Query psy11507
Match_columns 113
No_of_seqs 108 out of 1034
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:11:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebl_A COUP transcription fact 99.9 2.3E-27 7.8E-32 157.4 5.6 74 39-112 7-85 (89)
2 2han_A Protein ultraspiracle; 99.9 1.9E-27 6.4E-32 159.0 4.8 75 38-112 9-88 (93)
3 3cbb_A HNF-4-alpha, hepatocyte 99.9 2.3E-27 7.8E-32 154.0 5.0 72 41-112 2-78 (78)
4 1dsz_B RXR-alpha, retinoic aci 99.9 2.5E-27 8.7E-32 156.0 4.8 74 39-112 5-83 (85)
5 1hcq_A Protein (estrogen recep 99.9 7.1E-27 2.4E-31 153.6 4.8 73 39-111 4-81 (84)
6 1dsz_A RAR-alpha, retinoic aci 99.9 6.7E-27 2.3E-31 154.2 4.6 74 39-112 4-82 (86)
7 1ynw_B Retinoic acid receptor 99.9 7.8E-27 2.7E-31 157.5 4.6 74 39-112 3-81 (99)
8 1lo1_A Steroid hormone recepto 99.9 1.1E-26 3.6E-31 156.6 4.2 75 38-112 3-82 (98)
9 1cit_A NGFI-B, protein (orphan 99.9 2.1E-26 7.2E-31 152.8 5.2 72 40-111 1-77 (89)
10 2a66_A Orphan nuclear receptor 99.9 2.9E-26 9.8E-31 158.0 4.6 75 38-112 8-87 (113)
11 1a6y_A Orphan nuclear receptor 99.9 2.9E-26 9.8E-31 153.5 3.7 74 39-112 7-86 (94)
12 4hn5_A Glucocorticoid receptor 99.9 3.9E-26 1.3E-30 158.2 4.5 75 37-111 27-106 (117)
13 3g9m_A Glucocorticoid receptor 99.9 5.5E-26 1.9E-30 150.9 4.9 73 39-111 2-79 (90)
14 2han_B Ecdysone receptor; tran 99.9 8.6E-26 2.9E-30 156.8 5.4 74 38-111 7-85 (119)
15 1kb2_A Vitamin D3 receptor; VD 99.9 7.1E-26 2.4E-30 155.4 4.6 70 38-107 5-79 (110)
16 2nll_B Protein (thyroid hormon 99.9 1.1E-25 3.9E-30 152.8 4.8 72 40-111 2-80 (103)
17 1r4i_A Androgen receptor; AR, 99.9 1.9E-25 6.5E-30 152.2 4.7 70 38-107 6-80 (105)
18 3dzy_A Retinoic acid receptor 99.9 1.4E-23 4.9E-28 172.1 4.3 73 39-111 137-214 (467)
19 3dzy_D Peroxisome proliferator 99.9 8.2E-23 2.8E-27 165.4 5.6 74 37-112 48-127 (419)
20 2lze_A A primordial catalytic 99.5 4.6E-16 1.6E-20 102.6 -0.7 56 48-105 13-73 (87)
21 2vut_I AREA, nitrogen regulato 63.8 3.1 0.00011 23.2 1.4 30 40-69 2-35 (43)
22 2lze_A A primordial catalytic 59.9 5.6 0.00019 25.3 2.3 18 37-54 15-32 (87)
23 3dfx_A Trans-acting T-cell-spe 56.8 6.3 0.00022 23.7 2.0 31 39-69 7-41 (63)
24 2crw_A ARF GAP 3, ADP-ribosyla 49.5 7.5 0.00026 27.1 1.7 32 38-69 28-62 (149)
25 2kae_A GATA-type transcription 47.9 9.6 0.00033 23.4 1.8 30 39-69 8-43 (71)
26 1gnf_A Transcription factor GA 47.2 9.3 0.00032 21.5 1.6 30 40-69 5-38 (46)
27 2crr_A Stromal membrane-associ 46.4 6.8 0.00023 27.0 1.1 30 39-68 29-61 (141)
28 2iqj_A Stromal membrane-associ 46.2 5.8 0.0002 27.1 0.7 30 39-68 27-59 (134)
29 3dwd_A ADP-ribosylation factor 44.8 8.8 0.0003 26.8 1.5 30 39-68 38-70 (147)
30 4gat_A Nitrogen regulatory pro 41.8 15 0.00051 22.2 2.0 31 38-68 8-42 (66)
31 2p57_A GTPase-activating prote 41.4 8.6 0.0003 26.7 1.0 30 39-68 37-69 (144)
32 2owa_A Arfgap-like finger doma 41.2 7.3 0.00025 26.8 0.6 30 39-68 36-68 (138)
33 2olm_A Nucleoporin-like protei 40.2 6.5 0.00022 27.0 0.2 30 39-68 25-57 (140)
34 2pv0_B DNA (cytosine-5)-methyl 38.7 19 0.00065 28.8 2.7 66 39-104 50-128 (386)
35 3sub_A ADP-ribosylation factor 35.8 10 0.00034 27.0 0.6 30 39-68 22-54 (163)
36 2cs3_A Protein C14ORF4, MY039 35.1 68 0.0023 20.4 4.4 48 37-84 13-67 (93)
37 3o47_A ADP-ribosylation factor 35.1 16 0.00056 27.4 1.8 30 39-68 37-69 (329)
38 3j21_e 50S ribosomal protein L 28.8 11 0.00037 22.7 -0.2 24 38-63 16-39 (62)
39 2l43_A N-teminal domain from h 26.7 35 0.0012 21.2 2.0 53 37-95 23-75 (88)
40 4hc9_A Trans-acting T-cell-spe 25.9 64 0.0022 21.2 3.3 33 39-71 59-95 (115)
41 3j20_P 30S ribosomal protein S 24.7 46 0.0016 19.4 2.1 27 37-63 16-43 (56)
42 3iz6_N 40S ribosomal protein S 24.4 39 0.0013 19.7 1.7 28 35-62 14-42 (56)
43 1weu_A Inhibitor of growth fam 24.0 84 0.0029 19.8 3.4 22 38-63 35-58 (91)
44 3lju_X ARF-GAP with dual PH do 24.0 23 0.00078 27.7 0.8 31 39-69 34-67 (386)
45 3jue_A Arfgap with coiled-coil 22.6 33 0.0011 26.4 1.5 30 39-68 45-77 (368)
46 3a1b_A DNA (cytosine-5)-methyl 22.3 61 0.0021 22.8 2.7 66 39-104 36-114 (159)
47 2lbm_A Transcriptional regulat 21.1 72 0.0024 21.8 2.8 32 38-69 13-53 (142)
