Query psy11505
Match_columns 312
No_of_seqs 217 out of 1998
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 20:08:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dzy_A Retinoic acid receptor 100.0 4E-44 1.4E-48 337.5 12.4 260 1-310 171-463 (467)
2 3dzy_D Peroxisome proliferator 100.0 3.4E-38 1.2E-42 294.0 15.4 258 2-309 85-417 (419)
3 1lbd_A RXR_LBD, retinoid X rec 100.0 7.6E-37 2.6E-41 271.7 11.0 233 28-310 13-278 (282)
4 3ltx_A Estrogen receptor; cons 100.0 5.1E-32 1.7E-36 235.4 13.6 195 74-310 7-231 (243)
5 1xdk_B RAR-beta, retinoic acid 100.0 1.1E-31 3.9E-36 240.4 13.6 166 102-310 70-265 (303)
6 3k6p_A Steroid hormone recepto 100.0 1.1E-31 3.9E-36 233.8 12.2 195 74-311 19-247 (248)
7 2e2r_A Estrogen-related recept 100.0 1.4E-31 4.7E-36 232.9 11.2 193 75-310 20-242 (244)
8 1ovl_A Orphan nuclear receptor 100.0 9.2E-31 3.1E-35 231.2 13.2 230 35-310 1-268 (271)
9 3oll_A Estrogen receptor beta; 100.0 2.9E-30 1E-34 224.0 12.2 194 74-311 5-239 (240)
10 2ocf_A Estrogen receptor; estr 100.0 3.7E-30 1.3E-34 229.4 12.2 196 72-310 13-250 (298)
11 1xpc_A Estrogen receptor; nucl 100.0 4.5E-30 1.5E-34 223.9 10.9 195 73-310 5-241 (248)
12 1g2n_A Ultraspiracle protein; 100.0 2E-29 7E-34 221.7 14.1 195 74-310 8-255 (264)
13 3v3e_B Nuclear receptor subfam 100.0 1.2E-29 4.1E-34 221.7 12.0 164 101-309 50-245 (257)
14 1fcy_A RAR-gamma-1, retinoic a 100.0 9.8E-30 3.4E-34 220.1 10.8 165 101-308 42-236 (236)
15 3plz_A FTZ-F1 related protein; 100.0 4.1E-30 1.4E-34 225.0 6.3 194 75-310 18-255 (257)
16 2nxx_A Ultraspiracle (USP, NR2 100.0 2.4E-29 8.1E-34 217.6 10.9 191 74-310 11-232 (235)
17 1yye_A ER-beta, estrogen recep 100.0 3.4E-29 1.2E-33 220.5 11.8 192 75-310 4-236 (268)
18 3kmr_A Retinoic acid receptor 100.0 1E-28 3.5E-33 217.1 12.6 166 101-309 66-261 (266)
19 1l2j_A Estrogen receptor beta; 100.0 5.4E-29 1.8E-33 219.6 10.6 193 74-310 31-264 (271)
20 2iz2_A FTZ-F1 alpha, nuclear h 100.0 2E-29 6.8E-34 219.0 7.5 168 101-310 44-242 (243)
21 1pdu_A DHR38, nuclear hormone 100.0 1.7E-28 5.8E-33 213.1 10.9 193 74-311 16-242 (244)
22 2p1t_A Retinoic acid receptor 100.0 1.8E-28 6E-33 212.8 11.0 194 74-310 10-236 (240)
23 3ilz_A Thyroid hormone recepto 100.0 3.6E-28 1.2E-32 213.9 11.9 168 100-310 67-265 (267)
24 3vhv_A Mineralocorticoid recep 99.9 1.2E-28 4.1E-33 216.0 8.2 193 77-311 14-244 (260)
25 1ymt_A Steroidogenic factor 1; 99.9 1.5E-28 5.1E-33 214.0 8.5 168 102-311 44-245 (246)
26 1hg4_A Ultraspiracle; nuclear 99.9 7.1E-28 2.4E-32 213.6 12.5 168 101-310 45-269 (279)
27 3mnp_A Glucocorticoid receptor 99.9 1.7E-28 6E-33 215.0 8.4 193 76-310 15-244 (261)
28 3cjw_A COUP transcription fact 99.9 3.1E-28 1E-32 211.8 9.3 195 74-310 8-233 (244)
29 3f5c_B Nuclear receptor subfam 99.9 1.7E-28 5.8E-33 215.6 7.5 168 102-311 46-268 (268)
30 3p0u_A Nuclear receptor subfam 99.9 1.8E-28 6E-33 213.8 6.8 170 99-310 30-236 (249)
31 1sqn_A PR, progesterone recept 99.9 2.4E-28 8.3E-33 214.3 6.9 193 76-310 14-244 (261)
32 3tx7_B Nuclear receptor subfam 99.9 1.6E-28 5.6E-33 222.9 4.8 194 75-310 113-350 (352)
33 1t7r_A Androgen receptor; nucl 99.9 8.6E-28 3E-32 211.7 9.0 193 76-310 22-252 (269)
34 3vhu_A Mineralocorticoid recep 99.9 7.2E-28 2.4E-32 214.2 7.9 193 77-311 48-278 (294)
35 3ipq_A Oxysterols receptor LXR 99.9 1.8E-27 6.1E-32 211.2 10.2 167 100-310 85-282 (283)
36 3b0t_A Vitamin D3 receptor; nu 99.9 1.7E-27 5.9E-32 208.3 9.4 164 102-308 55-254 (254)
37 2r40_D Ecdysone receptor, 20-h 99.9 2.4E-27 8.2E-32 208.5 9.9 164 102-310 67-263 (266)
38 1nq7_A Nuclear receptor ROR-be 99.9 2.5E-27 8.7E-32 205.9 9.1 164 101-308 48-244 (244)
39 1xvp_B Orphan nuclear receptor 99.9 4.7E-27 1.6E-31 204.6 8.8 165 100-308 51-246 (246)
40 1n83_A Nuclear receptor ROR-al 99.9 8E-27 2.7E-31 205.5 9.6 166 101-310 63-261 (270)
41 3l0l_A Nuclear receptor ROR-ga 99.9 9.6E-27 3.3E-31 202.6 9.8 165 100-308 53-248 (248)
42 2nxx_E Ecdysone receptor (ECR, 99.9 1.1E-26 3.7E-31 202.4 10.1 167 100-311 49-246 (248)
43 2o4j_A Vitamin D3 receptor; nu 99.9 6.6E-27 2.3E-31 208.3 8.0 167 101-310 57-259 (292)
44 1osh_A BIle acid receptor; nuc 99.9 1.5E-26 5.2E-31 199.6 10.0 162 101-310 40-232 (232)
45 1z5x_E Ecdysone receptor ligan 99.9 1E-26 3.6E-31 208.2 9.3 166 101-311 114-310 (310)
46 3vi8_A Peroxisome proliferator 99.9 1E-26 3.5E-31 204.8 9.0 169 98-309 71-271 (273)
47 1nrl_A Orphan nuclear receptor 99.9 1.2E-26 4.1E-31 208.0 5.7 163 102-310 119-314 (316)
48 2hc4_A Vitamin D receptor; alp 99.9 4E-26 1.4E-30 204.0 8.9 167 101-310 100-300 (302)
49 1pzl_A Hepatocyte nuclear fact 99.9 1.9E-26 6.7E-31 199.5 5.2 167 100-309 38-235 (237)
50 3u9q_A Peroxisome proliferator 99.9 3.5E-25 1.2E-29 194.7 10.9 162 103-309 73-268 (269)
51 3cqv_A Nuclear receptor subfam 99.9 1E-24 3.5E-29 183.8 10.6 143 100-285 17-163 (199)
52 3up3_A Acedaf-12; ligand bindi 99.9 1.1E-24 3.8E-29 188.7 5.3 158 107-308 45-241 (243)
53 3n00_A REV-ERBA-alpha; reverba 99.9 6.5E-24 2.2E-28 184.2 8.1 141 102-285 64-208 (245)
54 3gyt_A Nuclear hormone recepto 99.9 3.8E-23 1.3E-27 178.6 6.2 160 107-309 45-242 (244)
55 1lo1_A Steroid hormone recepto 99.6 4.1E-17 1.4E-21 119.4 1.0 55 1-55 38-92 (98)
56 3cbb_A HNF-4-alpha, hepatocyte 99.6 1.2E-16 4.1E-21 112.1 1.7 45 1-45 34-78 (78)
57 1cit_A NGFI-B, protein (orphan 99.6 2.3E-16 7.9E-21 113.4 2.9 50 1-50 34-83 (89)
58 1ynw_B Retinoic acid receptor 99.6 1.3E-16 4.5E-21 116.9 1.7 50 1-50 37-86 (99)
59 1dsz_B RXR-alpha, retinoic aci 99.6 1.6E-16 5.5E-21 113.2 1.9 46 1-46 39-84 (85)
60 2ebl_A COUP transcription fact 99.6 2E-16 6.7E-21 113.7 1.6 47 1-47 41-87 (89)
61 2han_A Protein ultraspiracle; 99.6 2.2E-16 7.5E-21 114.5 1.7 48 1-48 44-91 (93)
62 1dsz_A RAR-alpha, retinoic aci 99.6 2.8E-16 9.4E-21 112.4 1.7 47 1-47 38-84 (86)
63 2a66_A Orphan nuclear receptor 99.6 6.7E-16 2.3E-20 115.7 2.4 51 1-51 43-93 (113)
64 1hcq_A Protein (estrogen recep 99.5 8.6E-16 2.9E-20 109.2 1.5 45 1-45 38-82 (84)
65 1a6y_A Orphan nuclear receptor 99.5 1.2E-15 4E-20 110.9 1.3 47 2-48 42-89 (94)
66 4hn5_A Glucocorticoid receptor 99.5 2.6E-15 8.8E-20 113.1 1.6 48 1-48 63-110 (117)
67 3g9m_A Glucocorticoid receptor 99.5 2.1E-15 7.1E-20 109.0 1.0 49 1-49 36-84 (90)
68 1kb2_A Vitamin D3 receptor; VD 99.5 1.4E-15 4.6E-20 113.7 -0.4 47 1-47 40-86 (110)
69 2han_B Ecdysone receptor; tran 99.5 4E-15 1.4E-19 112.9 0.7 46 1-46 42-87 (119)
70 2lze_A A primordial catalytic 99.5 6.9E-15 2.4E-19 104.6 1.7 43 1-43 36-78 (87)
71 1r4i_A Androgen receptor; AR, 99.5 1.3E-14 4.4E-19 107.4 1.6 45 1-45 41-85 (105)
72 2nll_B Protein (thyroid hormon 99.4 6.1E-15 2.1E-19 109.0 -0.4 47 3-49 39-85 (103)
73 1dsz_A RAR-alpha, retinoic aci 98.9 3.2E-10 1.1E-14 80.8 2.1 39 206-244 4-42 (86)
74 1ynw_B Retinoic acid receptor 98.9 5.1E-10 1.7E-14 81.9 2.5 40 206-245 3-42 (99)
75 1dsz_B RXR-alpha, retinoic aci 98.9 4.1E-10 1.4E-14 80.0 1.9 40 206-245 5-44 (85)
76 3cbb_A HNF-4-alpha, hepatocyte 98.9 4.9E-10 1.7E-14 78.4 2.2 38 208-245 2-39 (78)
77 1hcq_A Protein (estrogen recep 98.9 4.3E-10 1.5E-14 79.8 1.8 38 207-244 5-42 (84)
78 1cit_A NGFI-B, protein (orphan 98.9 5.6E-10 1.9E-14 80.0 2.2 38 207-244 1-38 (89)
79 2ebl_A COUP transcription fact 98.9 6.4E-10 2.2E-14 79.7 2.4 40 206-245 7-46 (89)
80 2han_A Protein ultraspiracle; 98.9 5.3E-10 1.8E-14 80.8 2.0 40 206-245 10-49 (93)
81 3g9m_A Glucocorticoid receptor 98.9 5.8E-10 2E-14 80.4 1.9 40 206-245 2-41 (90)
82 1lo1_A Steroid hormone recepto 98.9 6.6E-10 2.2E-14 81.1 2.1 39 206-244 4-42 (98)
83 1kb2_A Vitamin D3 receptor; VD 98.8 8.5E-10 2.9E-14 82.3 2.2 40 206-245 6-45 (110)
84 2nll_B Protein (thyroid hormon 98.8 1.2E-09 4E-14 80.6 2.3 38 207-244 2-41 (103)
85 1r4i_A Androgen receptor; AR, 98.8 9.3E-10 3.2E-14 81.3 1.7 40 206-245 7-46 (105)
86 2a66_A Orphan nuclear receptor 98.8 8.3E-10 2.8E-14 82.6 1.3 40 206-245 9-48 (113)
87 2han_B Ecdysone receptor; tran 98.8 1.2E-09 4E-14 82.8 2.1 40 206-245 8-47 (119)
88 1a6y_A Orphan nuclear receptor 98.8 1.1E-09 3.7E-14 79.4 1.5 38 206-243 7-44 (94)
89 4hn5_A Glucocorticoid receptor 98.8 1.7E-09 5.9E-14 81.3 1.7 40 206-245 29-68 (117)
90 3dzy_A Retinoic acid receptor 98.5 3.3E-08 1.1E-12 92.9 2.0 41 206-246 137-177 (467)
91 3dzy_D Peroxisome proliferator 98.4 6.9E-08 2.4E-12 89.6 3.1 38 206-243 50-87 (419)
92 2lze_A A primordial catalytic 72.8 0.3 1E-05 34.2 -2.0 23 216-239 14-36 (87)
93 1x5v_A PCFK1; inhibitory cysti 60.0 0.64 2.2E-05 25.1 -1.8 22 10-31 7-30 (34)
94 2vut_I AREA, nitrogen regulato 37.9 19 0.00065 21.3 2.0 28 208-235 3-34 (43)
95 3dfx_A Trans-acting T-cell-spe 36.6 22 0.00076 22.9 2.3 29 207-235 8-40 (63)
96 2ll1_A U1-TRTX-SP1A; toxin; NM 30.9 5.7 0.0002 21.0 -1.0 22 10-31 7-31 (33)
97 1vp6_A CNBD, cyclic-nucleotide 25.8 78 0.0027 22.5 4.3 30 114-143 4-33 (138)
98 3odc_A Poly [ADP-ribose] polym 23.4 40 0.0014 24.4 2.0 21 123-143 75-95 (111)
99 1v9x_A Poly (ADP-ribose) polym 22.0 46 0.0016 24.2 2.1 21 123-143 69-89 (114)
100 3od8_A Poly [ADP-ribose] polym 21.5 48 0.0016 24.2 2.1 20 124-143 89-108 (116)
101 1uw0_A DNA ligase III; DNA rep 21.5 53 0.0018 24.0 2.4 22 123-144 73-94 (117)
No 1
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=4e-44 Score=337.49 Aligned_cols=260 Identities=29% Similarity=0.494 Sum_probs=193.5
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccccccccccCCCCCccCCCCCCCCCCchhHHHHHHH
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEA 80 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (312)
++.|+|+++++|.|++..|++||+|||+||++|||++++||.+|++..++.... .... ...........+++.
T Consensus 171 ~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~k~r~~~~---~~~~----~~~~~~~~~~~ll~a 243 (467)
T 3dzy_A 171 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VEST----SSANEDMPVERILEA 243 (467)
T ss_dssp TCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCCCCCCSCSS---CTTS----TTCSCSSCHHHHHHH
T ss_pred CCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhccccccccccccc---cccc----cccCCCCchhhhhhh
Confidence 457999999999999999999999999999999999999999997654322110 1000 001111223445544
Q ss_pred HHhcCcccccccCC--CCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcc
Q psy11505 81 LLLCEPEMLTVRSE--TPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSL 158 (312)
Q Consensus 81 l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~ 158 (312)
....++........ ..........+..+.++++++++.+|+|||+||+|.+|+.+||++|||++|++++++..|++++
T Consensus 244 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~ 323 (467)
T 3dzy_A 244 ELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI 323 (467)
T ss_dssp HHC----------------------CCTTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccchhhhhhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 44333322111100 0001111223456788899999999999999999999999999999999999999999999998
Q ss_pred cCCCCeeEecccchhhHHhhhhcccchhhhhh----cccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHH
Q psy11505 159 PHCAGKIRFASDLVLDERQARECGFSEIYQQV----KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFK 234 (312)
Q Consensus 159 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i----~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (312)
...+ .+++++|..+.++.....+..++++++ ...+.+|++|++||
T Consensus 324 ~~~~-~~ll~~g~~i~~~~~~~~~~~~~~~~il~~lv~~l~~L~ld~~E~------------------------------ 372 (467)
T 3dzy_A 324 AVKD-GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTEL------------------------------ 372 (467)
T ss_dssp SSTT-BCCCSSSCCCBTHHHHTTTCHHHHHHHHHHTHHHHHHHTCCHHHH------------------------------
T ss_pred cCCC-ceEecCCceechhhhhhhcchHHHHHHHHHHHHHHHHhcCCHHHH------------------------------
Confidence 8766 678899988887776666665555544 44555999999999
Q ss_pred HHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH--------------------------hh
Q psy11505 235 RTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL--------------------------RF 287 (312)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~ 287 (312)
++|+||+|||||++ |++.++|+++|++++.+|.+|+..+ +.
T Consensus 373 ------------~lLkAIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~LRsi~~~~~E~ 440 (467)
T 3dzy_A 373 ------------GCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEH 440 (467)
T ss_dssp ------------HHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999765 33
Q ss_pred hhccccCCccchhHHHHHHHhhh
Q psy11505 288 WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+++++++|.+||++||.|||+|-
T Consensus 441 l~~~kl~g~v~i~~Ll~EMl~a~ 463 (467)
T 3dzy_A 441 LFFFKLIGDTPIDTFLMEMLEAP 463 (467)
T ss_dssp TTTTSTTSCCCCCSHHHHCC---
T ss_pred HHHhhccCCccHHHHHHHHHcCC
Confidence 67789999999999999999974
No 2
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=3.4e-38 Score=293.95 Aligned_cols=258 Identities=19% Similarity=0.307 Sum_probs=171.4
Q ss_pred ceeE-cCCCCCcccccccccccccCchhHHHHhccccccccccccccccccccCCCCCccCCCCCCCCCCchhHHHHHHH
Q psy11505 2 IEYT-CPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEA 80 (312)
Q Consensus 2 ~~Y~-C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (312)
..|. |. ++|.|++..|++||+|||+||++|||++++||.+|++...+...... ..+....+. + .......++..
T Consensus 85 ~~~~~c~--~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~~~~~k~~~~~~-~~~~~~~~~-p-~~~~~~~l~~~ 159 (419)
T 3dzy_D 85 LIYDRCD--LNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAE-ISSDIDQLN-P-ESADLRALAKH 159 (419)
T ss_dssp CCCCCCC--SCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCCTTTTGGGSTTT-TTSTTTTSC-S-TTHHHHHHHHH
T ss_pred ccccccc--CCCCcccccCccchhhhHHHHhhcccchhheeccccccccccccccc-ccccccCCC-C-chhhHHHHHHH
Confidence 4574 64 68999999999999999999999999999999999875543221111 110000000 0 01111111111
Q ss_pred H----HhcCccc-----------------c---------cccC-----CCC-----CCCchhHHHhhHHHHHHHHHHHHH
Q psy11505 81 L----LLCEPEM-----------------L---------TVRS-----ETP-----QSDPTLQTINSLSDLYDRELVCII 120 (312)
Q Consensus 81 l----~~~~~~~-----------------~---------~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~l~~~i 120 (312)
+ ....+.. . .... ..+ ........+..........+..+|
T Consensus 160 ~~~a~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~l~~ae~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~V 239 (419)
T 3dzy_D 160 LYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEIT 239 (419)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHCCSSSCCCEEECSHHHHHCCC----------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCccchhccccccCCCCCCCCcccccchhhhhcccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 1 1100000 0 0000 000 000011122223333445677899
Q ss_pred HHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccc-hhhHHhhhh--cccchhhhhhcccC---
Q psy11505 121 GWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDL-VLDERQARE--CGFSEIYQQVKHSG--- 194 (312)
Q Consensus 121 ewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~-~~~~~~~~~--~~~~~~~~~i~~~~--- 194 (312)
+|||++|+|.+|+.+||++|||++|+++++|+.|....+ +.+++.+|. ++.++.... .++.++++.++.+.
