E V+ +R
Sbjct: 42 DLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEER 85
>pdb|3A9E|B Chain B, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 269
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ + +AKQ+PGFT L++ DQ+ LL++ +IL L I R P +
Sbjct: 74 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE-QDTM 132
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V + L ++ E L +CL+CGD
Sbjct: 133 TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGD 186
>pdb|4DQM|A Chain A, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
pdb|4DQM|C Chain C, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
Length = 234
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ + +AKQ+PGFT L++ DQ+ LL++ +IL L I R P +
Sbjct: 45 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE-QDTM 103
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V + L ++ E L +CL+CGD
Sbjct: 104 TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGD 157
>pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 235
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ + +AKQ+PGFT L++ DQ+ LL++ +IL L I R P +
Sbjct: 45 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE-QDTM 103
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V + L ++ E L +CL+CGD
Sbjct: 104 TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGD 157
>pdb|3KMR|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With An Agonist Ligand (Am580) And A Coactivator
Fragment
pdb|3KMZ|B Chain B, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
pdb|3KMZ|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
Length = 266
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ + +AKQ+PGFT L++ DQ+ LL++ +IL L I R P +
Sbjct: 71 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE-QDTM 129
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V + L ++ E L +CL+CGD
Sbjct: 130 TFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGD 183
>pdb|1XAP|A Chain A, Structure Of The Ligand Binding Domain Of The Retinoic
Acid Receptor Beta
pdb|4DM6|A Chain A, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM6|B Chain B, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM8|A Chain A, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
pdb|4DM8|B Chain B, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
Length = 267
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ I+ +AK++PGFT L++ DQ+ LL++ +IL L I R P +
Sbjct: 72 DKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPE-QDTM 130
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V + L ++ E L +CL+CGD
Sbjct: 131 TFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 184
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
pdb|4HN6|B Chain B, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
Length = 114
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 201 EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
+ P +LCLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 21 QSNAPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 67
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C N C I+K RRK C ACR++KCL+ GM
Sbjct: 62 NYLCAGDNRCIIDKIRRKNCPACRYRKCLQAGM 94
>pdb|1XDK|B Chain B, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|F Chain F, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 303
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI 165
+ S+L + ++ I+ +AK++PGFT L++ DQ+ LL++ +IL L I R P +
Sbjct: 74 DKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPE-QDTM 132
Query: 166 RFASDLVLDERQARECGFSEIYQQV-KHSGSLDGIK----EEELPRRLCLVCGD 214
F+ L L+ Q GF + V + L ++ E L +CL+CGD
Sbjct: 133 TFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 186
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 86
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 3/39 (7%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQ---VYSGYR 244
C VC D +SG+HYGV++CE CK FF+R+IQ VY+ +R
Sbjct: 7 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHR 45
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 26/44 (59%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
N+ YTC +C INK R CQ CR QKC GM KE VR DR
Sbjct: 38 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDR 81
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ +C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR 37
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG
Sbjct: 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 85
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
P+++CL+CGD ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 1 PQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAG 43
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRL 42
Y C NDC ++K RRK C ACR +KC + GM+ G +
Sbjct: 39 YLCAGRNDCIVDKIRRKNCPACRLRKCCQAGMVLGGRKF 77
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
Length = 82
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ +C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR 37
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R
Sbjct: 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 82
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex
pdb|4HN5|B Chain B, Gr Dna Binding Domain - Tslp Ngre Complex
Length = 117
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
P +LCLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 28 PPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 70
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C NDC I+K RRK C ACR++KCL+ GM
Sbjct: 65 NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM 97
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ +C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR 35
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47
++ YTC + DC I+KR+R CQ CR+QK L GM +E V+ +R RG
Sbjct: 37 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKALAMGMKREAVQEERQRG 83
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid
Receptor- Beta Dna-Binding Domain
Length = 80
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 5/46 (10%)
Query: 204 LPR--RLCLVCGDVASGFHYGVASCEACKAFFKRTIQ---VYSGYR 244
+PR + C VC D +SG+HYGV++CE CK FF+R+IQ +Y+ +R
Sbjct: 1 MPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHR 46
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 24/41 (58%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVR 41
N+ YTC +C INK R CQ CR QKC GM KE VR
Sbjct: 39 NMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVR 79
>pdb|2HAN|B Chain B, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 119
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 194 GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
GS ++EE LCLVCGD ASG+HY +CE CK FF+R++ + Y
Sbjct: 1 GSAPRVQEE-----LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVY 45
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGV 40
Y C CE++ R+ CQ CR +KCL GM E V
Sbjct: 45 YCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECV 81
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 65 PNKSIPSLEENKMLEALLLCEPEMLTVRS------ETPQSDPT----LQTINSLSDLYDR 114
P SIP L +LE LL CEP+ V++ + Q++ + L T + + D+
Sbjct: 13 PRGSIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 67
Query: 115 ELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
L I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 68 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVH 113
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 15/106 (14%)
Query: 65 PNKSIPSLEENKMLEALLLCEPEMLTVRS------ETPQSDPT----LQTINSLSDLYDR 114
P SIP L +LE LL CEP+ V++ + Q++ + L T + + D+
Sbjct: 12 PRGSIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQ 66
Query: 115 ELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
L I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 67 TLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVH 112
>pdb|1R4I|A Chain A, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
pdb|1R4I|B Chain B, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
Length = 105
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVKLDEF 264
P++ CL+CGD ASG HYG +C +CK FFKR + Y L + +D +D+F
Sbjct: 6 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKY--------LCASRNDCTIDKF 57
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
+Y C + NDC I+K RRK C +CR +KC GM
Sbjct: 43 KYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGM 75
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+ +C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 1 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR 35
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGV 40
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V
Sbjct: 37 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 76
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
LC+VCGD A+G+HY +CE CK FF+RTIQ
Sbjct: 5 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQ 35
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
Y+C C I+K R CQ CRF+KC+ GM + V D R ++K
Sbjct: 42 YSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRK 89
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 103
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
LC+VCGD A+G+HY +CE CK FF+RTIQ
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQ 33
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
Y+C C I+K R CQ CRF+KC+ GM + V D R ++K
Sbjct: 40 YSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRK 87
>pdb|1R0N|B Chain B, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
pdb|1R0O|B Chain B, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 109
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243
LCLVCGD ASG+HY +CE CK FF+R++ + Y
Sbjct: 8 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVY 43
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGV 40
Y C CE++ R+ CQ CR +KCL GM E V