48 3u5c_d S36, YS29, 40S ribosoma 21.1 35 0.0012 20.0 1.0 28 36-63 15-43 (56)
49 2xzm_N RPS29E; ribosome, trans 20.1 40 0.0014 19.6 1.2 27 36-62 14-41 (55)
No 1
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=157.44 Aligned_cols=74 Identities=30% Similarity=0.458 Sum_probs=67.7
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhccC
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||+|||..+..+.+|.
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 85 (89)
T 2ebl_A 7 GIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSG 85 (89)
T ss_dssp SCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCC
T ss_pred CCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCC
Confidence 457999999999999999999999999999999999999998888853 36999999999999999998888775
No 2
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.94 E-value=1.9e-27 Score=158.96 Aligned_cols=75 Identities=35% Similarity=0.556 Sum_probs=67.4
Q ss_pred CCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCCC-----CCcchHHhHhHHhcCCccchhhccC
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQKK-----SSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~~-----~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
...+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+. .|++|||+|||+|||..+..+..|.
T Consensus 9 ~~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 88 (93)
T 2han_A 9 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQ 88 (93)
T ss_dssp -CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC-
T ss_pred CCCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccC
Confidence 35689999999999999999999999999999999999999998888643 5999999999999999998887774
No 3
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=153.98 Aligned_cols=72 Identities=28% Similarity=0.509 Sum_probs=65.4
Q ss_pred cceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhccC
Q psy11507 41 LCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 41 ~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||++||..+..+..|+
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 5999999999999999999999999999999999999998888853 36999999999999999998888874
No 4
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.94 E-value=2.5e-27 Score=156.00 Aligned_cols=74 Identities=34% Similarity=0.571 Sum_probs=68.0
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhccC
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||+|||..+..+..|.
T Consensus 5 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 83 (85)
T 1dsz_B 5 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 83 (85)
T ss_dssp CEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCC
T ss_pred CCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccC
Confidence 467999999999999999999999999999999999999999888863 36999999999999999998888875
No 5
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.93 E-value=7.1e-27 Score=153.58 Aligned_cols=73 Identities=40% Similarity=0.602 Sum_probs=61.4
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhcc
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNR 111 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~ 111 (113)
..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||++||..+..+.+|
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 81 (84)
T 1hcq_A 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDR 81 (84)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC-------
T ss_pred CCcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccC
Confidence 457999999999999999999999999999999999999998888853 3699999999999999999887776
No 6
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.93 E-value=6.7e-27 Score=154.25 Aligned_cols=74 Identities=32% Similarity=0.568 Sum_probs=65.2
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCCC-----CCcchHHhHhHHhcCCccchhhccC
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQKK-----SSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~~-----~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+. .|++|||+|||++||..+..+..|.