T Consensus 240 ewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~~~l 316 (419)
T 3dzy_D 240 EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---DGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKF 316 (419)
T ss_dssp HHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCS---SEEEEGGGTEEEEHHHHHSSSGGGSGGGHHHHHHHHHH
T ss_pred HHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeecCcccccHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999855443 256665554 344443322 34556666555554
Q ss_pred ccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHH
Q psy11505 195 SLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNS 273 (312)
Q Consensus 195 ~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~ 273 (312)
.+|++|++|| ++++||+||+||++ |+++++|+++|++
T Consensus 317 ~~L~ld~~E~------------------------------------------alLkAivLf~pD~~gL~~~~~Ve~lQe~ 354 (419)
T 3dzy_D 317 NALELDDSDL------------------------------------------AIFIAVIILSGDRPGLLNVKPIEDIQDN 354 (419)
T ss_dssp HHTCCCHHHH------------------------------------------HHHHHHHHSCTTSTTCSCHHHHHHHHHH
T ss_pred HHhCCCHHHH------------------------------------------HHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 4999999999 99999999999998 9999999999999
Q ss_pred HHHHhHhHHHHH------hh--------------------h-hccccCCccchhHHHHHHHhh
Q psy11505 274 ILSSLGDCIYVL------RF--------------------W-STVHKDGKVLMNKLFVEMLEA 309 (312)
Q Consensus 274 ~~~~l~~~~~~~------~~--------------------~-~~~~~~~~~~~~~~~~~~~~~ 309 (312)
++.+|.+|+..+ || + .+++..|.++|++||.|||+.
T Consensus 355 ~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LR~i~~~~~~~l~~~k~~~~~~~l~~Ll~Em~~d 417 (419)
T 3dzy_D 355 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKD 417 (419)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHh
Confidence 999999999876 22 2 234567899999999999975
No 3
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=100.00 E-value=7.6e-37 Score=271.72 Aligned_cols=233 Identities=25% Similarity=0.382 Sum_probs=161.0
Q ss_pred hHHHHhccccccccccccccccccccCCCCCccCCCCCCCCCCchhHHHHHHHHHhcCccccccc--CCCCCCCchhHHH
Q psy11505 28 QKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVR--SETPQSDPTLQTI 105 (312)
Q Consensus 28 ~KCl~vGM~~eaVq~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 105 (312)
-||++|||++||||.+|.+.+++.... ..+ +.+.....+.+.+++.+...++...... .....+.+....+
T Consensus 13 ~kCl~vGMkkeaVq~~R~~~~~~~~~~---~~~----~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 85 (282)
T 1lbd_A 13 GLVPRGSHKREAVQEERQRGKDRNENE---VES----TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPV 85 (282)
T ss_dssp ---------------------------------------CCTTTSCHHHHHHHHHTTCCCHHHHHHHTTCCCSSCTTCHH
T ss_pred CCcCccCCcHHhhcCCCCCCCCCCCCC---CCC----CCCCCCCCCHHHHHHHHHhcCCccccccccccccCCCccccHH
Confidence 489999999999999998766532110 010 0111112235677888877776542111 1112222344578
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhhcccch
Q psy11505 106 NSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSE 185 (312)
Q Consensus 106 ~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 185 (312)
.++++++.+.+..+|+|||++|+|.+|+.+||++|||++|++++++..||++++..+ .+++++|..+.++.....+..+
T Consensus 86 ~~~~~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 164 (282)
T 1lbd_A 86 TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD-GILLATGLHVHRNSAHSAGVGA 164 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSS-EEECTTSCEEEHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCC-ceEecCCcccccchhhhcccHH
Confidence 899999999999999999999999999999999999999999999999999999876 6788999888776665555555
Q ss_pred hhh----hhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCCCc-
Q psy11505 186 IYQ----QVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVK- 260 (312)
Q Consensus 186 ~~~----~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 260 (312)
+++ ++...+.+|++|++|| ++++||+|||||++
T Consensus 165 ~~~~~~~~~~~~l~~L~ld~~E~------------------------------------------~lLkaivL~~pd~~g 202 (282)
T 1lbd_A 165 IFDRVLTELVSKMRDMQMDKTEL------------------------------------------GCLRAIVLFNPDSKG 202 (282)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHH------------------------------------------HHHHHHHHSCTTCTT
T ss_pred HHHHHHHHHHHHHHhhcCCHHHH------------------------------------------HHHHHHHHcCCCCCC
Confidence 554 4556677999999999 99999999999998
Q ss_pred ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hhccccCCccchhHHHHHHHhhh
Q psy11505 261 LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 261 l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
|++..+|+++|++++.+|.+|+..+ || +++.+++|.+|+++||.|||++.
T Consensus 203 Ls~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~i~~ll~eml~~~ 278 (282)
T 1lbd_A 203 LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 278 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHcCC
Confidence 9999999999999999999999765 32 45568899999999999999874
No 4
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.97 E-value=5.1e-32 Score=235.42 Aligned_cols=195 Identities=33% Similarity=0.548 Sum_probs=169.2
Q ss_pred HHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhh
Q psy11505 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~ 153 (312)
...++..+...++...........+......+..++++..+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.
T Consensus 7 ~~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~ 86 (243)
T 3ltx_A 7 TVTILQALNKAALPVLESHHNHGQPPTKVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNC 86 (243)
T ss_dssp HHHHHHHHHTTCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCcchhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999887665544444556678899999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCeeEecccchhhHHhhhhcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchhHH
Q psy11505 154 AYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACK 230 (312)
Q Consensus 154 a~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~ 230 (312)
||++++.+.+.+++++|..++++.....+..++++.+.. .+.+|++|++||
T Consensus 87 a~~s~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~-------------------------- 140 (243)
T 3ltx_A 87 AFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQMMQNHLHKDEL-------------------------- 140 (243)
T ss_dssp HHHTTTTTTSEEEEETTEEEEHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHH--------------------------
T ss_pred HHHhccCCCCeEEecCCcccchhhhcccCHHHHHHHHHHHHHHHHHhCCCHHHH--------------------------
Confidence 999999888789999998887766655666666665544 445999999999
Q ss_pred HHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------------------------
Q psy11505 231 AFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------------------------ 285 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------------------------ 285 (312)
+++|||+|||||++ +++.++|+++|++++.+|.+|+..+
T Consensus 141 ----------------~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~ 204 (243)
T 3ltx_A 141 ----------------LLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQAGER 204 (243)
T ss_dssp ----------------HHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999765
Q ss_pred --hhhhccccCCccchhHHHHHHHhhh
Q psy11505 286 --RFWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 286 --~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+++++.+++|.+|+++||.|||+++
T Consensus 205 ~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 231 (243)
T 3ltx_A 205 GIAFFQRLKSEGVVTFCDLLKEMLDAQ 231 (243)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHhCc
Confidence 3355678899999999999999975
No 5
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.97 E-value=1.1e-31 Score=240.36 Aligned_cols=166 Identities=27% Similarity=0.365 Sum_probs=147.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhhc
Q psy11505 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC 181 (312)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~ 181 (312)
...+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++++.. +.+++++|..++++.....
T Consensus 70 ~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~ 148 (303)
T 1xdk_B 70 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ-DTMTFSDGLTLNRTQMHNA 148 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTT-TEEECTTCBEEEHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccC-CeEEecCCceecHHHHhhc
Confidence 457899999999999999999999999999999999999999999999999999999875 4899999988887776666
Q ss_pred ccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCC
Q psy11505 182 GFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSD 258 (312)
Q Consensus 182 ~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (312)
+..++++.++.+ +.+|++|++|| ++++||+|||||
T Consensus 149 g~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~~pd 186 (303)
T 1xdk_B 149 GFGPLTDLVFTFANQLLPLEMDDTET------------------------------------------GLLSAICLICGD 186 (303)
T ss_dssp TTGGGHHHHHHHHHHHGGGCCCHHHH------------------------------------------HHHHHHHHSCSC
T ss_pred CcHHHHHHHHHHHHHHHHHhCCHHHH------------------------------------------HHHHHHHHhCCC
Confidence 666666666554 45999999999 999999999999
Q ss_pred Cc-ccchHHHHHHHHHHHHHhHhHHHHH------h--------------------hhhccccCCccchhHHHHHHHhhh
Q psy11505 259 VK-LDEFSSLKKFRNSILSSLGDCIYVL------R--------------------FWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 259 ~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
++ |++...|+++|++|+.+|.+|+..+ | .+++.++.|.+|+++||.|||++.
T Consensus 187 ~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 265 (303)
T 1xdk_B 187 RQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENS 265 (303)
T ss_dssp SSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHCCC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCC
Confidence 98 9999999999999999999999765 2 355678899999999999999864
No 6
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.97 E-value=1.1e-31 Score=233.83 Aligned_cols=195 Identities=39% Similarity=0.600 Sum_probs=162.7
Q ss_pred HHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhh
Q psy11505 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~ 153 (312)
.+.++..+...+|...........++.....+.++++++.+.+..+|+|||++|+|.+|+.+||+.|+|++|+++++++.
T Consensus 19 ~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~ 98 (248)
T 3k6p_A 19 VNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGV 98 (248)
T ss_dssp THHHHHHHHHHSCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999987655544444455567789999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCeeEecccchhhHHhhhhcccchhhhhh---cccCccCCCCccccCCceeeeeCCCCcccccccccchhHH
Q psy11505 154 AYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV---KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACK 230 (312)
Q Consensus 154 a~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i---~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~ 230 (312)
||++++.+ +.+++++|..++++.....+..++++.+ ...+.+|++|++||
T Consensus 99 a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~-------------------------- 151 (248)
T 3k6p_A 99 AQRSLPLQ-DELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEY-------------------------- 151 (248)
T ss_dssp HHHHTTSS-SCEEEETTEEECHHHHHHTTTTTHHHHHHHHHHHHHTTTCCHHHH--------------------------
T ss_pred HHHccCCC-CeEEeCCCcccChhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHH--------------------------
Confidence 99999988 5899999988887665555555544444 44555999999999
Q ss_pred HHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------------------------
Q psy11505 231 AFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------------------------ 285 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------------------------ 285 (312)
++++||+|||||++ ++++++|+++|++++.+|.+|+..+
T Consensus 152 ----------------~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~ 215 (248)
T 3k6p_A 152 ----------------VLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQ 215 (248)
T ss_dssp ----------------HHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHTC----CCCCCH-HHHHHTTHHHHHH
T ss_pred ----------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999632
Q ss_pred ------hhhhccccCCccchhHHHHHHHhhhc
Q psy11505 286 ------RFWSTVHKDGKVLMNKLFVEMLEAYL 311 (312)
Q Consensus 286 ------~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
+.+++++++|.+|+++||.|||+|..
T Consensus 216 l~~~~~e~l~~~k~~g~~~i~~Ll~Eml~~k~ 247 (248)
T 3k6p_A 216 TAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMM 247 (248)
T ss_dssp HHHHHHHHHHCC-CCCSSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHHHhccc
Confidence 23566799999999999999999864
No 7
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.97 E-value=1.4e-31 Score=232.85 Aligned_cols=193 Identities=38% Similarity=0.636 Sum_probs=163.1
Q ss_pred HHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhh
Q psy11505 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154 (312)
Q Consensus 75 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a 154 (312)
+.++..+...+|...........+......+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++++++.|
T Consensus 20 ~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a 99 (244)
T 2e2r_A 20 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVV 99 (244)
T ss_dssp CHHHHHHHHTCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHH
Confidence 45788888888864433222233344667899999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCeeEecccchhhHHhhhhcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchhHHH
Q psy11505 155 YRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKA 231 (312)
Q Consensus 155 ~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 231 (312)
|++++.++ .+++++|..++++.....+..++++.+.. .+.+|++|++||
T Consensus 100 ~rs~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~--------------------------- 151 (244)
T 2e2r_A 100 YRSLSFED-ELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEF--------------------------- 151 (244)
T ss_dssp HHTTTSSS-CEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHH---------------------------
T ss_pred HHhcccCC-eEEecCCEeecHHHhhhccHHHHHHHHHHHHHHHHHHcCCHHHH---------------------------
Confidence 99999876 68889998887766655666666655544 445999999999
Q ss_pred HHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------h------------------
Q psy11505 232 FFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------R------------------ 286 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~------------------ 286 (312)
+++|||+|||||++ +++.++|+++|++++.+|.+|+..+ |
T Consensus 152 ---------------~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~ 216 (244)
T 2e2r_A 152 ---------------VTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKA 216 (244)
T ss_dssp ---------------HHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999765 3
Q ss_pred --hhhccccCCccchhHHHHHHHhhh
Q psy11505 287 --FWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 287 --~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
.+++.++.|.+|+++|+.|||+++
T Consensus 217 ~e~l~~~~~~~~~~~~~Ll~Eml~~~ 242 (244)
T 2e2r_A 217 VQHFYNIKLEGKVPMHKLFLEMLEAK 242 (244)
T ss_dssp HHHHHHHHHHCCSCCCHHHHHHHTSC
T ss_pred HHHHHHhhcCCCCChHHHHHHHHhCc
Confidence 355568889999999999999986
No 8
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.97 E-value=9.2e-31 Score=231.18 Aligned_cols=230 Identities=26% Similarity=0.358 Sum_probs=150.7
Q ss_pred cccccccccccccccccccCCCCCccCCCCCCCCCCchhHHHHHHHHHhcCccc--ccccCCCC-----CCCchhHHHhh
Q psy11505 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEM--LTVRSETP-----QSDPTLQTINS 107 (312)
Q Consensus 35 M~~eaVq~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~-----~~~~~~~~~~~ 107 (312)
|++|+||.+|.++++.+..+.........++.. +......++.......+.. .......+ ........+..
T Consensus 1 M~kE~Vr~dr~~~~r~~~~~~~~~~~~~~~~~~--~~~li~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (271)
T 1ovl_A 1 MVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSP--PVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQ 78 (271)
T ss_dssp -------------------------------------CHHHHHHHHHHHTSCCTTSCBCTTCCCC--------CHHHHHH
T ss_pred CCccccccCccccCCCCCCCCCCCcccCCCCCC--HHHHHHHHHHHHHHhCCCcchhhhhccCCCCCcccCcchHHHHHH
Confidence 899999999999887665444332211111111 1112344555555444432 11111111 11234567889
Q ss_pred HHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhhcccchhh
Q psy11505 108 LSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187 (312)
Q Consensus 108 ~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 187 (312)
++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++++..+ .+++++|..++..+. ..+..+++
T Consensus 79 ~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~-~l~~~~g~~~~~~~~-~~~~~~~~ 156 (271)
T 1ovl_A 79 FYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEG-KLIFCNGVVLHRLQC-VRGFGEWI 156 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTTT-EEECTTSBEEEHHHH-TTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCCC-eEEeeCCeeecHHHH-HhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875 899999988776654 34555666
Q ss_pred hhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCCCcccch
Q psy11505 188 QQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVKLDEF 264 (312)
Q Consensus 188 ~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 264 (312)
+.+..+ +.+|++|++|| ++++||+||||..+|++.
T Consensus 157 ~~l~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~~~~~gL~~~ 194 (271)
T 1ovl_A 157 DSIVEFSSNLQNMNIDISAF------------------------------------------SCIAALAMVTERHGLKEP 194 (271)
T ss_dssp HHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHSSCCTTCSCH
T ss_pred HHHHHHHHHHHHhcCCHHHH------------------------------------------HHHHHHHHhCCCCCCCcH
Confidence 655544 44999999999 999999999974449999
Q ss_pred HHHHHHHHHHHHHhHhHHHHH--------hh--------------------hhccccCCccchhHHHHHHHhhh
Q psy11505 265 SSLKKFRNSILSSLGDCIYVL--------RF--------------------WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~~~--------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+.|+++|++++.+|.+|+..+ || +++.++.|.+|+++|+.|||..-
T Consensus 195 ~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~el~~~~ 268 (271)
T 1ovl_A 195 KRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFLDT 268 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHh
Confidence 999999999999999999753 22 44568889999999999998753
No 9
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.97 E-value=2.9e-30 Score=224.03 Aligned_cols=194 Identities=32% Similarity=0.456 Sum_probs=159.8
Q ss_pred HHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhh
Q psy11505 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~ 153 (312)
.+.++..++..+|... .......+.+....+..++++..+.+..+|+|||++|+|.+|+.+||+.|+|++|+++++|+.
T Consensus 5 ~~~~i~~ll~~e~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~ 83 (240)
T 3oll_A 5 PEQLVLTLLEAEPPHV-LISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGL 83 (240)
T ss_dssp HHHHHHHHHHHCCCCC-CCBCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhCCccc-ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888655 333344455677889999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCeeEecccchhhHHhhh-hcccchhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhH
Q psy11505 154 AYRSLPHCAGKIRFASDLVLDERQAR-ECGFSEIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC 229 (312)
Q Consensus 154 a~rs~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~ 229 (312)
||++++.++ .+++++|..+++.... ..+..++++.+. ..+.+|++|++||
T Consensus 84 a~~s~~~~~-~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------- 137 (240)
T 3oll_A 84 MWRSIDHPG-KLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEY------------------------- 137 (240)
T ss_dssp HHHHTTSTT-EEEEETBEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHH-------------------------
T ss_pred HHHccCCCC-eeEecCCcccchhhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHH-------------------------
Confidence 999999774 8999999887765433 234455555444 4455999999999
Q ss_pred HHHHHHHhhhcccceecCCCCceeecCCCCc-ccc-------hHHHHHHHHHHHHHhHhHHHHH---------h------
Q psy11505 230 KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDE-------FSSLKKFRNSILSSLGDCIYVL---------R------ 286 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~-------~~~~~~~~~~~~~~l~~~~~~~---------~------ 286 (312)
+++|||+|||||++ +++ +++++++|++|..+|.+|+..+ |
T Consensus 138 -----------------~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~ 200 (240)
T 3oll_A 138 -----------------LCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLM 200 (240)
T ss_dssp -----------------HHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHH
Confidence 99999999999986 643 5679999999999999999631 2
Q ss_pred --------------hhhccccCCccchhHHHHHHHhhhc
Q psy11505 287 --------------FWSTVHKDGKVLMNKLFVEMLEAYL 311 (312)
Q Consensus 287 --------------~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+++++++|.+|+++||.|||++|.