Sbjct: 43 YCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECV 79
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1GLU|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 81
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
P R CLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 45
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C NDC I+K RRK C ACR++KCL+ GM
Sbjct: 40 NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM 72
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
P R CLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 45
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C NDC I+K RRK C ACR++KCL+ GM
Sbjct: 40 NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM 72
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 60 SQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRS------ETPQSDPT----LQTINSLS 109
S Q SIP L +LE LL CEP+ V++ + Q++ + L T +
Sbjct: 6 SYQTSSPASIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 60
Query: 110 DLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
+ D+ L I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 61 KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVH 111
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4O|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4R|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
P R CLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 45
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
Y C NDC I+K RRK C ACR++KCL+ GM E + + G Q+
Sbjct: 41 YLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQ 88
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 37/54 (68%)
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158
++SL + ++++ ++ WA+ IP F+ L + DQ+ L++ +W E+L IA+RS+
Sbjct: 44 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSM 97
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRS------ETPQSD----PTLQTINSLSDLYDRELV 117
SIP L +LE LL CEP+ V++ + QS+ L L + D+ L
Sbjct: 2 SIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLF 56
Query: 118 CIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 57 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAH 99
>pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 37/54 (68%)
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158
++SL + ++++ ++ WA+ IP F+ L + DQ+ L++ +W E+L IA+RS+
Sbjct: 43 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSM 96
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 66
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 1 CAICGDRSSGKHYGVYSCEGCKGFFKRTVR 30
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
++ YTC + DC I+KR+R CQ CR+QKCL GM
Sbjct: 32 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGM 66
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRS------ETPQSD----PTLQTINSLSDLYDRELV 117
SIP L +LE LL CEP+ V++ + QS+ L L + D+ L
Sbjct: 7 SIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLF 61
Query: 118 CIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 62 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAH 104
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRS------ETPQSDPT----LQTINSLSDLYDRELV 117
SIP L +LE LL CEP+ V++ + Q++ + L T + + D+ L
Sbjct: 4 SIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLF 58
Query: 118 CIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 59 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVH 101
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRS------ETPQSDPT----LQTINSLSDLYDRELV 117
SIP L +LE LL CEP+ V++ + Q++ + L T + + D+ L
Sbjct: 4 SIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLF 58
Query: 118 CIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 59 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVH 101
>pdb|1YNW|A Chain A, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 110
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
R+C VCGD A+GFH+ +CE CK FF+R+++
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMK 38
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLD 43
+TC A+ DC I K R+ACQACR ++C+ GM+KE + D
Sbjct: 43 FTCAANGDCRITKDNRRACQACRLKRCVDIGMMKEFILTD 82
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
LCLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 40
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C NDC I+K RRK C ACR++KCL+ GM
Sbjct: 35 NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM 67
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
LCLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 40
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C NDC I+K RRK C ACR++KCL+ GM
Sbjct: 35 NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM 67
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
R+C VCGD A+GFH+ +CE CK FF+R+++
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMK 38
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLD 43
+TCP + DC I K R+ CQACR ++C+ GM+KE + D
Sbjct: 43 FTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTD 82
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGK 164
I ++ +L R L + WA+ IP F DL + DQ+ LL+ TW+E+ L A S+P
Sbjct: 39 IENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP 98
Query: 165 IRFASDL 171
+ A+ L
Sbjct: 99 LLAAAGL 105
>pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
LC +CGD A+G HYG +SC+ CK FF+R+++
Sbjct: 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVR 32
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
N Y+C S C ++K +R C+ CR +KC R GM KE V+ +R
Sbjct: 34 NHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER 77
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3G9P|A Chain A, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3FYL|A Chain A, Gr Dna Binding Domain:cgt Complex
pdb|3FYL|B Chain B, Gr Dna Binding Domain:cgt Complex
pdb|3G6P|A Chain A, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6P|B Chain B, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6Q|B Chain B, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6Q|A Chain A, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6R|B Chain B, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6R|A Chain A, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6U|A Chain A, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G6U|B Chain B, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G8U|A Chain A, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8U|B Chain B, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8X|A Chain A, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G8X|B Chain B, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G97|B Chain B, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G97|A Chain A, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G99|A Chain A, Gr Dna Binding Domain:pal Complex-9
pdb|3G99|B Chain B, Gr Dna Binding Domain:pal Complex-9
pdb|3G9I|A Chain A, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9I|B Chain B, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9J|A Chain A, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9J|B Chain B, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9M|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9M|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9O|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-9
pdb|3G9O|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-9
Length = 90
Score = 47.8 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
+CLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 4 MCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 43
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
Y C NDC I+K RRK C ACR++KCL+ GM E + + G Q+
Sbjct: 39 YLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQ 86
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRS------ETPQSDPT----LQTINSLSDLYDRELV 117
SIP L +LE LL CEP+ V++ + Q++ + L T + + D+ L
Sbjct: 111 SIPHL----ILE-LLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLF 165
Query: 118 CIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H
Sbjct: 166 SIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVH 208
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+CLVC D ASG HYGV +C +CK FFKR ++
Sbjct: 4 MCLVCSDEASGCHYGVLTCGSCKVFFKRAVE 34
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
Y C NDC I+K RRK C ACR++KCL+ GM E + + G Q+
Sbjct: 40 YLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQ 87
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
C+VCGD +SG HYG +CE CK+FFKR+++
Sbjct: 10 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVR 39
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVR 41
N+ YTC A+ +C I++ R CQ CR +KCL+ GM +E V+
Sbjct: 41 NLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ 81
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna
Binding Domain From Nmr Data By Relaxation Matrix
Calculations
Length = 71
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
CLVC D ASG HYGV +C +CK FFKR ++ Y G
Sbjct: 1 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAG 39
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGM 35
Y C NDC I+K RRK C ACR++KCL+ GM
Sbjct: 34 NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGM 66
>pdb|2HBH|A Chain A, Crystal Structure Of Vitamin D Nuclear Receptor Ligand
Binding Domain Bound To A Locked Side-Chain Analog Of
Calcitriol And Src-1 Peptide
pdb|2HC4|A Chain A, Crystal Structure Of The Lbd Of Vdr Of Danio Rerio In
Complex With Calcitriol
pdb|2HCD|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Vitamin D Nuclear Receptor In Complex With Gemini And A
Coactivator Peptide
pdb|3DR1|A Chain A, Side-Chain Fluorine Atoms Of Non-Steroidal Vitamin D3
Analogs Stabilize Helix 12 Of Vitamin D Receptor
pdb|3O1D|A Chain A, Structure-Function Study Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097.