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 82 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC--
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhccc
Confidence 4579999999999999999999999999999999999999998888643 5999999999999999998887764
No 7
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.93 E-value=7.8e-27 Score=157.55 Aligned_cols=74 Identities=34% Similarity=0.571 Sum_probs=63.7
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhccC
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||+|||..+..+..|.
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 81 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 81 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC----
T ss_pred CCCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccc
Confidence 457999999999999999999999999999999999999999888863 36999999999999999988777764
No 8
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.93 E-value=1.1e-26 Score=156.64 Aligned_cols=75 Identities=49% Similarity=0.739 Sum_probs=68.2
Q ss_pred CCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCCC-----CCcchHHhHhHHhcCCccchhhccC
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQKK-----SSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~~-----~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
+..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+. .|++|||+|||+|||..+..+.+|.
T Consensus 3 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (98)
T 1lo1_A 3 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRV 82 (98)
T ss_dssp CCCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCC
T ss_pred CCCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHeecccc
Confidence 35679999999999999999999999999999999999999999888754 5999999999999999988777663
No 9
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.93 E-value=2.1e-26 Score=152.75 Aligned_cols=72 Identities=39% Similarity=0.601 Sum_probs=65.0
Q ss_pred CcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhcc
Q psy11507 40 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNR 111 (113)
Q Consensus 40 ~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~ 111 (113)
++|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||++||..+..+..|
T Consensus 1 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~ 77 (89)
T 1cit_A 1 GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDS 77 (89)
T ss_dssp CCCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGG
T ss_pred CCCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeeccc
Confidence 36999999999999999999999999999999999999999888863 3699999999999999998776543
No 10
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.92 E-value=2.9e-26 Score=158.02 Aligned_cols=75 Identities=35% Similarity=0.611 Sum_probs=66.9
Q ss_pred CCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhccC
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
...+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||+|||..+..+..|.
T Consensus 8 ~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~ 87 (113)
T 2a66_A 8 LEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRM 87 (113)
T ss_dssp --CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCC
T ss_pred CCCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccc
Confidence 3567999999999999999999999999999999999999999888853 36999999999999999988877763
No 11
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.92 E-value=2.9e-26 Score=153.46 Aligned_cols=74 Identities=42% Similarity=0.651 Sum_probs=65.9
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccce-ecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhccC
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASL-VSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNRF 112 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~-~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~~ 112 (113)
..+|.||+++++|+||||.+|++|++||||++..+..| .|..+++|.+ ..|++|||+|||++||..+..+.+|.
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 86 (94)
T 1a6y_A 7 VLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRI 86 (94)
T ss_dssp -CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC-
T ss_pred CCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcC
Confidence 46799999999999999999999999999999998888 5998888863 36999999999999999998887774
No 12
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.92 E-value=3.9e-26 Score=158.18 Aligned_cols=75 Identities=33% Similarity=0.596 Sum_probs=62.7
Q ss_pred CCCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhcc
Q psy11507 37 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNR 111 (113)
Q Consensus 37 ~~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~ 111 (113)
.++.+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||++||..+..+..|
T Consensus 27 ~~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR 106 (117)
T 4hn5_A 27 APPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK 106 (117)
T ss_dssp ---CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC-----
T ss_pred CCCCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhcccc
Confidence 34567999999999999999999999999999999999999998888853 3799999999999999998766554
No 13
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.92 E-value=5.5e-26 Score=150.85 Aligned_cols=73 Identities=30% Similarity=0.559 Sum_probs=66.3
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCCC-----CCcchHHhHhHHhcCCccchhhcc
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQKK-----SSQIPKEKYNLAYLMSDSLDTTNR 111 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~~-----~C~~CR~~kcl~~GM~~~~~~~~~ 111 (113)
..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+. .|++|||+|||++||..+..+..|
T Consensus 2 ~~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r 79 (90)
T 3g9m_A 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK 79 (90)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC
T ss_pred CCcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhcccc
Confidence 3579999999999999999999999999999999999999988888643 699999999999999998776655
No 14
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.92 E-value=8.6e-26 Score=156.82 Aligned_cols=74 Identities=35% Similarity=0.587 Sum_probs=66.0
Q ss_pred CCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCCC-----CCcchHHhHhHHhcCCccchhhcc
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQKK-----SSQIPKEKYNLAYLMSDSLDTTNR 111 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~~-----~C~~CR~~kcl~~GM~~~~~~~~~ 111 (113)
...+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+. .|++|||+|||+|||..+..+..|
T Consensus 7 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r 85 (119)
T 2han_B 7 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPEN 85 (119)
T ss_dssp CSCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSS
T ss_pred CCCcCeEeCCcCCcceECchhHHhhHHhhhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchh
Confidence 35679999999999999999999999999999999999999998888643 699999999999999998665543
No 15
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.92 E-value=7.1e-26 Score=155.39 Aligned_cols=70 Identities=30% Similarity=0.571 Sum_probs=62.7
Q ss_pred CCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccch
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLD 107 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~ 107 (113)
.+.+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||++||..+..
