RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11505
(312 letters)
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 105 bits (263), Expect = 9e-28
Identities = 78/243 (32%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
N ++ LL+ EPE L + D L + +L DL+DRE+V I WAK IPGF+ LSL
Sbjct: 2 NALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSL 61
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH-S 193
+DQM +LQS W E+L L +A RSLP ++ FA DLVLDE AR G E+ +
Sbjct: 62 SDQMSVLQSVWMEVLVLGVAQRSLPLQ-DELAFAEDLVLDEEGARAAGLGELGAALLQLV 120
Query: 194 GSLD--GIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ-----VYSGYRQT 246
L ++ EE + L +A+ + EA + + +
Sbjct: 121 RRLQALRLEREEY---VLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPG 177
Query: 247 GACGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEM 306
G + L VL + V +GKV M+KLF+EM
Sbjct: 178 GGAERRRAGRLLLTLPLLRQT-------------AGKVLAHFYGVKLEGKVPMHKLFLEM 224
Query: 307 LEA 309
LEA
Sbjct: 225 LEA 227
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 100 bits (250), Expect = 6e-26
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
NK++ LL+ EPE + + D ++ + +L DL DRELV IIGWAK IPGF+ LSL
Sbjct: 2 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 61
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH-S 193
DQM LLQS W EIL L + YRSL ++ +A D ++DE Q++ G ++ +
Sbjct: 62 ADQMSLLQSAWMEILILGVVYRSLSFE-DELVYADDYIMDEDQSKLAGLLDLNNAILQLV 120
Query: 194 GSLDGIK--EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACGT 251
+K +EE + L +A+ + EA + + A
Sbjct: 121 KKYKSMKLEKEEF---VTLKAIALANSDSMHIEDVEAVQKLQDVLHE---------ALQD 168
Query: 252 LVLANSDVKLDEFSSLKKFRNSILSSLGD-CIYVLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ L L ++ + + +GKV M+KLF+EMLEA
Sbjct: 169 YEAGQHMEDPRRAGKM----LMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEA 223
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 98.6 bits (245), Expect = 5e-25
Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 15/246 (6%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
SL ++M+ ALL EP +L + + + L++L DRELV +I WAK++PGF
Sbjct: 3 SLTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFV 62
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQAREC-GFSEIYQQ 189
DL+L+DQ+ LL+ W EIL + + +RS+ H GK+ FA +L+LD Q + G EI+
Sbjct: 63 DLTLHDQVHLLECAWLEILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGMVEIFDM 121
Query: 190 VKHSGS---LDGIKEEE--LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244
+ + S + ++ EE + + L+ V + + S E + ++
Sbjct: 122 LLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLI 181
Query: 245 QTGACGTLVLANSDVKLDEFSSLKKFRNSILSSLGD-CIYVLRFWSTVHKDGKVLMNKLF 303
A L L + + L ILS + + ++ V + L
Sbjct: 182 HLMAKAGLTLQQQHQR---LAQL----LLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLL 234
Query: 304 VEMLEA 309
+EML+A
Sbjct: 235 LEMLDA 240
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 95.2 bits (236), Expect = 1e-23
Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 17/241 (7%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L + EPE+L ++ D T + + +L+ L R+++ + WAK IPGF +L L+D
Sbjct: 3 LVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDD 62
Query: 137 QMRLLQSTWAEILTLTIAYRSLPH-CAGKIRFASDLVLDERQARECGFSEIYQQV-KHSG 194
QM LLQ +W ++ + +RS A + FA DL+++E++ + + + S
Sbjct: 63 QMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDMYDQCKHMLYVSS 122
Query: 195 SLDGIK--EEE--LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTGACG 250
L ++ EE + L L+ G + + + + + R+
Sbjct: 123 ELHRLQVSYEEYLCMKTLLLLSSVPKDGLK-SQELFDEIRMTYIKELGKAIVKRE----- 176
Query: 251 TLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEMLEAY 310
NS F L K + + + + F + + K + ++ E++
Sbjct: 177 ----GNSSQNWQRFYQLTK-LLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITNQ 231