T Consensus 201 ~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~~ 239 (240)
T 3oll_A 201 LLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHV 239 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHC-
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc
Confidence 3566789999999999999999973
No 10
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.96 E-value=3.7e-30 Score=229.45 Aligned_cols=196 Identities=33% Similarity=0.531 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHH
Q psy11505 72 LEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151 (312)
Q Consensus 72 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L 151 (312)
...+.++..+...+|...........+......+..+++|..+.++.+|+|||++|+|.+|+.+||+.|||++|+++++|
T Consensus 13 ~~~~~~i~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL 92 (298)
T 2ocf_A 13 LTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMI 92 (298)
T ss_dssp CCHHHHHHHHHHSCCCCBCCCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCcccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHH
Confidence 34567888888888865443333333444566789999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCeeEecccchhhHHhh-hhcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccch
Q psy11505 152 TIAYRSLPHCAGKIRFASDLVLDERQA-RECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCE 227 (312)
Q Consensus 152 ~~a~rs~~~~~~~l~~~~g~~~~~~~~-~~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~ 227 (312)
+.||++++..+ .+++++|..+++... ...+..++++.+.. .+.+|++|++||
T Consensus 93 ~~a~rs~~~~~-~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~Ey----------------------- 148 (298)
T 2ocf_A 93 GLVWRSMEHPG-KLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEF----------------------- 148 (298)
T ss_dssp HHHHHTTTSTT-EEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHTTCCHHHH-----------------------
T ss_pred HHHHHhcccCC-ceeecCCceechhhhhhhhhHHHHHHHHHHHHHhHhhhCcCHHHH-----------------------
Confidence 99999999874 899999988876553 23445555555544 455999999999
Q ss_pred hHHHHHHHHhhhcccceecCCCCceeecCCCC--------c-ccchHHHHHHHHHHHHHhHhHHHHH---------hh--
Q psy11505 228 ACKAFFKRTIQVYSGYRQTGACGTLVLANSDV--------K-LDEFSSLKKFRNSILSSLGDCIYVL---------RF-- 287 (312)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~-- 287 (312)
+++|||+|||||+ + |+++..|+++|++++.+|.+|+..+ ||
T Consensus 149 -------------------~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~ 209 (298)
T 2ocf_A 149 -------------------VCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQ 209 (298)
T ss_dssp -------------------HHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -------------------HHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 9999999999998 5 7888999999999999999998642 33
Q ss_pred ------------------hhccccCCccchhHHHHHHHhhh
Q psy11505 288 ------------------WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 ------------------~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+++++++|.+|+++||.|||+++
T Consensus 210 LLl~Lp~Lr~i~~~~~e~l~~~kl~g~~~i~~Ll~Eml~~~ 250 (298)
T 2ocf_A 210 LLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAH 250 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHcCC
Confidence 55678899999999999999875
No 11
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.96 E-value=4.5e-30 Score=223.89 Aligned_cols=195 Identities=32% Similarity=0.532 Sum_probs=160.0
Q ss_pred hHHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHh
Q psy11505 73 EENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLT 152 (312)
Q Consensus 73 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~ 152 (312)
+.+.++..+...+|...........+......+..+++...+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+
T Consensus 5 ~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~ 84 (248)
T 1xpc_A 5 TADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIG 84 (248)
T ss_dssp CHHHHHHHHHHTCCCCCCCCSCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHH
Confidence 35667888888888654443333334445567899999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCeeEecccchhhHHhhh-hcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchh
Q psy11505 153 IAYRSLPHCAGKIRFASDLVLDERQAR-ECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEA 228 (312)
Q Consensus 153 ~a~rs~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~ 228 (312)
.||++++..+ .+.+++|..+++.... ..+..++++.+.. .+.+|++|++||
T Consensus 85 ~a~~s~~~~~-~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------ 139 (248)
T 1xpc_A 85 LVWRSMEHPG-KLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEF------------------------ 139 (248)
T ss_dssp HHHHHTTSTT-EEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHHTCCHHHH------------------------
T ss_pred HHHHhccccC-ceeecCCceeCccchhhhccHHHHHHHHHHHHHHHHHhCCCHHHH------------------------
Confidence 9999998874 8999999887766532 3344555555544 445999999999
Q ss_pred HHHHHHHHhhhcccceecCCCCceeecCCCC--------c-ccchHHHHHHHHHHHHHhHhHHHHH---------hh---
Q psy11505 229 CKAFFKRTIQVYSGYRQTGACGTLVLANSDV--------K-LDEFSSLKKFRNSILSSLGDCIYVL---------RF--- 287 (312)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~--- 287 (312)
+++|||+|||||+ + ++++..|+++|++++.+|.+|+..+ ||
T Consensus 140 ------------------~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~L 201 (248)
T 1xpc_A 140 ------------------VCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQL 201 (248)
T ss_dssp ------------------HHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCCCCcchhhHHHHH
Confidence 9999999999998 4 6778899999999999999999742 33
Q ss_pred -----------------hhccccCCccchhHHHHHHHhhh
Q psy11505 288 -----------------WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 -----------------~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+++.++.|.+|+++|+.|||+++
T Consensus 202 L~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 241 (248)
T 1xpc_A 202 LLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAH 241 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCSSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 55678899999999999999864
No 12
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.96 E-value=2e-29 Score=221.68 Aligned_cols=195 Identities=19% Similarity=0.326 Sum_probs=158.6
Q ss_pred HHHHHHHHHhcCcc-cccccCCCCCCCch----hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHH
Q psy11505 74 ENKMLEALLLCEPE-MLTVRSETPQSDPT----LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEI 148 (312)
Q Consensus 74 ~~~~l~~l~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~ 148 (312)
.+.+++.+...++. ..........+... ...+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++
T Consensus 8 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~w~el 87 (264)
T 1g2n_A 8 IERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNEL 87 (264)
T ss_dssp HHHHHHHHHCCCCCCCCCCSBCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCccccccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHhhHHH
Confidence 56788888888872 22222111111111 36889999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccC---CCCe--------------eEecccchhhHHhhhhcccchhhh----hhcccCccCCCCccccCCc
Q psy11505 149 LTLTIAYRSLPH---CAGK--------------IRFASDLVLDERQARECGFSEIYQ----QVKHSGSLDGIKEEELPRR 207 (312)
Q Consensus 149 ~~L~~a~rs~~~---~~~~--------------l~~~~g~~~~~~~~~~~~~~~~~~----~i~~~~~~L~ld~~E~~~~ 207 (312)
++|+.||++++. +.+. +++++|..++++.....+..++++ ++...+.+|++|++||
T Consensus 88 ~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~--- 164 (264)
T 1g2n_A 88 LLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEY--- 164 (264)
T ss_dssp HHHHHHHHHGGGSCCC----------CCCCCCEEEEETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHHH---
T ss_pred HHHHHHHHccccccccccccccccccccccccceeecCCcccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHHH---
Confidence 999999999988 2335 889999988887766666665553 3445556999999999
Q ss_pred eeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH-
Q psy11505 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL- 285 (312)
Q Consensus 208 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~- 285 (312)
+++|||+|||||++ |+++..|+++|++|+.+|.+|+..+
T Consensus 165 ---------------------------------------~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~ 205 (264)
T 1g2n_A 165 ---------------------------------------VALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSR 205 (264)
T ss_dssp ---------------------------------------HHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---------------------------------------HHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999997 9999999999999999999999765
Q ss_pred -----h--------------------hhhccccCCccchhHHHHHHHhhh
Q psy11505 286 -----R--------------------FWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 286 -----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
| .+++.+++|.+|+++|+.|||++.
T Consensus 206 ~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 255 (264)
T 1g2n_A 206 SSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNH 255 (264)
T ss_dssp TTCTTHHHHHHTHHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTCC
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhCC
Confidence 2 356678899999999999999875
No 13
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.96 E-value=1.2e-29 Score=221.72 Aligned_cols=164 Identities=27% Similarity=0.369 Sum_probs=143.6
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~ 180 (312)
....+..+++..+..+..+|+|||++|+|.+|+.+||+.|||++|+++++++.|+++.+..+ .+.+++|..+++.+..
T Consensus 50 ~~~~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~-~l~~~~~~~~~~~~~~- 127 (257)
T 3v3e_B 50 DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEG-KLIFCSGLVLHRLQCA- 127 (257)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGGT-EEECTTSBEEEHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCC-eeEeCCCccccHHHHH-
Confidence 45678899999999999999999999999999999999999999999999999999998776 7999999988876653
Q ss_pred cccchhhhhhcccCc---cCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 181 CGFSEIYQQVKHSGS---LDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 181 ~~~~~~~~~i~~~~~---~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
.+.+++++.++.+.. +|++|++|| +|+|||+|||
T Consensus 128 ~~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------a~LkAivLfs- 164 (257)
T 3v3e_B 128 RGFGDWIDSILAFSRSLHSLLVDVPAF------------------------------------------ACLSALVLIT- 164 (257)
T ss_dssp HHHTTHHHHHHHHHHHHHHTTCCHHHH------------------------------------------HHHHHHHHSS-
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHH------------------------------------------HHHHHHHHhC-
Confidence 355666766665544 899999999 9999999999
Q ss_pred CCc-ccchHHHHHHHHHHHHHhHhHHHHH----------------------------hhhhccccCCccchhHHHHHHHh
Q psy11505 258 DVK-LDEFSSLKKFRNSILSSLGDCIYVL----------------------------RFWSTVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 258 ~~~-l~~~~~~~~~~~~~~~~l~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 308 (312)
|++ |+++++|+++|++++.+|.+|+... +.++++++.|.+|+++|+.|||.
T Consensus 165 d~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~~~~~~Ll~Emf~ 244 (257)
T 3v3e_B 165 DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFM 244 (257)
T ss_dssp CCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHH
Confidence 555 9999999999999999999999643 23566788999999999999996
Q ss_pred h
Q psy11505 309 A 309 (312)
Q Consensus 309 ~ 309 (312)
.
T Consensus 245 ~ 245 (257)
T 3v3e_B 245 D 245 (257)
T ss_dssp H
T ss_pred h
Confidence 5
No 14
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.96 E-value=9.8e-30 Score=220.13 Aligned_cols=165 Identities=27% Similarity=0.360 Sum_probs=146.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~ 180 (312)
+...+..+++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++++++.|+++++.. +.+.+++|..++++....
T Consensus 42 ~~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~-~~l~~~~g~~~~~~~~~~ 120 (236)
T 1fcy_A 42 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ-DTMTFSDGLTLNRTQMHN 120 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTT-TEEECTTCBEEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccCC-CeEEeCCCceecHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999865 489999998888776666
Q ss_pred cccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 181 CGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 181 ~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
.|..++++.+.. .+.+|++|++|| +++|||+||||
T Consensus 121 ~g~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkaivL~~p 158 (236)
T 1fcy_A 121 AGFGPLTDLVFAFAGQLLPLEMDDTET------------------------------------------GLLSAICLICG 158 (236)
T ss_dssp HTTGGGHHHHHHHHHHHGGGCCCHHHH------------------------------------------HHHHHHHHSCT
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHhcCC
Confidence 666666666554 345999999999 99999999999
Q ss_pred CCc-ccchHHHHHHHHHHHHHhHhHHHHH--------------------------hhhhccccCCccchhHHHHHHHh
Q psy11505 258 DVK-LDEFSSLKKFRNSILSSLGDCIYVL--------------------------RFWSTVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 258 ~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 308 (312)
|++ |++++.|+++|++++.+|.+|+..+ +.+++.++.|.+|+++|+.|||+
T Consensus 159 d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 159 DRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLE 236 (236)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHhC
Confidence 998 9999999999999999999999765 23566788999999999999985
No 15
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.96 E-value=4.1e-30 Score=224.97 Aligned_cols=194 Identities=27% Similarity=0.428 Sum_probs=154.4
Q ss_pred HHHHHHHHhcCcccccc--------c--CCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHH
Q psy11505 75 NKMLEALLLCEPEMLTV--------R--SETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQST 144 (312)
Q Consensus 75 ~~~l~~l~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~ 144 (312)
++++..+...+|..... . ........+...+..+++++.+.+..+|+|||++|+|.+|+.+||+.|||++
T Consensus 18 ~~~i~~l~~~~p~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~ 97 (257)
T 3plz_A 18 PHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNC 97 (257)
T ss_dssp CHHHHHHHHTSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCchHHHHHHHhhhhhccccccCCccccchHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHH
Confidence 34677777777651111 1 1111222345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCC-CCeeEecccchhhHHhhh-hccc--chhh---hhhcccCccCCCCccccCCceeeeeCCCCc
Q psy11505 145 WAEILTLTIAYRSLPHC-AGKIRFASDLVLDERQAR-ECGF--SEIY---QQVKHSGSLDGIKEEELPRRLCLVCGDVAS 217 (312)
Q Consensus 145 ~~~~~~L~~a~rs~~~~-~~~l~~~~g~~~~~~~~~-~~~~--~~~~---~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~ 217 (312)
|+++++|+.||+++..+ .+.+.+++|..++..... ..+. .+++ .++...+.+|++|++||
T Consensus 98 ~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~------------- 164 (257)
T 3plz_A 98 WSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREF------------- 164 (257)
T ss_dssp HHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTTSCHHHHHHHHHHHHHHHHHHHTTCCHHHH-------------
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhhcCCcHHHHHHHHHHHHHHHHHHCCCHHHH-------------
Confidence 99999999999998876 368999999887765443 2222 3333 34445556999999999
Q ss_pred ccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH-----------
Q psy11505 218 GFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL----------- 285 (312)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~----------- 285 (312)
++++||+|||||++ +++.++|+++|++++.+|.+|+..+
T Consensus 165 -----------------------------~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~L 215 (257)
T 3plz_A 165 -----------------------------VCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQL 215 (257)
T ss_dssp -----------------------------HHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred -----------------------------HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 99999999999998 9999999999999999999999865
Q ss_pred ---------------hhhhccccCCccchhHHHHHHHhhh
Q psy11505 286 ---------------RFWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 286 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+.+++++++|.+|+++||.|||+++
T Consensus 216 L~~Lp~Lr~l~~~~~e~l~~~~~~g~~~i~~Ll~Eml~~k 255 (257)
T 3plz_A 216 LLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 255 (257)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTCSCCCSHHHHHHTC-
T ss_pred HHHhHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhcc
Confidence 3366789999999999999999985
No 16
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.96 E-value=2.4e-29 Score=217.61 Aligned_cols=191 Identities=26% Similarity=0.417 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhh
Q psy11505 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~ 153 (312)
.+.+++.....++........ . ......+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~ 87 (235)
T 2nxx_A 11 LERIIEAEKRVECNDPLVALV--V-NENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAF 87 (235)
T ss_dssp HHHHHHHHHHTCCCCCCCBCC--C-SCSSSHHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccccc--c-CccccHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHH
Confidence 456777766666642211111 1 2234578899999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCeeEecccchhhHHhhhhcccchhhhh----hcccCccCCCCccccCCceeeeeCCCCcccccccccchhH
Q psy11505 154 AYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQ----VKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC 229 (312)
Q Consensus 154 a~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~----i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~ 229 (312)
||++++..+ .+++++|..++++.....+..+++++ +...+.+|++|++||
T Consensus 88 a~rs~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~------------------------- 141 (235)
T 2nxx_A 88 SHRSMQAQD-AIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTEL------------------------- 141 (235)
T ss_dssp HHTTSSSSS-SEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCHHHH-------------------------
T ss_pred HHhcccCCC-ceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHHHcCCHHHH-------------------------
Confidence 999999854 78999998887665544555555544 445556999999999
Q ss_pred HHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh---------------
Q psy11505 230 KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------- 287 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------- 287 (312)
+++|||+|||||++ ++++..|+++|++++.+|.+|+..+ ||
T Consensus 142 -----------------~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~ 204 (235)
T 2nxx_A 142 -----------------GCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGL 204 (235)
T ss_dssp -----------------HHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHH
T ss_pred -----------------HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHH
Confidence 99999999999998 9999999999999999999999765 33
Q ss_pred -----hhccccCCccchhHHHHHHHhhh
Q psy11505 288 -----WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 -----~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+++.+++|.+|+++|+.|||+++
T Consensus 205 ~~~e~l~~~~~~g~~~~~~Ll~eml~~~ 232 (235)
T 2nxx_A 205 KCLEHLFFFKLIGDVPIDTFLMEMLEGT 232 (235)
T ss_dssp TCCSCTTTTSSSSCCCHHHHHHHHTTC-
T ss_pred HHHHHHHhhcccCCCcHHHHHHHHHhCC
Confidence 45568899999999999999875
No 17
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.96 E-value=3.4e-29 Score=220.47 Aligned_cols=192 Identities=33% Similarity=0.469 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhh
Q psy11505 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154 (312)
Q Consensus 75 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a 154 (312)
+.++..+...++... .......+......+..++++..+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.|
T Consensus 4 ~~~~~~ll~ae~~~~-~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a 82 (268)
T 1yye_A 4 EQLVLTLLEAEPPHV-LISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLM 82 (268)
T ss_dssp HHHHHHHHHHCCCCC-CCCCCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCccc-ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777543 3333333444566789999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCeeEecccchhhHHhhh-hcccchhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhHH
Q psy11505 155 YRSLPHCAGKIRFASDLVLDERQAR-ECGFSEIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACK 230 (312)
Q Consensus 155 ~rs~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~ 230 (312)
|++++.. +.+++++|..+++.... ..+..++++.+. ..+.+|++|++||
T Consensus 83 ~rs~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~-------------------------- 135 (268)
T 1yye_A 83 WRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEY-------------------------- 135 (268)
T ss_dssp HHHTTST-TEEEEETTEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHHTCCHHHH--------------------------
T ss_pred HHhccCC-CceEecCCcccChhhHhhhccHHHHHHHHHHHHHHHHHhCCCHHHH--------------------------
Confidence 9999987 48999999877765432 234445555554 4455999999999
Q ss_pred HHHHHHhhhcccceecCCCCceeecCCCCc-ccc-------hHHHHHHHHHHHHHhHhHHHHH---------h-------
Q psy11505 231 AFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDE-------FSSLKKFRNSILSSLGDCIYVL---------R------- 286 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~-------~~~~~~~~~~~~~~l~~~~~~~---------~------- 286 (312)
+++|||+|||||++ +++ +.+++++|++|..+|.+|+..+ |
T Consensus 136 ----------------~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~ 199 (268)
T 1yye_A 136 ----------------LCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLML 199 (268)
T ss_dssp ----------------HHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHH
Confidence 99999999999986 754 6789999999999999998642 2
Q ss_pred -------------hhhccccCCccchhHHHHHHHhhh
Q psy11505 287 -------------FWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 287 -------------~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
.+++.+++|.+|+++|+.|||+++
T Consensus 200 Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 236 (268)
T 1yye_A 200 LSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 236 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCc
Confidence 255568899999999999999874
No 18
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.96 E-value=1e-28 Score=217.06 Aligned_cols=166 Identities=25% Similarity=0.373 Sum_probs=146.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~ 180 (312)
....|..+++...+.+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++.+..+ .+.+++|..+.+.....
T Consensus 66 ~~~~~~~~~e~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~-~l~~~~g~~~~~~~~~~ 144 (266)
T 3kmr_A 66 DIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD-TMTFSDGLTLNRTQMHN 144 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTT-EEECTTSBEEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC-eEEecCCcccchHHHhh
Confidence 35678999999999999999999999999999999999999999999999999999987654 89999998888777665
Q ss_pred cccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 181 CGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 181 ~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
.+..++.+.+.. .+.+|++|++|| ++++||+||||
T Consensus 145 ~g~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAIvL~~p 182 (266)
T 3kmr_A 145 AGFGPLTDLVFAFANQLLPLEMDDAET------------------------------------------GLLSAICLICG 182 (266)
T ss_dssp HTTGGGHHHHHHHHHHHGGGCCCHHHH------------------------------------------HHHHHHHHSCT
T ss_pred cchHHHHHHHHHHHHHHHHhCCCHHHH------------------------------------------HHHHHHHHhCC
Confidence 666666665544 445999999999 99999999999
Q ss_pred CCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hhccccCCccchhHHHHHHHhh
Q psy11505 258 DVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WSTVHKDGKVLMNKLFVEMLEA 309 (312)
Q Consensus 258 ~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
|++ |+++++|+++|++++.+|.+|+..+ || +++.++.|.+|+++|+.|||++
T Consensus 183 d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~i~~~~~e~l~~~k~~~~~~~~~Ll~Eml~~ 261 (266)
T 3kmr_A 183 DRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLEN 261 (266)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcC
Confidence 998 9999999999999999999999865 32 4556889999999999999986
No 19
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.96 E-value=5.4e-29 Score=219.56 Aligned_cols=193 Identities=32% Similarity=0.459 Sum_probs=151.0
Q ss_pred HHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhh
Q psy11505 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~ 153 (312)
.+.++..+...++... .......+......+..++++..+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.
T Consensus 31 ~~~~i~~ll~ae~~~~-~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~ 109 (271)
T 1l2j_A 31 PEQLVLTLLEAEPPHV-LISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGL 109 (271)
T ss_dssp HHHHHHHHHHHCCCCC-CCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHH
T ss_pred hhHHHHHHHHcCCccc-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888777543 222222333445678999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCeeEecccchhhHHhhh-hcccchhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhH
Q psy11505 154 AYRSLPHCAGKIRFASDLVLDERQAR-ECGFSEIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC 229 (312)
Q Consensus 154 a~rs~~~~~~~l~~~~g~~~~~~~~~-~~~~~~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~ 229 (312)
||++++..+ .+++++|..++++... ..+..++++.+. ..+.+|++|++||
T Consensus 110 a~rs~~~~~-~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~E~------------------------- 163 (271)
T 1l2j_A 110 MWRSIDHPG-KLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEY------------------------- 163 (271)
T ss_dssp HHHTSSSTT-EECSSSSCCEETGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHH-------------------------
T ss_pred HHHhhccCC-eeeecCCccccchhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHH-------------------------
Confidence 999999874 8889999877765432 234445555554 4445999999999
Q ss_pred HHHHHHHhhhcccceecCCCCceeecCCCCc-ccc-------hHHHHHHHHHHHHHhHhHHHHH---------hh-----
Q psy11505 230 KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDE-------FSSLKKFRNSILSSLGDCIYVL---------RF----- 287 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~-------~~~~~~~~~~~~~~l~~~~~~~---------~~----- 287 (312)
+++|||+|||||++ +++ +++++++|++|..+|.+|+..+ ||
T Consensus 164 -----------------~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl 226 (271)
T 1l2j_A 164 -----------------LCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLM 226 (271)
T ss_dssp -----------------HHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH
Confidence 99999999999986 654 4578999999999999998531 33
Q ss_pred ---------------hhccccCCccchhHHHHHHHhhh
Q psy11505 288 ---------------WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 ---------------~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
++++++.|.+|+++|+.|||+++
T Consensus 227 ~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 264 (271)
T 1l2j_A 227 LLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 264 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHcCC
Confidence 55678999999999999999875
No 20
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.96 E-value=2e-29 Score=219.01 Aligned_cols=168 Identities=19% Similarity=0.317 Sum_probs=144.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCC-CCeeEecccchhhHHhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC-AGKIRFASDLVLDERQAR 179 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~-~~~l~~~~g~~~~~~~~~ 179 (312)
....+..+++++.+.+..+|+|||++|+|.+|+.+||+.|+|++|+++++|+.||+++..+ .+.+.+++|..++.+...
