RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11505
(312 letters)
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 177 bits (451), Expect = 2e-52
Identities = 77/338 (22%), Positives = 130/338 (38%), Gaps = 75/338 (22%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS 60
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG +
Sbjct: 171 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVE---- 226
Query: 61 QQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPT--LQTINSLSDLYDRELVC 118
+ + + ++LEA L EP+ T +P+ + ++ D++L
Sbjct: 227 ---STSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFT 283
Query: 119 IIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA 178
++ WAK+IP F++L L+DQ+ LL++ W E+L + ++RS+ I A+ L + A
Sbjct: 284 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSA 342
Query: 179 RECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
G I+ +V EL ++ +
Sbjct: 343 HSAGVGAIFDRVLT----------ELVSKM----------------------RDMQMDKT 370
Query: 239 VYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI--------------- 282
R +VL N D K L + ++ R + +SL
Sbjct: 371 ELGCLR------AIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLL 424
Query: 283 -----------YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
L G ++ +EMLEA
Sbjct: 425 LRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
Score = 79.8 bits (196), Expect = 8e-17
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244
+ +C +CGD +SG HYGV SCE CK FFKRT++ Y
Sbjct: 136 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYT 175
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 153 bits (388), Expect = 2e-45
Identities = 83/291 (28%), Positives = 122/291 (41%), Gaps = 80/291 (27%)
Query: 54 RNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYD 113
+ + + ++ LL+ EPE L + D L + +L DL+D
Sbjct: 4 SHHHHHHLEVLFQGPVN-----ALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFD 58
Query: 114 RELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVL 173
RE+V I WAK IPGF+ LSL+DQM +LQS W E+L L +A RSLP ++ FA DLVL
Sbjct: 59 REIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPL-QDELAFAEDLVL 117
Query: 174 DERQARECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCE-AC-KA 231
DE AR G E+ + +L RRL + + E KA
Sbjct: 118 DEEGARAAGLGELGAALL-----------QLVRRLQALRLERE----------EYVLLKA 156
Query: 232 FFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIY------- 283
L LANSD +++ ++++ R ++ +L +
Sbjct: 157 --------------------LALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGG 196
Query: 284 -----------------------VLRFWSTVHKDGKVLMNKLFVEMLEAYL 311
VL + V +GKV M+KLF+EMLEA +
Sbjct: 197 GAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMM 247
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 153 bits (388), Expect = 6e-45
Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 78/320 (24%)
Query: 19 RKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKML 78
+ + +E V+ +R RG + + + + ++L
Sbjct: 7 HHHHSSGLVPRG---SHKREAVQEERQRGKDRNENEVE-------STSSANEDMPVERIL 56
Query: 79 EALLLCEPEMLTVRSETPQSDPT--LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
EA L EP+ T +P+ + ++ D++L ++ WAK+IP F++L L+D
Sbjct: 57 EAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDD 116
Query: 137 QMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKHSGSL 196
Q+ LL++ W E+L + ++RS+ I A+ L + A G I+ +V
Sbjct: 117 QVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAHSAGVGAIFDRVLT---- 171
Query: 197 DGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLAN 256
EL ++ + D G +VL N
Sbjct: 172 ------ELVSKMRDMQMDKTE---LGCLRA-------------------------IVLFN 197
Query: 257 SDVK-LDEFSSLKKFRNSILSSLGDCI--------------------------YVLRFWS 289
D K L + ++ R + +SL L
Sbjct: 198 PDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLF 257
Query: 290 TVHKDGKVLMNKLFVEMLEA 309
G ++ +EMLEA
Sbjct: 258 FFKLIGDTPIDTFLMEMLEA 277
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 150 bits (380), Expect = 4e-44
Identities = 78/284 (27%), Positives = 125/284 (44%), Gaps = 72/284 (25%)
Query: 56 PDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRE 115
P+ L+ Q P NK++ LL+ EPE + + D ++ + +L DL DRE
Sbjct: 4 PEFLNPQLVQPAKKPY---NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRE 60
Query: 116 LVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDE 175
LV IIGWAK IPGF+ LSL DQM LLQS W EIL L + YRSL ++ +A D ++DE
Sbjct: 61 LVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSF-EDELVYADDYIMDE 119
Query: 176 RQARECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC-KAFFK 234
Q++ G ++ + +L ++ + + KA
Sbjct: 120 DQSKLAGLLDLNNAIL-----------QLVKKYKSMKLEKEE---------FVTLKA--- 156
Query: 235 RTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI----------- 282
+ LANSD +++ +++K ++ + +L D
Sbjct: 157 -----------------IALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRA 199
Query: 283 ---------------YVLRFWSTVHKDGKVLMNKLFVEMLEAYL 311
++ + + +GKV M+KLF+EMLEA +
Sbjct: 200 GKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV 243
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 147 bits (372), Expect = 5e-43
Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 70/271 (25%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
S + +L+AL +L Q + +NSL L +RELV +I WAK +P
Sbjct: 1 SNAKSQTVTILQALNKAALPVLESHHNHGQPPTKVHLLNSLVKLAERELVHLINWAKNVP 60
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
G+TDLSL+DQ+ L++ W E+L L A+RS+ H + FA DLVLD +EI+
Sbjct: 61 GYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTEIF 120
Query: 188 QQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCE-AC-KAFFKRTIQVYSGYRQ 245
+QV + ++ E +A
Sbjct: 121 EQVA-----------AVSEQMMQNHLHKD----------ELLLLQA-------------- 145
Query: 246 TGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI---------------------- 282
+VL N++V+ L ++ + + S+L ++ D
Sbjct: 146 ------MVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIR 199
Query: 283 ----YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ F+ + +G V L EML+A
Sbjct: 200 QAGERGIAFFQRLKSEGVVTFCDLLKEMLDA 230
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 143 bits (363), Expect = 4e-41
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 19/255 (7%)
Query: 64 PPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWA 123
N SL ++M+ ALL EP +L + + + L++L DRELV +I WA
Sbjct: 5 KKNSLALSLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWA 64
Query: 124 KQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-G 182
K++PGF DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G
Sbjct: 65 KRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKCVEG 123
Query: 183 FSEIYQQVKH-SGSLDGIK--EEE--LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTI 237
EI+ + S + EE + + L+ V + + S E +
Sbjct: 124 MVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLD 183
Query: 238 QVYSGYRQTGACGTLVLANSDVKLDEFSSLKKFRN--SILSSL-GDCIYVLRFWSTVHKD 294
++ TL+ + L ++ ILS + + ++
Sbjct: 184 KITD---------TLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 234
Query: 295 GKVLMNKLFVEMLEA 309
V ++ L +EML+A
Sbjct: 235 NVVPLSDLLLEMLDA 249
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 142 bits (359), Expect = 5e-41
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 19/248 (7%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 3 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 62