Query: 311 L 311
+
Sbjct: 232 I 232
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 92.1 bits (228), Expect = 9e-23
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 28/243 (11%)
Query: 76 KMLEALLLCEP--EMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLS 133
++LEA L EP E + + ++ D++L ++ WAK+IP F++L
Sbjct: 6 RILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELP 65
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKHS 193
L+DQ+ LL++ W E+L + ++RS+ I A+ L + A G I+ +V
Sbjct: 66 LDDQVILLRAGWNELLIASFSHRSIAVK-DGILLATGLHVHRNSAHSAGVGAIFDRVLTE 124
Query: 194 GSLD----GIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR---QT 246
+ + EL +V + S A EA + +++ Y ++ Q
Sbjct: 125 LVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQP 184
Query: 247 GACGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEM 306
G L+L +L S+ + L G ++ +EM
Sbjct: 185 GRFAKLLL-----RLPALRSI-------------GLKCLEHLFFFKLIGDTPIDTFLMEM 226
Query: 307 LEA 309
LEA
Sbjct: 227 LEA 229
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 90.9 bits (225), Expect = 4e-22
Identities = 31/117 (26%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 77 MLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLND 136
++ L+ EP+++ + + D + + SL+ L +R+L+ ++ W+K +PGF +L ++D
Sbjct: 6 LINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDD 65
Query: 137 QMRLLQSTWAEILTLTIAYRSLPH-CAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
Q+ L+Q +W ++ + +RS H + FA DL+L+E++ +E F + +
Sbjct: 66 QITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQ 122
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 90.5 bits (224), Expect = 5e-22
Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 19/247 (7%)
Query: 71 SLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFT 130
+L +++ LL EP + V S + SL+ L D+ELV +IGWAK+IPGF
Sbjct: 1 TLSPEQLVLTLLEAEPPNVLV-SRPSMPFTEASMMMSLTKLADKELVHMIGWAKKIPGFV 59
Query: 131 DLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECG-----FSE 185
+LSL DQ+RLL+S W E+L + + +RS+ H GK+ FA DLVLD + + F
Sbjct: 60 ELSLLDQVRLLESCWMEVLMVGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGILEIFDM 118
Query: 186 IYQQVKHSGSLDGIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245
+ L ++ +E LC+ + + Y +AS ++ + +
Sbjct: 119 LLATTSRFRELK-LQHKEY---LCVKAMILLNSSMYPLASANQEAESSRKLTHLLNAVTD 174
Query: 246 TGACGTLVLANSDVKLDEFSSLKKFRN--SILSSLGD-CIYVLRFWSTVHKDGKVLMNKL 302
LV + + + N +LS + + ++ V + L
Sbjct: 175 A-----LVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMKCKNVVPVYDL 229
Query: 303 FVEMLEA 309
+EML A
Sbjct: 230 LLEMLNA 236
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 89.0 bits (220), Expect = 2e-21
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 16/242 (6%)
Query: 74 ENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLS 133
+ L L EP ++ + Q D ++SL++L +R+LV ++ WAK +PGF +L
Sbjct: 2 QPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLH 61
Query: 134 LNDQMRLLQSTWAEILTLTIAYRSLPHCAGK-IRFASDLVLDERQARECGFSEI----YQ 188
++DQM ++Q +W ++ + +RS + + + FA DLV +E + +
Sbjct: 62 VDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRH 121
Query: 189 QVKHSGSLDGIKEE-ELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
+ G L +E + L L G + + + + + ++
Sbjct: 122 LSQEFGWLQITPQEFLCMKALLLFSIIPVDGLK-NQKFFDELRMNYIKELDRIIACKR-- 178
Query: 248 ACGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEML 307
N F L K +S+ + V ++ E++
Sbjct: 179 -------KNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEII 231
Query: 308 EA 309
Sbjct: 232 SV 233
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 86.2 bits (213), Expect = 1e-20
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 83 LCEPEMLTVRSETPQSDPT-LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLL 141