T Consensus 44 ~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~ 123 (243)
T 2iz2_A 44 EVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLG 123 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHh
Confidence 3467899999999999999999999999999999999999999999999999999998764 357788898877665444
Q ss_pred hcccch---hhhhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 180 ECGFSE---IYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 180 ~~~~~~---~~~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
..+..+ .+.++...+.+|++|++|| +++|||+|||
T Consensus 124 ~~~~~~~~~~~~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~n 161 (243)
T 2iz2_A 124 LLGVPQLGDYFNELQNKLQDLKFDMGDY------------------------------------------VCMKFLILLN 161 (243)
T ss_dssp TSSTTSSHHHHHHHHHHHHHTTCCHHHH------------------------------------------HHHHHHHHCC
T ss_pred hcchHHHHHHHHHHHHHHHHHCCCHHHH------------------------------------------HHHHHHHHcC
Confidence 444333 3445555666999999999 9999999999
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH------h--------------------hhhccccCCccchhHHHHHHHhh
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL------R--------------------FWSTVHKDGKVLMNKLFVEMLEA 309 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
||++ +++.++|+++|++++.+|.+|+..+ | .+++.++.|.+|+++|+.|||++
T Consensus 162 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~ 241 (243)
T 2iz2_A 162 PSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHA 241 (243)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHT
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhc
Confidence 9998 9999999999999999999999765 3 35567899999999999999998
Q ss_pred h
Q psy11505 310 Y 310 (312)
Q Consensus 310 ~ 310 (312)
+
T Consensus 242 ~ 242 (243)
T 2iz2_A 242 K 242 (243)
T ss_dssp T
T ss_pred C
Confidence 5
No 21
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.95 E-value=1.7e-28 Score=213.05 Aligned_cols=193 Identities=22% Similarity=0.252 Sum_probs=153.8
Q ss_pred HHHHHHHHHhcCcccc--cccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHH
Q psy11505 74 ENKMLEALLLCEPEML--TVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L 151 (312)
...+++......|... ....+.+........+..++++....+..+|+|||++|+|.+|+.+||+.|||++|++++++
T Consensus 16 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL 95 (244)
T 1pdu_A 16 ITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVL 95 (244)
T ss_dssp HHHHHHHHHHTSCCGGGCBCTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCcCccCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 3455666665555422 12222233445678899999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCeeEecccchhhHHhhhhcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchh
Q psy11505 152 TIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEA 228 (312)
Q Consensus 152 ~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~ 228 (312)
+.||++++.. +.+++++|..+++..... +..++++.+.. .+.+|++|++||
T Consensus 96 ~~a~rs~~~~-~~l~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------ 149 (244)
T 1pdu_A 96 RLAYRARIDD-TKLIFCNGTVLHRTQCLR-SFGEWLNDIMEFSRSLHNLEIDISAF------------------------ 149 (244)
T ss_dssp HHHHHCCSSC-SEEECTTSBEEEHHHHHH-HHTTHHHHHHHHHHHHHHHCCCHHHH------------------------
T ss_pred HHHHHhccCC-CceEeeCCeeecHHHHHh-HHHHHHHHHHHHHHHHHHHcCCHHHH------------------------
Confidence 9999998644 489999998877655432 44455555544 445999999999
Q ss_pred HHHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH--------hh------------
Q psy11505 229 CKAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL--------RF------------ 287 (312)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------~~------------ 287 (312)
+++|||+||| |++ |++++.|+++|++++.+|.+|+..+ ||
T Consensus 150 ------------------~lLkAIvLfn-d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~ 210 (244)
T 1pdu_A 150 ------------------ACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRS 210 (244)
T ss_dssp ------------------HHHHHHHHSS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTHHHHHHH
T ss_pred ------------------HHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence 9999999998 676 9999999999999999999999653 22
Q ss_pred --------hhccccCCccchhHHHHHHHhhhc
Q psy11505 288 --------WSTVHKDGKVLMNKLFVEMLEAYL 311 (312)
Q Consensus 288 --------~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
+++.++.|.+|+++|+.||+++.+
T Consensus 211 l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 242 (244)
T 1pdu_A 211 LSVQGLQRIFYLKLEDLVPAPALIENMFVTTL 242 (244)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHhCCC
Confidence 455688899999999999998753
No 22
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.95 E-value=1.8e-28 Score=212.83 Aligned_cols=194 Identities=27% Similarity=0.421 Sum_probs=152.7
Q ss_pred HHHHHHHHHhcCcccccccCC--CCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHH
Q psy11505 74 ENKMLEALLLCEPEMLTVRSE--TPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTL 151 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L 151 (312)
.+.+++.+...++........ ...+......+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|.+++++
T Consensus 10 ~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il 89 (240)
T 2p1t_A 10 VERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIA 89 (240)
T ss_dssp HHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHH
Confidence 456777777766643211111 111223345678999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCeeEecccchhhHHhhhhcccchhhhh----hcccCccCCCCccccCCceeeeeCCCCcccccccccch
Q psy11505 152 TIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQ----VKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCE 227 (312)
Q Consensus 152 ~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~----i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~ 227 (312)
+.||++++.++ .+++++|..++++.....+...++++ +...+.+|++|++||
T Consensus 90 ~~a~rs~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~----------------------- 145 (240)
T 2p1t_A 90 SFSHRSIAVKD-GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTEL----------------------- 145 (240)
T ss_dssp HHHHHTTTSSS-EEECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCHHHH-----------------------
T ss_pred HHHHhhccCCC-ceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHhhCCCHHHH-----------------------
Confidence 99999998866 67889998887766655555555544 444556999999999
Q ss_pred hHHHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh-------------
Q psy11505 228 ACKAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF------------- 287 (312)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~------------- 287 (312)
++++||+|||||++ ++++++|+++|+++..+|.+|+..+ ||
T Consensus 146 -------------------~~Lkai~l~~pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~~ 206 (240)
T 2p1t_A 146 -------------------GCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 206 (240)
T ss_dssp -------------------HHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHH
T ss_pred -------------------HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999987 9999999999999999999999765 32
Q ss_pred -------hhccccCCccchhHHHHHHHhhh
Q psy11505 288 -------WSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 -------~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+++.+++|.+|+++|+.|||++.
T Consensus 207 ~~~~~e~l~~~~~~~~~~~~~ll~eml~~~ 236 (240)
T 2p1t_A 207 GLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 236 (240)
T ss_dssp HHHHHHHHHHHHHHCCSCCCHHHHHHTSCC
T ss_pred HHHHHHHHHHhCcCCCCchHHHHHHHHcCC
Confidence 45568899999999999999874
No 23
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.95 E-value=3.6e-28 Score=213.90 Aligned_cols=168 Identities=18% Similarity=0.318 Sum_probs=147.7
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhh
Q psy11505 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAR 179 (312)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~ 179 (312)
.+...|..+++.....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++.+..+ .+.+++|..++++...
T Consensus 67 ~~~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~-~l~~~~g~~~~~~~~~ 145 (267)
T 3ilz_A 67 VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESD-TLTLSGEMAVKREQLK 145 (267)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTTTT-BEEETTTEEECHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEecCCeeecHHHHh
Confidence 456789999999999999999999999999999999999999999999999999999988654 8999999888877766
Q ss_pred hcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 180 ECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 180 ~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
..+.+++.+.+.. .+.+|++|++|| ++++||+|||
T Consensus 146 ~~~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~~ 183 (267)
T 3ilz_A 146 NGGLGVVSDAIFELGKSLSAFNLDDTEV------------------------------------------ALLQAVLLMS 183 (267)
T ss_dssp HTTTTHHHHHHHHHHHHHGGGCCCHHHH------------------------------------------HHHHHHHHSC
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCHHHH------------------------------------------HHHHHHHhcC
Confidence 6666666655554 445999999999 9999999999
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH------h--------------------hhhccccCCccch-hHHHHHHHh
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL------R--------------------FWSTVHKDGKVLM-NKLFVEMLE 308 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~--------------------~~~~~~~~~~~~~-~~~~~~~~~ 308 (312)
||++ |+++++|+++|++++.+|.+|+..+ | .+++.++.|.+|+ ++|+.|||+
T Consensus 184 pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~~~~~~~~Ll~Em~~ 263 (267)
T 3ilz_A 184 TDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLHMKVEXPTELFPPLFLEVFE 263 (267)
T ss_dssp CCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHHHHHHHHHHHHHHHHHHC-CCSSCGGGSCHHHHHHTC
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCccCCCcHHHHHhc
Confidence 9998 9999999999999999999999865 2 3566789999997 999999998
Q ss_pred hh
Q psy11505 309 AY 310 (312)
Q Consensus 309 ~~ 310 (312)
+.
T Consensus 264 ~~ 265 (267)
T 3ilz_A 264 DQ 265 (267)
T ss_dssp CS
T ss_pred CC
Confidence 73
No 24
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.95 E-value=1.2e-28 Score=216.03 Aligned_cols=193 Identities=24% Similarity=0.414 Sum_probs=160.8
Q ss_pred HHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhh
Q psy11505 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYR 156 (312)
Q Consensus 77 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~r 156 (312)
++..+...+|...........++.....+.+++++..+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.||+
T Consensus 14 ~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~r 93 (260)
T 3vhv_A 14 PVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWR 93 (260)
T ss_dssp HHHHHHHHCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56777888887766665555666788899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-CeeEecccchhhHHhhhhcccchhhhhh---cccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHH
Q psy11505 157 SLPHCA-GKIRFASDLVLDERQARECGFSEIYQQV---KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAF 232 (312)
Q Consensus 157 s~~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~i---~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 232 (312)
+++.+. +.+.+++|..++++.....+..++++.+ ...+.+|++|++||
T Consensus 94 s~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~---------------------------- 145 (260)
T 3vhv_A 94 SYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEY---------------------------- 145 (260)
T ss_dssp HHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHH----------------------------
T ss_pred hhccCCCCeEEecCCccccHHHhhcccHHHHHHHHHHHHHHHHHcCCCHHHH----------------------------
Confidence 998765 5789999988877766556665555444 44555999999999
Q ss_pred HHHHhhhcccceecCCCCceeecCC-CCc-ccchHHHHHHHHHHHHHhHhHHHHH---------hh--------------
Q psy11505 233 FKRTIQVYSGYRQTGACGTLVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL---------RF-------------- 287 (312)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~-------------- 287 (312)
+++|||+|||| |++ |+++++|+++|++++.+|.+|+..+ ||
T Consensus 146 --------------~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~~Lp~Lr~l~ 211 (260)
T 3vhv_A 146 --------------TIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLV 211 (260)
T ss_dssp --------------HHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhhHHHHHHHHHHHHHHHH
Confidence 99999999999 887 9999999999999999999999632 33
Q ss_pred ------hhcc---ccCCccchhHHHHHHHhhhc
Q psy11505 288 ------WSTV---HKDGKVLMNKLFVEMLEAYL 311 (312)
Q Consensus 288 ------~~~~---~~~~~~~~~~~~~~~~~~~~ 311 (312)
+++. ...+.+++++|+.||+++++
T Consensus 212 ~~~~e~lff~~~~~~~~~~~~p~Ll~Ei~~~~~ 244 (260)
T 3vhv_A 212 SDLLEFCFYTFRESHALKVEFPAMLVEIISDQL 244 (260)
T ss_dssp HHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCcHHHHHHHhccC
Confidence 1211 13568899999999998763
No 25
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.95 E-value=1.5e-28 Score=213.99 Aligned_cols=168 Identities=24% Similarity=0.359 Sum_probs=142.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCC-CCeeEecccchhhHHhhh-
Q psy11505 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC-AGKIRFASDLVLDERQAR- 179 (312)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~-~~~l~~~~g~~~~~~~~~- 179 (312)
...+..++++..+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.||++++.. .+.+.+++|..++.+...
T Consensus 44 ~~~~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~ 123 (246)
T 1ymt_A 44 PAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAV 123 (246)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhh
Confidence 346788999999999999999999999999999999999999999999999999999873 468889999877665432
Q ss_pred hccc--chhh---hhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceee
Q psy11505 180 ECGF--SEIY---QQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVL 254 (312)
Q Consensus 180 ~~~~--~~~~---~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 254 (312)
..+. .+++ .++...+.+|++|++|| +++|||+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~------------------------------------------~lLkAivL 161 (246)
T 1ymt_A 124 QAGSLLHSLVLRAQELVLQLHALQLDRQEF------------------------------------------VCLKFLIL 161 (246)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTCCHHHH------------------------------------------HHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHCCCHHHH------------------------------------------HHHHHHHh
Confidence 2221 2333 34455556999999999 99999999
Q ss_pred cCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------h--------------------hhhccccCCccchhHHHHHHH
Q psy11505 255 ANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------R--------------------FWSTVHKDGKVLMNKLFVEML 307 (312)
Q Consensus 255 ~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~--------------------~~~~~~~~~~~~~~~~~~~~~ 307 (312)
||||++ +++.+.|+++|++++.+|.+|+..+ | ++++.++.|.+|+++|+.|||
T Consensus 162 ~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml 241 (246)
T 1ymt_A 162 FSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEML 241 (246)
T ss_dssp TCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCTTCHHHHHH
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHH
Confidence 999998 9999999999999999999999765 3 355678899999999999999
Q ss_pred hhhc
Q psy11505 308 EAYL 311 (312)
Q Consensus 308 ~~~~ 311 (312)
+++.
T Consensus 242 ~~~~ 245 (246)
T 1ymt_A 242 QAKQ 245 (246)
T ss_dssp HC--
T ss_pred hCcc
Confidence 9863
No 26
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.95 E-value=7.1e-28 Score=213.57 Aligned_cols=168 Identities=20% Similarity=0.348 Sum_probs=136.0
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCe-------eEeccc---
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGK-------IRFASD--- 170 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~-------l~~~~g--- 170 (312)
....+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.||++++.+++. +.+++|
T Consensus 45 ~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~ 124 (279)
T 1hg4_A 45 YKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFE 124 (279)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC-------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCcccc
Confidence 3457899999999999999999999999999999999999999999999999999999876531 344444
Q ss_pred ----------------chhhHHhhhhcccchhhhh----hcccCccCCCCccccCCceeeeeCCCCcccccccccchhHH
Q psy11505 171 ----------------LVLDERQARECGFSEIYQQ----VKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACK 230 (312)
Q Consensus 171 ----------------~~~~~~~~~~~~~~~~~~~----i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~ 230 (312)
..+++......+..+++++ +...+.+|++|++||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~-------------------------- 178 (279)
T 1hg4_A 125 RRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRREL-------------------------- 178 (279)
T ss_dssp ------CCCEEESSSSCEEEHHHHHHHTCHHHHHHHHHHTHHHHHHHTCCHHHH--------------------------
T ss_pred ccccccccceeeecCCcccchhhHhhcchHHHHHHHHHHHHHHHHHhcCCHHHH--------------------------
Confidence 3333333334455555544 444556999999999
Q ss_pred HHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------h-----------------
Q psy11505 231 AFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------R----------------- 286 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~----------------- 286 (312)
+++|||+|||||++ |+++..|+++|++|+.+|.+|+..+ |
T Consensus 179 ----------------~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~~~ 242 (279)
T 1hg4_A 179 ----------------SCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLK 242 (279)
T ss_dssp ----------------HHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999765 3
Q ss_pred ---hhhccccCCccchhHHHHHHHhhh
Q psy11505 287 ---FWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 287 ---~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
.+++.+++|.+|+++|+.|||++.
T Consensus 243 ~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 269 (279)
T 1hg4_A 243 CQDHLFLFRITSDRPLEELFLEQLEAP 269 (279)
T ss_dssp HHHHHHHHTCBCSSCHHHHHHHHHTSC
T ss_pred HHHHHHHHhhhCCCcHHHHHHHHHhCC
Confidence 355678899999999999999875
No 27
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.95 E-value=1.7e-28 Score=215.05 Aligned_cols=193 Identities=24% Similarity=0.408 Sum_probs=161.2
Q ss_pred HHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhh
Q psy11505 76 KMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAY 155 (312)
Q Consensus 76 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~ 155 (312)
.++..+...+|.......+...++.....+.++++++.+.+..+|+|||++|+|.+|+.+||+.|+|++|+++++|+.||
T Consensus 15 ~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~ 94 (261)
T 3mnp_A 15 TLVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGW 94 (261)
T ss_dssp SHHHHHHHHSCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888999887666666666777889999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCC-eeEecccchhhHHhhhhcccchhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhHHH
Q psy11505 156 RSLPHCAG-KIRFASDLVLDERQARECGFSEIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKA 231 (312)
Q Consensus 156 rs~~~~~~-~l~~~~g~~~~~~~~~~~~~~~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 231 (312)
+|++.+.+ .+.+++|..++++.....+..++++.+. ..+.+|++|++||
T Consensus 95 rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~--------------------------- 147 (261)
T 3mnp_A 95 RSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEY--------------------------- 147 (261)
T ss_dssp HHHHHHTTSSEEEETTEEECHHHHTSTTTHHHHHHHHHHHHHHHHHTCCHHHH---------------------------
T ss_pred HcccCCCCCEEEecCCcccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHH---------------------------
Confidence 99987764 5888999888877665556655555444 4455999999999
Q ss_pred HHHHHhhhcccceecCCCCceeecCC-CCc-ccchHHHHHHHHHHHHHhHhHHHHH---------hh-------------
Q psy11505 232 FFKRTIQVYSGYRQTGACGTLVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL---------RF------------- 287 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~------------- 287 (312)
+++|||+|||| |++ |++.++|+++|++|+.+|.+|+..+ ||
T Consensus 148 ---------------~lLkAIvL~np~d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~lL~~Lr~l 212 (261)
T 3mnp_A 148 ---------------LCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDV 212 (261)
T ss_dssp ---------------HHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHcCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHHHH
Confidence 99999999999 987 9999999999999999999999643 33
Q ss_pred -------hhcccc--CCccchhHHHHHHHhhh
Q psy11505 288 -------WSTVHK--DGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 -------~~~~~~--~~~~~~~~~~~~~~~~~ 310 (312)
+++.++ .+.+.+++|+.||++.+
T Consensus 213 ~~~~~e~~f~~~~~~~~~~~~p~Ll~Ei~~~~ 244 (261)
T 3mnp_A 213 VENLLSYCFQTFLDKSMSIEFPEMLAEIITNQ 244 (261)
T ss_dssp HHHHHHHHHHHHHCGGGCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCCcHHHHHHHhcc
Confidence 111222 24677999999999875
No 28
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=211.81 Aligned_cols=195 Identities=24% Similarity=0.325 Sum_probs=141.0
Q ss_pred HHHHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhh
Q psy11505 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTI 153 (312)
Q Consensus 74 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~ 153 (312)
.+.++..+...+|..................+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.
T Consensus 8 ~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~ 87 (244)
T 3cjw_A 8 LSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNA 87 (244)
T ss_dssp HHHHHHHHHHTCSSCC-------------CCCCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCCCcccCCCccccHHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777764321100001111223467889999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCeeEecccchhhHHhh-hhcccch---hhhhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhH
Q psy11505 154 AYRSLPHCAGKIRFASDLVLDERQA-RECGFSE---IYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC 229 (312)
Q Consensus 154 a~rs~~~~~~~l~~~~g~~~~~~~~-~~~~~~~---~~~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~ 229 (312)
||++++.+.+.+.+++|........ ...++.+ .+.++...+.+|++|++||
T Consensus 88 a~~s~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~------------------------- 142 (244)
T 3cjw_A 88 AQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEY------------------------- 142 (244)
T ss_dssp HHHTCCCSCCC-----------------CCCSHHHHHHHHHHHHHHHTTCCHHHH-------------------------
T ss_pred HHHhccccccccccccccccCccchhhhHHHHHHHHHHHHHHHHHHHhCCCHHHH-------------------------
Confidence 9999998876677777754321111 1111222 2344455666999999999
Q ss_pred HHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------h----------------
Q psy11505 230 KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------R---------------- 286 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~---------------- 286 (312)
+++|||+|||||++ +++.+.|+++|++++.+|.+|+..+ |
T Consensus 143 -----------------~lLkaivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~L~~Lr~l~~ 205 (244)
T 3cjw_A 143 -----------------SCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSS 205 (244)
T ss_dssp -----------------HHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHSCH
T ss_pred -----------------HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHhhhH
Confidence 99999999999998 9999999999999999999999865 2
Q ss_pred ----hhhccccCCccchhHHHHHHHhhh
Q psy11505 287 ----FWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 287 ----~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
.+++.++.|.+|+++|+.|||++.
T Consensus 206 ~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 233 (244)
T 3cjw_A 206 SVIEQLFFVRLVGKTPIETLIRDMLLSG 233 (244)
T ss_dssp HHHHHHHTHHHHTTCCGGGTHHHHHTCC
T ss_pred HHHHHHHhhcccCCCcHHHHHHHHHhCC
Confidence 355568889999999999999864
No 29
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.95 E-value=1.7e-28 Score=215.64 Aligned_cols=168 Identities=21% Similarity=0.216 Sum_probs=132.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeE---ecccchhhHHh-
Q psy11505 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIR---FASDLVLDERQ- 177 (312)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~---~~~g~~~~~~~- 177 (312)
....+.+++++.+.++.+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++++.....+. +.+|...+...