pdb|3O1E|A Chain A, Structure-Function Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097
Length = 302
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ EI+ L
Sbjct: 101 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIML 150
>pdb|4FHH|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4FHI|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4G1D|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Y|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Z|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G20|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G21|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G2H|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 300
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ EI+ L
Sbjct: 99 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIML 148
>pdb|3F7D|A Chain A, Sf-1 Lbd Bound By Phosphatidylcholine
Length = 244
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 73 EENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDL 132
EE+++ ++ C E RS+ P + L + D+ + I+ WA++ F +L
Sbjct: 19 EEDQVRARIVGCLQEPAKSRSDQPAP------FSLLXRMADQTFISIVDWARRCMVFKEL 72
Query: 133 SLNDQMRLLQSTWAEILTLTIAYRSLPH 160
+ DQM LLQ++W+E+L L YR + +
Sbjct: 73 EVADQMTLLQNSWSELLVLDHIYRQVQY 100
>pdb|1RJK|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2md And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RK3|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 1,25-Dihydroxyvitamin D3
And A Synthetic Peptide Containing The Nr2 Box Of Drip
205
pdb|1RKG|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2mbisp And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RKH|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2am20r And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|2O4J|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20z And The Nr2 Box Of
Drip 205
pdb|2O4R|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20e And The Nr2 Box Of
Drip 205
Length = 292
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ +DQ+ LL+S+ E++ L
Sbjct: 58 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIML 107
>pdb|1YMT|A Chain A, Mouse Sf-1 Lbd
Length = 246
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 73 EENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDL 132
EE+++ ++ C E RS+ P + L + D+ + I+ WA++ F +L
Sbjct: 21 EEDQVRARIVGCLQEPAKSRSDQPAP------FSLLCRMADQTFISIVDWARRCMVFKEL 74
Query: 133 SLNDQMRLLQSTWAEILTLTIAYRSLPH 160
+ DQM LLQ++W+E+L L YR + +
Sbjct: 75 EVADQMTLLQNSWSELLVLDHIYRQVQY 102
>pdb|2ZL9|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLA|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLC|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZMH|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMI|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMJ|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZXM|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|2ZXN|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|3AFR|A Chain A, Crystal Structure Of
Vdr-Lbd22S-Butyl-1a,24r-Dihydroxyvitamin D3 Complex
pdb|3VJS|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VJT|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VRT|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Mehylidene-19,25,26,27-
Tetranor-1alpha,24-Dihydroxyvitamind3
pdb|3VRU|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-19,24-Dinor- 1alpha,25-Dihydroxy Vitamind3
pdb|3VRV|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-26,27-
Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
pdb|3VRW|A Chain A, Vdr Ligand Binding Domain In Complex With
22s-Butyl-2-Methylidene-26,
27-Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
Length = 271
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ +DQ+ LL+S+ E++ L
Sbjct: 68 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIML 117
>pdb|2ZFX|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr301 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3A2H|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Tei-9647 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3AUN|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr335 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
Length = 265
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ +DQ+ LL+S+ E++ L
Sbjct: 62 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIML 111
>pdb|1YOW|A Chain A, Human Steroidogenic Factor 1 Lbd With Bound Co-Factor
Peptide
Length = 242
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 111 LYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
+ D+ + I+ WA++ F +L + DQM LLQ+ W+E+L YR + H
Sbjct: 49 MADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQH 98
>pdb|3P8X|A Chain A, Synthesis, Structure, And Biological Activity Of Des-Side
Chain Analogues Of 1alpha,25-Dihydroxyvitamin D3 With
Substituents At C-18
Length = 280
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 77 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 126
>pdb|1YP0|A Chain A, Structure Of The Steroidogenic Factor-1 Ligand Binding
Domain Bound To Phospholipid And A Shp Peptide Motif
Length = 239
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 73 EENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDL 132
EE+++ ++ C E RS+ P + L + D+ + I+ WA++ F +L
Sbjct: 15 EEDQVRARIVGCLQEPAKSRSDQPAP------FSLLCRMADQTFISIVDWARRCMVFKEL 68
Query: 133 SLNDQMRLLQSTWAEILTLTIAYRSLPH 160
+ DQM LLQ+ W+E+L L YR + +
Sbjct: 69 EVADQMTLLQNCWSELLVLDHIYRQVQY 96
>pdb|1ZDT|A Chain A, The Crystal Structure Of Human Steroidogenic Factor-1
pdb|1ZDT|B Chain B, The Crystal Structure Of Human Steroidogenic Factor-1
Length = 241
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 111 LYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH 160
+ D+ + I+ WA++ F +L + DQM LLQ+ W+E+L YR + H
Sbjct: 48 MADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQH 97
>pdb|1S0Z|A Chain A, Crystal Structure Of The Vdr Lbd Complexed To Seocalcitol.
pdb|1S19|A Chain A, Crystal Structure Of Vdr Ligand Binding Domain Complexed
To Calcipotriol.
pdb|1TXI|A Chain A, Crystal Structure Of The Vdr Ligand Binding Domain
Complexed To Tx522
pdb|2HAM|A Chain A, Crystal Structure Of Vdr Lbd Complexed To 2alpha-Propyl-
Calcitriol
pdb|2HAR|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2 Alpha-(3-
Hydroxy-1-Propoxy) Calcitriol
pdb|2HAS|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-(1-
Propoxy) Calcitriol
pdb|2HB7|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha(3-
Hydroxy-1-Propyl) Calcitriol
pdb|2HB8|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-Methyl
Calcitriol
pdb|3CS4|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3CS6|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3A3Z|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277a(C23s)
pdb|3A40|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277b(C23r)
pdb|3A78|A Chain A, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Natural Metabolite
1alpha,25-Dihydroxy-3-Epi-Vitamin D3
pdb|3AUQ|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2alpha- Methyl-19-Norvitamin D3
pdb|3AUR|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2beta- Methyl-19-Norvitamin D3
pdb|3AX8|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With
15alpha-Methoxy-1alpha,25-Dihydroxyvitamin D3
Length = 263
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 60 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 109
>pdb|3B0T|A Chain A, Human Vdr Ligand Binding Domain In Complex With
Maxacalcitol
Length = 254
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 55 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 104
>pdb|3AZ1|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ2|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ3|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
Length = 253
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 54 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 103
>pdb|3A2I|A Chain A, Crystal Structure Of The Human Vitamin D Receptor (H305f)
Ligand Binding Domain Complexed With Tei-9647
Length = 263
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 60 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 109
>pdb|3A2J|A Chain A, Crystal Structure Of The Human Vitamin D Receptor
(H305fH397F) LIGAND Binding Domain Complexed With
Tei-9647
Length = 263
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 60 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 109
>pdb|3M7R|A Chain A, Crystal Structure Of Vdr H305q Mutant
Length = 253
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 54 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 103
>pdb|1DB1|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Complexed To Vitamin D
pdb|1IE8|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Kh1060
pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Mc1288
pdb|3OGT|A Chain A, Design, Chemical Synthesis, Functional Characterization
And Crystal Structure Of The Sidechain Analogue Of
1,25-Dihydroxyvitamin D3.
