BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11508
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 24 DKLMKKDPEESLNEAFDLFAGDK-DFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQD 82
+K++K+DP + + AF LF D I L+ +A +GE +TDEEL MI+EFDL+ D
Sbjct: 87 EKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGD 146
Query: 83 GK 84
G+
Sbjct: 147 GE 148
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 10 CSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDE 68
NRS LQS + + ++ ++ + EAF LF + D F+D+ LK +G ++
Sbjct: 2 SKNRSS--LQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKR 59
Query: 69 ELADMIKEFD 78
E+ D+I E+D
Sbjct: 60 EILDLIDEYD 69
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 27 MKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
M D EE L EAF +F D++ +I L+++ +GE +TDEE+ MIKE DL+ DG+
Sbjct: 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ 61
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 22 ITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLN 80
+T K+ +KD +E + +AF LF D+ I F LK +A +GE++TDEEL +MI E D +
Sbjct: 10 MTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRD 69
Query: 81 QDGKKSTTLHIQGTCKSS 98
DG+ S ++ K+S
Sbjct: 70 GDGEVSEQEFLRIMKKTS 87
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDK-DFIDFDTLKNIAGVIGEDVTDEELADM 73
+EFLQ +T K+ ++D E + +AF LF D+ I F LK +A +GE++TDEEL +M
Sbjct: 64 EEFLQM-MTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEM 122
Query: 74 IKEFDLNQDGK 84
I E D + DG+
Sbjct: 123 IDEADRDGDGE 133
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 22 ITDKLMKKDPEESLNEAFDLFAGDK-DFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLN 80
+T K+ +KD +E + +AF LF D+ I F LK +A +GE++TDEEL +MI E D +
Sbjct: 68 MTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRD 127
Query: 81 QDGKKS 86
DG+ S
Sbjct: 128 GDGEVS 133
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain
(T94-Y172) Of The Human Centrin 2 In Complex With A
Repeat Sequence Of Human Sfi1 (R641-T660)
Length = 79
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 23 TDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
T K+ +KD +E + +AF LF D+ I F LK +A +GE++TDEEL +MI E D +
Sbjct: 1 TQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDG 60
Query: 82 DGKKS 86
DG+ S
Sbjct: 61 DGEVS 65
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 24 DKLMKKDPEESLNEAFDLFAGDK-DFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQD 82
+K++K+DP + + AF LF D I L+ +A +GE +TDEEL I+EFDL+ D
Sbjct: 87 EKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAXIEEFDLDGD 146
Query: 83 GK 84
G+
Sbjct: 147 GE 148
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 10 CSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDE 68
NRS LQS + + ++ ++ + EAF LF + D F+D+ LK +G ++
Sbjct: 2 SKNRSS--LQSGPLNSELLEEQKQEIYEAFSLFDXNNDGFLDYHELKVAXKALGFELPKR 59
Query: 69 ELADMIKEFD 78
E+ D+I E+D
Sbjct: 60 EILDLIDEYD 69
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL S + K+ D EE L EAF +F D++ +I L+++ +GE +TDEE+ MI
Sbjct: 67 EFL-SLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 125
Query: 75 KEFDLNQDGK 84
KE DL+ DG+
Sbjct: 126 KEADLDGDGQ 135
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
EAF LF D D I + L + + ++ T+EEL DMI E D + +G
Sbjct: 14 EAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNG 61
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +MI+E D++
Sbjct: 367 KMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 424
Query: 82 DGK 84
DG+
Sbjct: 425 DGQ 427
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
EAF LF D D I L + +G++ T+ EL DMI E D + DG
Sbjct: 304 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDG 353
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
D EE L EAF +F D++ +I L+++ +GE +TDEE+ MIKE DL+ DG+
Sbjct: 1 DAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ 56
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 368 EFL-TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 426
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 427 READIDGDGQ 436
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 369 EFL-TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 427
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 428 READIDGDGQ 437
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 368 EFL-TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 426
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 427 READIDGDGQ 436
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 367 EFL-TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 425
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 426 READIDGDGQ 435
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 18 LQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
L+ + D+L ++ E EAF LF D D I L + +G++ T+ EL DMI E
Sbjct: 296 LEYNTRDQLTEEQIAE-FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 354
Query: 77 FDLNQDG 83
D + DG
Sbjct: 355 VDADGDG 361
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 368 EFL-TMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 426
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 427 READIDGDGQ 436
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 331 EFL-TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 389
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 390 READIDGDGQ 399
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 368 EFL-TMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 426
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 427 READIDGDGQ 436
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 18 LQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