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 63 DLTLHDQVHLLECAWLEILMIGLVWRSMEH-PGKLLFAPNLLLDRNQGKCVEGMVEIFDM 121
Query: 190 VKH-SGSLD--GIKEEE--LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244
+ S ++ EE + + L+ V + + S E + ++
Sbjct: 122 LLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITD--- 178
Query: 245 QTGACGTLVLANSDVKLDEFSSLKKFRN--SILSSLGD-CIYVLRFWSTVHKDGKVLMNK 301
TL+ + L ++ ILS + + ++ V +
Sbjct: 179 ------TLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYD 232
Query: 302 LFVEMLEA 309
L +EML+A
Sbjct: 233 LLLEMLDA 240
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 141 bits (358), Expect = 1e-40
Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSE 94
M+KE VR D ++G R + P S Q P S P + ++ A + P M ++
Sbjct: 1 MVKEVVRTDSLKGRRGRLPSKPK--SPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYS 58
Query: 95 TPQSDPT-------LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAE 147
Q++P Q I DL + I GWA++IPGF DL DQ L +S + E
Sbjct: 59 RFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLE 118
Query: 148 ILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
+ L +AYRS P GK+ F + +VL Q GF E +
Sbjct: 119 LFVLRLAYRSNPV-EGKLIFCNGVVLHRLQCVR-GFGEWIDSI 159
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 134 bits (339), Expect = 3e-38
Identities = 66/279 (23%), Positives = 102/279 (36%), Gaps = 83/279 (29%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
+L +++ LL EP + + + + SL+ L D+ELV +I WAK+IPGF
Sbjct: 2 ALSPEQLVLTLLEAEPPHVLISRPSAPFTEA-SMMMSLTKLADKELVHMISWAKKIPGFV 60
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
+LSL DQ+RLL+S W E+L + + +RS+ H GK+ FA DLVLD + + G EI+
Sbjct: 61 ELSLFDQVRLLESCWMEVLMMGLMWRSIDH-PGKLIFAPDLVLDRDEGKCVEGILEIFDM 119
Query: 190 VKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCE-AC-KAFFKRTIQVYSGYRQTG 247
+ R + E C KA
Sbjct: 120 L-----------LATTSRFRELKLQHK----------EYLCVKA---------------- 142
Query: 248 ACGTLVLANSDVK--------LDEFSSLKKFRNSILSSLGDCI----------------- 282
++L NS + D L N++ +L I
Sbjct: 143 ----MILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANL 198
Query: 283 ------------YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ + V + L +EML A
Sbjct: 199 LMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 237
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 131 bits (331), Expect = 9e-37
Identities = 59/308 (19%), Positives = 96/308 (31%), Gaps = 97/308 (31%)
Query: 45 VRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPE----------MLTVRSE 94
++ G + P ++ LL CEP+ L
Sbjct: 1 MKKGHHHHHHLV-------------PRGSIPHLILELLKCEPDEPQVQAKIMAYLQQEQA 47
Query: 95 TPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
L T + + D+ L I+ WA+ F +L ++DQM+LLQ+ W+E+L L
Sbjct: 48 NRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHI 107
Query: 155 YRSLPHC-AGKIRFASDLVLDERQARE---CGFSEIYQQVKHSGSLDGIKEEELPRRLCL 210
YR + H G I + +D + + + EL +L
Sbjct: 108 YRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQ-----------ELVAKLRS 156
Query: 211 VCGDVASGFHYGVASCE-AC-KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSL 267
+ D E C K LVL + DVK L+ F +
Sbjct: 157 LQFDQR----------EFVCLKF--------------------LVLFSLDVKNLENFQLV 186
Query: 268 KKFRNSILSSLGDCI--------------------------YVLRFWSTVHKDGKVLMNK 301
+ + + ++L D + H +G V N
Sbjct: 187 EGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNN 246
Query: 302 LFVEMLEA 309
L +EML A
Sbjct: 247 LLIEMLHA 254
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 130 bits (328), Expect = 2e-36
Identities = 54/271 (19%), Positives = 96/271 (35%), Gaps = 68/271 (25%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPT--LQTINSLSDLYDRELVCIIGWAKQ 125
+ + ++LEA L EP+ T +P+ + ++ D++L ++ WAK+
Sbjct: 4 ANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKR 63
Query: 126 IPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSE 185
IP F++L L+DQ+ LL++ W E+L + ++RS+ I A+ L + A G
Sbjct: 64 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV-KDGILLATGLHVHRNSAHSAGVGA 122
Query: 186 IYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245
I+ +V EL ++ + D G
Sbjct: 123 IFDRVLT----------ELVSKMRDMQMDKT---ELGCLRA------------------- 150
Query: 246 TGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI---------------------- 282
+VL N D K L + ++ R + +SL
Sbjct: 151 ------IVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALR 204
Query: 283 ----YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
L G ++ +EMLEA
Sbjct: 205 SIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 235
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 129 bits (326), Expect = 4e-36
Identities = 50/283 (17%), Positives = 97/283 (34%), Gaps = 78/283 (27%)
Query: 64 PPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWA 123
P + ++ L + EPE+L ++ D + + +L+ L R+++ + WA
Sbjct: 6 PAALPQLTPT---LVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWA 62
Query: 124 KQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAG-KIRFASDLVLDERQARECG 182
K IPGF +L L+DQM LLQ +W ++ + +RS +G + FA DL+++E++
Sbjct: 63 KAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPC 122
Query: 183 FSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC-KAFFKRTIQVYS 241
+ + + + L + Y C K
Sbjct: 123 MYDQCKHML-----------FISTELQRLQVSYE---EY------LCMKT---------- 152
Query: 242 GYRQTGACGTLVLANSDVK--LDEFSSLKKFRNSILSSLGDCIYVLR------------- 286
L+L +S K L + R + + LG I
Sbjct: 153 ----------LLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQRFYQL 202
Query: 287 ------------------FWSTVHKDGKVLMNKLFVEMLEAYL 311
F + + K + ++ E++ +
Sbjct: 203 TKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAEIITNQI 245
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 130 bits (327), Expect = 4e-36
Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 15/270 (5%)
Query: 47 GGRQKYRRNPDLLSQQWPPNK--SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQT 104
G + + L + + + +L +++ LL EP + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEA-SM 60
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGK 164
+ SL+ L D+ELV +I WAK+IPGF +LSL DQ+RLL+S W E+L + + +RS+ H GK
Sbjct: 61 MMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDH-PGK 119
Query: 165 IRFASDLVLDERQAREC-GFSEIYQQVKH-SGSLDGIK--EEELPRRLCLVCGDVASGFH 220
+ FA DLVLD + + G EI+ + + +K +E LC+ + +
Sbjct: 120 LIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEY---LCVKAMILLNSSM 176
Query: 221 YGVASCEACKAFFKRTIQVYSGYRQT-GACGTLVLANSDVKLDEFSSLKKFRNSILSSLG 279
Y + + ++ + + +S + ++L + +
Sbjct: 177 YPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRH--- 233
Query: 280 DCIYVLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ + V + L +EML A
Sbjct: 234 ASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 263
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 129 bits (325), Expect = 5e-36
Identities = 39/280 (13%), Positives = 89/280 (31%), Gaps = 70/280 (25%)
Query: 60 SQQWPPNKSIPSLEENKMLEALLLCEPE--MLTVRSETPQSDPTLQTINSLSDLYDRELV 117
S + + + ++++ E + + + + + + + + D+ L
Sbjct: 2 SHMLEDPLRVSPMIR-EFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLF 60
Query: 118 CIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPH-CAGKIRFASDLVLDER 176
+ WA+ F DL ++DQM+LLQ +W+++L L + + + + + + V +