pdb|3KPZ|A Chain A, Crystal Structure Of A Novel Vitamin D3 Analogue, Zk203278
Showing Dissociated Profile
pdb|3TKC|A Chain A, Design, Synthesis, Evaluation And Structure Of Vitamin D
Analogues With Furan Side Chains
pdb|4G2I|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 259
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 56 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIML 105
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 89 LTVRSETPQSDPTLQTINSLSDL---YDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTW 145
++V S +D ++ I S+ D+ ++L+ ++ WAK IP F +L L+DQ+ LL++
Sbjct: 18 ISVSSPGSSTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHA 77
Query: 146 AEILTLTIAYRSLPH 160
E L L RS+ +
Sbjct: 78 GEHLLLGATKRSMMY 92
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQS----DPTLQTINSLSDL---YDRELVCII 120
S+PS+ N +L+A E+L+ + +P S D + I S++D+ +L+ ++
Sbjct: 1 SLPSI--NALLQA------EVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLV 52
Query: 121 GWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158
WAK IP F +L L+DQ+ LL++ E L L RS+
Sbjct: 53 EWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM 90
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQS----DPTLQTINSLSDL---YDRELVCII 120
S+PS+ N +L+A E+L+ + +P S D + I S++D+ +L+ ++
Sbjct: 7 SLPSI--NALLQA------EVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLV 58
Query: 121 GWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158
WAK IP F +L L+DQ+ LL++ E L L RS+
Sbjct: 59 EWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSM 96
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 66 NKSIPSLEENKMLEALLLCEPEMLTVRSETPQS----DPTLQTINSLSDL---YDRELVC 118
+ S+PS+ N +L+A E+L+ + +P S D + I S++D+ +L+
Sbjct: 5 DSSLPSI--NALLQA------EVLSQQITSPISGINGDIRAKRIASITDVCESMKEQLLV 56
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158
++ WAK IP F +L L+DQ+ LL++ E L L RS+
Sbjct: 57 LVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSM 96
>pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 36/55 (65%)
Query: 104 TINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158
+++L + +++L ++ +A+ +P F + L+DQ+ LL++ W E+L +A+ S+
Sbjct: 48 AVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSI 102
>pdb|1R20|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|3IXP|D Chain D, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 265
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
I+ +AK +PGF+ +S +DQ+ LL++ +E++ L +A R + FA++
Sbjct: 83 IVEFAKGLPGFSKISQSDQITLLKACSSEVMMLRVA-RRYDAATDSVLFANNQAYTRDNY 141
Query: 179 RECGFSEIYQQVKH 192
R+ G + + + + H
Sbjct: 142 RKAGMAYVIEDLLH 155
>pdb|3L0E|A Chain A, X-Ray Crystal Structure Of A Potent Liver X Receptor
Modulator
Length = 253
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 96 PQS-DPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
PQS D Q ++L + I+ +AKQ+PGF L DQ+ LL+++ EI+ L A
Sbjct: 50 PQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETA 109
Query: 155 YRSLPHCAGKIRFASDLVLDERQARECGF 183
R H I F D + G
Sbjct: 110 -RRYNHETESITFLKDFTYSKDDFHRAGL 137
>pdb|1R1K|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|2R40|D Chain D, Crystal Structure Of 20e Bound Ecr/usp
Length = 266
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
I+ +AK +PGF +S +DQ+ LL++ +E++ L +A R + FA++
Sbjct: 84 IVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVA-RRYDAATDSVLFANNQAYTRDNY 142
Query: 179 RECGFSEIYQQVKH 192
R+ G + + + + H
Sbjct: 143 RKAGMAYVIEDLLH 156
>pdb|1UPV|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
pdb|1UPW|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
Length = 257
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 96 PQS-DPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
PQS D Q ++L + I+ +AKQ+PGF L DQ+ LL+++ EI+ L A
Sbjct: 54 PQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETA 113
Query: 155 YR 156
R
Sbjct: 114 RR 115
>pdb|1PQ6|A Chain A, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|B Chain B, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|C Chain C, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|D Chain D, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ9|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQC|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|3KFC|A Chain A, Complex Structure Of Lxr With An Agonist
pdb|3KFC|B Chain B, Complex Structure Of Lxr With An Agonist
pdb|3KFC|C Chain C, Complex Structure Of Lxr With An Agonist
pdb|3KFC|D Chain D, Complex Structure Of Lxr With An Agonist
Length = 253
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 96 PQS-DPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
PQS D Q ++L + I+ +AKQ+PGF L DQ+ LL+++ EI+ L A
Sbjct: 50 PQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETA 109
Query: 155 YR 156
R
Sbjct: 110 RR 111
>pdb|1P8D|A Chain A, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
pdb|1P8D|B Chain B, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
Length = 250
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 96 PQS-DPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
PQS D Q ++L + I+ +AKQ+PGF L DQ+ LL+++ EI+ L A
Sbjct: 47 PQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETA 106
Query: 155 YR 156
R
Sbjct: 107 RR 108
>pdb|3IPQ|A Chain A, X-Ray Structure Of Gw3965 Synthetic Agonist Bound To The
Lxr
pdb|3IPS|A Chain A, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPS|B Chain B, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPU|A Chain A, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
pdb|3IPU|B Chain B, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
Length = 283
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
I+ +AKQ+PGF LS DQ+ LL+++ E++ L + R P + I F D +
Sbjct: 104 IVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNP-GSESITFLKDFSYNREDF 162
Query: 179 RECGF 183
+ G
Sbjct: 163 AKAGL 167
>pdb|1UHL|B Chain B, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 242
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
I+ +AKQ+PGF LS DQ+ LL+++ E++ L + R P + I F D +
Sbjct: 63 IVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNP-GSESITFLKDFSYNREDF 121
Query: 179 RECG 182
+ G
Sbjct: 122 AKAG 125
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAY------RSLPHCAGKIRFASDL 171
++ +AK+IPGF DLS +DQ+ LL++ E+L + A R++ +GK DL
Sbjct: 31 VVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGKKYSVDDL 89
>pdb|4DK8|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
pdb|4DK8|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
Length = 247
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 96 PQS-DPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
PQS D Q ++L + I+ +AKQ+PGF L DQ+ LL+++ EI+ L A
Sbjct: 44 PQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETA 103
Query: 155 YR 156
R
Sbjct: 104 RR 105
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAY------RSLPHCAGKIRFASDL 171
++ +AK+IPGF DLS +DQ+ LL++ E+L + A R++ +GK DL
Sbjct: 36 VVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGKKYSVDDL 94
>pdb|2ACL|B Chain B, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|D Chain D, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|F Chain F, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|H Chain H, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
Length = 244
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
I+ +AKQ+PGF LS DQ+ LL+++ E++ L + R P + I F D +
Sbjct: 65 IVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNP-GSESITFLKDFSYNREDF 123
Query: 179 RECG 182
+ G
Sbjct: 124 AKAG 127
>pdb|3FC6|B Chain B, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|D Chain D, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|B Chain B, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|D Chain D, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 266
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
I+ +AKQ+PGF LS DQ+ LL+++ E++ L + R P + I F D +
Sbjct: 87 IVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNP-GSESITFLKDFSYNREDF 145
Query: 179 RECGF 183
+ G
Sbjct: 146 AKAGL 150
>pdb|2XHS|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Fushi
Tarazu Factor 1 Of Drosophila Melanogaster
Length = 245
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 113 DRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
D+ L + WA+ F DL ++DQ +LLQ +W++ L L
Sbjct: 56 DQNLFSQVDWARNTVFFKDLKVDDQXKLLQHSWSDXLVL 94
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
++ +AK+IPGF DLS +DQ+ LL++ E+L + A
Sbjct: 31 VVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFA 66
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
++ +AK IPGF DLS +DQ+ LL++ E+L + A
Sbjct: 81 VVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFA 116
>pdb|4DK7|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
pdb|4DK7|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
Length = 247
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 96 PQS-DPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
PQS D Q ++L + I+ +AKQ+PGF L DQ+ LL+++ EI L A
Sbjct: 44 PQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIXLLETA 103
Query: 155 YR 156
R
Sbjct: 104 RR 105
>pdb|3PRG|A Chain A, Ligand Binding Domain Of Human Peroxisome Proliferator
Activated Receptor
Length = 278
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 97 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 132
>pdb|2HFP|A Chain A, Crystal Structure Of Ppar Gamma With N-Sulfonyl-2-Indole
Carboxamide Ligands
Length = 282