L+ + D+L ++ E EAF LF D D I L + +G++ T+ EL DMI E
Sbjct: 297 LEYNTRDQLTEEQIAE-FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 355
Query: 77 FDLNQDG 83
D + DG
Sbjct: 356 VDADGDG 362
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 334 EFL-TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 392
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 393 READIDGDGQ 402
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 334 EFL-TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 392
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 393 READIDGDGQ 402
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 367 EFL-TMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 425
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 426 READIDGDGQ 435
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 18 LQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
L+ ++ D+L ++ E EAF LF D D I L + +G++ T+ EL DMI E
Sbjct: 296 LEYNLPDQLTEEQIAE-FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 354
Query: 77 FDLNQDG 83
D + DG
Sbjct: 355 VDADGDG 361
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + + K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI
Sbjct: 367 EFL-TMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 425
Query: 75 KEFDLNQDGK 84
+E D++ DG+
Sbjct: 426 READIDGDGQ 435
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 18 LQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
L+ ++ D+L ++ E EAF LF D D I L + +G++ T+ EL DMI E
Sbjct: 296 LEYNLPDQLTEEQIAE-FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 354
Query: 77 FDLNQDG 83
D + DG
Sbjct: 355 VDADGDG 361
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
K+ D EE L EAF +F D++ FI L+++ +GE +TDEE+ +MI+E D++ DG
Sbjct: 76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG 135
Query: 84 K 84
+
Sbjct: 136 Q 136
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
K+ D EE L EAF +F D++ FI L+++ +GE +TDEE+ +MI+E D++ DG
Sbjct: 76 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG 135
Query: 84 K 84
+
Sbjct: 136 Q 136
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
D EE L EAF +F D++ FI L+++ +GE +TDEE+ +MI+E D++ DG+
Sbjct: 1 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQ 56
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Query: 29 KDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
KD EE + EAF +F DKD FI L+++ +GE +TDEE+ +MI+E D++ DG+
Sbjct: 77 KDSEEEIREAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 133
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD FI L+++ +GE +TDEE+ +
Sbjct: 67 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 124 MIREADIDGDGQ 135
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD FI L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD FI L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD FI L+++ +GE +TDEE+ +
Sbjct: 67 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 124 MIREADIDGDGQ 135
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 23 TDKLMKKDPEESLNEAFDLFAGDK-DFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
T K +KD +E + +AF LF D+ I F LK +A +GE++TDEEL + I E D +
Sbjct: 94 TQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEXIDEADRDG 153
Query: 82 DGKKSTTLHIQGTCKSS 98
DG+ S ++ K+S
Sbjct: 154 DGEVSEQEFLRIXKKTS 170
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD FI L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIRESDIDGDGQ 136
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
K+ D EE L EAF +F DKD FI L+++ +GE +TDEE+ +MI+E D++
Sbjct: 72 KMKDTDSEEELKEAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 129
Query: 82 DGK 84
DG+
Sbjct: 130 DGQ 132
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 16 EFLQSSITDKLMKK-DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
EFL ++ + MK D EE + EAF +F D + +I L+++ +GE +TDEE+ +M
Sbjct: 368 EFL--TMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 425
Query: 74 IKEFDLNQDGK 84
I+E D++ DG+
Sbjct: 426 IREADIDGDGQ 436
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
K+ D EE L EAF +F DKD FI L+++ +GE +TDEE+ +MI+E D++
Sbjct: 75 KMKDTDSEEELKEAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 132
Query: 82 DGK 84
DG+
Sbjct: 133 DGQ 135
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
K+ D EE L EAF +F DKD FI L+++ +GE +TDEE+ +MI+E D++
Sbjct: 75 KMKDTDSEEKLKEAFRVF--DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 132
Query: 82 DGK 84
DG+
Sbjct: 133 DGQ 135
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
K+ D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI+E ++ DG
Sbjct: 376 KMKDTDSEEEIREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDEEVDEMIREAGIDGDG 435
Query: 84 K 84
+
Sbjct: 436 Q 436
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
++ + D EE + EAF +F D D FI L+ + +GE VTDEE+ +MI+E D + DG
Sbjct: 75 QMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDG 134
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 65 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 121
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 122 MIREADIDGDGQ 133
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 65 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 121
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 122 MIREADIDGDGQ 133
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 63 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 119
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 120 MIREADIDGDGQ 131
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 64 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 120