T Consensus 46 l~~~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~ 125 (268)
T 3f5c_B 46 LKDPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQE 125 (268)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC----------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhcccccc
Confidence 34678899999999999999999999999999999999999999999999999999987763321 12232222211
Q ss_pred --------------------hhhcc-cchhh---hhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHH
Q psy11505 178 --------------------ARECG-FSEIY---QQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFF 233 (312)
Q Consensus 178 --------------------~~~~~-~~~~~---~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 233 (312)
....+ ..+.+ .++...+.+|++|++||
T Consensus 126 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~----------------------------- 176 (268)
T 3f5c_B 126 TEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEY----------------------------- 176 (268)
T ss_dssp -----------------------CCCCSSHHHHHHHHHHHHHHTTCCHHHH-----------------------------
T ss_pred cccccccccccccccccccchhccccHHHHHHHHHHHHHHHHHhCCCHHHH-----------------------------
Confidence 00111 12333 34445556999999999
Q ss_pred HHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH--------------------------h
Q psy11505 234 KRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL--------------------------R 286 (312)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~ 286 (312)
+++|||+|||||++ |++..+|+++|++++.+|.+|+..+ +
T Consensus 177 -------------~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~~~~e 243 (268)
T 3f5c_B 177 -------------AYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVT 243 (268)
T ss_dssp -------------HHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHHHHHHHHHHTTSCSSHHH
T ss_pred -------------HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999999865 3
Q ss_pred hhhccccCCccchhHHHHHHHhhhc
Q psy11505 287 FWSTVHKDGKVLMNKLFVEMLEAYL 311 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+++++++|.+||++||.|||+|++
T Consensus 244 ~l~~~k~~g~~~i~~Ll~Eml~a~~ 268 (268)
T 3f5c_B 244 ELFFRPIIGAVSMDDMMLEMLCAKL 268 (268)
T ss_dssp HHHTHHHHCSCCHHHHHHHHTTSCC
T ss_pred HHhhhhhcCCCCchHHHHHHHhCcC
Confidence 3667899999999999999999864
No 30
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=213.79 Aligned_cols=170 Identities=21% Similarity=0.239 Sum_probs=136.6
Q ss_pred CchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchh----h
Q psy11505 99 DPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVL----D 174 (312)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~----~ 174 (312)
.+....+.++++|..+.++.+|+|||++|+|.+|+.+||+.|||++|+++++|+.|+++++.+.+.+.+++|... .
T Consensus 30 ~p~~~~~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~ 109 (249)
T 3p0u_A 30 MPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQ 109 (249)
T ss_dssp CCCCSCSSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC--
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccc
Confidence 344556889999999999999999999999999999999999999999999999999999877656666554322 1
Q ss_pred HHhhhhcccchh------hhhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCC
Q psy11505 175 ERQARECGFSEI------YQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGA 248 (312)
Q Consensus 175 ~~~~~~~~~~~~------~~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
++.....+...+ +.++...+.+|++|++|| ++
T Consensus 110 ~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~------------------------------------------~l 147 (249)
T 3p0u_A 110 EDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEY------------------------------------------AY 147 (249)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHTTCCHHHH------------------------------------------HH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhhCCCHHHH------------------------------------------HH
Confidence 111111222222 234455666999999999 99
Q ss_pred CCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH--------------------------hhhhccccCCccchhH
Q psy11505 249 CGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL--------------------------RFWSTVHKDGKVLMNK 301 (312)
Q Consensus 249 ~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 301 (312)
+|||+|||||++ |+++.+|+++|++++.+|.+|+..+ +.+++++++|.+|+++
T Consensus 148 LkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~i~~~~~e~l~f~~~~g~~~i~~ 227 (249)
T 3p0u_A 148 LKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDS 227 (249)
T ss_dssp HHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHHHHHHTTHHHHHTSCHHHHHHHHCCSSHHHHCHHH
T ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHeeeecccCCCCHHH
Confidence 999999999998 9999999999999999999999876 3367789999999999
Q ss_pred HHHHHHhhh
Q psy11505 302 LFVEMLEAY 310 (312)
Q Consensus 302 ~~~~~~~~~ 310 (312)
||.|||++.
T Consensus 228 Ll~eml~~~ 236 (249)
T 3p0u_A 228 IIPYILKME 236 (249)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHhCC
Confidence 999999864
No 31
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.95 E-value=2.4e-28 Score=214.29 Aligned_cols=193 Identities=25% Similarity=0.489 Sum_probs=154.9
Q ss_pred HHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhh
Q psy11505 76 KMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAY 155 (312)
Q Consensus 76 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~ 155 (312)
.++..+...+|...........++.....+..++++..+.+..+|+|||++|+|.+|+.+||+.|||++|.++++++.||
T Consensus 14 ~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~ 93 (261)
T 1sqn_A 14 PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGW 93 (261)
T ss_dssp HHHHHHHHHSCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 57788888888654443333344556678899999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCC-eeEecccchhhHHhhhhcccchhh---hhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHH
Q psy11505 156 RSLPHCAG-KIRFASDLVLDERQARECGFSEIY---QQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKA 231 (312)
Q Consensus 156 rs~~~~~~-~l~~~~g~~~~~~~~~~~~~~~~~---~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 231 (312)
++++.+.+ .+.+++|..++++.....+..++. .++...+++|++|++||
T Consensus 94 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~--------------------------- 146 (261)
T 1sqn_A 94 RSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEF--------------------------- 146 (261)
T ss_dssp HHHHHHTTSSEEEETTEEECGGGCCSHHHHHHHHHHHHHHHHHHHHTCCHHHH---------------------------
T ss_pred HhhhcCCCCeEEeCCCcccchHhhhhhhHHHHHHHHHHHHHHHHHHCCCHHHH---------------------------
Confidence 99887654 578888887766543333333333 34455566999999999
Q ss_pred HHHHHhhhcccceecCCCCceeecCC-CCc-ccchHHHHHHHHHHHHHhHhHHHHH---------hh-------------
Q psy11505 232 FFKRTIQVYSGYRQTGACGTLVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL---------RF------------- 287 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~------------- 287 (312)
+++|||+|||| |++ |++.++|+++|++++.+|.+|+..+ ||
T Consensus 147 ---------------~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~ 211 (261)
T 1sqn_A 147 ---------------LCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDL 211 (261)
T ss_dssp ---------------HHHHHHHHTSEECTTCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHhHHHHHH
Confidence 99999999999 887 9999999999999999999999631 33
Q ss_pred -----hhccccC-----CccchhHHHHHHHhhh
Q psy11505 288 -----WSTVHKD-----GKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 -----~~~~~~~-----~~~~~~~~~~~~~~~~ 310 (312)
.++.+++ |.+++++|+.||+++.
T Consensus 212 ~~~~~~~~~~~~~q~~~~~~~~~~Ll~Ei~~~~ 244 (261)
T 1sqn_A 212 VKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQ 244 (261)
T ss_dssp HHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHhcC
Confidence 1224566 8999999999999853
No 32
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.94 E-value=1.6e-28 Score=222.93 Aligned_cols=194 Identities=27% Similarity=0.427 Sum_probs=140.3
Q ss_pred HHHHHHHHhcCcccccc--------cC--CCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHH
Q psy11505 75 NKMLEALLLCEPEMLTV--------RS--ETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQST 144 (312)
Q Consensus 75 ~~~l~~l~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~ 144 (312)
+.++..+...++..... .. .......+...+..+++++.+.+..+|+|||++|+|.+|+.+||+.|||++
T Consensus 113 p~~i~~l~~~epde~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~ 192 (352)
T 3tx7_B 113 PHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNC 192 (352)
T ss_dssp CHHHHHHHTTCCCHHHHHHHHHHHHHTTCC------CCCHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHH
Confidence 35778888877761111 10 111222345788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCC-CeeEecccchhhHHhhh-hccc--chhh---hhhcccCccCCCCccccCCceeeeeCCCCc
Q psy11505 145 WAEILTLTIAYRSLPHCA-GKIRFASDLVLDERQAR-ECGF--SEIY---QQVKHSGSLDGIKEEELPRRLCLVCGDVAS 217 (312)
Q Consensus 145 ~~~~~~L~~a~rs~~~~~-~~l~~~~g~~~~~~~~~-~~~~--~~~~---~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~ 217 (312)
|+++++|+.||+++..+. +.+++++|..++..... ..+. .+++ .++...+.+|++|++||
T Consensus 193 w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~~g~~~~~l~~~l~~l~~~l~~L~ld~~Ey------------- 259 (352)
T 3tx7_B 193 WSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREF------------- 259 (352)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCHHHH-------------
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHHcCCHHHH-------------
Confidence 999999999999988763 67888999877765443 2222 2333 44555566999999999
Q ss_pred ccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH-----------
Q psy11505 218 GFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL----------- 285 (312)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~----------- 285 (312)
++||||+|||||++ |++.++|+++|++++.+|.+|+..+
T Consensus 260 -----------------------------alLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~kL 310 (352)
T 3tx7_B 260 -----------------------------VCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQL 310 (352)
T ss_dssp -----------------------------HHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred -----------------------------HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 99999999999998 9999999999999999999999765
Q ss_pred ---------------hhhhccccCCccchhHHHHHHHhhh
Q psy11505 286 ---------------RFWSTVHKDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 286 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+.+++++++|.+|+++||.|||+++
T Consensus 311 LllLp~LR~ls~~~~e~L~~~kl~g~~~i~~LL~EMl~ak 350 (352)
T 3tx7_B 311 LLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 350 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCSCSSCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHhcc
Confidence 3366789999999999999999985
No 33
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.94 E-value=8.6e-28 Score=211.69 Aligned_cols=193 Identities=23% Similarity=0.404 Sum_probs=156.4
Q ss_pred HHHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhh
Q psy11505 76 KMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAY 155 (312)
Q Consensus 76 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~ 155 (312)
.++..+...+|.......+...++.....+.++++...+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.||
T Consensus 22 ~~~~~l~~~ep~~~~~~~~~~~p~~~~~~~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~ 101 (269)
T 1t7r_A 22 IFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGW 101 (269)
T ss_dssp HHHHHHHHHCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777888888654444444455556778899999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCC-eeEecccchhhHHhhhhcccchhh---hhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHH
Q psy11505 156 RSLPHCAG-KIRFASDLVLDERQARECGFSEIY---QQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKA 231 (312)
Q Consensus 156 rs~~~~~~-~l~~~~g~~~~~~~~~~~~~~~~~---~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 231 (312)
|+++.+.+ .+++++|..++++.....+..+++ .++...+++|++|++||
T Consensus 102 rs~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~--------------------------- 154 (269)
T 1t7r_A 102 RSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEF--------------------------- 154 (269)
T ss_dssp HHHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHH---------------------------
T ss_pred HhcccCCCCeEEeCCCceecHHhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHH---------------------------
Confidence 99987653 688899988877665544443433 34555566999999999
Q ss_pred HHHHHhhhcccceecCCCCceeecCC-CCc-ccchHHHHHHHHHHHHHhHhHHHHH---------hh-------------
Q psy11505 232 FFKRTIQVYSGYRQTGACGTLVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL---------RF------------- 287 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~------------- 287 (312)
+++|||+|||| |++ |++.+.|+++|++|+.+|.+|+..+ ||
T Consensus 155 ---------------~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l 219 (269)
T 1t7r_A 155 ---------------LCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 219 (269)
T ss_dssp ---------------HHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999 887 9999999999999999999999532 33
Q ss_pred -------hhc--cc-cCCccchhHHHHHHHhhh
Q psy11505 288 -------WST--VH-KDGKVLMNKLFVEMLEAY 310 (312)
Q Consensus 288 -------~~~--~~-~~~~~~~~~~~~~~~~~~ 310 (312)
++. ++ ..|.+++++|+.||+++.
T Consensus 220 ~~~~~e~lf~~~~~~~~~~~~~~~Ll~E~~~~~ 252 (269)
T 1t7r_A 220 ARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQ 252 (269)
T ss_dssp HHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCCcChHHHHHHHHhCc
Confidence 121 12 238899999999999864
No 34
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.94 E-value=7.2e-28 Score=214.16 Aligned_cols=193 Identities=24% Similarity=0.415 Sum_probs=159.1
Q ss_pred HHHHHHhcCcccccccCCCCCCCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhh
Q psy11505 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYR 156 (312)
Q Consensus 77 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~r 156 (312)
.+..+...+|...........+.+....+.+++++..+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.||+
T Consensus 48 ~~~~l~~~eP~~~~~~~~~~~p~~~~~~~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~r 127 (294)
T 3vhu_A 48 PVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWR 127 (294)
T ss_dssp HHHHHHHHCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56677788887766655555666778899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-CeeEecccchhhHHhhhhcccchhhhh---hcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHH
Q psy11505 157 SLPHCA-GKIRFASDLVLDERQARECGFSEIYQQ---VKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAF 232 (312)
Q Consensus 157 s~~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~---i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 232 (312)
+++.+. +.+++++|..++++.....+..++.+. +...+.+|++|++||
T Consensus 128 S~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~Ey---------------------------- 179 (294)
T 3vhu_A 128 SYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEY---------------------------- 179 (294)
T ss_dssp HHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHH----------------------------
T ss_pred hhhcCCCCeEEeCCCccccHHHhhcccHHHHHHHHHHHHHHHHHhCCCHHHH----------------------------
Confidence 988765 578999998887766655565555444 444555999999999
Q ss_pred HHHHhhhcccceecCCCCceeecCC-CCc-ccchHHHHHHHHHHHHHhHhHHHHH---------hh--------------
Q psy11505 233 FKRTIQVYSGYRQTGACGTLVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL---------RF-------------- 287 (312)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~-------------- 287 (312)
++++||+|||| |++ |++.++|+++|++++.+|.+|+..+ ||
T Consensus 180 --------------alLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~RF~~LL~lLp~Lr~l~ 245 (294)
T 3vhu_A 180 --------------TIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLV 245 (294)
T ss_dssp --------------HHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhHHHHHHHHHHHHHHHHH
Confidence 99999999999 887 9999999999999999999999642 33
Q ss_pred ------hhc--cc-cCCccchhHHHHHHHhhhc
Q psy11505 288 ------WST--VH-KDGKVLMNKLFVEMLEAYL 311 (312)
Q Consensus 288 ------~~~--~~-~~~~~~~~~~~~~~~~~~~ 311 (312)
+++ ++ ..+.+++++|+.||+++++
T Consensus 246 ~~~~e~lff~~~q~~~~~~~~p~Ll~Ei~~~~~ 278 (294)
T 3vhu_A 246 SDLLEFCFYTFRESHALKVEFPAMLVEIISDQL 278 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcCCCCHHHHHHHcCCC
Confidence 111 11 2467889999999998763
No 35
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.94 E-value=1.8e-27 Score=211.15 Aligned_cols=167 Identities=19% Similarity=0.304 Sum_probs=142.7
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhh
Q psy11505 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAR 179 (312)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~ 179 (312)
.+...+..+++|....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++.+.. +.+.+++|..+++....
T Consensus 85 ~~~~~~~~l~e~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~-~~~~~~~g~~~~~~~~~ 163 (283)
T 3ipq_A 85 ARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGS-ESITFLKDFSYNREDFA 163 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTT-TEEEETTTEEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCCCceecHHHHH
Confidence 45677899999999999999999999999999999999999999999999999998887655 48999999888776655
Q ss_pred hcccc-hhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeec
Q psy11505 180 ECGFS-EIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLA 255 (312)
Q Consensus 180 ~~~~~-~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (312)
..+.. ++++.+. ..+.+|++|++|| ++++||+||
T Consensus 164 ~~g~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------~lLkAIvL~ 201 (283)
T 3ipq_A 164 KAGLQVEFINPIFEFSRAMNELQLNDAEF------------------------------------------ALLIAISIF 201 (283)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTCCHHHH------------------------------------------HHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHHH
Confidence 55543 4444444 4555999999999 999999999
Q ss_pred CCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hhccccCCccchhHHHHHHHh
Q psy11505 256 NSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WSTVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 256 ~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~~~~~~~~~~~~~~~~~~~~ 308 (312)
|||++ |++...|+++|++|+.+|.+|+..+ || +++.++.|. ++++|+.|||+
T Consensus 202 npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~~-~~~~Ll~Em~~ 280 (283)
T 3ipq_A 202 SADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDK-KLPPLLSEIWD 280 (283)
T ss_dssp CTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHC
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCChHHHHHhc
Confidence 99998 9999999999999999999999765 22 455677775 99999999998
Q ss_pred hh
Q psy11505 309 AY 310 (312)
Q Consensus 309 ~~ 310 (312)
.|
T Consensus 281 ~~ 282 (283)
T 3ipq_A 281 VH 282 (283)
T ss_dssp C-
T ss_pred CC
Confidence 76
No 36
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.94 E-value=1.7e-27 Score=208.29 Aligned_cols=164 Identities=20% Similarity=0.280 Sum_probs=137.7
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecc-cchhhHHhhhh
Q psy11505 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFAS-DLVLDERQARE 180 (312)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~-g~~~~~~~~~~ 180 (312)
...+..+++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.|+++.+.. +.+.+++ |..+.......
T Consensus 55 ~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~ 133 (254)
T 3b0t_A 55 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDD-MSWTCGNQDYKYRVSDVTK 133 (254)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTT-TEEECSSGGGEECHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccCC-CeEEecCCCeeeeHHHHHH
Confidence 345889999999999999999999999999999999999999999999999999876654 4788875 65555555444
Q ss_pred cccc-hhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 181 CGFS-EIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 181 ~~~~-~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
.+.. ++++.+. ..+.+|++|++|| +++|||+|||
T Consensus 134 ~~~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~~ 171 (254)
T 3b0t_A 134 AGHSLELIEPLIKFQVGLKKLNLHEEEH------------------------------------------VLLMAICIVS 171 (254)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHSC
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCHHHH------------------------------------------HHHHHHHHhC
Confidence 4554 5555544 4455999999999 9999999999
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH--------hh--------------------hhcccc--CCccchhHHHHH
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL--------RF--------------------WSTVHK--DGKVLMNKLFVE 305 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------~~--------------------~~~~~~--~~~~~~~~~~~~ 305 (312)
||++ |++++.|+++|++|+.+|.+|+..+ || +++.++ .|.+|+++|+.|
T Consensus 172 pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~E 251 (254)
T 3b0t_A 172 PDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLE 251 (254)
T ss_dssp SCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCHHHHH
T ss_pred CCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCCChHHHH
Confidence 9997 9999999999999999999999764 22 455677 778999999999
Q ss_pred HHh
Q psy11505 306 MLE 308 (312)
Q Consensus 306 ~~~ 308 (312)
|++
T Consensus 252 m~~ 254 (254)
T 3b0t_A 252 VFG 254 (254)
T ss_dssp HHC
T ss_pred hcC
Confidence 985
No 37
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.94 E-value=2.4e-27 Score=208.51 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=142.5
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhhc
Q psy11505 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC 181 (312)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~ 181 (312)
...+..++++..+.+..+|+|||++|+|.+|+.+||+.|||++|+++++++.||++.+.. +.+++++|..++++.....
T Consensus 67 ~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~~-~~l~~~~g~~~~~~~~~~~ 145 (266)
T 2r40_D 67 DMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAAT-DSVLFANNQAYTRDNYRKA 145 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTT-TEEECTTSCEECHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEecCCceecHHHHhhc
Confidence 356889999999999999999999999999999999999999999999999999987655 4899999988887766666
Q ss_pred ccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCC
Q psy11505 182 GFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSD 258 (312)
Q Consensus 182 ~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (312)
+..++++.+..+ +.+|++|++|| +++|||+||| |
T Consensus 146 g~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~n-d 182 (266)
T 2r40_D 146 GMAYVIEDLLHFCRCMYSMMMDNVHY------------------------------------------ALLTAIVIFS-D 182 (266)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCCHHHH------------------------------------------HHHHHHHHTS-C
T ss_pred CHHHHHHHHHHHHHHHhcccCCHHHH------------------------------------------HHHhhheeec-C
Confidence 666666665544 44999999999 9999999999 9
Q ss_pred Cc-ccchHHHHHHHHHHHHHhHhHHHHH---------hh--------------------hhccccCCccchhHHHHHHHh
Q psy11505 259 VK-LDEFSSLKKFRNSILSSLGDCIYVL---------RF--------------------WSTVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 259 ~~-l~~~~~~~~~~~~~~~~l~~~~~~~---------~~--------------------~~~~~~~~~~~~~~~~~~~~~ 308 (312)
++ |++++.|+++|++|+.+|.+|+..+ || +++.++.| +++++|+.||++
T Consensus 183 ~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~ 261 (266)
T 2r40_D 183 RPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCISLKLKN-RKLPPFLEEIWD 261 (266)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHhC
Confidence 87 9999999999999999999999753 22 44557788 699999999998
Q ss_pred hh
Q psy11505 309 AY 310 (312)
Q Consensus 309 ~~ 310 (312)
++
T Consensus 262 ~~ 263 (266)
T 2r40_D 262 VA 263 (266)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 38
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.94 E-value=2.5e-27 Score=205.89 Aligned_cols=164 Identities=19% Similarity=0.219 Sum_probs=141.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~ 180 (312)
....+..+++.....+..+|+|||++|+|.+|+.+||+.|||++|+++++++.|+++.+..+ .+.+ +|..++++....