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 101 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 136
>pdb|3ET3|A Chain A, Structure Of Ppargamma With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 292
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 111 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 146
>pdb|2OM9|A Chain A, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|B Chain B, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|C Chain C, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|D Chain D, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|3SZ1|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
pdb|3SZ1|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
Length = 278
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 97 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 132
>pdb|1NYX|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
pdb|1NYX|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
Length = 276
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 95 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 130
>pdb|3PBA|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PBA|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PO9|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
pdb|3PO9|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
Length = 286
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 105 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 140
>pdb|3BC5|A Chain A, X-Ray Crystal Structure Of Human Ppar Gamma With
2-(5-(3-(2-
(5-Methyl-2-Phenyloxazol-4-Yl)ethoxy)benzyl)-2-Phenyl-
2h-1, 2,3-Triazol-4-Yl)acetic Acid
Length = 296
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 115 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 150
>pdb|2Q59|B Chain B, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
pdb|2Q5P|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5P|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5S|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q5S|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q61|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q61|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q6R|A Chain A, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6R|B Chain B, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6S|A Chain A, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
pdb|2Q6S|B Chain B, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
Length = 274
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 93 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 128
>pdb|1I7I|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
pdb|1I7I|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
Length = 292
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 111 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 146
>pdb|1RDT|D Chain D, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
Length = 284
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 103 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 138
>pdb|1K74|D Chain D, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides
Length = 283
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 102 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 137
>pdb|3S9S|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With A
Benzimidazole Partial Agonist
Length = 284
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 103 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 138
>pdb|3R8A|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
pdb|3R8A|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
Length = 282
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 101 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 136
>pdb|3ADS|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADS|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADT|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADT|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADU|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADU|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADV|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADV|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADW|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADW|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADX|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3ADX|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3R8I|A Chain A, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|3R8I|B Chain B, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|2YFE|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|2YFE|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|4A4V|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4V|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4E4K|A Chain A, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4K|B Chain B, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4Q|A Chain A, Crystal Structure Of Ppargamma With The Ligand Fs214
pdb|4E4Q|B Chain B, Crystal Structure Of Ppargamma With The Ligand Fs214
Length = 287
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 106 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 141
>pdb|3ET0|A Chain A, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
pdb|3ET0|B Chain B, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
Length = 292
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 111 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 146
>pdb|2VV1|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
Length = 276
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 95 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 130
>pdb|2I4J|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4J|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4P|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4P|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4Z|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|2I4Z|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|3B3K|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3B3K|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3CDS|A Chain A, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3CDS|B Chain B, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3D6D|A Chain A, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3D6D|B Chain B, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3CDP|A Chain A, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|3CDP|B Chain B, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|2ZK0|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK0|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK1|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK1|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK2|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK2|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK3|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK3|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK5|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK5|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK6|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZK6|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZNO|A Chain A, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|2ZNO|B Chain B, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3HO0|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HO0|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3AN3|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN3|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN4|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3AN4|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3VJH|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJH|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJI|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
pdb|3VJI|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
Length = 286
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 106 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 141
>pdb|1WM0|X Chain X, Ppargamma In Complex With A 2-Baba Compound
Length = 292
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 111 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 146
>pdb|2VSR|A Chain A, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VSR|B Chain B, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VST|A Chain A, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VST|B Chain B, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VV0|A Chain A, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV0|B Chain B, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV1|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
pdb|2VV2|A Chain A, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV2|B Chain B, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV3|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV3|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV4|A Chain A, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 95 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 130
>pdb|3VN2|A Chain A, Crystal Structure Of Ppargamma Complexed With Telmisartan
Length = 285
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 104 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 139
>pdb|2Q59|A Chain A, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
Length = 274