T Consensus 5 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v 79 (110)
T 1kb2_A 5 VPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFI 79 (110)
T ss_dssp --CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred cCCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhc
Confidence 3567999999999999999999999999999999999999999888863 369999999999999999744
No 16
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.92 E-value=1.1e-25 Score=152.78 Aligned_cols=72 Identities=35% Similarity=0.556 Sum_probs=63.8
Q ss_pred CcceEcCCCCcceeechhcchhhHHHHHHhHhhcc--ceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhcc
Q psy11507 40 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQARA--SLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNR 111 (113)
Q Consensus 40 ~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~--~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~ 111 (113)
.+|.|||++++|+||||.+|+||++||||++..+. .|.|..+++|.+ ..|++|||+|||+|||..+..+..|
T Consensus 2 ~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~ 80 (103)
T 2nll_B 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS 80 (103)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHH
T ss_pred CCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhh
Confidence 47999999999999999999999999999999875 789998888863 3699999999999999998765543
No 17
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.91 E-value=1.9e-25 Score=152.16 Aligned_cols=70 Identities=30% Similarity=0.586 Sum_probs=63.0
Q ss_pred CCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccch
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLD 107 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~ 107 (113)
+..+|.||+++++|+||||.+|++|++||||++..+..|.|..+++|.+ ..|++|||+|||+|||.....
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~ 80 (105)
T 1r4i_A 6 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGAR 80 (105)
T ss_dssp CCCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-
T ss_pred CCCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchh
Confidence 3568999999999999999999999999999999999999999888863 369999999999999998643
No 18
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.88 E-value=1.4e-23 Score=172.12 Aligned_cols=73 Identities=34% Similarity=0.591 Sum_probs=66.0
Q ss_pred CCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhcc
Q psy11507 39 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTNR 111 (113)
Q Consensus 39 ~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~~ 111 (113)
...|.|||++++|+||||.+|+||++||||++.++..|.|+.++.|.. ..|++|||+||+++||..+..+..|
T Consensus 137 ~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r 214 (467)
T 3dzy_A 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214 (467)
T ss_dssp CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCS
T ss_pred CCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhccc
Confidence 456999999999999999999999999999999999999999888853 3799999999999999998776655
No 19
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.87 E-value=8.2e-23 Score=165.38 Aligned_cols=74 Identities=39% Similarity=0.556 Sum_probs=62.4
Q ss_pred CCCCcceEcCCCCcceeechhcchhhHHHHHHhHhhcccee-cCCCCCCCC-----CCCcchHHhHhHHhcCCccchhhc
Q psy11507 37 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLV-SLRGHEPQK-----KSSQIPKEKYNLAYLMSDSLDTTN 110 (113)
Q Consensus 37 ~~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~-C~~~~~c~~-----~~C~~CR~~kcl~~GM~~~~~~~~ 110 (113)
.....|.|||++++|+||||.+|+||++||||++..+..|. |. ++|.. ..|++|||+||+++||.....+..
T Consensus 48 ~~~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c~--~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~ 125 (419)
T 3dzy_D 48 LMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCD--LNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFG 125 (419)
T ss_dssp --CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCCC--SCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCS
T ss_pred CCCCcCeECCCcCCCCccCcccchhhhHHHccchhccccccccc--CCCCcccccCccchhhhHHHHhhcccchhheecc
Confidence 34567999999999999999999999999999999988885 64 34542 379999999999999999887776
Q ss_pred cC
Q psy11507 111 RF 112 (113)
Q Consensus 111 ~~ 112 (113)
|.
T Consensus 126 R~ 127 (419)
T 3dzy_D 126 RM 127 (419)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.53 E-value=4.6e-16 Score=102.58 Aligned_cols=56 Identities=14% Similarity=0.050 Sum_probs=43.7
Q ss_pred CCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCCC-----CCcchHHhHhHHhcCCcc
Q psy11507 48 VASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQKK-----SSQIPKEKYNLAYLMSDS 105 (113)
Q Consensus 48 ~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~~-----~C~~CR~~kcl~~GM~~~ 105 (113)
+..+.||++. |.+|++||||++ ++..|+|+.+++|.+. .|++|||+|||+|||+..