T Consensus 48 ~~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~-~~~~-~g~~~~~~~~~~ 125 (244)
T 1nq7_A 48 REALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNN-TVLF-EGKYGGMQMFKA 125 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETTTT-EEEE-TTEEEEGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCC-EEeE-CCEEecHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999876554 7888 888877766655
Q ss_pred cccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 181 CGFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 181 ~~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
.+..++++.+..+ +.+|++|++|| +++|||+||||
T Consensus 126 ~~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~~p 163 (244)
T 1nq7_A 126 LGSDDLVNEAFDFAKNLCSLQLTEEEI------------------------------------------ALFSSAVLISP 163 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHSCT
T ss_pred cChHHHHHHHHHHHHHHHHhCCCHHHH------------------------------------------HHHHHHHHcCC
Confidence 5666666665544 44999999999 99999999999
Q ss_pred CCc-ccchHHHHHHHHHHHHHhHhHHHHH-----hh--------------------hhccccCCcc----chhHHHHHHH
Q psy11505 258 DVK-LDEFSSLKKFRNSILSSLGDCIYVL-----RF--------------------WSTVHKDGKV----LMNKLFVEML 307 (312)
Q Consensus 258 ~~~-l~~~~~~~~~~~~~~~~l~~~~~~~-----~~--------------------~~~~~~~~~~----~~~~~~~~~~ 307 (312)
|++ |++++.|+++|+++..+|.+|+..+ || +++.+..|.. |+++|+.||+
T Consensus 164 d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~ 243 (244)
T 1nq7_A 164 DRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELF 243 (244)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHTSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHHhh
Confidence 998 9999999999999999999999764 32 4556777765 8999999998
Q ss_pred h
Q psy11505 308 E 308 (312)
Q Consensus 308 ~ 308 (312)
+
T Consensus 244 ~ 244 (244)
T 1nq7_A 244 N 244 (244)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.94 E-value=4.7e-27 Score=204.58 Aligned_cols=165 Identities=18% Similarity=0.256 Sum_probs=136.1
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhh
Q psy11505 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAR 179 (312)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~ 179 (312)
+....+..+++++.+.+..+|+|||++|+|.+|+.+||++|||++|+++++++.|++++...+ .+ +.++..+++....
T Consensus 51 ~~~~~~~~~~e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~-~~-~~~~~~~~~~~~~ 128 (246)
T 1xvp_B 51 PVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ-NF-LCGPLRYTIEDGA 128 (246)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTT-EE-ECSSCEECHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccC-eE-eeCCeeecHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999987755 44 4555555555444
Q ss_pred hcccc-hhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeec
Q psy11505 180 ECGFS-EIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLA 255 (312)
Q Consensus 180 ~~~~~-~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (312)
..+.. ++.+.+. ..+.+|++|++|| +++|||+||
T Consensus 129 ~~~~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~ 166 (246)
T 1xvp_B 129 RVGFQVEFLELLFHFHGTLRKLQLQEPEY------------------------------------------VLLAAMALF 166 (246)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHTCCCHHHH------------------------------------------HHHHHHHHS
T ss_pred HccccHHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHHc
Confidence 45554 4444444 4455999999999 999999999
Q ss_pred CCCCc-ccchHHHHHHHHHHHHHhHhHHHHH--------hhhh------------------ccccCCccchhHHHHHHHh
Q psy11505 256 NSDVK-LDEFSSLKKFRNSILSSLGDCIYVL--------RFWS------------------TVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 256 ~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~------------------~~~~~~~~~~~~~~~~~~~ 308 (312)
|||++ |++++.|+++|++++.+|.+|+..+ ||.. ...+.|.+|+++||.||++
T Consensus 167 ~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL~~L~~Lr~i~~~~~e~l~~~~~~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 167 SPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS 246 (246)
T ss_dssp CSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHCHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHhcC
Confidence 99998 9999999999999999999999832 3311 0125799999999999985
No 40
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.94 E-value=8e-27 Score=205.46 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=136.4
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~ 180 (312)
+...+..+++.....+..+|+|||++|+|.+|+.+||+.|||++|+++++++.|+++.+..+ .+.++ |.+++.+....
T Consensus 63 ~~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~-~~l~~-g~~~~~~~~~~ 140 (270)
T 1n83_A 63 REVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNN-TVYFD-GKYASPDVFKS 140 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETTTT-EEEET-TEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCCCC-eEEeC-CccccHHHHHh
Confidence 35578888999999999999999999999999999999999999999999999999776544 67774 54555554444
Q ss_pred cccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 181 CGFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 181 ~~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
.+..++++.+..+ +.+|++|++|| +++|||+||||
T Consensus 141 ~~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivLfnp 178 (270)
T 1n83_A 141 LGCEDFISFVFEFGKSLCSMHLTEDEI------------------------------------------ALFSAFVLMSA 178 (270)
T ss_dssp GSCHHHHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHSCT
T ss_pred cCHHHHHHHHHHHHHHHHHHCCCHHHH------------------------------------------HHHHHHHHhCC
Confidence 4555666655544 44999999999 99999999999
Q ss_pred CCc-ccchHHHHHHHHHHHHHhHhHHHHH-----hh--------------------hhccccCCc----cchhHHHHHHH
Q psy11505 258 DVK-LDEFSSLKKFRNSILSSLGDCIYVL-----RF--------------------WSTVHKDGK----VLMNKLFVEML 307 (312)
Q Consensus 258 ~~~-l~~~~~~~~~~~~~~~~l~~~~~~~-----~~--------------------~~~~~~~~~----~~~~~~~~~~~ 307 (312)
|++ |++++.|+++|++|+.+|.+|+..+ || +++.++.|. +|+++|+.|||
T Consensus 179 d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~ 258 (270)
T 1n83_A 179 DRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 258 (270)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcCHHHHHHh
Confidence 998 9999999999999999999999765 33 444567765 59999999999
Q ss_pred hhh
Q psy11505 308 EAY 310 (312)
Q Consensus 308 ~~~ 310 (312)
++.
T Consensus 259 ~~~ 261 (270)
T 1n83_A 259 TSE 261 (270)
T ss_dssp ---
T ss_pred CCC
Confidence 864
No 41
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.93 E-value=9.6e-27 Score=202.62 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=138.5
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhh
Q psy11505 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAR 179 (312)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~ 179 (312)
.+...|..+++..+..+..+|+|||++|+|.+|+.+||+.|||++|+++++++.|+++.+..+ .+.+ +|..++.+...
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~-~~~~-~g~~~~~~~~~ 130 (248)
T 3l0l_A 53 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNR-TVFF-EGKYGGMELFR 130 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETTTT-EEEE-TTEEECGGGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCC-EEEe-CCCcccHHHHh
Confidence 356678999999999999999999999999999999999999999999999999998776654 6777 45455555545
Q ss_pred hcccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 180 ECGFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 180 ~~~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
..+..++++.+..+ +.+|++|++|| ++++||+|||
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivLfn 168 (248)
T 3l0l_A 131 ALGCSELISSIFDFSHSLSALHFSEDEI------------------------------------------ALYTALVLIN 168 (248)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHSC
T ss_pred hccHHHHHHHHHHHHHHHHHhCCCHHHH------------------------------------------HHHHHHHHHC
Confidence 55666666666554 44999999999 9999999999
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH-----------------------hhhhccccCC----ccchhHHHHHHHh
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL-----------------------RFWSTVHKDG----KVLMNKLFVEMLE 308 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~----~~~~~~~~~~~~~ 308 (312)
||++ |+++++|+++|++++.+|.+|+..+ +.+++.+..| .+|+++|+.||++
T Consensus 169 pd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~rf~~LLl~p~LR~i~~~~~e~l~~~k~~~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 169 AHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGSCCTTHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHhhChHHHHHHhhccHHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 9998 9999999999999999999999754 2244567788 4789999999984
No 42
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.93 E-value=1.1e-26 Score=202.40 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=142.7
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhh
Q psy11505 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAR 179 (312)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~ 179 (312)
.....+..++++....+..+|+|||++|+|.+|+.+||+.|||++|+++++++.|+++.+.. +.+++++|..++++...
T Consensus 49 ~~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~~~-~~~~~~~g~~~~~~~~~ 127 (248)
T 2nxx_E 49 QCDVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQT-DSILFVNNQPYSRDSYN 127 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTT-TEEECTTSCEECHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcCCC-CeEEecCCceecHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999987644 48999999888777665
Q ss_pred hcccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 180 ECGFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 180 ~~~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
..+..++++.+..+ +.+|++|++|| ++++||+|||
T Consensus 128 ~~~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAivL~~ 165 (248)
T 2nxx_E 128 LAGMGETIEDLLHFCRTMYSMRVDNAEY------------------------------------------ALLTAIVIFS 165 (248)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCHHHH------------------------------------------HHHHHHHHTC
T ss_pred hcchHHHHHHHHHHHHHHHHhcCCHHHH------------------------------------------HHHHHHHHcC
Confidence 56666666666544 44999999999 9999999997
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH-------hh--------------------hhccccCCccchhHHHHHHHh
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL-------RF--------------------WSTVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~-------~~--------------------~~~~~~~~~~~~~~~~~~~~~ 308 (312)
|++ |++++.|+++|++++.+|.+|+..+ || +++.++.| +++++|+.||++
T Consensus 166 -d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~ 243 (248)
T 2nxx_E 166 -ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKN-KKLPPFLAEIWD 243 (248)
T ss_dssp -CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTT
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCccHHHHHHhc
Confidence 776 9999999999999999999999764 32 44456666 599999999999
Q ss_pred hhc
Q psy11505 309 AYL 311 (312)
Q Consensus 309 ~~~ 311 (312)
++.
T Consensus 244 ~~~ 246 (248)
T 2nxx_E 244 VDL 246 (248)
T ss_dssp TTC
T ss_pred CcC
Confidence 864
No 43
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.93 E-value=6.6e-27 Score=208.27 Aligned_cols=167 Identities=20% Similarity=0.285 Sum_probs=139.6
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEec-ccchhhHHhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFA-SDLVLDERQAR 179 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~-~g~~~~~~~~~ 179 (312)
....+..+++.+.+.+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++.+.. +.+.++ +|..+......
T Consensus 57 ~~~~~~~l~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~-~~~l~~~~~~~~~~~~~~ 135 (292)
T 2o4j_A 57 PLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDD-MSWDCGSQDYKYDVTDVS 135 (292)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTT-TEEECSSGGGEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCCC-CeEEecCCCeEEcHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999866544 478887 47666665554
Q ss_pred hcccc-hhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeec
Q psy11505 180 ECGFS-EIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLA 255 (312)
Q Consensus 180 ~~~~~-~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (312)
..+.. ++++.+. ..+.+|++|++|| +|+|||+||
T Consensus 136 ~~g~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------~lLkAIvLf 173 (292)
T 2o4j_A 136 KAGHTLELIEPLIKFQVGLKKLNLHEEEH------------------------------------------VLLMAICIV 173 (292)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTCCCHHHH------------------------------------------HHHHHHHHS
T ss_pred hcCCcHHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHHh
Confidence 44554 5555554 4455999999999 999999999
Q ss_pred CCCCc-ccchHHHHHHHHHHHHHhHhHHHHH--------hh--------------------hhcccc--CCccchhHHHH
Q psy11505 256 NSDVK-LDEFSSLKKFRNSILSSLGDCIYVL--------RF--------------------WSTVHK--DGKVLMNKLFV 304 (312)
Q Consensus 256 ~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------~~--------------------~~~~~~--~~~~~~~~~~~ 304 (312)
|||++ |++.+.|+++|++|+.+|.+|+..+ || +++.++ .|.+++++|+.
T Consensus 174 npd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~ 253 (292)
T 2o4j_A 174 SPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVL 253 (292)
T ss_dssp CTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTTSCHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCChhHHHH
Confidence 99998 9999999999999999999999764 22 444566 45889999999
Q ss_pred HHHhhh
Q psy11505 305 EMLEAY 310 (312)
Q Consensus 305 ~~~~~~ 310 (312)
|||++.
T Consensus 254 Eml~~~ 259 (292)
T 2o4j_A 254 EVFGNE 259 (292)
T ss_dssp HHHCCC
T ss_pred HHHcCC
Confidence 999864
No 44
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.93 E-value=1.5e-26 Score=199.62 Aligned_cols=162 Identities=19% Similarity=0.264 Sum_probs=130.5
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~ 180 (312)
....+..+++|....+..+|+|||++|+|.+|+.+||++|||++|+++++++.|+++..... ++|..+..+....
T Consensus 40 ~~~~~~~~~~~~~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~ 114 (232)
T 1osh_A 40 AEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP-----SGHSDLLEERIRN 114 (232)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCccC-----CCCceecHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999998754422 2344444443333
Q ss_pred cccc-hhhhhh---cccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 181 CGFS-EIYQQV---KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 181 ~~~~-~~~~~i---~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
.+.. ++.+.+ ...+.+|++|++|| ++++||+|||
T Consensus 115 ~~~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkaivL~~ 152 (232)
T 1osh_A 115 SGISDEYITPMFSFYKSIGELKMTQEEY------------------------------------------ALLTAIVILS 152 (232)
T ss_dssp SSCCTTTHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCCHHHH------------------------------------------HHHHHHHHhC
Confidence 3432 344444 44455999999999 9999999999
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hhccccCCccchhHHHHHHHhh
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WSTVHKDGKVLMNKLFVEMLEA 309 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
||++ |+++..|+++|++|+.+|.+|+..+ || +++.+. |.+|+++|+.||++.
T Consensus 153 pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~k~-~~~~~~~Ll~Em~~~ 231 (232)
T 1osh_A 153 PDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV-NDHKFTPLLCEIWDV 231 (232)
T ss_dssp TTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH-TTCCCCHHHHHHHTC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHhcC
Confidence 9998 9999999999999999999999765 33 344565 799999999999987
Q ss_pred h
Q psy11505 310 Y 310 (312)
Q Consensus 310 ~ 310 (312)
|
T Consensus 232 ~ 232 (232)
T 1osh_A 232 Q 232 (232)
T ss_dssp -
T ss_pred C
Confidence 5
No 45
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.93 E-value=1e-26 Score=208.16 Aligned_cols=166 Identities=15% Similarity=0.235 Sum_probs=142.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~ 180 (312)
....+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++.+.. +.+++++|..++++....
T Consensus 114 ~~~~~~~l~el~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~ 192 (310)
T 1z5x_E 114 AEERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAET-DSILFATNQPYTRESYTV 192 (310)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTT-TEEECTTSCEECHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CeEEeCCCccccHHHHHh
Confidence 4567899999999999999999999999999999999999999999999999999998754 489999998887776655
Q ss_pred cccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 181 CGFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 181 ~~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
.+..++++.+..+ +.+|++|++|| ++++||+|||
T Consensus 193 ~g~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------alLkAIvLf~- 229 (310)
T 1z5x_E 193 AGMGDTVEDLLRFCRHMCAMKVDNAEY------------------------------------------ALLTAIVIFS- 229 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTCCHHHH------------------------------------------HHHHHHHHTC-
T ss_pred cchhHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHHcC-
Confidence 6666666666544 44999999999 9999999997
Q ss_pred CCc-ccchHHHHHHHHHHHHHhHhHHHHH-------hh--------------------hhccccCCccchhHHHHHHHhh
Q psy11505 258 DVK-LDEFSSLKKFRNSILSSLGDCIYVL-------RF--------------------WSTVHKDGKVLMNKLFVEMLEA 309 (312)
Q Consensus 258 ~~~-l~~~~~~~~~~~~~~~~l~~~~~~~-------~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
|++ |++.+.|+++|++|+.+|.+|+..+ || +++.++.|. ++++|+.|||++
T Consensus 230 d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl~Lp~LR~l~~~~~e~l~~~~~~~~-~~~~Ll~Eml~~ 308 (310)
T 1z5x_E 230 ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLTELRTLGNMNSETCFSLKLKNR-KVPSFLEEIWDV 308 (310)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHTC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHcC
Confidence 887 9999999999999999999999654 32 444566664 999999999997
Q ss_pred hc
Q psy11505 310 YL 311 (312)
Q Consensus 310 ~~ 311 (312)
++
T Consensus 309 ~~ 310 (310)
T 1z5x_E 309 VS 310 (310)
T ss_dssp C-
T ss_pred CC
Confidence 63
No 46
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.93 E-value=1e-26 Score=204.81 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=136.8
Q ss_pred CCchhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHh
Q psy11505 98 SDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQ 177 (312)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~ 177 (312)
.......|..+....+..+..+|+|||++|+|.+|+.+||++|||++|+++++++.|+++.+.+. .+.++++.......
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~-~~~~~~~~~~~~~~ 149 (273)
T 3vi8_A 71 KEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGM-LVAYGNGFITREFL 149 (273)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETTEE-EETTTTEEEEHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-eeeeCCCccchHHH
Confidence 34456679999999999999999999999999999999999999999999999999998876543 44445554443322
Q ss_pred -hhhcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCcee
Q psy11505 178 -ARECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLV 253 (312)
Q Consensus 178 -~~~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (312)
....+..++++.+.. .+.+|++|++|| +|+|||+
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~L~ld~~E~------------------------------------------alLkAiv 187 (273)
T 3vi8_A 150 KSLRKPFCDIMEPKFDFAMKFNALELDDSDI------------------------------------------SLFVAAI 187 (273)
T ss_dssp HHSCTTTHHHHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhCCCHHHH------------------------------------------HHHHHHH
Confidence 222334455554444 455999999999 9999999
Q ss_pred ecCCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hh-ccccCCccchhHHHHH
Q psy11505 254 LANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WS-TVHKDGKVLMNKLFVE 305 (312)
Q Consensus 254 l~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~-~~~~~~~~~~~~~~~~ 305 (312)
|||||++ |.++++|+++|++|+.+|.+|+..+ || ++ +++..|.+|+++|+.|
T Consensus 188 Lf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~~~~~~~Ll~E 267 (273)
T 3vi8_A 188 ICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQE 267 (273)
T ss_dssp HSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHH
T ss_pred HhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccHHHHH
Confidence 9999998 9999999999999999999999876 22 22 3456899999999999
Q ss_pred HHhh
Q psy11505 306 MLEA 309 (312)
Q Consensus 306 ~~~~ 309 (312)
|+..
T Consensus 268 mf~d 271 (273)
T 3vi8_A 268 IYRD 271 (273)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9953
No 47
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.93 E-value=1.2e-26 Score=208.00 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=135.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhhc
Q psy11505 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC 181 (312)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~ 181 (312)
...+..+++...+.+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++.+..+ .+.+++ ..+..... ..
T Consensus 119 ~~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~-~~l~~~-~~~~~~~~-~~ 195 (316)
T 1nrl_A 119 FSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETG-TWECGR-LSYCLEDT-AG 195 (316)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTTT-EEEETT-EEEEECCC-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-eEEECC-EeecHHHH-hc
Confidence 5578999999999999999999999999999999999999999999999999999876554 677655 44444333 23
Q ss_pred ccc-hhhhhh---cccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 182 GFS-EIYQQV---KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 182 ~~~-~~~~~i---~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
+.. ++++.+ ...+.+|++|++|| +|+|||+||||
T Consensus 196 g~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------alLkAIvLfnp 233 (316)
T 1nrl_A 196 GFQQLLLEPMLKFHYMLKKLQLHEEEY------------------------------------------VLMQAISLFSP 233 (316)
T ss_dssp CHHHHTTSHHHHHHHHHHHTCCCHHHH------------------------------------------HHHHHHHHTCT
T ss_pred cccHHHHHHHHHHHHHHHHhCCCHHHH------------------------------------------HHHHHHHHhCC
Confidence 333 444444 44455999999999 99999999999
Q ss_pred CCc-ccchHHHHHHHHHHHHHhHhHHHHH--------hh--------------------hhccccCCccchhHHHHHHHh
Q psy11505 258 DVK-LDEFSSLKKFRNSILSSLGDCIYVL--------RF--------------------WSTVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 258 ~~~-l~~~~~~~~~~~~~~~~l~~~~~~~--------~~--------------------~~~~~~~~~~~~~~~~~~~~~ 308 (312)
|++ |++...|+++|++|+.+|.+|+..+ || +++.+..|. |+++||.|||+
T Consensus 234 d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~kLLl~Lp~LR~l~~~~~e~l~~~k~~~~-~i~~Ll~Eml~ 312 (316)
T 1nrl_A 234 DRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHP-FATPLMQELFG 312 (316)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHc
Confidence 998 9999999999999999999999764 22 444566777 99999999998
Q ss_pred hh
Q psy11505 309 AY 310 (312)
Q Consensus 309 ~~ 310 (312)
++
T Consensus 313 ~~ 314 (316)
T 1nrl_A 313 IT 314 (316)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 48
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.93 E-value=4e-26 Score=203.97 Aligned_cols=167 Identities=20% Similarity=0.298 Sum_probs=136.1
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecc-cchhhHHhhh
Q psy11505 101 TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFAS-DLVLDERQAR 179 (312)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~-g~~~~~~~~~ 179 (312)
....+..++++..+.+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|++ +....+.+.+++ |..+......