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 121 MIREADIDGDGQ 132
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 71 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 127
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 128 MIREADIDGDGQ 139
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 69 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 125
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 126 MIREADIDGDGQ 137
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of
Bordetella Pertussis In Presence Of C-Terminal
Calmodulin And 1mm Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of
Bordetella Pertussis In Presence Of C-Terminal
Calmodulin
Length = 74
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +MI+E D++
Sbjct: 1 KMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 58
Query: 82 DGK 84
DG+
Sbjct: 59 DGQ 61
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEXLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 67 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEXLTDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 124 MIREADIDGDGQ 135
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 65 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 121
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 122 MIREADIDGDGQ 133
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 67 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 124 MIREADIDGDGQ 135
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 73 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 129
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 130 MIREADIDGDGQ 141
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 67 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 124 MIREADIDGDGQ 135
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 66 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 122
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 123 MIREADIDGDGQ 134
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 67 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 124 MIREADIDGDGQ 135
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
EAF LF D D I L + +G++ T+ EL DMI E D + DG
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDG 61
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 27 MKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
M D EE + EAF +F DKD +I L+++ +GE +TDEE+ +MI+E D++ DG
Sbjct: 1 MDTDSEEEIREAFRVF--DKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDG 58
Query: 84 K 84
+
Sbjct: 59 Q 59
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+
Sbjct: 68 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDQ 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL S + K+ ++D EE L EAF +F D + I L+++ +GE +TD+E+ +MI
Sbjct: 67 EFL-SLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMI 125
Query: 75 KEFDLNQDG 83
+E D++ DG
Sbjct: 126 READIDGDG 134
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL S + K+ ++D EE L EAF +F D + I L+++ +GE +TD+E+ +MI
Sbjct: 67 EFL-SLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMI 125
Query: 75 KEFDLNQDG 83
+E D++ DG
Sbjct: 126 READIDGDG 134
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 30 DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
D EE + EAF +F DKD +I L+++ +GE +TDEE+ +MI+E D++ DG+
Sbjct: 2 DSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 57
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin
Carboxy-Terminal Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 30 DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
D EE + EAF +F DKD +I L+++ +GE +TDEE+ +MI+E D++ DG+
Sbjct: 5 DSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 60
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With
Pyrophosphate
Length = 67
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
D EE + EAF +F D + +I L+++ +GE +TDEE+ +MI+E D++ DG+
Sbjct: 2 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 57
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From
Calmodulin To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 30 DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
D EE + EAF +F DKD +I L+++ +GE +TDEE+ +MI+E D++ DG+
Sbjct: 3 DSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 58
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 67 EFL-TMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E +++ DG+
Sbjct: 124 MIREANIDGDGQ 135
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
+EFL + +T K+ ++D E + +AF LF D I L+ +A +GE++T+EEL +M
Sbjct: 84 EEFL-TMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEM 142
Query: 74 IKEFDLNQD 82
I E D N D
Sbjct: 143 IAEADRNDD 151
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal
Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal
Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In
Calcium-Calmodulin: Solution Structure Of Halothane-Cam
C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe
Bound With Er Alpha Peptide
Length = 67
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 32 EESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE + EAF +F DKD +I L+++ +GE +TDEE+ +MI+E D++ DG+
Sbjct: 1 EEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 54
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 25 KLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
+ MK+D EE L + F +F + D FID + L I GE VT+E++ D++K+ D
Sbjct: 84 RQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
Query: 80 NQDGK 84
N DG+
Sbjct: 144 NNDGR 148