LC+ T S L + S+L + ++ I+ +AK++PGFT LS+ DQ+ LL
Sbjct: 23 LCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLL 82
Query: 142 QSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
++ +IL L I R P + F+ L L+ Q GF + V
Sbjct: 83 KAACLDILMLRICTRYTPEQ-DTMTFSDGLTLNRTQMHNAGFGPLTDLVFA 132
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 87.1 bits (215), Expect = 1e-20
Identities = 38/274 (13%), Positives = 87/274 (31%), Gaps = 56/274 (20%)
Query: 75 NKMLEALLLCEPEM-------LTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
+++EA E + L V + +++L + +++L ++ +A+ +P
Sbjct: 4 ERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMP 63
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC-------------------------- 161
F + L+DQ+ LL++ W E+L +A+ S+
Sbjct: 64 HFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQ 123
Query: 162 AGKIRFASDLVLDERQARECGFSEIYQQ-----VKHSGSLDGIKEEELPRRLCLVCGDVA 216
++ A + G S I+ + L+ + E + ++
Sbjct: 124 PQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILY---- 179
Query: 217 SGFHYGVASCEACKAFFKRTIQVYSGY-RQTGACGTLVLANSDVKLDEFSSLKKFRNSIL 275
+ G+ S + ++ + R A ++L S+
Sbjct: 180 NPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSI-------- 231
Query: 276 SSLGDCIYVLRFWSTVHKDGKVLMNKLFVEMLEA 309
+ + +LF+E LEA
Sbjct: 232 -----SLKCQDHLFLFRITSDRPLEELFLEQLEA 260
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 85.5 bits (211), Expect = 3e-20
Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 34/252 (13%)
Query: 76 KMLEALLLCEPE--------MLTVRSETPQSDPT--LQTINSLSDLYDRELVCIIGWAKQ 125
++ LL CEP+ M ++ E + L L + D+ L I+ WA+
Sbjct: 5 HLILELLKCEPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWARS 64
Query: 126 IPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC-AGKIRFASDLVLDERQA---REC 181
F +L ++DQM+LLQ+ W+E+L L YR + H G I + +D E
Sbjct: 65 SIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEV 124
Query: 182 GFSEIYQQVKH-SGSLDGIK--EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
F+ + + L ++ + E +CL + S + + + + ++
Sbjct: 125 AFNNLLSLAQELVVRLRSLQFDQREF---VCLKFLVLFSSDVKNLENLQLVEGVQEQVNA 181
Query: 239 VYSGYRQTGACGTLVLANSDVKLDEFSSLKKFRNSILSSLGD-CIYVLRFWSTVHKDGKV 297
Y + N + ++F L L L + H +G V
Sbjct: 182 ALLDY---------TVCNYPQQTEKFGQL----LLRLPELRAISKQAEDYLYYKHVNGDV 228
Query: 298 LMNKLFVEMLEA 309
N L +EML A
Sbjct: 229 PYNNLLIEMLHA 240
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 84.3 bits (208), Expect = 7e-20
Identities = 46/243 (18%), Positives = 73/243 (30%), Gaps = 29/243 (11%)
Query: 75 NKMLEALLLCEPEM--LTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDL 132
++ + + P+ L QS + L + I +A++IPG+ DL
Sbjct: 6 TALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDL 65
Query: 133 SLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
DQ L QS E+ L +AYR+ K+ F + VL Q F E +
Sbjct: 66 LPEDQELLFQSASLELFVLRLAYRARIDD-TKLIFCNGTVLHRTQCL-RSFGEWLNDIME 123
Query: 193 -SGSLD--GIKEEELP--RRLCLVCGDVASGFHYGVASC--EACKAFFKRTIQVYSGYRQ 245
S SL I L L+ V + + ++
Sbjct: 124 FSRSLHNLEIDISAFACLCALTLITERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKK 183
Query: 246 TGACGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVE 305
L+ KL E SL + L+ + + V L
Sbjct: 184 QHYFSRLLG-----KLPELRSL-------------SVQGLQRIFYLKLEDLVPAPALIEN 225
Query: 306 MLE 308
M
Sbjct: 226 MFV 228
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 82.8 bits (204), Expect = 3e-19
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 68 SIPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQ-----TINSLSDLYDRELVCIIGW 122
S+PS+ ALL E + S + ++ +I + + +L+ ++ W
Sbjct: 3 SLPSIN------ALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEW 56
Query: 123 AKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECG 182