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 93 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 128
>pdb|1ZEO|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|1ZEO|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|2P4Y|A Chain A, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|2P4Y|B Chain B, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|3TY0|A Chain A, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
pdb|3TY0|B Chain B, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
Length = 277
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 96 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 131
>pdb|1FM6|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|X Chain X, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1ZGY|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|2POB|A Chain A, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|2POB|B Chain B, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|3FUR|A Chain A, Crystal Structure Of Pparg In Complex With Int131
pdb|3H0A|D Chain D, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
pdb|3K8S|A Chain A, Crystal Structure Of Pparg In Complex With T2384
pdb|3K8S|B Chain B, Crystal Structure Of Pparg In Complex With T2384
pdb|3KMG|A Chain A, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
pdb|3KMG|D Chain D, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
Length = 272
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 91 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 126
>pdb|3B0Q|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0Q|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0R|A Chain A, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
pdb|3B0R|B Chain B, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
Length = 274
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 94 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 129
>pdb|3OSI|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSI|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSW|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
pdb|3OSW|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
Length = 285
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 105 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 140
>pdb|3LMP|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3B1M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator Cerco-A
pdb|3V9T|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9V|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9Y|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|4F9M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
Length = 283
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 102 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 137
>pdb|1KNU|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|1KNU|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|2XKW|A Chain A, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|2XKW|B Chain B, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|3R5N|A Chain A, Crystal Structure Of Ppargammalbd Complexed With The
Agonist Magnolol
Length = 274
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 93 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 128
>pdb|3T03|A Chain A, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
pdb|3T03|B Chain B, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
Length = 284
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 103 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 138
>pdb|3CWD|A Chain A, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
pdb|3CWD|B Chain B, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
Length = 270
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 89 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 124
>pdb|2PRG|A Chain A, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2PRG|B Chain B, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2F4B|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2F4B|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2FVJ|A Chain A, A Novel Anti-adipogenic Partial Agonist Of Peroxisome
Proliferator- Activated Receptor-gamma (pparg) Recruits
Pparg-coactivator-1 Alpha (pgc1a) But Potentiates
Insulin Signaling In Vitro
pdb|2G0G|A Chain A, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0G|B Chain B, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0H|A Chain A, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2G0H|B Chain B, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2ATH|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2ATH|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2GTK|A Chain A, Structure-Based Design Of Indole Propionic Acids As Novel
Pparag Co-Agonists
pdb|2HWQ|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWQ|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2Q8S|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|2Q8S|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|3G9E|A Chain A, Aleglitaar. A New. Potent, And Balanced Dual PparaG
AGONIST For The Treatment Of Type Ii Diabetes
pdb|3IA6|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3IA6|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3FEJ|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
pdb|3GBK|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3GBK|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3NOA|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3NOA|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3QT0|A Chain A, Revealing A Steroid Receptor Ligand As A Unique Ppargamma
Agonist
Length = 271
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 90 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 125
>pdb|4PRG|A Chain A, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|B Chain B, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|C Chain C, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|D Chain D, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|1PRG|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|1PRG|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2QMV|A Chain A, High Resolution Structure Of Peroxisone
Proliferation-Activated Receptor Gamma And
Characterisation Of Its Interaction With The Co-
Activator Transcriptional Intermediary Factor 2
Length = 270
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 90 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 125
>pdb|2VV4|B Chain B, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 95 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 130
>pdb|2ZVT|A Chain A, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZVT|B Chain B, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
Length = 286
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 106 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 141
>pdb|3CS8|A Chain A, Structural And Biochemical Basis For The Binding
Selectivity Of Pparg To Pgc-1a
Length = 275
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 95 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 130
>pdb|3U9Q|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With Decanoic
Acid And Pgc-1a Peptide
Length = 269
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
I +AK IPGF +L LNDQ+ LL+ EI+ +A
Sbjct: 89 ITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA 124
>pdb|1PDU|A Chain A, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
pdb|1PDU|B Chain B, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
Length = 244
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 118 CIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRS 157
I +A++IPG+ DL DQ L QS E+ L +AYR+
Sbjct: 62 VIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 101
>pdb|1XNX|A Chain A, Crystal Structure Of Constitutive Androstane Receptor
pdb|1XNX|B Chain B, Crystal Structure Of Constitutive Androstane Receptor
Length = 256
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153
P L + +D+ + II + K +P F L++ DQ+ LL+ EIL +++
Sbjct: 61 PVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISL 114
>pdb|1XLS|E Chain E, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|F Chain F, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|G Chain G, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|H Chain H, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 242
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153
P L + +D+ + II + K +P F L++ DQ+ LL+ EIL +++
Sbjct: 47 PVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISL 100
>pdb|1NAV|A Chain A, Thyroid Receptor Alpha In Complex With An Agonist
Selective For Thyroid Receptor Beta1
Length = 263
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC 161
L+ + + + + ++ +AK++P F++L DQ+ LL+ EI++L A R P
Sbjct: 67 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPE- 125
Query: 162 AGKIRFASDLVLDERQARECGFSEIYQQVKHSG 194
+ + + ++ + Q + G + + G
Sbjct: 126 SDTLTLSGEMAVKREQLKNGGLGVVSDAIFELG 158
>pdb|3UVV|A Chain A, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 265
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC 161
L+ + + + + ++ +AK++P F++L DQ+ LL+ EI++L A R P
Sbjct: 67 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPE- 125
Query: 162 AGKIRFASDLVLDERQARECGFSEIYQQV 190
+ + + ++ + Q + G + +
Sbjct: 126 SETLTLSGEMAVKREQLKNGGLGVVSDAI 154
>pdb|1XV9|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 246