Sbjct: 61 SQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLM 120
Query: 177 QARECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRT 236
G ++ EL +L + D+
Sbjct: 121 SLGLLGVPQLGDYFN-----------ELQNKLQDLKFDMGD------------------- 150
Query: 237 IQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI------------- 282
Y + L+L N V+ + ++ + +++ ++L D
Sbjct: 151 ---YVCMK------FLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRG 201
Query: 283 -------------YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
T H G L +EML A
Sbjct: 202 LVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHA 241
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 127 bits (320), Expect = 2e-35
Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 69/268 (25%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQS-DPTLQTINSLSDLYDRELVCIIGWAKQIPGF 129
+L+ + LE ++ E + + T+N++ ++L ++ WAK +P F
Sbjct: 4 NLQADMPLERIIEAEKRVECNDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHF 63
Query: 130 TDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQ 189
T L L DQ++LL++ W E+L ++RS+ I A+ L +++ A G IY +
Sbjct: 64 TSLPLTDQVQLLRAGWNELLIAAFSHRSMQA-QDAIVLATGLTVNKSTAHAVGVGNIYDR 122
Query: 190 VKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC-KAFFKRTIQVYSGYRQTGA 248
V EL ++ + D C +A
Sbjct: 123 VLS----------ELVNKMKEMKMDKTE---------LGCLRA----------------- 146
Query: 249 CGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI------------------------- 282
++L N DV+ + ++ R I L +
Sbjct: 147 ---IILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIG 203
Query: 283 -YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
L G V ++ +EMLE
Sbjct: 204 LKCLEHLFFFKLIGDVPIDTFLMEMLEG 231
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 128 bits (323), Expect = 3e-35
Identities = 52/296 (17%), Positives = 107/296 (36%), Gaps = 80/296 (27%)
Query: 54 RNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYD 113
+ P + + P +I + L EPE++ ++ + D +++L+ L
Sbjct: 25 KEPSVNTALVPQLSTISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAG 84
Query: 114 RELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAG-KIRFASDLV 172
++++ ++ WAK +PGF +L L DQ+ L+Q +W +L+ +++RS H + FA DLV
Sbjct: 85 KQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLV 144
Query: 173 LDERQARECGFSEIYQQVKH-SGSLDGIK--EEELPRRLCLVCGDVASGFHYGVASCEAC 229
+E + + E+ Q + S ++ EE +
Sbjct: 145 FNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEY---TIM------------------- 182
Query: 230 KAFFKRTIQVYSGYRQTGACGTLVLANSDVK--LDEFSSLKKFRNSILSSLGDCI----- 282
K L+L ++ K L ++ ++ R + + L +
Sbjct: 183 KV--------------------LLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPN 222
Query: 283 ------------------------YVLRFWSTVHKDG---KVLMNKLFVEMLEAYL 311
+L F ++ KV + VE++ L
Sbjct: 223 NSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQL 278
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 124 bits (313), Expect = 4e-34
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 23/248 (9%)
Query: 72 LEENKMLEALLLCEP-EMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
L +++ LL EP +L R P ++ ++ + SL+ L D+ELV +I WAK+IPGF
Sbjct: 1 LSPEQLVLTLLEAEPPHVLISRPSAPFTEASM--MMSLTKLADKELVHMISWAKKIPGFV 58
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
+LSL DQ+RLL+S W E+L + + +RS+ H GK+ FA DLVLD + + G EI+
Sbjct: 59 ELSLFDQVRLLESCWMEVLMMGLMWRSIDH-PGKLIFAPDLVLDRDEGKCVEGILEIFDM 117
Query: 190 VKH-SGSLDGIK--EEELP--RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244
+ + +K +E + + L+ + Y + + ++ + +
Sbjct: 118 LLATTSRFRELKLQHKEYLCVKAMILLNSSM-----YPLVTATQDADSSRKLAHLLNAVT 172
Query: 245 QTGACGTLVLANSDVKLDEFSSLKKFRN--SILSSLGD-CIYVLRFWSTVHKDGKVLMNK 301
LV + + + N +LS + + + V +
Sbjct: 173 D-----ALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYD 227
Query: 302 LFVEMLEA 309
L +EML A
Sbjct: 228 LLLEMLNA 235
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 123 bits (311), Expect = 4e-34
Identities = 49/275 (17%), Positives = 88/275 (32%), Gaps = 73/275 (26%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQ-----TINSLSDLYDRELVCIIGW 122
S L + ALL E + S + ++ +I + + +L+ ++ W
Sbjct: 1 SSYELASLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEW 60
Query: 123 AKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECG 182
AK IP F +L L+DQ+ LL++ E L L RS+ + +D ++
Sbjct: 61 AKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-KDVLLLGNDYIVPRHCPELAE 119
Query: 183 FSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC-KAFFKRTIQVYS 241
S + ++ EL + D Y A KA
Sbjct: 120 MSRVSIRILD----------ELVLPFQELQIDDN---EY------AYLKA---------- 150
Query: 242 GYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI------------------ 282
++ + D K L + +K+ R+ + SL D I
Sbjct: 151 ----------IIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLL 200
Query: 283 --------YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
++ + G ++ L EML
Sbjct: 201 PTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLG 235
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 127 bits (321), Expect = 4e-34
Identities = 41/229 (17%), Positives = 70/229 (30%), Gaps = 38/229 (16%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGG-RQKYRRNPDLL 59
+ Y N C I+K+ R CQ CRFQKCL GM +R R+ ++K
Sbjct: 84 KLIYDRCDLN-CRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSD 142
Query: 60 SQQWPPNKSIPSLEENKMLEALLLCEPEMLT----------------------------- 90
Q P + + ++ + P
Sbjct: 143 IDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGED 202
Query: 91 -------VRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQS 143
+ + ++ + I +AK IPGF +L LNDQ+ LL+
Sbjct: 203 KIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKY 262
Query: 144 TWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
EI+ +A + + ++ F + +
Sbjct: 263 GVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFE 311
Score = 66.2 bits (161), Expect = 2e-12
Identities = 24/73 (32%), Positives = 33/73 (45%)
Query: 177 QARECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRT 236
+ ++ + L C VCGD ASGFHYGV +CE CK FF+RT
Sbjct: 21 KVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRT 80
Query: 237 IQVYSGYRQTGAC 249
I++ Y +
Sbjct: 81 IRLKLIYDRCDLN 93
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 123 bits (311), Expect = 7e-34
Identities = 50/283 (17%), Positives = 102/283 (36%), Gaps = 80/283 (28%)
Query: 67 KSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQI 126
+I + L EPE++ ++ + D +++L+ L ++++ ++ WAK +
Sbjct: 4 STISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVL 63
Query: 127 PGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAG-KIRFASDLVLDERQARECGFSE 185
PGF +L L DQ+ L+Q +W +L+ +++RS H + FA DLV +E + + E
Sbjct: 64 PGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYE 123
Query: 186 IYQQVKH-SGSLDGIK--EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSG 242
+ Q + S ++ EE + K
Sbjct: 124 LCQGMHQISLQFVRLQLTFEEY---TIM-------------------KV----------- 150
Query: 243 YRQTGACGTLVLANSDVK--LDEFSSLKKFRNSILSSLGDCI------------------ 282
L+L ++ K L ++ ++ R + + L +
Sbjct: 151 ---------LLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLT 201
Query: 283 -----------YVLRFWSTVHKDG---KVLMNKLFVEMLEAYL 311
+L F ++ KV + VE++ L
Sbjct: 202 KLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQL 244