AK IP F +L L+DQ+ LL++ E L L RS+ + +D ++
Sbjct: 57 AKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK-DVLLLGNDYIVPRHCPELAE 115
Query: 183 FSEIYQQV 190
S + ++
Sbjct: 116 MSRVSIRI 123
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 82.1 bits (202), Expect = 7e-19
Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 68 SIPSLEENKMLEA-LLLCEP----EMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGW 122
++ L ++LE L+ +P + L V ++ ++SL + ++++ ++ W
Sbjct: 2 AVQELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVW 61
Query: 123 AKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHC-----------------AGKI 165
A+ IP F+ L + DQ+ L++ +W E+L IA+RS+ +
Sbjct: 62 ARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLM 121
Query: 166 RFASDLVLDERQARECGFSEIYQQVKH 192
+ L A + G +I+ +V
Sbjct: 122 CLMPGMTLHRNSALQAGVGQIFDRVLS 148
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 79.3 bits (195), Expect = 5e-18
Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 42/255 (16%)
Query: 75 NKMLEALLLCEPEM--LTVRSETPQSDPTLQTINS-----LSDLYDRELVCIIGWAKQIP 127
+ ++ A + P M L D + ++ DL + I GWA++IP
Sbjct: 4 SALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIP 63
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
GF DL DQ L +S + E+ L +AYRS P GK+ F + +VL Q GF E
Sbjct: 64 GFADLPKADQDLLFESAFLELFVLRLAYRSNPVE-GKLIFCNGVVLHRLQC-VRGFGEWI 121
Query: 188 QQVKH-SGSLDGIK--EEELPRRLCLVCGDVASGFHYGVASCE--------ACKAFFKRT 236
+ S +L + + +G+ +
Sbjct: 122 DSIVEFSSNLQNMNIDISA----FSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHV 177
Query: 237 IQVYSGYRQTGACGTLVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGK 296
G + L+ KL E +L C L+ + +
Sbjct: 178 TFNNGGLNRPNYLSKLLG-----KLPELRTL-------------CTQGLQRIFYLKLEDL 219
Query: 297 VLMNKLFVEMLEAYL 311
V + ++ L
Sbjct: 220 VPPPAIIDKLFLDTL 234
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 78.5 bits (193), Expect = 1e-17
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 84 CEPEMLTVRSETPQSDPT---LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRL 140
PE + + L+ + + + + ++ +AK++P F +L DQ+ L
Sbjct: 35 FLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIIL 94
Query: 141 LQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
L+ EI++L A R P + ++ + Q + G + +
Sbjct: 95 LKGCCMEIMSLRAAVRYDPES-ETLTLNGEMAVTRGQLKNGGLGVVSDAIFD 145
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 75.1 bits (184), Expect = 2e-16
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQ-------SDPTLQTINSLSDLYDRELVCIIGWAKQIP 127
++ A L P + Q + DL L I WA++IP
Sbjct: 4 TSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIP 63
Query: 128 GFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIY 187
GF +LS DQ LL+S + E+ L +AYRS P GK+ F S LVL Q GF +
Sbjct: 64 GFAELSPADQDLLLESAFLELFILRLAYRSKPGE-GKLIFCSGLVLHRLQC-ARGFGDWI 121
Query: 188 QQVKH 192
+
Sbjct: 122 DSILA 126
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 73.5 bits (180), Expect = 6e-16
Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 69 IPSL--EENKMLEALLLCE-------PEMLTVRSETPQSDPTLQTINS----LSDLYDRE 115
+P L + ++ L+ + E L ++T QSD + + ++++
Sbjct: 1 VPPLTANQKSLIARLVWYQEGYEQPSEEDLKRVTQTWQSDEDDEDSDMPFRQITEMTILT 60
Query: 116 LVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDE 175
+ I+ +AK +PGF +S +DQ+ LL++ +E++ L +A R + FA++
Sbjct: 61 VQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAAT-DSVLFANNQAYTR 119
Query: 176 RQARECGFSEIYQQVKH 192
R+ G + + + + H
Sbjct: 120 DNYRKAGMAYVIEDLLH 136
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 69.7 bits (170), Expect = 7e-16
Identities = 43/53 (81%), Positives = 49/53 (92%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYR 53
NIEY+CPA+N+CEI KRRRK+CQACRF K L+ GMLKEGVRLDRVRGGRQKY+