T Consensus 13 p~~g~h~c~v-Cgd~asfFRRt~-~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~ 73 (87)
T 2lze_A 13 PRGGKHICAI-CGNNAEDYKHTD-MDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHH 73 (87)
T ss_dssp CSCCSSSCSS-SSSSSSSCTTTT-TSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSC
T ss_pred CCCCCEEccC-CCCccceECccc-CCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEec
Confidence 3445566654 666788899985 5677899998888543 699999999999999875
No 21
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=63.83 E-value=3.1 Score=23.16 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred CcceEcCCCCcc----eeechhcchhhHHHHHHh
Q psy11507 40 RLCLVCGDVASG----FHYGVASCEACKAFFKRT 69 (113)
Q Consensus 40 ~~C~VC~~~~~g----~hyGv~~C~~C~~FFRRs 69 (113)
..|..|+....- -..|...|++|..+|+..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 347777654321 135777899999998653
No 22
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=59.91 E-value=5.6 Score=25.33 Aligned_cols=18 Identities=22% Similarity=0.700 Sum_probs=14.0
Q ss_pred CCCCcceEcCCCCcceee
Q psy11507 37 LPRRLCLVCGDVASGFHY 54 (113)
Q Consensus 37 ~~~~~C~VC~~~~~g~hy 54 (113)
.....|.||+|.+.+|+-
T Consensus 15 ~g~h~c~vCgd~asfFRR 32 (87)
T 2lze_A 15 GGKHICAICGNNAEDYKH 32 (87)
T ss_dssp CCSSSCSSSSSSSSSCTT
T ss_pred CCCEEccCCCCccceECc
Confidence 345679999999988754
No 23
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=56.82 E-value=6.3 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCcceEcCCCCcc----eeechhcchhhHHHHHHh
Q psy11507 39 RRLCLVCGDVASG----FHYGVASCEACKAFFKRT 69 (113)
Q Consensus 39 ~~~C~VC~~~~~g----~hyGv~~C~~C~~FFRRs 69 (113)
...|..|+....- -..|...|++|..+|+..
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 4568888854331 245778999999999764
No 24
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.54 E-value=7.5 Score=27.12 Aligned_cols=32 Identities=25% Similarity=0.686 Sum_probs=25.5
Q ss_pred CCCcceEcCCCC---cceeechhcchhhHHHHHHh
Q psy11507 38 PRRLCLVCGDVA---SGFHYGVASCEACKAFFKRT 69 (113)
Q Consensus 38 ~~~~C~VC~~~~---~g~hyGv~~C~~C~~FFRRs 69 (113)
....|.-|+.+. ....||++.|..|.+..|..
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (149)
T 2crw_A 28 TNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSL 62 (149)
T ss_dssp TTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHH
T ss_pred CCCcCCCCcCCCCCcEEeccCEEEchhcchhhccC
Confidence 356799999654 34699999999999998663
No 25
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=47.88 E-value=9.6 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=20.4
Q ss_pred CCcceEcCCCCc-ce-----eechhcchhhHHHHHHh
Q psy11507 39 RRLCLVCGDVAS-GF-----HYGVASCEACKAFFKRT 69 (113)
Q Consensus 39 ~~~C~VC~~~~~-g~-----hyGv~~C~~C~~FFRRs 69 (113)
...|..|+.... .. .-| ..|++|..+|+..
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 467999985432 22 224 7899999998654
No 26
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=47.19 E-value=9.3 Score=21.49 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=19.6
Q ss_pred CcceEcCCCCcc----eeechhcchhhHHHHHHh
Q psy11507 40 RLCLVCGDVASG----FHYGVASCEACKAFFKRT 69 (113)
Q Consensus 40 ~~C~VC~~~~~g----~hyGv~~C~~C~~FFRRs 69 (113)
..|..|+....- -..|...|++|..+++..
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 457777754321 124567999999988653
No 27
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.45 E-value=6.8 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.609 Sum_probs=24.3
Q ss_pred CCcceEcCCCC---cceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVA---SGFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~---~g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+. ....||++.|..|.+..|.
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 61 (141)
T 2crr_A 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRN 61 (141)
T ss_dssp GSSCSSSCCSSCCSEETTTTEECCHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhc
Confidence 45799999654 3469999999999999866
No 28
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=46.17 E-value=5.8 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.638 Sum_probs=24.4
Q ss_pred CCcceEcCCCC---cceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVA---SGFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~---~g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+. ....||++.|..|.+..|.
T Consensus 27 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 59 (134)
T 2iqj_A 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRN 59 (134)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhc
Confidence 46799998654 3469999999999999866
No 29
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=44.81 E-value=8.8 Score=26.82 Aligned_cols=30 Identities=23% Similarity=0.706 Sum_probs=24.6
Q ss_pred CCcceEcCCCCc---ceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVAS---GFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~~---g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+.- ...||++.|..|.+..|.