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 122 bits (308), Expect = 2e-33
Identities = 32/119 (26%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L +
Sbjct: 13 PPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 72
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAG-KIRFASDLVLDERQARECGFSEIYQQVKH 192
+DQ+ L+Q +W ++ + +RS H +G + FA DL+L+E++ +E F + +
Sbjct: 73 DDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQ 131
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 121 bits (304), Expect = 2e-32
Identities = 27/186 (14%), Positives = 67/186 (36%), Gaps = 17/186 (9%)
Query: 10 NDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSI 69
C + KR+ K Q + + +G++ + +
Sbjct: 21 FQCAV-KRKEKKAQKDKDKPNSTTSCSPDGIKQEIDPQRLDTDSQLLS------VNGVKP 73
Query: 70 PSLEENKMLEALLLCEPE---------MLTVRSETPQSDPTLQTINSLSDLYDRELVCII 120
+ E+ +++ L+ + E V + + + + ++++ + I+
Sbjct: 74 ITPEQEELIHRLVYFQNEYEHPSPEDIKRIVNAAPEEENVAEERFRHITEITILTVQLIV 133
Query: 121 GWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180
++K++PGF L DQ+ LL++ +E++ +A R I FA++
Sbjct: 134 EFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAE-TDSILFATNQPYTRESYTV 192
Query: 181 CGFSEI 186
G +
Sbjct: 193 AGMGDT 198
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 119 bits (300), Expect = 2e-32
Identities = 49/263 (18%), Positives = 84/263 (31%), Gaps = 67/263 (25%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
+ + LL EP + + I ++ +L R L + WA+ IP F DL +
Sbjct: 9 SGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQI 68
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQA-RECGFSEIYQQVKHS 193
DQ+ LL+ TW+E+ L A S+P + A+ L A R F + + +
Sbjct: 69 TDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQ-- 126
Query: 194 GSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLV 253
E +L + D A Y +V
Sbjct: 127 ---------EQVEKLKALHVDSAE---YSCLKA-------------------------IV 149
Query: 254 LANSDVK-LDEFSSLKKFRNSILSSLGDCI--------------------------YVLR 286
L SD L + + ++ + +L + + V+
Sbjct: 150 LFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIE 209
Query: 287 FWSTVHKDGKVLMNKLFVEMLEA 309
V GK + L +ML +
Sbjct: 210 QLFFVRLVGKTPIETLIRDMLLS 232
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 120 bits (303), Expect = 5e-32
Identities = 57/289 (19%), Positives = 93/289 (32%), Gaps = 84/289 (29%)
Query: 64 PPNKSIPSLEENKMLEALLLCEPE----------MLTVRSETPQSDPTLQTINSLSDLYD 113
++ ++ LL CEP+ L L T + + D
Sbjct: 102 DSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMAD 161
Query: 114 RELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC-AGKIRFASDLV 172
+ L I+ WA+ F +L ++DQM+LLQ+ W+E+L L YR + H G I +
Sbjct: 162 QTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQ 221
Query: 173 LDERQARE---CGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCE-A 228
+D + + + EL +L + D E
Sbjct: 222 VDYSIIASQAGATLNNLMSHAQ-----------ELVAKLRSLQFDQR----------EFV 260
Query: 229 C-KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI---- 282
C K LVL + DVK L+ F ++ + + ++L D
Sbjct: 261 CLKF--------------------LVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY 300
Query: 283 ----------------------YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ H +G V N L +EML A
Sbjct: 301 PQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHA 349
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 118 bits (298), Expect = 6e-32
Identities = 50/290 (17%), Positives = 90/290 (31%), Gaps = 84/290 (28%)
Query: 65 PNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAK 124
SI L E + L A E + L V ++ ++SL + ++++ ++ WA+
Sbjct: 4 QELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWAR 63
Query: 125 QIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCA-----------------GKIRF 167
IP F+ L + DQ+ L++ +W E+L IA+RS+ +
Sbjct: 64 DIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCL 123
Query: 168 ASDLVLDERQARECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCE 227
+ L A + G +I+ +V EL ++ + D A
Sbjct: 124 MPGMTLHRNSALQAGVGQIFDRVLS----------ELSLKMRTLRVDQAE---------Y 164
Query: 228 AC-KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI--- 282
KA ++L N DVK L ++ R + L +
Sbjct: 165 VALKA--------------------IILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRS 204
Query: 283 ---YVLRF--------------------WSTVHKDGKVLMNKLFVEMLEA 309
RF H + + L
Sbjct: 205 RSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRN 254
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 119 bits (300), Expect = 8e-32
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 35 MLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSE 94
M KE VR DR + ++ ++ ++ + + L E K+ +A P + +
Sbjct: 1 MSKESVRNDRNKKKKEPSKQEC---TESYEMTAELDDLTE-KIRKAHQETFPSLCQLGKY 56
Query: 95 TPQSDPT------LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEI 148
T S L + S+L + ++ I+ +AK++PGFT L++ DQ+ LL++ +I
Sbjct: 57 TTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDI 116
Query: 149 LTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L L I R P + F+ L L+ Q GF + V
Sbjct: 117 LILRICTRYTPE-QDTMTFSDGLTLNRTQMHNAGFGPLTDLV 157
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 116 bits (291), Expect = 6e-31
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLS 133
+ L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L
Sbjct: 20 QPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLH 79
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEIYQQVKH 192
++DQM ++Q +W ++ + +RS + + + FA DLV +E + + +++H
Sbjct: 80 VDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRH 139
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 109 bits (275), Expect = 9e-29
Identities = 51/279 (18%), Positives = 93/279 (33%), Gaps = 74/279 (26%)
Query: 68 SIPSLEENKMLEALLLCEPE--------MLTVRSETPQSDPTLQTINSLSDLYDRELVCI 119
S +++ LL EPE + ++ + L + D+ + I
Sbjct: 2 SSGGPNVPELILQLLQLEPEEDQVRARIVGCLQEPAKSRSDQPAPFSLLCRMADQTFISI 61
Query: 120 IGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC-AGKIRFASDLVLDERQA 178
+ WA++ F +L + DQM LLQ++W+E+L L YR + + I + ++
Sbjct: 62 VDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTV 121
Query: 179 RECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC-KAFFKRTI 237
S ++ V + +EL +L + D C K
Sbjct: 122 AVQAGSLLHSLVLRA--------QELVLQLHALQLDRQE---------FVCLKF------ 158
Query: 238 QVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIY------------- 283
L+L + DVK L+ S +K + ++L D
Sbjct: 159 --------------LILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQL 204
Query: 284 -------------VLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ H ++ N L +EML+A
Sbjct: 205 LLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQA 243
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 107 bits (268), Expect = 2e-27
Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 11/153 (7%)
Query: 47 GGRQKYRRNPDLLSQQWPPNKSIPSLEE--NKMLEALLLCEPEMLTVRSETPQSDPT--- 101
+ + L+ + S ++ A L P + Q
Sbjct: 2 SSHHHHHHSSGLVPRGSHMQPPDASPTNLLTSLIRAHLDSGPNTAKLDYSKFQELVLPRF 61
Query: 102 ----LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRS 157
+ DL L I WA++IPGF +LS DQ LL+S + E+ L +AYRS
Sbjct: 62 GKEDAGDVQQFYDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRS 121
Query: 158 LPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
P GK+ F S LVL Q GF + +