Sbjct: 38 NIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRGGRQKYK 90
Score = 57.3 bits (138), Expect = 2e-11
Identities = 31/35 (88%), Positives = 35/35 (100%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
+P+RLCLVCGD+ASG+HYGVASCEACKAFFKRTIQ
Sbjct: 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQ 36
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 72.8 bits (178), Expect = 1e-15
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 75 NKMLEALLLCEPEMLTVR---------SETPQSDPTLQTINSLSDLYDRELVCIIGWAKQ 125
+++ A L C + + ++ D Q ++L + I+ +AKQ
Sbjct: 10 QQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQ 69
Query: 126 IPGFTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSE 185
+PGF L DQ+ LL+++ EI+ L A R I F D + G
Sbjct: 70 VPGFLQLGREDQIALLKASTIEIMLLETARRYNHET-ECITFLKDFTYSKDDFHRAGLQV 128
Query: 186 IY 187
+
Sbjct: 129 EF 130
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 70.4 bits (172), Expect = 1e-14
Identities = 32/236 (13%), Positives = 74/236 (31%), Gaps = 26/236 (11%)
Query: 83 LCEPEMLTVRSETPQSDPT-----LQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L + E V + P + + + +AK IP F+ L LNDQ
Sbjct: 45 LWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQ 104
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDER-QARECGFSEIYQQVKH-SGS 195
+ LL+ E + +A + S V E ++ FS+I + +
Sbjct: 105 VTLLKYGVHEAIFAMLASIVNKDG-LLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVK 163
Query: 196 LD--GIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGY-RQTGACGTL 252
+ + + +L + + G G+ + +A ++ + +
Sbjct: 164 FNALELDDSDL---ALFIAAIILCGDRPGLMNVPRVEAIQDTILRALEFHLQANHPDAQQ 220
Query: 253 VLANSDVKLDEFSSLKKFRNSILSSLGDCIYVLRFWSTVHKDGKVLMNKLFVEMLE 308
+ K+ + L + ++ + + ++ L E+ +
Sbjct: 221 LFPKLLQKMADLRQLVTEHA-------QMMQRIK-----KTETETSLHPLLQEIYK 264
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 65.1 bits (158), Expect = 3e-14
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNP 56
+ +Y C A+ DC ++KRRR CQ CRFQKCL GM+KE VR D ++G R + P
Sbjct: 34 SAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 89
Score = 53.5 bits (128), Expect = 4e-10
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244
C VCGD AS HYGV +CE CK FFKRT+Q + Y
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYI 38
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 69.7 bits (170), Expect = 3e-14
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 82 LLCEPEMLTVRSETPQSDPTLQTINSL----SDLYDRELVCIIGWAKQIPGFTDLSLNDQ 137
L E +V + P +D + I SL +D+ II +AK I F DL + DQ
Sbjct: 72 LQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQ 131
Query: 138 MRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
+ LL+ E+ L L + + +
Sbjct: 132 ISLLKGAAFELCQLRFNTVFNAE--TGTWECGRLSYCLEDTAGGFQQLLLEPMLK 184
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 69.0 bits (168), Expect = 3e-14
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 2/110 (1%)
Query: 83 LCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQ 142
+ L E Q+ + + ++ +AK+I GF +L NDQ+ LL+
Sbjct: 38 ITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK 97
Query: 143 STWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
+ E++ + + + + G + V
Sbjct: 98 AGSLEVVFIRMCRAFDSQ--NNTVYFDGKYASPDVFKSLGCEDFISFVFE 145
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 67.0 bits (163), Expect = 1e-13
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 4/118 (3%)
Query: 75 NKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
+ ++++ + + L+++ + ++ + K++PGF L
Sbjct: 14 HFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDH 73
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
DQ+ LL+ + E + L A K+ +L+ER E +
Sbjct: 74 EDQIALLKGSAVEAMFLRSAEI----FNKKLPSGHSDLLEERIRNSGISDEYITPMFS 127
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 65.0 bits (158), Expect = 9e-13