T Consensus 38 N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~ 70 (147)
T 3dwd_A 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 70 (147)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCccCCCCCCCCCeEEecccEeEhHhhChHHhc
Confidence 567999997643 469999999999999865
No 30
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=41.79 E-value=15 Score=22.17 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=21.7
Q ss_pred CCCcceEcCCCCcc----eeechhcchhhHHHHHH
Q psy11507 38 PRRLCLVCGDVASG----FHYGVASCEACKAFFKR 68 (113)
Q Consensus 38 ~~~~C~VC~~~~~g----~hyGv~~C~~C~~FFRR 68 (113)
....|..|+...+- -..|...|++|..+|+.
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 35679999864332 23466899999999865
No 31
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=41.38 E-value=8.6 Score=26.72 Aligned_cols=30 Identities=27% Similarity=0.743 Sum_probs=24.4
Q ss_pred CCcceEcCCCC---cceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVA---SGFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~---~g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+. ....||++.|..|.+..|.
T Consensus 37 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 69 (144)
T 2p57_A 37 NKACFDCGAKNPSWASITYGVFLCIDCSGVHRS 69 (144)
T ss_dssp GGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHH
T ss_pred CCcCCCCcCCCCCeEEeccCEEEhhhchHHHcC
Confidence 56799998654 3469999999999999865
No 32
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=41.19 E-value=7.3 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.557 Sum_probs=24.2
Q ss_pred CCcceEcCCCC---cceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVA---SGFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~---~g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+. ....||++.|..|.+..|.
T Consensus 36 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 68 (138)
T 2owa_A 36 NRTCFDCESRNPTWLSLSFAVFICLNCSSDHRK 68 (138)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHT
T ss_pred CCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhC
Confidence 46799998654 3369999999999999865
No 33
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=40.23 E-value=6.5 Score=27.04 Aligned_cols=30 Identities=20% Similarity=0.593 Sum_probs=24.0
Q ss_pred CCcceEcCCCCc---ceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVAS---GFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~~---g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+.- ...||++.|..|.+..|.
T Consensus 25 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSSCCCEEETTTTEEECHHHHHHHTT
T ss_pred CCcCCCCCCCCCCceeeccCEEEchhccchhcc
Confidence 467999986543 369999999999999754
No 34
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.69 E-value=19 Score=28.82 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=40.1
Q ss_pred CCcceEcCCCC-cc--eeechhcchhhHHHHHHhHhhcc-----ce--ecCCCC---CCCCCCCcchHHhHhHHhcCCc
Q psy11507 39 RRLCLVCGDVA-SG--FHYGVASCEACKAFFKRTIQARA-----SL--VSLRGH---EPQKKSSQIPKEKYNLAYLMSD 104 (113)
Q Consensus 39 ~~~C~VC~~~~-~g--~hyGv~~C~~C~~FFRRsv~~~~-----~~--~C~~~~---~c~~~~C~~CR~~kcl~~GM~~ 104 (113)
...|..||... .- ..|.+..|..|+.+|........ .| .|..+. .|...+|..|-=++|++.-+.+
T Consensus 50 e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~ 128 (386)
T 2pv0_B 50 EDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGP 128 (386)
T ss_dssp GGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCT
T ss_pred cceeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcCh
Confidence 45799999653 22 36899999999999977655431 11 133332 2334456633337888865544
No 35
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=35.77 E-value=10 Score=27.00 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=24.3
Q ss_pred CCcceEcCCCCc---ceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVAS---GFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~~---g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+.- ...||++.|..|.+..|.
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCccccCCCCCCCeEEecCCeeEHHhhhHHhcC
Confidence 567999987543 368999999999999865
No 36
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=35.09 E-value=68 Score=20.41 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCCCcceEcCCCCcceeec-------hhcchhhHHHHHHhHhhccceecCCCCCC
Q psy11507 37 LPRRLCLVCGDVASGFHYG-------VASCEACKAFFKRTIQARASLVSLRGHEP 84 (113)
Q Consensus 37 ~~~~~C~VC~~~~~g~hyG-------v~~C~~C~~FFRRsv~~~~~~~C~~~~~c 84 (113)
...-.|.+|.++--..||= -.-|..|.--+-+.........|..+..|
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kC 67 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKC 67 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCC
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCcc
Confidence 3455799999887777772 23478886444444445566679888776
No 37
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=35.08 E-value=16 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.690 Sum_probs=24.8
Q ss_pred CCcceEcCCCCcc---eeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVASG---FHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~~g---~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+.-. ..||+..|..|.+..|.