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 96 PQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEI 148
P P L + +D+ ++ +I + K +P F L + DQ+ LL+ EI
Sbjct: 47 PTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEI 99
>pdb|3JZB|A Chain A, Crystal Structure Of Tr-Alfa Bound To The Selective
Thyromimetic Triac
pdb|3ILZ|A Chain A, Structure Of Tr-Alfa Bound To Selective Thyromimetic Gc-1
In Space Group
Length = 267
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC 161
L+ + + + + ++ +AK++P F++L DQ+ LL+ EI++L A R P
Sbjct: 69 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPE- 127
Query: 162 AGKIRFASDLVLDERQARECGFSEIYQQV 190
+ + + ++ + Q + G + +
Sbjct: 128 SDTLTLSGEMAVKREQLKNGGLGVVSDAI 156
>pdb|3HZF|A Chain A, Structure Of Tr-alfa Bound To Selective Thyromimetic Gc-1
In C2 Space Group
Length = 269
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC 161
L+ + + + + ++ +AK++P F++L DQ+ LL+ EI++L A R P
Sbjct: 71 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPE- 129
Query: 162 AGKIRFASDLVLDERQARECGFSEIYQQVKHSG 194
+ + + ++ + Q + G + + G
Sbjct: 130 SDTLTLSGEMAVKREQLKNGGLGVVSDAIFELG 162
>pdb|2H79|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In
Orthorhombic Space Group
Length = 269
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC 161
L+ + + + + ++ +AK++P F++L DQ+ LL+ EI++L A R P
Sbjct: 71 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPE- 129
Query: 162 AGKIRFASDLVLDERQARECGF 183
+ + + ++ + Q + G
Sbjct: 130 SDTLTLSGEMAVKREQLKNGGL 151
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 99 FAKAIPGFANLDLNDQVTLLK 119
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 109 FAKAIPGFANLDLNDQVTLLK 129
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 66 NKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQ 125
++S P +E +E LL + +T + P P ++ + + R L + WA+
Sbjct: 2 DQSTPIIE----VEGPLLSDTH-VTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARS 56
Query: 126 IPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
IP F L + L+++ W E+ TL +A
Sbjct: 57 IPAFQALGQDCNTSLVRACWNELFTLGLA 85
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 110 FAKAIPGFANLDLNDQVTLLK 130
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 92 FAKAIPGFANLDLNDQVTLLK 112
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 92 FAKAIPGFANLDLNDQVTLLK 112
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 91 FAKAIPGFANLDLNDQVTLLK 111
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 95 FAKAIPGFANLDLNDQVTLLK 115
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 113 FAKAIPGFANLDLNDQVTLLK 133
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 107 FAKAIPGFANLDLNDQVTLLK 127
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IPGF +L LNDQ+ LL+
Sbjct: 89 FAKAIPGFANLDLNDQVTLLK 109
>pdb|2H77|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In Monoclinic
Space Group
Length = 269
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC 161
L+ + + + + ++ +AK++P F++L DQ+ LL+ EI++L A R P
Sbjct: 71 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPE- 129
Query: 162 AGKIRFASDLVLDERQARECGFSEIYQQVKHSG 194
+ + + ++ + Q + G + + G
Sbjct: 130 SDTLTLSGEMAVKREQLKNGGLGVVSDAIFELG 162
>pdb|3JZC|A Chain A, Crystal Structure Of Tr-Beta Bound To The Selective
Thyromimetic Triac
Length = 263
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 68 LEAFSHFTKIITPAITRVVDFAKKLPMFXELPXEDQIILLKGCCMEIMSLRAAVRYDP 125
>pdb|1NQ2|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 264
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 69 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRTAVRYEP 126
>pdb|2PIN|A Chain A, Thyroid Receptor Beta In Complex With Inhibitor
pdb|2PIN|B Chain B, Thyroid Receptor Beta In Complex With Inhibitor
Length = 253
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 58 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
>pdb|3D57|A Chain A, Tr Variant D355r
pdb|3D57|B Chain B, Tr Variant D355r
Length = 266
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 72 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 129
>pdb|1NUO|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 261
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 66 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLHAAVRYDP 123
>pdb|2J4A|A Chain A, Human Thyroid Hormone Receptor Beta Ligand Binding Domain
In Complex With Kb131084
Length = 253
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 58 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
>pdb|1Q4X|A Chain A, Crystal Structure Of Human Thyroid Hormone Receptor Beta
Lbd In Complex With Specific Agonist Gc-24
Length = 253
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 58 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
>pdb|1XZX|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
pdb|1Y0X|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
Length = 281
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 86 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 143
>pdb|1NAX|A Chain A, Thyroid Receptor Beta1 In Complex With A Beta-Selective
Ligand
Length = 252
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 58 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
>pdb|1R6G|A Chain A, Crystal Structure Of The Thyroid Hormone Receptor Beta
Ligand Binding Domain In Complex With A Beta Selective
Compound
Length = 259
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 64 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 121
>pdb|3GWS|X Chain X, Crystal Structure Of T3-Bound Thyroid Hormone Receptor
Length = 259
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 65 LEAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDP 122
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 65 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 122
>pdb|1N46|A Chain A, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
pdb|1N46|B Chain B, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
Length = 258
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 63 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 120
>pdb|2NXX|E Chain E, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|F Chain F, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|G Chain G, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|H Chain H, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 248
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYR 156
I+ +AK++PGF L DQ+ LL++ +E++ +A R
Sbjct: 68 IVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARR 105
>pdb|1NQ0|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 68 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 125
>pdb|3IMY|A Chain A, Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
Length = 261
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 66 LEAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDP 123
>pdb|1NQ1|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
L+ + + + + ++ +AK++P F +L DQ+ LL+ EI++L A R P
Sbjct: 68 LEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 125
>pdb|1Z5X|E Chain E, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 310
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYR 156
I+ ++K++PGF L DQ+ LL++ +E++ +A R
Sbjct: 132 IVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARR 169
>pdb|3BEJ|A Chain A, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
pdb|3BEJ|B Chain B, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
Length = 238
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 53 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 110
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 111 ----SDLL--EERIRNSGISDEY 127
>pdb|3GD2|A Chain A, Isoxazole Ligand Bound To Farnesoid X Receptor (Fxr)
Length = 229
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 44 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 101
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 102 ----SDLL--EERIRNSGISDEY 118
>pdb|3DCT|A Chain A, Fxr With Src1 And Gw4064
pdb|3DCU|A Chain A, Fxr With Src1 And Gsk8062
Length = 235
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 50 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 107
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 108 ----SDLL--EERIRNSGISDEY 124
>pdb|1OSH|A Chain A, A Chemical, Genetic, And Structural Analysis Of The
Nuclear Bile Acid Receptor Fxr
Length = 232
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 47 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 104
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 105 ----SDLL--EERIRNSGISDEY 121
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 44 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 101
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 102 ----SDLL--EERIRNSGISDEY 118
>pdb|3L1B|A Chain A, Complex Structure Of Fxr Ligand-Binding Domain With A
Tetrahydroazepinoindole Compound
Length = 233
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 48 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 105
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 106 ----SDLL--EERIRNSGISDEY 122
>pdb|3HC6|A Chain A, Fxr With Src1 And Gsk088
Length = 232
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 47 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 104
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 105 ----SDLL--EERIRNSGISDEY 121
>pdb|3P89|A Chain A, Fxr Bound To A Quinolinecarboxylic Acid
Length = 229
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 44 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 101