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 78 LEALLLCEPEM---LTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSL 134
+ +L++ E ++ + + ++ + I +AK IPGF +L L
Sbjct: 46 MNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDL 105
Query: 135 NDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDER-QARECGFSEIYQQVKH 192
NDQ+ LL+ EI+ +A I + E ++ F + +
Sbjct: 106 NDQVTLLKYGVHEIIYTMLASLMNKDG-VLISEGQGFMTREFLKSLRKPFGDFMEPKFE 163
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 60.7 bits (147), Expect = 1e-12
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 204 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244
+ +C +CGD +SG HYGV SCE CK FFKRT++ Y
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYT 43
Score = 59.2 bits (143), Expect = 4e-12
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 46
++ YTC + DC I+KR+R CQ CR+QKCL GM +E V+ +R R
Sbjct: 39 DLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 61.7 bits (149), Expect = 8e-12
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Query: 96 PQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIAY 155
QS + + ++ +AK+I GF +L NDQ+ LL+S E++ + +
Sbjct: 43 YQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCR 102
Query: 156 RSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
P + + G ++ +
Sbjct: 103 AFNPL--NNTVLFEGKYGGMQMFKALGSDDLVNEAFD 137
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 58.1 bits (140), Expect = 9e-12
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGR 49
+ Y C CE++ R+ CQ CR +KCL GM E V + +
Sbjct: 34 SAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMK 82
Score = 52.3 bits (125), Expect = 1e-09
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
LCLVCGD ASG+HY +CE CK FF+R++
Sbjct: 2 LCLVCGDRASGYHYNALTCEGCKGFFRRSVT 32
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 58.1 bits (140), Expect = 1e-11
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQK 51
+TCP + DC I K R+ CQACR ++C+ GM+KE + D +++
Sbjct: 34 KALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKRE 84
Score = 55.8 bits (134), Expect = 7e-11
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
R+C VCGD A+GFH+ +CE CK FF+R+++
Sbjct: 1 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMK 32
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 60.5 bits (146), Expect = 3e-11
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 93 SETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLT 152
P P L + +D+ ++ +I + K +P F L + DQ+ LL+ EI +
Sbjct: 44 QPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIV 103
Query: 153 IAYRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQVKH 192
+ E AR E + + H
Sbjct: 104 LNTTFCLQT-QNFLCGPLRYTIEDGARVGFQVEFLELLFH 142
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 56.3 bits (135), Expect = 3e-11
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245
P++ CL+CGD ASG HYG +C +CK FFKR + Y
Sbjct: 1 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLC 41
Score = 50.1 bits (119), Expect = 5e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKE 38
+Y C + NDC I+K RRK C +CR +KC GM
Sbjct: 36 KQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLG 73
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 60.1 bits (145), Expect = 3e-11
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
Query: 69 IPSLEENKMLEALLLCEPEMLTVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPG 128
P+ + + +V E Q L + L+DL + +IG+AK IPG
Sbjct: 27 DPTYSDFCQFRPPVRVNDGGGSVTLELSQ----LSMLPHLADLVSYSIQKVIGFAKMIPG 82
Query: 129 FTDLSLNDQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDERQARECGFSEI 186
F DL+ DQ+ LL+S+ E++ L D + G S
Sbjct: 83 FRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLE 140