Sbjct: 122 KPG-EGKLIFCSGLVLHRLQCAR-GFGDWIDNI 152
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 104 bits (262), Expect = 2e-26
Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 8/166 (4%)
Query: 22 CQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEAL 81
RF+ +R+G + + + N S S++ L
Sbjct: 29 SDFVRFRPPVREGPVTRSASRAA--------SLHSLSDASSDSFNHSPESVDTKLNFSNL 80
Query: 82 LLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLL 141
L+ + + S L + L+DL + +IG+AK IPGF DL+ DQ+ LL
Sbjct: 81 LMMYQDSGSPDSSEEDQQSRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALL 140
Query: 142 QSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
+S+ EI+ L D + G +
Sbjct: 141 KSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLEL 186
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 104 bits (260), Expect = 3e-26
Identities = 36/269 (13%), Positives = 82/269 (30%), Gaps = 46/269 (17%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPT-------LQTINSLSDLYDRELVCIIGWAKQIP 127
+++EA E + + P +++L + +++L ++ +A+ +P
Sbjct: 12 ERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMP 71
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
F + L+DQ+ LL++ W E+L +A+ S+ G E
Sbjct: 72 HFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGG-----AGGGGGGLGHDGSFERR 126
Query: 188 QQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
L + R + G + ++ R+
Sbjct: 127 SPGLQPQQLFLNQSFSYHRNSAIKAG-------VSAIFDRILSELSVKMKRLNLDRRELS 179
Query: 248 ACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCI------------------------ 282
++L N D++ + + ++ R + + L +
Sbjct: 180 CLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSI 239
Query: 283 --YVLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ +LF+E LEA
Sbjct: 240 SLKCQDHLFLFRITSDRPLEELFLEQLEA 268
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
binding domain, HERR2, hormone nuclear receptor; NMR
{Homo sapiens} SCOP: g.39.1.2
Length = 98
Score = 97.9 bits (244), Expect = 7e-26
Identities = 45/57 (78%), Positives = 51/57 (89%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPD 57
NIEY+CPA+N+CEI KRRRK+CQACRF K L+ GMLKEGVRLDRVRGGRQKY+R D
Sbjct: 38 NIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYKRRLD 94
Score = 78.6 bits (194), Expect = 1e-18
Identities = 34/48 (70%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
+P+RLCLVCGD+ASG+HYGVASCEACKAFFKRTIQ Y T C
Sbjct: 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNEC 49
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 100 bits (252), Expect = 2e-25
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 70 PSLEE--NKMLEALLLCEPEMLTVRSETPQSDP------TLQTINSLSDLYDRELVCIIG 121
P LEE K+ +A P + + T S L + S+L + ++ I+
Sbjct: 3 PQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVE 62
Query: 122 WAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC 181
+AK++PGFT LS+ DQ+ LL++ +IL L I R P + F+ L L+ Q
Sbjct: 63 FAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTMTFSDGLTLNRTQMHNA 121
Query: 182 GFSEIYQQV 190
GF + V
Sbjct: 122 GFGPLTDLV 130
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate
response gene product, transcription factor, monomeric
protein-DNA complex; HET: DNA; 2.70A {Rattus
norvegicus} SCOP: g.39.1.2
Length = 89
Score = 94.3 bits (235), Expect = 1e-24
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNP 56
+ +Y C A+ DC ++KRRR CQ CRFQKCL GM+KE VR D ++G R + P
Sbjct: 34 SAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 89
Score = 70.4 bits (173), Expect = 9e-16
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
C VCGD AS HYGV +CE CK FFKRT+Q + Y C
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDC 45
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger,
DNA- binding domain, transcription factor, FTZ-F1,
C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Length = 113
Score = 94.8 bits (236), Expect = 2e-24
Identities = 30/69 (43%), Positives = 39/69 (56%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS 60
N YTC + +C+I+K +RK C CRFQKCL GM E VR DR+RGGR K+
Sbjct: 43 NKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDR 102
Query: 61 QQWPPNKSI 69
K++
Sbjct: 103 ALKQQKKAL 111
Score = 73.2 bits (180), Expect = 2e-16
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 198 GIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
G +E LC VCGD SG+HYG+ +CE+CK FFKRT+Q Y + C
Sbjct: 1 GEFGDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNC 54
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 98.3 bits (245), Expect = 3e-24
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 47 GGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEM----------LTVRSETP 96
G + + L + + E +++E + E T S
Sbjct: 2 GSSHHHHHHSSGLVPRGSHESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQ 61
Query: 97 QSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYR 156
+ + + S+L + ++ + +AKQ+PGFT L++ DQ+ LL++ +IL L I R
Sbjct: 62 RVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTR 121
Query: 157 SLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
P + F+ L L+ Q GF + V
Sbjct: 122 YTPE-QDTMTFSDGLTLNRTQMHNAGFGPLTDLV 154
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 97.5 bits (243), Expect = 3e-24
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 64 PPNKSIPSLEE-NKMLEALLLCEPEM--LTVRSETPQSDPTLQTINSLSDLYDRELVCII 120
+ ++ ++ + + P+ L QS + L + I
Sbjct: 5 HHHHHHGAISLITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIK 64
Query: 121 GWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARE 180
+A++IPG+ DL DQ L QS E+ L +AYR+ K+ F + VL Q
Sbjct: 65 QFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARID-DTKLIFCNGTVLHRTQCLR 123
Query: 181 CGFSEI 186
F E
Sbjct: 124 -SFGEW 128
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 94.0 bits (234), Expect = 7e-23
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 64 PPNKSIP-SLEENKMLEALLLCEPE---------MLTVRSETPQSDPTLQTINSLSDLYD 113
N S S E+ +++ L+ + E + D ++++
Sbjct: 3 HMNGSKGISPEQEELIHRLVYFQNEYEHPSEEDVKRIINQPMDGEDQCDVRFRHITEITI 62
Query: 114 RELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVL 173
+ I+ +AK++PGF L DQ+ LL++ +E++ +A R I F ++
Sbjct: 63 LTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQ-TDSILFVNNQPY 121
Query: 174 DERQARECGFSEIYQQV 190
G E + +
Sbjct: 122 SRDSYNLAGMGETIEDL 138
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 94.0 bits (234), Expect = 9e-23
Identities = 28/163 (17%), Positives = 65/163 (39%), Gaps = 20/163 (12%)
Query: 39 GVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALL-----LCEPEMLTVRS 93
G + + GG+Q R N + + ++ L+ +P ++
Sbjct: 1 GSHMASMTGGQQMGRDPL--------KNVPPLTANQKSLIARLVWYQEGYEQPSEEDLKR 52
Query: 94 ETPQSDP------TLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAE 147
T + ++++ + I+ +AK +PGF +S +DQ+ LL++ +E
Sbjct: 53 VTQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSE 112
Query: 148 ILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
++ L +A R + FA++ R+ G + + + +
Sbjct: 113 VMMLRVARRYDAA-TDSVLFANNQAYTRDNYRKAGMAYVIEDL 154
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery,
lever ARM, transcription, hormone; HET: DNA; 1.61A
{Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B*
3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A*
3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A*
1gdc_A 2gda_A 1rgd_A ...
