RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11507
(113 letters)
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 61.1 bits (148), Expect = 2e-14
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 37 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
+ +C +CGD +SG HYGV SCE CK FFKRT++
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR 37
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 58.1 bits (140), Expect = 3e-13
Identities = 31/35 (88%), Positives = 35/35 (100%)
Query: 37 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
+P+RLCLVCGD+ASG+HYGVASCEACKAFFKRTIQ
Sbjct: 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQ 36
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 57.0 bits (137), Expect = 6e-13
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
P++ CL+CGD ASG HYG +C +CK FFKR +
Sbjct: 1 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAE 34
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 56.2 bits (135), Expect = 2e-12
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 40 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
R+C VCGD A+GFH+ +CE CK FF+R+++
Sbjct: 1 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMK 32
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 55.8 bits (134), Expect = 2e-12
Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 41 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
LC VCGDVASGFHYGV +CE CK FF+R+IQ
Sbjct: 2 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQ 32
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 55.5 bits (133), Expect = 3e-12
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 38 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
R C VC D ASG+HYGV SCE CKAFFKR+IQ
Sbjct: 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQ 36
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 54.7 bits (131), Expect = 5e-12
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 42 CLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
C VC D +SG+HYGV++CE CK FF+R+IQ
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQ 31
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 53.5 bits (128), Expect = 1e-11
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 40 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
R CLVC D ASG HYGV +CE CKAFFKR ++
Sbjct: 1 RPCLVCSDEASGCHYGVLTCEGCKAFFKRAVE 32
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 54.3 bits (130), Expect = 1e-11
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 42 CLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
C VCGD AS HYGV +CE CK FFKRT+Q
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQ 32
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 53.4 bits (128), Expect = 2e-11
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 41 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
LCLVCGD ASG+HY +CE CK FF+R++
Sbjct: 2 LCLVCGDRASGYHYNALTCEGCKGFFRRSVT 32
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 48.6 bits (115), Expect = 2e-09
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 41 LCLVCGDVASGFHYGVASCEACKAFFKRTIQ 71
LC+VCGD A+G+HY +CE CK FF+RTIQ
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQ 33
>d1iw4a_ g.68.1.1 (A:) Ascidian trypsin inhibitor {Sea squirt
(Halocynthia roretzi) [TaxId: 7729]}
Length = 55
Score = 23.8 bits (51), Expect = 2.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 33 KEEELPRRLCLVCGDVASGFHYGVASCE 60
KEE R +C +C + GF Y CE
Sbjct: 30 KEEH--RNMCALCCEHPGGFEYSNGPCE 55
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 115
Score = 24.8 bits (53), Expect = 2.2
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 28 STDGIKEEELPRRLCLVCGDVASGFHYGVASCEAC 62
ST+ + + LP+ L +V G
Sbjct: 11 STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGA 45
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.2 bits (49), Expect = 2.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 56 VASCEACKAFFKRTIQARASLVSLRG 81
V +C C+ F+R ++ R +VS G
Sbjct: 4 VFTCSVCQETFRRRMELRLHMVSHTG 29
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 165
Score = 23.6 bits (51), Expect = 5.9
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 83 EPQKKSSQIPKEKYNL-AYLMSDSLDTTN 110
+ K +P + L + +LD +
Sbjct: 5 DKLKTPEDVPNDPLPLISDFEWSTLDIDD 33
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 123
Score = 23.3 bits (49), Expect = 6.3
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 28 STDGIKEEELPRRLCLVCGDVAS 50
ST + E+P++L ++
Sbjct: 15 STGALALSEIPKKLVVIGAGYIG 37
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2,
SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 21.9 bits (47), Expect = 8.2
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 26 RGSTDGIKEEELPRRL 41
T I LP RL
Sbjct: 24 NKCTGAIWGLPLPTRL 39
>d1pzwa_ g.39.1.10 (A:) Transcription factor grauzone Cg33133-Pa,
zinc finger associated domain {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 80
Score = 22.8 bits (48), Expect = 8.8
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 33 KEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRT 69
+E+ + +C VC S FH S + + + T
Sbjct: 43 PNDEISKVICNVCWTQVSEFHQFYVSIQEAQVIYATT 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.388
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,397
Number of extensions: 15670
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 22
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)