T Consensus 100 ~~~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~-~~~~~~~~l~~~~~~~~~~~~~~ 178 (302)
T 2hc4_A 100 RLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQS-FSLEDMSWSCGGPDFKYCINDVT 178 (302)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGT-EETTTTEEECSSSTTEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHH-hccCCCeEEecCCCeeecHHHHH
Confidence 35668999999999999999999999999999999999999999999999999965 444555677764 4444444443
Q ss_pred hccc-chhhhhh---cccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeec
Q psy11505 180 ECGF-SEIYQQV---KHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLA 255 (312)
Q Consensus 180 ~~~~-~~~~~~i---~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (312)
..+. .++++.+ ...+++|++|++|| +|+|||+||
T Consensus 179 ~~g~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------alLkAIvLf 216 (302)
T 2hc4_A 179 KAGHTLELLEPLVKFQVGLKKLKLHEEEH------------------------------------------VLLMAICLL 216 (302)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHhcCCHHHH------------------------------------------HHHHHHHHh
Confidence 4444 3444444 44455999999999 999999999
Q ss_pred CCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hhccccCCc--cchhHHHHHH
Q psy11505 256 NSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WSTVHKDGK--VLMNKLFVEM 306 (312)
Q Consensus 256 ~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~~~~~~~~--~~~~~~~~~~ 306 (312)
|||++ |++++.|+++|++|+.+|.+||..+ || +++.++.|. +++++|+.||
T Consensus 217 npd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em 296 (302)
T 2hc4_A 217 SPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEV 296 (302)
T ss_dssp CSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccHHHHHH
Confidence 99998 9999999999999999999999775 33 444566655 8999999999
Q ss_pred Hhhh
Q psy11505 307 LEAY 310 (312)
Q Consensus 307 ~~~~ 310 (312)
+++.
T Consensus 297 ~~~~ 300 (302)
T 2hc4_A 297 FGSE 300 (302)
T ss_dssp SSSC
T ss_pred HcCC
Confidence 9875
No 49
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.92 E-value=1.9e-26 Score=199.53 Aligned_cols=167 Identities=24% Similarity=0.367 Sum_probs=141.5
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhh
Q psy11505 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAR 179 (312)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~ 179 (312)
.+...+.++.+++.+++..+++|+|++|+|..|+.+||+.|||++|+++++|+.|+++.+.. +.+.+++|..++.....
T Consensus 38 ~~~~~~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~~-~~~~~~~g~~~~~~~~~ 116 (237)
T 1pzl_A 38 KKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK-DVLLLGNDYIVPRHCPE 116 (237)
T ss_dssp SCBCCHHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTSS-SEEECTTSCEEESSCGG
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhccC-CceeecCCcccCccchh
Confidence 44567899999999999999999999999999999999999999999999999999998854 47888888776544332
Q ss_pred hcccch----hhhhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeec
Q psy11505 180 ECGFSE----IYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLA 255 (312)
Q Consensus 180 ~~~~~~----~~~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (312)
..+..+ +++.+...+.+|++|++|| ++++||++|
T Consensus 117 ~~~~~~~~~~~~~~l~~~l~~L~ld~~E~------------------------------------------~~L~ai~l~ 154 (237)
T 1pzl_A 117 LAEMSRVSIRILDELVLPFQELQIDDNEY------------------------------------------AYLKAIIFF 154 (237)
T ss_dssp GGGGHHHHHHHHHHTHHHHHHHTCCHHHH------------------------------------------HHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCCHHHH------------------------------------------HHHHHHHHh
Confidence 223333 3445556666999999999 999999999
Q ss_pred CCCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hhccccCCccchhHHHHHHHh
Q psy11505 256 NSDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WSTVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 256 ~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~~~~~~~~~~~~~~~~~~~~ 308 (312)
+||++ +++.+.++++|+++..+|.+|+..+ || +++.+++|.+++++|+.|||+
T Consensus 155 ~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~l~~em~~ 234 (237)
T 1pzl_A 155 DPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLL 234 (237)
T ss_dssp CTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHT
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCcHHHHHHHHHc
Confidence 99998 9999999999999999999999643 32 455688999999999999998
Q ss_pred h
Q psy11505 309 A 309 (312)
Q Consensus 309 ~ 309 (312)
+
T Consensus 235 ~ 235 (237)
T 1pzl_A 235 G 235 (237)
T ss_dssp T
T ss_pred C
Confidence 6
No 50
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.92 E-value=3.5e-25 Score=194.72 Aligned_cols=162 Identities=16% Similarity=0.205 Sum_probs=128.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccch-hhHHhhhh-
Q psy11505 103 QTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLV-LDERQARE- 180 (312)
Q Consensus 103 ~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~-~~~~~~~~- 180 (312)
..+..........+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.|++..+ +.+++++|.. ++++....
T Consensus 73 ~~~~~c~~~~~~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~---~~~~~~~g~~~~~~~~~~~~ 149 (269)
T 3u9q_A 73 RIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---DGVLISEGQGFMTREFLKSL 149 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET---TEEEETTTTEEEEHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCC---CCeEEeCCCccccHHHHHHh
Confidence 334444444445577899999999999999999999999999999999999977543 3577777654 45544332
Q ss_pred -cccchhhhhhc---ccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 181 -CGFSEIYQQVK---HSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 181 -~~~~~~~~~i~---~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
.+..++++.+. ..+.+|++|++|| ++++||+|||
T Consensus 150 ~~~~~~~~~~l~~~~~~l~~L~ld~~E~------------------------------------------alLkAIvLfn 187 (269)
T 3u9q_A 150 RKPFGDFMEPKFEFAVKFNALELDDSDL------------------------------------------AIFIAVIILS 187 (269)
T ss_dssp CTTGGGSSHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHHHhhcCCHHHH------------------------------------------HHHHHHHHhC
Confidence 34445555444 4455999999999 9999999999
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH------hh--------------------hh-ccccCCccchhHHHHHHHh
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL------RF--------------------WS-TVHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~------~~--------------------~~-~~~~~~~~~~~~~~~~~~~ 308 (312)
||++ |+++++|+++|++++.+|.+|+..+ || +. +++..|.+|+++||.|||+
T Consensus 188 pd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~Lp~LR~i~~~~~~~l~~~k~~~~~~~~~~Ll~Em~~ 267 (269)
T 3u9q_A 188 GDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYK 267 (269)
T ss_dssp TTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHS
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCCCcCHHHHHHHh
Confidence 9998 9999999999999999999999765 22 32 3456889999999999997
Q ss_pred h
Q psy11505 309 A 309 (312)
Q Consensus 309 ~ 309 (312)
+
T Consensus 268 ~ 268 (269)
T 3u9q_A 268 D 268 (269)
T ss_dssp C
T ss_pred h
Confidence 4
No 51
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.91 E-value=1e-24 Score=183.75 Aligned_cols=143 Identities=20% Similarity=0.293 Sum_probs=125.3
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhh
Q psy11505 100 PTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAR 179 (312)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~ 179 (312)
+....|..+++.....+..+|+|||++|+|.+|+.+||++|+|++|+++++++.|+++... .+.+.+++|..++.+...
T Consensus 17 ~~~~~~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~-~~~~~~~~g~~~~~~~~~ 95 (199)
T 3cqv_A 17 SGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAK-ERTVTFLSGKKYSVDDLH 95 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEETT-TTEEECTTSCEEEHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCC-CCeEEecCCCeecHHHHH
Confidence 4667899999999999999999999999999999999999999999999999999876444 458899999888777665
Q ss_pred hcccchhhhhhcc---cCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 180 ECGFSEIYQQVKH---SGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 180 ~~~~~~~~~~i~~---~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
..+..++++.+.. .+.+|++|++|| +++|||+|||
T Consensus 96 ~~~~~~~~~~i~~~~~~~~~L~ld~~E~------------------------------------------~lLkaivL~~ 133 (199)
T 3cqv_A 96 SMGAGDLLNSMFEFSEKLNALQLSDEEM------------------------------------------SLFTAVVLVS 133 (199)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCCCHHHH------------------------------------------HHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHHhCCCHHHH------------------------------------------HHHHHHHHhc
Confidence 5566666655544 444999999999 9999999999
Q ss_pred CCCc-ccchHHHHHHHHHHHHHhHhHHHHH
Q psy11505 257 SDVK-LDEFSSLKKFRNSILSSLGDCIYVL 285 (312)
Q Consensus 257 ~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~ 285 (312)
||++ +++++.|+++|++++.+|.+|+..+
T Consensus 134 pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~ 163 (199)
T 3cqv_A 134 ADRSGIENVNSVEALQETLIRALRTLIMKN 163 (199)
T ss_dssp SCCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 9999999999999999999999765
No 52
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.90 E-value=1.1e-24 Score=188.70 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCee---EecccchhhHHhhhh--c
Q psy11505 107 SLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKI---RFASDLVLDERQARE--C 181 (312)
Q Consensus 107 ~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l---~~~~g~~~~~~~~~~--~ 181 (312)
++.++.+..+..+|+|||++|+|.+|+.+||++|||++|+++++++.|+++.+..+ .+ .+++|..++++.... .
T Consensus 45 ~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 123 (243)
T 3up3_A 45 DIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSG-SWTTPTLGESSEVSINMFDQLNA 123 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTT-EECCTTSCTTCCEEGGGGGGSCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCC-eeeecccCCCccccHHHHhhhcc
Confidence 67899999999999999999999999999999999999999999999999888766 44 235665555443322 3
Q ss_pred ccch-hhhhh---cccCcc-CCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecC
Q psy11505 182 GFSE-IYQQV---KHSGSL-DGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256 (312)
Q Consensus 182 ~~~~-~~~~i---~~~~~~-L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 256 (312)
+..+ +++.+ ...+.+ |++|++|| ++++||+|||
T Consensus 124 g~~~~~~~~l~~~~~~~~~~L~ld~~E~------------------------------------------alLkAivLfs 161 (243)
T 3up3_A 124 DVRSEQKMRFLQFFKIFHEDIRSNDLVI------------------------------------------SMIMLIVLFS 161 (243)
T ss_dssp TTHHHHHHHHHHHHHTSCHHHHTCHHHH------------------------------------------HHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCHHHH------------------------------------------HHHHHHhhcC
Confidence 4443 33333 344555 99999999 9999999999
Q ss_pred CCCcccch---HHHHHHHHHHHHHhHhHHHHH-------hh-------------------hhccccCCccchhHHHHHHH
Q psy11505 257 SDVKLDEF---SSLKKFRNSILSSLGDCIYVL-------RF-------------------WSTVHKDGKVLMNKLFVEML 307 (312)
Q Consensus 257 ~~~~l~~~---~~~~~~~~~~~~~l~~~~~~~-------~~-------------------~~~~~~~~~~~~~~~~~~~~ 307 (312)
||.+|+++ .+|+++|++++.+|.+|+..+ || +++.+ .+..++++|+.||+
T Consensus 162 p~~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~~~e~lf~~k-~~~~~~~pLl~E~f 240 (243)
T 3up3_A 162 PRDSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLREISASSGMLFLGT-VNTSEAEPLPREFF 240 (243)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTTTTTS-CCGGGSCHHHHTTS
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcHHHHHh
Confidence 99559876 789999999999999999743 22 22223 56679999999998
Q ss_pred h
Q psy11505 308 E 308 (312)
Q Consensus 308 ~ 308 (312)
+
T Consensus 241 ~ 241 (243)
T 3up3_A 241 K 241 (243)
T ss_dssp C
T ss_pred C
Confidence 6
No 53
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.89 E-value=6.5e-24 Score=184.19 Aligned_cols=141 Identities=22% Similarity=0.307 Sum_probs=111.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhhHHhhhhc
Q psy11505 102 LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC 181 (312)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~~~~~~~~ 181 (312)
...|+.+.+.....+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.|+++.. ..+.+.+++|..+..+.....
T Consensus 64 ~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~-~~~~l~~~~g~~~~~~~~~~~ 142 (245)
T 3n00_A 64 QEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNV-KDQTVMFLSRTTYSLQELGAM 142 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCS-CC--------------CCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEecCCCeecHHHHhhc
Confidence 3678899999999999999999999999999999999999999999999999987444 445788899988776655555
Q ss_pred ccchhhhhhccc---CccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCCC
Q psy11505 182 GFSEIYQQVKHS---GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSD 258 (312)
Q Consensus 182 ~~~~~~~~i~~~---~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (312)
+..++++.+..+ +.+|++|++|| ++++||+|||||
T Consensus 143 ~~~~~~~~i~~~~~~l~~L~ld~~E~------------------------------------------~lLkAIvL~npd 180 (245)
T 3n00_A 143 GMGDLLSAMFDFSEKLNSLALTEEEL------------------------------------------GLFTAVVLVSAD 180 (245)
T ss_dssp TTHHHHHHHHHHHHHHHHTCCCHHHH------------------------------------------HHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHHhCCC
Confidence 566666655544 44999999999 999999999999
Q ss_pred Cc-ccchHHHHHHHHHHHHHhHhHHHHH
Q psy11505 259 VK-LDEFSSLKKFRNSILSSLGDCIYVL 285 (312)
Q Consensus 259 ~~-l~~~~~~~~~~~~~~~~l~~~~~~~ 285 (312)
++ |++.++|+++|++++.+|.+|+..+
T Consensus 181 ~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 208 (245)
T 3n00_A 181 RSGMENSASVEQLQETLLRALRALVLKN 208 (245)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 9999999999999999999999765
No 54
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.87 E-value=3.8e-23 Score=178.57 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCCccccCChHHHHHHHHHHHHHHHHHhhhhhcccCCCCeeEecccchhh--HH--hhhhcc
Q psy11505 107 SLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLD--ER--QARECG 182 (312)
Q Consensus 107 ~~~~~~~~~l~~~iewak~lp~F~~L~~~DQi~LLK~~~~~~~~L~~a~rs~~~~~~~l~~~~g~~~~--~~--~~~~~~ 182 (312)
++.++.+..+..+|+|||++|+|.+|+.+||++|||++|+|+++++.|+++.+... .+.+++|..+. .. .....+
T Consensus 45 ~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~ 123 (244)
T 3gyt_A 45 DILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKG-VWQTPVDGHSQISFNMFDKLRPD 123 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTT-EECCTTSTTCCEEGGGGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcccCC-eEeecCCcccchhHHHHHHhhhc
Confidence 56788888899999999999999999999999999999999999999999776655 67776653111 10 000011
Q ss_pred -----cchhhhhhcccCccCCCCccccCCceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceecCCCCceeecCC
Q psy11505 183 -----FSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANS 257 (312)
Q Consensus 183 -----~~~~~~~i~~~~~~L~ld~~E~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (312)
..++.+.++.+...++.++.|| ++++||+||||
T Consensus 124 ~~~~~~~~~~~~~~~f~~~l~~~~~E~------------------------------------------alLkAivLfsp 161 (244)
T 3gyt_A 124 IKDTQKKGFLHFFNLLHSDVRKNDLAI------------------------------------------DIIVLMVLFDS 161 (244)
T ss_dssp THHHHHHHHHHHHHHSCHHHHTCHHHH------------------------------------------HHHHHHHHSCT
T ss_pred chhhHHHHHHHHHHHHHHHHHHhHHHH------------------------------------------HHHHHHHHHhc
Confidence 1234455666666666778899 99999999999
Q ss_pred CCc-cc---chHHHHHHHHHHHHHhHhHHHHH-------hh------------hhc------cccCCccchhHHHHHHHh
Q psy11505 258 DVK-LD---EFSSLKKFRNSILSSLGDCIYVL-------RF------------WST------VHKDGKVLMNKLFVEMLE 308 (312)
Q Consensus 258 ~~~-l~---~~~~~~~~~~~~~~~l~~~~~~~-------~~------------~~~------~~~~~~~~~~~~~~~~~~ 308 (312)
|++ |. ++.+|+++|++++.+|.+|+..+ || +.. .+..+..++++|+.||++
T Consensus 162 Dr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~~~~~lf~~~~~~~~~~pLl~Eif~ 241 (244)
T 3gyt_A 162 KREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVTLFLGAGNTTEAASLPKEFFA 241 (244)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHTTTTTTTTSCCCTTSCTTGGGTSC
T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCcHHHHHhC
Confidence 998 98 68899999999999999999754 22 111 123445679999999987
Q ss_pred h
Q psy11505 309 A 309 (312)
Q Consensus 309 ~ 309 (312)
.
T Consensus 242 ~ 242 (244)
T 3gyt_A 242 T 242 (244)
T ss_dssp C
T ss_pred c
Confidence 4
No 55
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.62 E-value=4.1e-17 Score=119.37 Aligned_cols=55 Identities=80% Similarity=1.429 Sum_probs=48.8
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccccccccccCC
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRN 55 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~~~~~~~ 55 (312)
+..|+|..+++|.|++..|+.||+|||+|||+|||++++||.+|+++++.+....
T Consensus 38 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~r~k~~~~ 92 (98)
T 1lo1_A 38 NIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYKRR 92 (98)
T ss_dssp TCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCTTCCCCCC--
T ss_pred cCccccCccccccccccccccccchhHHHHhHcCCCHHHeecccccCcccccCCC
Confidence 3579999999999999999999999999999999999999999998887765443
No 56
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.60 E-value=1.2e-16 Score=112.06 Aligned_cols=45 Identities=42% Similarity=0.891 Sum_probs=40.9
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~ 45 (312)
+..|+|+.+++|.|++..|+.||+|||+|||+|||++++||.+|+
T Consensus 34 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 34 NHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp TCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred ccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 357999999999999999999999999999999999999999874
No 57
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.60 E-value=2.3e-16 Score=113.42 Aligned_cols=50 Identities=54% Similarity=1.038 Sum_probs=45.0
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQ 50 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~~ 50 (312)
++.|+|..+++|.|++..|+.||+|||+|||+|||++++||.++...++.
T Consensus 34 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~~~r~ 83 (89)
T 1cit_A 34 SAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 83 (89)
T ss_dssp TCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGTTCCS
T ss_pred cceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeecccccCccc
Confidence 35799999999999999999999999999999999999999988665543
No 58
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.60 E-value=1.3e-16 Score=116.89 Aligned_cols=50 Identities=48% Similarity=0.991 Sum_probs=39.2
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQ 50 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~~ 50 (312)
++.|+|+.+++|.|++..|+.||+|||+|||+|||++++||.+|++.+.+
T Consensus 37 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~~ 86 (99)
T 1ynw_B 37 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDR 86 (99)
T ss_dssp TCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC---------
T ss_pred ccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhcccccccc
Confidence 45799999999999999999999999999999999999999999876543
No 59
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.60 E-value=1.6e-16 Score=113.24 Aligned_cols=46 Identities=50% Similarity=1.029 Sum_probs=43.2
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 46 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~ 46 (312)
++.|+|+.+++|.|++..|+.||+|||+|||+|||++++||.+|++
T Consensus 39 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp TCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred ccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 4579999999999999999999999999999999999999999875
No 60
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.59 E-value=2e-16 Score=113.66 Aligned_cols=47 Identities=40% Similarity=0.880 Sum_probs=43.7
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~ 47 (312)
++.|+|+.+++|.|++..|+.||+|||+|||+|||++++||.+|++.
T Consensus 41 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 87 (89)
T 2ebl_A 41 NLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGPS 87 (89)
T ss_dssp TCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCCC
T ss_pred ccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCCCC
Confidence 45799999999999999999999999999999999999999998753
No 61
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.59 E-value=2.2e-16 Score=114.49 Aligned_cols=48 Identities=42% Similarity=0.868 Sum_probs=42.0
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGG 48 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~ 48 (312)
++.|+|+.+++|.|++..|+.||+|||+|||+|||++++||.+|++.+
T Consensus 44 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 91 (93)
T 2han_A 44 DLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGIH 91 (93)
T ss_dssp TCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC----
T ss_pred ccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccCccc
Confidence 457999999999999999999999999999999999999999998654
No 62
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.58 E-value=2.8e-16 Score=112.38 Aligned_cols=47 Identities=51% Similarity=0.912 Sum_probs=41.0
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~ 47 (312)
+..|+|..+++|.|++..|+.||+|||+|||+|||++++||.+|++.