Length = 90
Score = 88.2 bits (219), Expect = 2e-22
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR 53
Y C NDC I+K RRK C ACR++KCL+ GM E + + G Q+
Sbjct: 36 QHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQAT 88
Score = 70.9 bits (174), Expect = 5e-16
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
+CLVC D ASG HYGV +C +CK FFKR ++ Y C
Sbjct: 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDC 47
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex,
transcription/DNA complex; 3.10A {Rattus norvegicus}
SCOP: g.39.1.2
Length = 105
Score = 87.9 bits (218), Expect = 5e-22
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPD 57
+Y C + NDC I+K RRK C +CR +KC GM +L ++ + +
Sbjct: 41 KQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLGNLKLQEEGENS 97
Score = 74.8 bits (184), Expect = 3e-17
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
P++ CL+CGD ASG HYG +C +CK FFKR + Y C
Sbjct: 6 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDC 52
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 90.2 bits (224), Expect = 2e-21
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 1/121 (0%)
Query: 70 PSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGF 129
+ ++ + + S + + ++ +AK IPGF
Sbjct: 32 YAHDKLGSSPGNFNANHASGSPYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGF 91
Query: 130 TDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQ 189
DLS +DQ+ LL++ E+L + A + F S ++ G ++
Sbjct: 92 RDLSQHDQVTLLKAGTFEVLMVRFASLFNVK-DQTVMFLSRTTYSLQELGAMGMGDLLSA 150
Query: 190 V 190
+
Sbjct: 151 M 151
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 90.2 bits (224), Expect = 4e-21
Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 19/173 (10%)
Query: 28 QKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALL----- 82
+ + ++ ++ Q + + + P S E+ M+E L+
Sbjct: 5 HQHQHQHQHQQPLQ-----EEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQ 59
Query: 83 --------LCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
+ + + Q ++L + I+ +AKQ+PGF LS
Sbjct: 60 CNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSR 119
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
DQ+ LL+++ E++ L + R P + I F D + + G +
Sbjct: 120 EDQIALLKTSAIEVMLLETSRRYNPG-SESITFLKDFSYNREDFAKAGLQVEF 171
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 89.5 bits (222), Expect = 4e-21
Identities = 24/158 (15%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 43 DRVRGGRQKYRRNPD--------LLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSE 94
+ +R +Q+ P+ + + + K L + + S
Sbjct: 6 EMIRSLQQRPEPTPEEWDLIHIATEAHR----STNAQGSHWKQRRKFLPDDIGQSPIVSM 61
Query: 95 TPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
L+ + + + + ++ +AK++P F++L DQ+ LL+ EI++L A
Sbjct: 62 PDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAA 121
Query: 155 YRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
R P + + + ++ + Q + G + +
Sbjct: 122 VRYDPE-SDTLTLSGEMAVKREQLKNGGLGVVSDAIFE 158
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex,
transcription/DNA complex; 2.70A {Homo sapiens} SCOP:
g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Length = 110
Score = 85.3 bits (211), Expect = 6e-21
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKY---RRNPD 57
+TCP + DC I K R+ CQACR ++C+ GM+KE + D +++ R+ +
Sbjct: 40 KALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEE 99
Query: 58 LLSQQWPPNKS 68
L P S
Sbjct: 100 ALKDSLRPKLS 110
Score = 72.5 bits (178), Expect = 3e-16
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 202 EELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
+ R+C VCGD A+GFH+ +CE CK FF+R+++ + + G C
Sbjct: 2 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDC 51
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with
drug, transcription/DNA complex; HET: DNA; 2.40A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Length = 84
Score = 83.6 bits (207), Expect = 9e-21
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47
+ +Y CPA+N C I+K RRK+CQACR +KC GM+K G+R DR G
Sbjct: 38 HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGG 84
Score = 74.7 bits (184), Expect = 2e-17
Identities = 27/47 (57%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
R C VC D ASG+HYGV SCE CKAFFKR+IQ ++ Y T C
Sbjct: 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQC 49
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR,
nuclear receptor, protein-DNA complex, transcripti
complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Length = 99
Score = 83.6 bits (207), Expect = 2e-20
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLS 60
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG + S
Sbjct: 37 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSS 96
Query: 61 QQ 62
Sbjct: 97 AN 98
Score = 74.0 bits (182), Expect = 5e-17
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
+ +C +CGD +SG HYGV SCE CK FFKRT++ Y R C
Sbjct: 1 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDC 48
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 86.3 bits (214), Expect = 2e-20
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 93 SETPQSDPT---LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEIL 149
S++P DP + S + + ++ +AK+IPGF DLS +DQ+ LL++ E+L
Sbjct: 7 SKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVL 66
Query: 150 TLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
+ A + F S G ++ +
Sbjct: 67 MVRFASLFDAK-ERTVTFLSGKKYSVDDLHSMGAGDLLNSM 106
>2han_A Protein ultraspiracle; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2
Length = 93
Score = 82.8 bits (205), Expect = 3e-20
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49
++ Y C + +C I+KR+R CQ CR+QKCL GM +E V+ +R R
Sbjct: 44 DLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGIHR 92
Score = 71.6 bits (176), Expect = 4e-16
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
+ LC +CGD ASG HYGV SCE CK FFKRT++ Y R+ C
Sbjct: 9 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNC 55
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 86.9 bits (215), Expect = 3e-20
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 67 KSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQI 126
+S P +E +E LL + +T + P P ++ + + R L + WA+ I
Sbjct: 3 QSTPIIE----VEGPLLSDTH-VTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSI 57
Query: 127 PGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFS 184
P F L + L+++ W E+ TL +A + A+ + + +E S
Sbjct: 58 PAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMS-LSTILAAIVNHLQNSIQEDKLS 114
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear
receptor, protein-DNA, transcription/DNA complex; HET:
DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A*
1rxr_A 1r0n_A 1r0o_A 2nll_A*
Length = 85
Score = 82.0 bits (203), Expect = 4e-20
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 47
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R RG
Sbjct: 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 85
Score = 72.7 bits (179), Expect = 1e-16
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
+ +C +CGD +SG HYGV SCE CK FFKRT++ Y R C
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDC 50
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Length = 86
Score = 81.6 bits (202), Expect = 5e-20