T Consensus 37 n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~ 69 (329)
T 3o47_A 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 69 (329)
T ss_dssp TTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEecCCEEEChhhhhhhcc
Confidence 5679999975433 69999999999999876
No 38
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.81 E-value=11 Score=22.74 Aligned_cols=24 Identities=29% Similarity=0.708 Sum_probs=20.5
Q ss_pred CCCcceEcCCCCcceeechhcchhhH
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEACK 63 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~C~ 63 (113)
++.+|..||..+ +|.--..|.+|.
T Consensus 16 tH~lCrRCG~~s--yH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGRVS--YNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCSBC--EETTTTEETTTC
T ss_pred ceeeecccCcch--hccccccccccC
Confidence 578899999886 898888998885
No 39
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=26.66 E-value=35 Score=21.20 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=29.5
Q ss_pred CCCCcceEcCCCCcceeechhcchhhHHHHHHhHhhccceecCCCCCCCCCCCcchHHh
Q psy11507 37 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQARASLVSLRGHEPQKKSSQIPKEK 95 (113)
Q Consensus 37 ~~~~~C~VC~~~~~g~hyGv~~C~~C~~FFRRsv~~~~~~~C~~~~~c~~~~C~~CR~~ 95 (113)
.....|.||++......-..+.|.+|..-|.-....-..+ .. ..-.|..|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~v--P~----g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI--PE----GQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSC--CS----SCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCcc--CC----CceECccccCc
Confidence 3457899999875433345678888864443332222111 11 24468877664
No 40
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=25.86 E-value=64 Score=21.18 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCcceEcCCCCcc----eeechhcchhhHHHHHHhHh
Q psy11507 39 RRLCLVCGDVASG----FHYGVASCEACKAFFKRTIQ 71 (113)
Q Consensus 39 ~~~C~VC~~~~~g----~hyGv~~C~~C~~FFRRsv~ 71 (113)
...|..|+....- -..|...|++|..+|+..-.
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 4679999865422 34567899999999976533
No 41
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.66 E-value=46 Score=19.40 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=20.1
Q ss_pred CCCCcceEcCCCC-cceeechhcchhhH
Q psy11507 37 LPRRLCLVCGDVA-SGFHYGVASCEACK 63 (113)
Q Consensus 37 ~~~~~C~VC~~~~-~g~hyGv~~C~~C~ 63 (113)
.....|.|||.+. .-..||...|.-|-
T Consensus 16 rg~~rC~vcGr~~g~iRkfGL~~cR~cf 43 (56)
T 3j20_P 16 KGARRCIRCGQYGPIIRIQGLMLCRHCF 43 (56)
T ss_dssp STTCCCSSSCCSSSCCCTTTCCCCHHHH
T ss_pred CCceEeecCCCCcccccccCChHHHHHH
Confidence 3456799999874 44689988887763
No 42
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=24.39 E-value=39 Score=19.71 Aligned_cols=28 Identities=32% Similarity=0.724 Sum_probs=20.2
Q ss_pred CCCCCCcceEcCCCC-cceeechhcchhh
Q psy11507 35 EELPRRLCLVCGDVA-SGFHYGVASCEAC 62 (113)
Q Consensus 35 ~~~~~~~C~VC~~~~-~g~hyGv~~C~~C 62 (113)
-......|.|||.+. .-..||...|.-|
T Consensus 14 ~G~g~~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3iz6_N 14 YGAGSRVCRVCGNSHGLIRKYGLMCCRQC 42 (56)
T ss_dssp CCCCCCCCSSCCCSCCCTTTTSCTTHHHH
T ss_pred cCCCcceeecCCCCcccccccCCcHHHHH
Confidence 344456799999874 4468998888766
No 43
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.98 E-value=84 Score=19.80 Aligned_cols=22 Identities=27% Similarity=0.875 Sum_probs=15.5
Q ss_pred CCCcceEcCCCCcceeechhcchh--hH
Q psy11507 38 PRRLCLVCGDVASGFHYGVASCEA--CK 63 (113)
Q Consensus 38 ~~~~C~VC~~~~~g~hyGv~~C~~--C~ 63 (113)
...-| ||+++..+ -...|.. |.
T Consensus 35 e~~yC-iC~~~~~g---~MI~CD~~dC~ 58 (91)
T 1weu_A 35 EPTYC-LCHQVSYG---EMIGCDNPDCS 58 (91)
T ss_dssp CCBCS-TTCCBCCS---CCCCCSCSSCS
T ss_pred CCcEE-ECCCCCCC---CEeEecCCCCC
Confidence 34568 99988755 2667888 75
No 44
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=23.97 E-value=23 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.617 Sum_probs=24.7
Q ss_pred CCcceEcCCCCc---ceeechhcchhhHHHHHHh
Q psy11507 39 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 69 (113)
Q Consensus 39 ~~~C~VC~~~~~---g~hyGv~~C~~C~~FFRRs 69 (113)
...|.-|+.+.- ...||+..|..|.+..|..