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 102 ----SDLL--EERIRNSGISDEY 118
>pdb|3RUT|A Chain A, Fxr With Src1 And Gsk359
pdb|3RUU|A Chain A, Fxr With Src1 And Gsk237
Length = 229
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 44 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 101
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 102 ----SDLL--EERIRNSGISDEY 118
>pdb|3FLI|A Chain A, Discovery Of Xl335, A Highly Potent, Selective And Orally-
Active Agonist Of The Farnesoid X Receptor (Fxr)
Length = 231
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 46 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 103
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 104 ----SDLL--EERIRNSGISDEY 120
>pdb|3HC5|A Chain A, Fxr With Src1 And Gsk826
pdb|3RVF|A Chain A, Fxr With Src1 And Gsk2034
Length = 232
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 47 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 104
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 105 ----SDLL--EERIRNSGISDEY 121
>pdb|3FXV|A Chain A, Identification Of An N-Oxide Pyridine Gw4064 Analogue As A
Potent Fxr Agonist
pdb|3OKH|A Chain A, Crystal Structure Of Human Fxr In Complex With
2-(4-Chlorophenyl)-1-
[(1s)-1-Cyclohexyl-2-(Cyclohexylamino)-2-Oxoethyl]-1h-
Benzimidazole- 6-Carboxylic Acid
pdb|3OKI|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OKI|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OLF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OLF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OMK|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMK|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMM|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OMM|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OOF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOK|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
pdb|3OOK|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
Length = 233
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP +G
Sbjct: 48 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--SGH 105
Query: 165 IRFASDLVLDERQARECGFSEIY 187
SDL+ E + R G S+ Y
Sbjct: 106 ----SDLL--EARIRNSGISDEY 122
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein From
Glyoxalase Family
Length = 338
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 92 RSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEIL-T 150
+SE P + +Q + S+ +L R L + +I G+T++S NDQ + QS E
Sbjct: 169 KSEVP-AKHQIQGMGSV-ELTVRRLDKMASTLTEIFGYTEVSRNDQEAIFQSIKGEAFGE 226
Query: 151 LTIAY----------RSLPHCAGKIRFASDLVLDERQARECGF 183
+ + Y S+ H A +++ ++L E Q ++ GF
Sbjct: 227 IVVKYLDGPTEKPGRGSIHHLAIRVKNDAELAYWEEQVKQRGF 269
>pdb|1OSV|A Chain A, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
pdb|1OSV|B Chain B, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
Length = 230
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP AG
Sbjct: 45 LTEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--AGH 102
Query: 165 IRFASDLVLDERQARECGFSEIY 187
+DL+ E + R+ G S+ Y
Sbjct: 103 ----ADLL--EERIRKSGISDEY 119
>pdb|1OT7|A Chain A, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
pdb|1OT7|B Chain B, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
Length = 229
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL---TIAYRSLPHCAGK 164
L+++ + ++ + K++PGF L DQ+ LL+ + E + L I + LP AG
Sbjct: 45 LTEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP--AGH 102
Query: 165 IRFASDLVLDERQARECGFSEIY 187
+DL+ E + R+ G S+ Y
Sbjct: 103 ----ADLL--EERIRKSGISDEY 119
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 40 VRLDRVRGGRQKYRRNPDLLSQQWPPN--KSIPSLEENKMLEALLLCEPEMLTVRSETPQ 97
V LD V+GG ++ R L+ Q+ P K P L ++ + L LCE E +++R + +
Sbjct: 50 VILDGVKGGTKEKR-----LAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIK 104
Query: 98 SDPTLQTINSLSDLYD 113
P T +L + D
Sbjct: 105 ELPQFATGENLPRVAD 120
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 267 LKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFV 304
+K + N + S+LG + W KDGKV++N +
Sbjct: 771 VKNYNNDLASTLGSTRFEKTRWDGKDKDGKVVVNGTYT 808
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 40 VRLDRVRGGRQKYRRNPDLLSQQWPPN--KSIPSLEENKMLEALLLCEPEMLTVRSETPQ 97
V LD V+GG ++ R L+ Q+ P K P L ++ + L LCE E +++R + +
Sbjct: 33 VILDGVKGGTKEKR-----LAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIK 87
Query: 98 SDPTLQTINSLSDLYD 113
P T +L + D
Sbjct: 88 ELPQFATGENLPRVAD 103
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 267 LKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFV 304
+K + N + S+LG + W KDGKV+ N +
Sbjct: 762 VKNYNNDLASTLGSTRFEKTRWDGKDKDGKVVANGTYT 799
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEIL 149
++ +AK+I GF +L NDQ+ LL+S E++
Sbjct: 73 VVEFAKRITGFMELCQNDQILLLKSGCLEVV 103
>pdb|3SP9|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
pdb|3SP9|B Chain B, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 281
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 103 FAKSIPSFSSLFLNDQVTLLK 123
>pdb|3ET2|A Chain A, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET2|B Chain B, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 287
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
+AK IP F+ L LNDQ+ LL+ E + +A
Sbjct: 109 FAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA 141
>pdb|1GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|1GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|3GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3DY6|A Chain A, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3DY6|B Chain B, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3PEQ|A Chain A, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
pdb|3PEQ|B Chain B, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
Length = 271
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 93 FAKSIPSFSSLFLNDQVTLLK 113
>pdb|2Q5G|A Chain A, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
pdb|2Q5G|B Chain B, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
Length = 283
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
+AK IP F+ L LNDQ+ LL+ E + +A
Sbjct: 105 FAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA 137
>pdb|2GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2BAW|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2BAW|B Chain B, Human Nuclear Receptor-Ligand Complex 1
pdb|3D5F|A Chain A, Crystal Structure Of Ppar-Delta Complex
pdb|3D5F|B Chain B, Crystal Structure Of Ppar-Delta Complex
Length = 267
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 89 FAKSIPSFSSLFLNDQVTLLK 109
>pdb|3TKM|A Chain A, Crystal Structure Ppar Delta Binding Gw0742
Length = 275
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 97 FAKSIPSFSSLFLNDQVTLLK 117
>pdb|2XYJ|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYJ|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
Length = 288
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 110 FAKSIPSFSSLFLNDQVTLLK 130
>pdb|1Y0S|A Chain A, Crystal Structure Of Ppar Delta Complexed With Gw2331
pdb|1Y0S|B Chain B, Crystal Structure Of Ppar Delta Complexed With Gw2331
Length = 272
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 94 FAKSIPSFSSLFLNDQVTLLK 114
>pdb|2ZNP|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNP|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNQ|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
pdb|2ZNQ|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
Length = 276
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 98 FAKSIPSFSSLFLNDQVTLLK 118
>pdb|2J14|A Chain A, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|2J14|B Chain B, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|3OZ0|A Chain A, Ppar Delta In Complex With Azppard02
Length = 285
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
+AK IP F+ L LNDQ+ LL+ E + +A
Sbjct: 107 FAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA 139
>pdb|2AWH|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2AWH|B Chain B, Human Nuclear Receptor-Ligand Complex 1
Length = 268
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 90 FAKSIPSFSSLFLNDQVTLLK 110
>pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEIL 149
++ +AK+I GF +L NDQ+ LL+S E++
Sbjct: 66 VVEFAKRITGFMELCQNDQILLLKSGCLEVV 96
>pdb|2B50|A Chain A, Human Nuclear Receptor-Ligand Complex 2
pdb|2B50|B Chain B, Human Nuclear Receptor-Ligand Complex 2
Length = 272
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 122 WAKQIPGFTDLSLNDQMRLLQ 142
+AK IP F+ L LNDQ+ LL+
Sbjct: 95 FAKSIPSFSSLFLNDQVTLLK 115
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEIL 149
++ +AK+I GF +L NDQ+ LL+S E++
Sbjct: 73 VVEFAKRITGFMELCQNDQILLLKSGCLEVV 103
>pdb|1N83|A Chain A, Crystal Structure Of The Complex Between The Orphan
Nuclear Hormone Receptor Ror(Alpha)-Lbd And Cholesterol
pdb|1S0X|A Chain A, Crystal Structure Of The Human Roralpha Ligand Binding
Domain In Complex With Cholesterol Sulfate At 2.2a
Length = 270
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151
++ +AK+I GF +L NDQ+ LL++ E++ +
Sbjct: 81 VVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFI 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,074,286
Number of Sequences: 62578
Number of extensions: 355902
Number of successful extensions: 1196
Number of sequences better than 100.0: 358
Number of HSP's better than 100.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 412
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)