T Consensus 38 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 84 (86)
T 1dsz_A 38 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKK 84 (86)
T ss_dssp TCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC----
T ss_pred ccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhccccc
Confidence 35799999999999999999999999999999999999999998764
No 63
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.56 E-value=6.7e-16 Score=115.68 Aligned_cols=51 Identities=57% Similarity=1.066 Sum_probs=46.9
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~~~ 51 (312)
++.|.|+.+++|.|++..|+.||+|||+|||+|||++++||.+|+++++.+
T Consensus 43 ~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~~~r~~ 93 (113)
T 2a66_A 43 NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNK 93 (113)
T ss_dssp TCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCCSSCCT
T ss_pred cccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccccCCCCC
Confidence 357999999999999999999999999999999999999999998877654
No 64
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.54 E-value=8.6e-16 Score=109.21 Aligned_cols=45 Identities=56% Similarity=1.156 Sum_probs=35.2
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~ 45 (312)
+..|+|+.+++|.|++..|+.||+|||+|||+|||++++||.+|.
T Consensus 38 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 38 HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred ccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 357999999999999999999999999999999999999999874
No 65
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.53 E-value=1.2e-15 Score=110.91 Aligned_cols=47 Identities=40% Similarity=0.923 Sum_probs=40.9
Q ss_pred cee-EcCCCCCcccccccccccccCchhHHHHhccccccccccccccc
Q psy11505 2 IEY-TCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGG 48 (312)
Q Consensus 2 ~~Y-~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~ 48 (312)
..| .|..+++|.|++..|+.||+|||+|||+|||++++||.+|++..
T Consensus 42 ~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 89 (94)
T 1a6y_A 42 IQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKR 89 (94)
T ss_dssp CCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC----
T ss_pred cceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcCcCc
Confidence 468 59999999999999999999999999999999999999997654
No 66
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.51 E-value=2.6e-15 Score=113.10 Aligned_cols=48 Identities=44% Similarity=0.866 Sum_probs=37.1
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGG 48 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~ 48 (312)
+..|.|+++++|.|++..|+.||+|||+|||+|||++++||.+|+..+
T Consensus 63 ~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~k~ 110 (117)
T 4hn5_A 63 QHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKG 110 (117)
T ss_dssp CCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC---------
T ss_pred CCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhcccccccc
Confidence 357999999999999999999999999999999999999999886544
No 67
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.51 E-value=2.1e-15 Score=109.04 Aligned_cols=49 Identities=43% Similarity=0.832 Sum_probs=41.8
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~ 49 (312)
+..|.|..+++|.|++..|+.||+|||+|||+|||++++||.+|+..+.
T Consensus 36 ~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~~~ 84 (90)
T 3g9m_A 36 QHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGI 84 (90)
T ss_dssp CCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC-----
T ss_pred CCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhccccccccc
Confidence 3579999999999999999999999999999999999999999865543
No 68
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.50 E-value=1.4e-15 Score=113.72 Aligned_cols=47 Identities=40% Similarity=0.842 Sum_probs=42.7
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~ 47 (312)
+..|+|+.+++|.|++..|+.||+|||+|||+|||++++|+.+|+..
T Consensus 40 ~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~q 86 (110)
T 1kb2_A 40 KALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQ 86 (110)
T ss_dssp TCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHHH
T ss_pred ccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHHHh
Confidence 35799999999999999999999999999999999999998887543
No 69
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.48 E-value=4e-15 Score=112.89 Aligned_cols=46 Identities=35% Similarity=0.687 Sum_probs=42.7
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhccccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 46 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~ 46 (312)
+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.+|+.
T Consensus 42 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~ 87 (119)
T 2han_B 42 SAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQC 87 (119)
T ss_dssp TCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHH
T ss_pred ccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchhhh
Confidence 3579999999999999999999999999999999999999998764
No 70
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.48 E-value=6.9e-15 Score=104.57 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=38.8
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLD 43 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~ 43 (312)
++.|+|+.+++|.|++..|++||+|||+|||+|||+...+...
T Consensus 36 ~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~~~ 78 (87)
T 2lze_A 36 DLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGGSM 78 (87)
T ss_dssp SCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCCCC
T ss_pred CCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCccc
Confidence 4679999999999999999999999999999999998866544
No 71
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.45 E-value=1.3e-14 Score=107.37 Aligned_cols=45 Identities=40% Similarity=0.899 Sum_probs=37.1
Q ss_pred CceeEcCCCCCcccccccccccccCchhHHHHhcccccccccccc
Q psy11505 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45 (312)
Q Consensus 1 ~~~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~ 45 (312)
+..|+|+.+++|.|++..|+.||+|||+|||+|||++++++..+.
T Consensus 41 ~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~ 85 (105)
T 1r4i_A 41 KQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKL 85 (105)
T ss_dssp CCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC------
T ss_pred cCceeeccCCccccCccccccchhchHHHHHhhhcccchhhhccc
Confidence 357999999999999999999999999999999999999988764
No 72
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.45 E-value=6.1e-15 Score=108.97 Aligned_cols=47 Identities=38% Similarity=0.751 Sum_probs=43.2
Q ss_pred eeEcCCCCCcccccccccccccCchhHHHHhcccccccccccccccc
Q psy11505 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49 (312)
Q Consensus 3 ~Y~C~~~~~C~i~~~~R~~Cr~CRf~KCl~vGM~~eaVq~~r~~~~~ 49 (312)
.|.|..+++|.|++..|+.||+|||+|||+|||++++||.++.+..+
T Consensus 39 ~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~~~~k 85 (103)
T 2nll_B 39 SYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 85 (103)
T ss_dssp GCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHHHHHH
T ss_pred hhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhhhHHh
Confidence 69999999999999999999999999999999999999998865443
No 73
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=98.91 E-value=3.2e-10 Score=80.84 Aligned_cols=39 Identities=51% Similarity=1.111 Sum_probs=34.5
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhcccce
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
...|.||++.++|+||||.+|+||++||+|+|+....|.
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~ 42 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYT 42 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCC
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhccccee
Confidence 457999999999999999999999999999998877664
No 74
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=98.89 E-value=5.1e-10 Score=81.85 Aligned_cols=40 Identities=53% Similarity=1.066 Sum_probs=35.2
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.|||+.++|+||||.+|+||++||+|+|+....|.+
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 42 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 42 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCC
T ss_pred CCCCceeCCCCcceeeCccchHHHHHHHHhhhcccccccc
Confidence 4579999999999999999999999999999988777743
No 75
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=98.89 E-value=4.1e-10 Score=80.05 Aligned_cols=40 Identities=53% Similarity=1.066 Sum_probs=36.2
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.||++.++|+||||.+|++|++||+|+|+....|.+
T Consensus 5 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 44 (85)
T 1dsz_B 5 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC 44 (85)
T ss_dssp CEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceee
Confidence 4579999999999999999999999999999988777743
No 76
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=98.89 E-value=4.9e-10 Score=78.36 Aligned_cols=38 Identities=47% Similarity=1.095 Sum_probs=34.7
Q ss_pred eeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 208 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
.|.||++.++|+||||.+|++|++||+|+|+....|.+
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 39 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 39 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCC
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCccc
Confidence 59999999999999999999999999999988776643
No 77
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=98.88 E-value=4.3e-10 Score=79.76 Aligned_cols=38 Identities=66% Similarity=1.200 Sum_probs=35.2
Q ss_pred ceeeeeCCCCcccccccccchhHHHHHHHHhhhcccce
Q psy11505 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244 (312)
Q Consensus 207 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
..|.||++.++|+||||.+|++|++||+|+|+....|.
T Consensus 5 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~ 42 (84)
T 1hcq_A 5 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYM 42 (84)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCC
T ss_pred CcCcEECCCCCCeeeCccchHHhhhhhhhccccccccc
Confidence 57999999999999999999999999999998877774
No 78
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=98.87 E-value=5.6e-10 Score=80.03 Aligned_cols=38 Identities=58% Similarity=1.039 Sum_probs=34.8
Q ss_pred ceeeeeCCCCcccccccccchhHHHHHHHHhhhcccce
Q psy11505 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244 (312)
Q Consensus 207 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
..|.||++.++|+||||.+|++|++||+|+|+....|.
T Consensus 1 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~ 38 (89)
T 1cit_A 1 GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYI 38 (89)
T ss_dssp CCCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCC
T ss_pred CCCeEeCCCCcceEeCccchhhhhhhceeeEEecceee
Confidence 36999999999999999999999999999998877664
No 79
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=98.87 E-value=6.4e-10 Score=79.68 Aligned_cols=40 Identities=48% Similarity=0.952 Sum_probs=36.0
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.||++.++|+||||.+|++|++||+|+|+....|++
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 46 (89)
T 2ebl_A 7 GIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTC 46 (89)
T ss_dssp SCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCC
T ss_pred CCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceec
Confidence 4579999999999999999999999999999987776643
No 80
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=98.87 E-value=5.3e-10 Score=80.84 Aligned_cols=40 Identities=58% Similarity=1.075 Sum_probs=36.0
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.||++.++|+||||.+|++|++||+|+|+....|.+
T Consensus 10 ~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 49 (93)
T 2han_A 10 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC 49 (93)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCc
Confidence 3579999999999999999999999999999988777743
No 81
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=98.86 E-value=5.8e-10 Score=80.37 Aligned_cols=40 Identities=50% Similarity=1.029 Sum_probs=36.5
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
+..|.||++.++|+||||.+|++|++||+|+|+....|++
T Consensus 2 ~~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C 41 (90)
T 3g9m_A 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLC 41 (90)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCC
T ss_pred CCcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeC
Confidence 3579999999999999999999999999999998887743
No 82
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=98.86 E-value=6.6e-10 Score=81.10 Aligned_cols=39 Identities=79% Similarity=1.424 Sum_probs=35.7
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhcccce
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
...|.|||+.++|+||||.+|+||++||+|+|+....|.
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~ 42 (98)
T 1lo1_A 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYS 42 (98)
T ss_dssp CCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCC
T ss_pred CCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccc
Confidence 468999999999999999999999999999998877663
No 83
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=98.84 E-value=8.5e-10 Score=82.25 Aligned_cols=40 Identities=43% Similarity=1.004 Sum_probs=35.9
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.|||+.++|+||||.+|+||++||+|+|.....|++
T Consensus 6 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 45 (110)
T 1kb2_A 6 PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTC 45 (110)
T ss_dssp -CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceee
Confidence 4679999999999999999999999999999998777744
No 84
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=98.82 E-value=1.2e-09 Score=80.62 Aligned_cols=38 Identities=55% Similarity=1.187 Sum_probs=33.9
Q ss_pred ceeeeeCCCCcccccccccchhHHHHHHHHhhhcc--cce
Q psy11505 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYS--GYR 244 (312)
Q Consensus 207 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 244 (312)
..|.|||+.++|+||||.+|+||++||+|+|.... .|.
T Consensus 2 ~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~ 41 (103)
T 2nll_B 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYS 41 (103)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCC
T ss_pred CCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhh
Confidence 57999999999999999999999999999998653 553
No 85
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=98.81 E-value=9.3e-10 Score=81.27 Aligned_cols=40 Identities=48% Similarity=0.991 Sum_probs=36.0
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.||++.++|+||||.+|++|++||||+|.....|.+
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 46 (105)
T 1r4i_A 7 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLC 46 (105)
T ss_dssp CCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceee
Confidence 4679999999999999999999999999999988776643
No 86
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=98.81 E-value=8.3e-10 Score=82.58 Aligned_cols=40 Identities=55% Similarity=1.143 Sum_probs=35.8
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.||++.++|+||||.+|+||++||+|+|.....|.+
T Consensus 9 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C 48 (113)
T 2a66_A 9 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTC 48 (113)
T ss_dssp -CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccc
Confidence 5679999999999999999999999999999988777743
No 87
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=98.81 E-value=1.2e-09 Score=82.78 Aligned_cols=40 Identities=50% Similarity=1.079 Sum_probs=36.2
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.|||+.++|+||||.+|+||++||+|+|.....|.+
T Consensus 8 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C 47 (119)
T 2han_B 8 EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCC 47 (119)
T ss_dssp SCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCC
T ss_pred CCcCeEeCCcCCcceECchhHHhhHHhhhhheEecccccc
Confidence 5679999999999999999999999999999987776643
No 88
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=98.79 E-value=1.1e-09 Score=79.36 Aligned_cols=38 Identities=66% Similarity=1.254 Sum_probs=34.2
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhcccc
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
...|.||++.++|+||||.+|+||++||+|+|+....|
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y 44 (94)
T 1a6y_A 7 VLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQY 44 (94)
T ss_dssp -CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCC
T ss_pred CCcCcEeCCCCcceEeCccchhhhhhehheeeecccce
Confidence 35799999999999999999999999999999876655
No 89
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=98.76 E-value=1.7e-09 Score=81.27 Aligned_cols=40 Identities=53% Similarity=1.051 Sum_probs=35.9
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhccccee
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
...|.||++.++|+||||.+|++|++||||+|+....|.+
T Consensus 29 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C 68 (117)
T 4hn5_A 29 PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLC 68 (117)
T ss_dssp -CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCC
T ss_pred CCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceec
Confidence 3569999999999999999999999999999988887743
No 90
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=98.48 E-value=3.3e-08 Score=92.94 Aligned_cols=41 Identities=51% Similarity=1.038 Sum_probs=37.0
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhcccceec
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQT 246 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
...|.||||.++|+||||.+|+||++||||+|++...|+|.
T Consensus 137 ~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~ 177 (467)
T 3dzy_A 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCR 177 (467)
T ss_dssp CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCS
T ss_pred CCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCC
Confidence 45699999999999999999999999999999988777543
No 91
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=98.44 E-value=6.9e-08 Score=89.64 Aligned_cols=38 Identities=61% Similarity=1.151 Sum_probs=34.8
Q ss_pred CceeeeeCCCCcccccccccchhHHHHHHHHhhhcccc
Q psy11505 206 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY 243 (312)
Q Consensus 206 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
...|.|||+.++|+||||.+|+||++||||+|+....|
T Consensus 50 ~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~ 87 (419)
T 3dzy_D 50 AIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIY 87 (419)
T ss_dssp CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCC
T ss_pred CCcCeECCCcCCCCccCcccchhhhHHHccchhccccc
Confidence 45799999999999999999999999999999876665
No 92
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=72.82 E-value=0.3 Score=34.23 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=16.2
Q ss_pred CcccccccccchhHHHHHHHHhhh
Q psy11505 216 ASGFHYGVASCEACKAFFKRTIQV 239 (312)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~ 239 (312)
+++.||+++ |.+|++||+|++..
T Consensus 14 ~~g~h~c~v-Cgd~asfFRRt~~~ 36 (87)
T 2lze_A 14 RGGKHICAI-CGNNAEDYKHTDMD 36 (87)
T ss_dssp SCCSSSCSS-SSSSSSSCTTTTTS
T ss_pred CCCCEEccC-CCCccceECcccCC
Confidence 456677766 77778889998543
No 93
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=60.05 E-value=0.64 Score=25.07 Aligned_cols=22 Identities=32% Similarity=0.960 Sum_probs=15.9
Q ss_pred CCcccccccccccc--cCchhHHH
Q psy11505 10 NDCEINKRRRKACQ--ACRFQKCL 31 (312)
Q Consensus 10 ~~C~i~~~~R~~Cr--~CRf~KCl 31 (312)
.+|+-...+|.-|+ .|||-|||
T Consensus 7 d~c~~~p~~~~cc~glqcryg~cl 30 (34)
T 1x5v_A 7 DNCVYVPAQNPCCRGLQCRYGKCL 30 (34)
T ss_dssp CEECSCGGGCCBCTTEEEETEEEE
T ss_pred CCCCCCCCCCccceeeeeccCcEE
Confidence 45766666666776 49999997
No 94
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=37.95 E-value=19 Score=21.30 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=18.8
Q ss_pred eeeeeCCCCcc----cccccccchhHHHHHHH
Q psy11505 208 LCLVCGDVASG----FHYGVASCEACKAFFKR 235 (312)
Q Consensus 208 ~c~~~~~~~~~----~~~~~~~~~~~~~~~~~ 235 (312)
.|..|+..+.- -..|..+|++|..+|+.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 35556544321 34688999999998865
No 95
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=36.59 E-value=22 Score=22.95 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=20.6
Q ss_pred ceeeeeCCCCcc----cccccccchhHHHHHHH
Q psy11505 207 RLCLVCGDVASG----FHYGVASCEACKAFFKR 235 (312)
Q Consensus 207 ~~c~~~~~~~~~----~~~~~~~~~~~~~~~~~ 235 (312)
..|..|+..+.- -..|..+|++|..+|+.
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~ 40 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKL 40 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHHH
Confidence 456666654332 45688999999999976
No 96
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=30.91 E-value=5.7 Score=21.01 Aligned_cols=22 Identities=32% Similarity=0.976 Sum_probs=13.5
Q ss_pred CCcccccccccccc---cCchhHHH
Q psy11505 10 NDCEINKRRRKACQ---ACRFQKCL 31 (312)
Q Consensus 10 ~~C~i~~~~R~~Cr---~CRf~KCl 31 (312)
.-|+-|+.....|- .|||-|||
T Consensus 7 dpcpndrpghrtcciglqcrygkcl 31 (33)
T 2ll1_A 7 DPCPNDRPGHRTCCIGLQCRYGKCL 31 (33)
T ss_dssp CBCTTCBTTBCSBCTTEEEETTEEE
T ss_pred CCCCCCCCCceeeEEeeEeecceEe
Confidence 34666665544443 58998886
No 97
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=25.85 E-value=78 Score=22.53 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhCCccccCChHHHHHHHHH
Q psy11505 114 RELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143 (312)
Q Consensus 114 ~~l~~~iewak~lp~F~~L~~~DQi~LLK~ 143 (312)
.++...+++++.+|.|..|+.++...|+..
T Consensus 4 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~ 33 (138)
T 1vp6_A 4 GDFVRNWQLVAAVPLFQKLGPAVLVEIVRA 33 (138)
T ss_dssp HHHHHHHHHHTTCGGGGGCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhChhhhcCCHHHHHHHHHh
Confidence 456678899999999999999988777654
No 98
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=23.35 E-value=40 Score=24.40 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=17.7
Q ss_pred HhhCCccccCChHHHHHHHHH
Q psy11505 123 AKQIPGFTDLSLNDQMRLLQS 143 (312)
Q Consensus 123 ak~lp~F~~L~~~DQi~LLK~ 143 (312)
+..+++|..|+.+||..+.+.
T Consensus 75 ~~~I~Gf~~L~~eDQe~Ikk~ 95 (111)
T 3odc_A 75 ASQLKGFSLLATEDKEALKKQ 95 (111)
T ss_dssp GGGEETGGGSCHHHHHHHHHH
T ss_pred HHhCCChHHCCHHHHHHHHHH
Confidence 345999999999999998763
No 99
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=21.98 E-value=46 Score=24.20 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=18.0
Q ss_pred HhhCCccccCChHHHHHHHHH
Q psy11505 123 AKQIPGFTDLSLNDQMRLLQS 143 (312)
Q Consensus 123 ak~lp~F~~L~~~DQi~LLK~ 143 (312)
+..+++|..|..+||..+.+.
T Consensus 69 ~~~I~G~~~L~~eDQ~~I~~~ 89 (114)
T 1v9x_A 69 VDDVEGIESLRWEDQQKIRKY 89 (114)
T ss_dssp GGGEETTTTSCHHHHHHHHHH
T ss_pred hHHCCChHHCCHHHHHHHHHH
Confidence 556999999999999998763
No 100
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=21.50 E-value=48 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=17.6
Q ss_pred hhCCccccCChHHHHHHHHH
Q psy11505 124 KQIPGFTDLSLNDQMRLLQS 143 (312)
Q Consensus 124 k~lp~F~~L~~~DQi~LLK~ 143 (312)
..+++|.+|..+||..+.+.
T Consensus 89 ~~I~Gfd~L~~eDQekIkk~ 108 (116)
T 3od8_A 89 VEVDGFSELRWDDQQKVKKT 108 (116)
T ss_dssp HHEETGGGSCHHHHHHHHHH
T ss_pred hhCcChHHCCHHHHHHHHHH
Confidence 45899999999999998874
No 101
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=21.48 E-value=53 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=18.2
Q ss_pred HhhCCccccCChHHHHHHHHHH
Q psy11505 123 AKQIPGFTDLSLNDQMRLLQST 144 (312)
Q Consensus 123 ak~lp~F~~L~~~DQi~LLK~~ 144 (312)
+..+++|..|+.+||..+.+..
T Consensus 73 ~~~i~G~~~L~~eDQ~~I~~~i 94 (117)
T 1uw0_A 73 LTELEGWEELEDNEKEQITQHI 94 (117)
T ss_dssp TSSSBSTTTSCHHHHHHHHHHH
T ss_pred hHHCcChHHCCHHHHHHHHHHH
Confidence 3458999999999999987653
Done!