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49
N+ YTC +C INK R CQ CR QKC GM KE VR DR + +
Sbjct: 38 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKK 86
Score = 71.2 bits (175), Expect = 4e-16
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
+ C VC D +SG+HYGV++CE CK FF+R+IQ Y + C
Sbjct: 3 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNC 49
>2han_B Ecdysone receptor; transcription regulation, transcription factor,
DNA-binding, nuclear protein, nuclear receptor, zinc
finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
PDB: 1r0o_B 1r0n_B
Length = 119
Score = 81.1 bits (200), Expect = 2e-19
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR---RNPD 57
+ Y C CE++ R+ CQ CR +KCL GM E V + +++ + + D
Sbjct: 42 SAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKD 101
Query: 58 LLSQQWPPNKSIPSLEEN 75
++ P + +
Sbjct: 102 KMTTSPSSQHGSPGIHRD 119
Score = 69.2 bits (169), Expect = 6e-15
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
LCLVCGD ASG+HY +CE CK FF+R++ + Y + AC
Sbjct: 9 ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRAC 53
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 83.5 bits (207), Expect = 4e-19
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 5/113 (4%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
+ ++++ + + L+++ + ++ + K++PGF L
Sbjct: 14 HFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDH 73
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
DQ+ LL+ + E + L A K + L E + R G S+ Y
Sbjct: 74 EDQIALLKGSAVEAMFLRSAEIF-----NKKLPSGHSDLLEERIRNSGISDEY 121
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 83.7 bits (206), Expect = 5e-19
Identities = 45/287 (15%), Positives = 90/287 (31%), Gaps = 49/287 (17%)
Query: 50 QKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLS 109
++ + + S P+ + + P + Q TL+ +
Sbjct: 2 EEQPQQISVASGTPVSADQTPATPQEQPRAPWWDASPGV--------QRLITLKDPQVVC 53
Query: 110 DLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFAS 169
+ L+ + + K +P F L L+ Q+ L++S WA +L L +A L +I +
Sbjct: 54 EAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETN 113
Query: 170 DLVLDERQARECGFSEIYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC 229
R+ + + + + E G A+ +A
Sbjct: 114 TTQEMLTTRRQETEGPEPAEPQATEQPQMVSAEA--------------GHLLPAAAVQAI 159
Query: 230 KAFFKRTIQVYSGYRQTGACGTLVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL--- 285
K+FF + + ++ VL N D+ L ++ + L + I ++
Sbjct: 160 KSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQRE 219
Query: 286 ---RFWS--------------------TVHKDGKVLMNKLFVEMLEA 309
R G V M+ + +EML A
Sbjct: 220 YQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCA 266
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 83.0 bits (205), Expect = 1e-18
Identities = 47/247 (19%), Positives = 86/247 (34%), Gaps = 25/247 (10%)
Query: 70 PSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGF 129
P+ + + + + L + L+DL + +IG+AK IPGF
Sbjct: 30 PTYADFRDFRPPVRMDGST----GSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGF 85
Query: 130 TDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSE---- 185
DL+ +DQ+ LL+S+ E++ L + D D + G +
Sbjct: 86 RDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIE 145
Query: 186 -IYQQVKHSGSLDGIKEEE--LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSG 242
+ + L + EEE L +C+V D EA + T+Q Y
Sbjct: 146 PLIKFQVGLKKL-NLHEEEHVLLMAICIVSPDRPG--VQDAKLVEAIQDRLSNTLQTYIR 202
Query: 243 YRQTGACGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKL 302
R + A K+ ++K + L SL + + + + + L
Sbjct: 203 CRHPPPGSHQLYA----KM-----IQKL--ADLRSLNEEHSKQYRSLSFQPENSMKLTPL 251
Query: 303 FVEMLEA 309
+E+
Sbjct: 252 VLEVFGN 258
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding,
reverb, REV- ERB, transcription regulation,
transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Length = 94
Score = 75.5 bits (186), Expect = 2e-17
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 1 NIEYT-CPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR 53
NI+Y C + +C I + R CQ CRF+KCL GM ++ VR R+ R+K R
Sbjct: 41 NIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIP-KREKQR 93
Score = 74.3 bits (183), Expect = 4e-17
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ---VYSGYRQTGAC 249
LC VCGDVASGFHYGV +CE CK FF+R+IQ Y + C
Sbjct: 6 MVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENC 53
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 78.9 bits (195), Expect = 2e-17
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 96 PQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAY 155
P P L + +D+ ++ +I + K +P F L + DQ+ LL+ EI + +
Sbjct: 47 PTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNT 106
Query: 156 RSLPHCAGKIRFASDLVLDERQARECGFSEI 186
E AR E
Sbjct: 107 TFCLQ-TQNFLCGPLRYTIEDGARVGFQVEF 136
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 74.8 bits (184), Expect = 3e-17
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 3 EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
Y+C C I+K R CQ CRF+KC+ GM + V D R ++K
Sbjct: 39 SYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRK 87
Score = 66.7 bits (163), Expect = 3e-14
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
LC+VCGD A+G+HY +CE CK FF+RTIQ
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQ 33
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
protein, receptor, transcription regulation, zinc,
EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Length = 89
Score = 72.7 bits (179), Expect = 1e-16
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 45
N+ YTC A+ +C I++ R CQ CR +KCL+ GM +E V+
Sbjct: 41 NLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSG 85
Score = 68.1 bits (167), Expect = 7e-15
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
C+VCGD +SG HYG +CE CK+FFKR+++ Y R C
Sbjct: 6 SGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNC 52
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 75.7 bits (186), Expect = 3e-16
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 2/110 (1%)
Query: 83 LCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQ 142
L + QS + + ++ +AK+I GF +L NDQ+ LL+
Sbjct: 30 LAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLK 89
Query: 143 STWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
S E++ + + P + + G ++ +
Sbjct: 90 SGCLEVVLVRMCRAFNPL--NNTVLFEGKYGGMQMFKALGSDDLVNEAFD 137
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding
domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Length = 78
Score = 71.2 bits (175), Expect = 3e-16
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
N Y+C S C ++K +R C+ CR +KC R GM KE V+ +R
Sbjct: 34 NHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER 77
Score = 67.3 bits (165), Expect = 9e-15
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY--RQTGAC 249
LC +CGD A+G HYG +SC+ CK FF+R+++ Y R + C
Sbjct: 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQC 45
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 74.9 bits (184), Expect = 7e-16
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 2/108 (1%)
Query: 83 LCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQ 142
+ L E Q+ + + ++ +AK+I GF +L NDQ+ LL+
Sbjct: 45 ITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK 104
Query: 143 STWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