T Consensus 34 N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l 67 (386)
T 3lju_X 34 NARCADCGAPDPDWASYTLGVFICLSCSGIHRNI 67 (386)
T ss_dssp GSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC
T ss_pred CCcCccCCCCCCCeEEecccEEEhhhhchHhhCC
Confidence 456999997643 3689999999999998654
No 45
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=22.60 E-value=33 Score=26.36 Aligned_cols=30 Identities=23% Similarity=0.615 Sum_probs=24.2
Q ss_pred CCcceEcCCCC---cceeechhcchhhHHHHHH
Q psy11507 39 RRLCLVCGDVA---SGFHYGVASCEACKAFFKR 68 (113)
Q Consensus 39 ~~~C~VC~~~~---~g~hyGv~~C~~C~~FFRR 68 (113)
...|.-|+.+. ....||++.|..|.+..|.
T Consensus 45 n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~ 77 (368)
T 3jue_A 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRS 77 (368)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred cCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhc
Confidence 56799999754 3369999999999999865
No 46
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=22.29 E-value=61 Score=22.77 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCcceEcCCCC-cc--eeechhcchhhHHHHHHhHhhcc-----ce--ecCCCC---CCCCCCCcchHHhHhHHhcCCc
Q psy11507 39 RRLCLVCGDVA-SG--FHYGVASCEACKAFFKRTIQARA-----SL--VSLRGH---EPQKKSSQIPKEKYNLAYLMSD 104 (113)
Q Consensus 39 ~~~C~VC~~~~-~g--~hyGv~~C~~C~~FFRRsv~~~~-----~~--~C~~~~---~c~~~~C~~CR~~kcl~~GM~~ 104 (113)
...|..||... .- ..|.|..|..|+.||........ .| .|..|+ .|...+|..|-=++||+.-+.+
T Consensus 36 e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 36 EDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp GGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCBCTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cCcccCCCCcCccccCCCccchhhHHHHHHHhhcccccCCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 45799998643 22 35899999999999977655431 11 133332 2233456666667788765555
No 47
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.09 E-value=72 Score=21.83 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCCcceEcCCCC-------ccee--echhcchhhHHHHHHh
Q psy11507 38 PRRLCLVCGDVA-------SGFH--YGVASCEACKAFFKRT 69 (113)
Q Consensus 38 ~~~~C~VC~~~~-------~g~h--yGv~~C~~C~~FFRRs 69 (113)
....|..|+... ...| +++..|..|+.||...
T Consensus 13 ~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~ 53 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 53 (142)
T ss_dssp CCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHS
T ss_pred CCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcC
Confidence 345799998654 2346 9999999999988544
No 48
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=21.07 E-value=35 Score=19.96 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=19.9
Q ss_pred CCCCCcceEcCCCC-cceeechhcchhhH
Q psy11507 36 ELPRRLCLVCGDVA-SGFHYGVASCEACK 63 (113)
Q Consensus 36 ~~~~~~C~VC~~~~-~g~hyGv~~C~~C~ 63 (113)
......|.|||.+. .-..||...|.-|-
T Consensus 15 G~gs~rC~vcGr~~g~iRkfGl~lcR~cf 43 (56)
T 3u5c_d 15 GKGSRQCRVCSSHTGLIRKYGLNICRQCF 43 (56)
T ss_dssp SGGGCCCTTTCCCSSEECGGGCCEEHHHH
T ss_pred CCCcceeecCCCCcccccccCcchhHHHH
Confidence 33456799999874 44589988887663
No 49
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=20.11 E-value=40 Score=19.56 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=20.3
Q ss_pred CCCCCcceEcCCC-Ccceeechhcchhh
Q psy11507 36 ELPRRLCLVCGDV-ASGFHYGVASCEAC 62 (113)
Q Consensus 36 ~~~~~~C~VC~~~-~~g~hyGv~~C~~C 62 (113)
......|.|||.+ +.-..||...|.-|
T Consensus 14 ~r~~nrC~~cGr~rg~iRkfgl~lcR~c 41 (55)
T 2xzm_N 14 GKDSKECRVCGARQGLITKYEMMTCRRC 41 (55)
T ss_dssp SGGGCCCTTTCCSSTTCCCSSSCCCHHH
T ss_pred CCCceEeecCCCCcchHHHhCCchhhHH
Confidence 4445679999986 45568998888877
Done!