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 59.7 bits (144), Expect = 3e-11
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 95 TPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTIA 154
P L + +D+ + II + K +P F L++ DQ+ LL+ EIL +++
Sbjct: 45 FQPRGPVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLN 104
Query: 155 YRSLPHCAGKIRFASDLVLDERQARECGFSEIYQQ 189
+ F L A GF + +
Sbjct: 105 TTFCLQT--ENFFCGPLCYKMEDAVHAGFQYEFLE 137
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 55.4 bits (133), Expect = 6e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 4 YTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 44
C + +C I + R CQ CRF+KCL GM ++ VR R
Sbjct: 38 KRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGR 78
Score = 54.2 bits (130), Expect = 2e-10
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
LC VCGDVASGFHYGV +CE CK FF+R+IQ
Sbjct: 2 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQ 32
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 54.3 bits (130), Expect = 1e-10
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 209 CLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYR 244
C VC D +SG+HYGV++CE CK FF+R+IQ Y
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYT 37
Score = 51.2 bits (122), Expect = 2e-09
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLD 43
N+ YTC +C INK R CQ CR QKC GM KE VR D
Sbjct: 33 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRND 75
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 54.0 bits (129), Expect = 2e-10
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 205 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 238
R C VC D ASG+HYGV SCE CKAFFKR+IQ
Sbjct: 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQ 36
Score = 47.0 bits (111), Expect = 6e-08
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLK 37
+ +Y CPA+N C I+K RRK+CQACR +KC GM+K
Sbjct: 38 HNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 74
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 52.4 bits (125), Expect = 6e-10
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 207 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQTG 247
R CLVC D ASG HYGV +CE CKAFFKR ++ Y
Sbjct: 1 RPCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKY 41
Score = 47.4 bits (112), Expect = 4e-08
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKE 38
Y C C I+K RRK C ACR++KCL+ GM E
Sbjct: 34 QHNYLCKYEGKCIIDKIRRKNCPACRYRKCLQAGMNLE 71
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 56.2 bits (135), Expect = 9e-10
Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 78 LEALLLCEPEML--TVRSETPQSDPTLQTINSLSDLYDRELVCIIGWAKQIPGFTDLSLN 135
+E L + E ++ V + + ++ + + + +AK IPGF +L LN
Sbjct: 43 METLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLN 102
Query: 136 DQMRLLQSTWAEILTLTIAYRSLPHCAGKIRFASDLVLDER-QARECGFSEIYQQVKH 192
DQ+ LL+ E + ++ + + + + E ++ F +I +
Sbjct: 103 DQVTLLKYGVYEAIFAMLSSVMNKDG-MLVAYGNGFITREFLKSLRKPFCDIMEPKFD 159
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 49.8 bits (118), Expect = 1e-08
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 1 NIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRGGRQKYRR 54
+ Y+C C I+K R CQ CRF+KC+ GM + V D R ++K
Sbjct: 37 HPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIE 90
Score = 48.2 bits (114), Expect = 4e-08
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 208 LCLVCGDVASGFHYGVASCEACKAFFKRTIQVYSGYRQ 245
LC+VCGD A+G+HY +CE CK FF+RTIQ
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSY 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,194,746
Number of extensions: 55889
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 55
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)