+ E++ + + + + G + V
Sbjct: 105 AGSLEVVFIRMCRAFDSQ--NNTVYFDGKYASPDVFKSLGCEDFISFV 150
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 71.9 bits (176), Expect = 8e-15
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Query: 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTI-NSLSDLYDRELVCIIGWAKQIPGFTDL 132
LE LL + + T ++ + + + ++ +AK++ GF +L
Sbjct: 26 CQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMEL 85
Query: 133 SLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
NDQ+ LL++ E++ + + + F R G SE+ +
Sbjct: 86 CQNDQIVLLKAGAMEVVLVRMCRAYNAD--NRTVFFEGKYGGMELFRALGCSELISSI 141
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 71.4 bits (175), Expect = 1e-14
Identities = 24/95 (25%), Positives = 36/95 (37%)
Query: 93 SETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLT 152
L + L+DL + +IG+AK IPGF DL+ DQ+ LL+S+ E++ L
Sbjct: 46 GSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 105
Query: 153 IAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
D + G S
Sbjct: 106 SNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLEL 140
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 71.3 bits (175), Expect = 1e-14
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 9/127 (7%)
Query: 70 PSLEENKMLEALLLCEPEMLTVR---SETPQSDPTLQTINSLSDLYDRELVCIIGWAKQI 126
S + +L++ E ++ + + ++ + I +AK I
Sbjct: 37 KSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSI 96
Query: 127 PGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASD---LVLDERQARECGF 183
PGF +L LNDQ+ LL+ EI+ +A + + + + ++ F
Sbjct: 97 PGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDG---VLISEGQGFMTREFLKSLRKPF 153
Query: 184 SEIYQQV 190
+ +
Sbjct: 154 GDFMEPK 160
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 69.5 bits (170), Expect = 1e-13
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 5/153 (3%)
Query: 41 RLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDP 100
RL V + + S++ S + + +L L + + P
Sbjct: 55 RLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWNYKPPADSG 114
Query: 101 TLQTINSLSDLYD---RELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRS 157
+ + L + D II +AK I F DL + DQ+ LL+ E+ L
Sbjct: 115 GKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVF 174
Query: 158 LPHCAGKIRFASDLVLDERQARECGFSEIYQQV 190
L + + +
Sbjct: 175 NAE--TGTWECGRLSYCLEDTAGGFQQLLLEPM 205
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 66.5 bits (162), Expect = 7e-13
Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 64 PPNKSIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWA 123
P I +E M E L+ + + + ++ + + + +A
Sbjct: 35 NPPFVIHDMETLCMAEKTLVAKLVA----NGIQNKEAEVRIFHCCQCTSVETVTELTEFA 90
Query: 124 KQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDER-QARECG 182
K IPGF +L LNDQ+ LL+ E + ++ + + + + E ++
Sbjct: 91 KAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGFITREFLKSLRKP 149
Query: 183 FSEIYQQV 190
F +I +
Sbjct: 150 FCDIMEPK 157
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 61.4 bits (149), Expect = 3e-11
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 73 EENKMLEALLLCEPEM---LTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGF 129
E + L+ + M + + ++ + ++ D + + AK++P F
Sbjct: 8 AELQALDLIQEAFKGMNDPMEQGRQATSFLKNEKSPADIMNIMDVTMRRFVKMAKRLPAF 67
Query: 130 TDLSLNDQMRLLQSTWAEILTLTIAYRSLP 159
DLS + + LL+ E+LT+ R
Sbjct: 68 NDLSQDGKFALLKGGMIEMLTVRGVRRFDS 97
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 59.2 bits (143), Expect = 2e-10
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 73 EENKMLEALLLCEPEMLTVRSETPQSDPTLQ---TINSLSDLYDRELVCIIGWAKQIPGF 129
++ K L+++ M Q+ + + ++ D + ++ AK++ F
Sbjct: 8 KDLKELDSIRDSFQCMNEPLDNDQQASTLAKKEHNPTDILNVMDITMRRLVKMAKRLGAF 67
Query: 130 TDLSLNDQMRLLQSTWAEILTLTIAYR 156
++S + LL+ E+LT+
Sbjct: 68 NEISEAGKFSLLKGGMIEMLTIRGVTV 94
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 1e-06
Identities = 48/262 (18%), Positives = 81/262 (30%), Gaps = 100/262 (38%)
Query: 60 SQQWPPNKSIP------SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYD 113
+ PN S+P SLE N+ + + P ML++ + T + + + +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPS-----P-MLSIS------NLTQEQVQDYVNKTN 357
Query: 114 RELVCIIGWAKQIPGFTDLSL-N--DQMRLLQSTWAEILT--------LTIAYRSLPHCA 162
L KQ+ ++SL N + +++ L + R +
Sbjct: 358 SHL----PAGKQV----EISLVNGAKNL---------VVSGPPQSLYGLNLTLRKAKAPS 400
Query: 163 G----KIRFASDLVLDERQARECGFSEIYQQVK---HSGSLDGIKEEELPRRLCLVCGDV 215
G +I F ER+ + FS + V HS L + L+ D+
Sbjct: 401 GLDQSRIPF------SERKLK---FSNRFLPVASPFHSHLLVPASD--------LINKDL 443
Query: 216 AS-GFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLANSDVKLDEFSSLKKFRNSI 274
+ I VY + G SD L+ SI
Sbjct: 444 VKNNVSFNAKDI---------QIPVYDTF--DG---------SD--------LRVLSGSI 475
Query: 275 LSSLGDCIYVLR-FWSTVHKDG 295
+ DCI L W T +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFK 497
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.013
Identities = 55/383 (14%), Positives = 114/383 (29%), Gaps = 116/383 (30%)
Query: 2 IEYTCPASNDCEINKRRRKACQACRFQKC--LRKGMLK----EGVRLDRVRG-GRQ---- 50
IE ND ++ + R Q LR+ +L+ + V +D V G G+
Sbjct: 113 IEQRDRLYNDNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 51 KYRRNPDLLSQQ-----WPPNKSIPSLEEN-KMLEALLLCEPEMLTVRSETPQSDPTLQT 104
+ + + W K+ S E +ML+ LL T RS+ +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LR 226
Query: 105 INSLSDLYDRELVCIIGWAKQIPGFTD--LSLNDQMRLLQSTWA--------EILTLTIA 154
I+S+ R L+ + + + L L + +Q+ A +IL LT
Sbjct: 227 IHSIQA-ELRRLL-------KSKPYENCLLVLLN----VQNAKAWNAFNLSCKIL-LTTR 273
Query: 155 YRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKHSGSLD------GIKEEELPRRL 208
++ + + + LD + + ++LPR +
Sbjct: 274 FKQVTDFLSAAT-TTHISLDHHSM---TLTP-------DEVKSLLLKYLDCRPQDLPREV 322
Query: 209 C----LVCGDVASGFHYGVA--------SCEACKAFFKRTIQV------YSGYRQTGACG 250
+A G+A +C+ + ++ V + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----- 377
Query: 251 TLVLANSDVKL---------------DEFSSLKKFRNSILSSLGDC--------IYVLRF 287
L + + D + K SL + I +
Sbjct: 378 -LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISIPSIYL 433
Query: 288 WSTVHKDGKVLMNKLFVEMLEAY 310
V + + +++ +++ Y
Sbjct: 434 ELKVKLENEYALHR---SIVDHY 453
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.26
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 73 EEN--KMLEALL-LCEPEMLTVRSETPQSDPTLQTINS 107
E+ K L+A L L + S P L I +
Sbjct: 18 EKQALKKLQASLKLYADD----------SAPAL-AIKA 44
Score = 30.3 bits (67), Expect = 0.42
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 23/52 (44%)
Query: 28 QKCLRKGMLKEGVRLDRVRGGRQKYRRNPDLLSQQWPPNKSIPSLEENKMLE 79
++ L+K L+ ++L Y D S P+L +E
Sbjct: 19 KQALKK--LQASLKL---------YA--DD----------SAPALAIKATME 47
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 27.3 bits (61), Expect = 8.3
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 196 LDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGTLVLA 255
+ + +E+ RR VCGD + G AS A Q+ +GY C T +A
Sbjct: 310 VKNVSVKEI-RRGN-VCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIA 367
Query: 256 NSDVKLDE 263
+L E
Sbjct: 368 CRFDELLE 375
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,814,045
Number of extensions: 279297
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 122
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)