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Query: 26 LMKK-DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
LMK D EE + EAF + DKD +I L+++ +GE +TDEE+ +MI+E D++
Sbjct: 21 LMKDTDSEEEIREAFRV--EDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 78
Query: 82 DGK 84
DG+
Sbjct: 79 DGQ 81
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin
Bound To The Iq Motif Of Nav1.2
Length = 73
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 26 LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
+ ++D EE L EAF +F D + I L+++ +GE +TD+E+ +MI+E D++ DG
Sbjct: 1 MKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDG 59
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 25 KLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
+ MK+D EE L + F +F + D FID + L I GE VT+E++ D++K+ D
Sbjct: 84 RQMKEDAKGKSEEELADCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
Query: 80 NQDGK 84
N DG+
Sbjct: 144 NNDGR 148
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + K+ D EE + EAF +F DKD F+ L+++ +GE ++DEE+ +
Sbjct: 67 EFL-GMMARKMKDTDNEEEIREAFRVF--DKDGNGFVSAAELRHVMTRLGEKLSDEEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+ D + DG+
Sbjct: 124 MIRAADTDGDGQ 135
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 25 KLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
+ MK+D EE L E F +F + D +ID + L I GE VTDEE+ ++K+ D
Sbjct: 81 RQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDK 140
Query: 80 NQDGK 84
N DG+
Sbjct: 141 NNDGR 145
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 25 KLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
+ MK+D EE L F +F + D FID + L I GE VT+E++ D++K+ D
Sbjct: 84 RQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 143
Query: 80 NQDGK 84
N DG+
Sbjct: 144 NNDGR 148
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
K D EE + EAF +F DKD +I L+++ +GE +TDEE+ + I+E D++
Sbjct: 75 KXKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREADIDG 132
Query: 82 DGK 84
DG+
Sbjct: 133 DGQ 135
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 30 DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
D EE + EAF +F DKD +I L+++ +GE +TDEE+ + I+E D++ DG+
Sbjct: 80 DSEEEIREAFRVF--DKDGNGYISAAELRHVXTNLGEKLTDEEVDEXIREADIDGDGQ 135
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 25 KLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
+ MK+D EE L F +F + D FID + L I GE VT+E++ D++K+ D
Sbjct: 81 RQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDK 140
Query: 80 NQDGK 84
N DG+
Sbjct: 141 NNDGR 145
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL ++ + MK E + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 63 EFL--TMMARKMKDTDSEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 118
Query: 73 MIKEFDLNQDGK 84
MI+E +++ DG+
Sbjct: 119 MIREANIDGDGQ 130
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 25 KLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
+ MK+D EE L E F +F + D +ID + L I GE VTDEE+ ++K+ D
Sbjct: 81 RQMKEDAKGKSEEELAELFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDK 140
Query: 80 NQDGK 84
N DG+
Sbjct: 141 NNDGR 145
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81
K D EE + EAF +F DKD +I L+++ +GE +TDEE+ I+E D++
Sbjct: 76 KXKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVXTNLGEKLTDEEVDQXIREADIDG 133
Query: 82 DGK 84
DG+
Sbjct: 134 DGQ 136
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + ++ +L D E+ L EAF +F + D I LK++ IGE +TD E+ DM+
Sbjct: 68 EFL-ALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDML 126
Query: 75 KE 76
+E
Sbjct: 127 RE 128
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 35.8 bits (81), Expect = 0.020, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
E L AF F D D I D L+ +G+ + EEL MI+E D++QDG+
Sbjct: 6 EDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGR 58
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 28 KKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
++D E + +AF LF D I L+ +A +GE++T+EEL +MI E D N D +
Sbjct: 4 ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNE 61
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 25 KLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
+ MK+D EE L F +F + D FID + L I GE V +E++ D++K+ D
Sbjct: 84 RQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDK 143
Query: 80 NQDGK 84
N DG+
Sbjct: 144 NNDGR 148
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID D LK + GE +T++++ +++K+ D N DG+
Sbjct: 94 EEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID D LK + GE +T++++ +++K+ D N DG+
Sbjct: 94 EEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 27 MKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
MK EE L++ F +F + D +ID + LK + GE +T++++ +++K+ D N DG+
Sbjct: 1 MKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR 59
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + ++ +L D E+ L EAF +F + D I LK++ IGE +TD E+ DM+
Sbjct: 67 EFL-ALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDML 125
Query: 75 KE 76
+E
Sbjct: 126 RE 127
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The
Cardiac Regulatory Protein Troponin C
Length = 72
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID D LK + GE +T++++ +++K+ D N DG+
Sbjct: 4 SEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR 58
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 28 KKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
K EE L F +F + D FID + L I GE V +E++ D++K+ D N DG+
Sbjct: 5 KGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGR 62
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 10 CSNRSKEFLQSSITDKLMKKDPE------ESLNEAFDLFAGD-KDFIDFDTLKNIAGVIG 62
SN K + SS K M PE + + EAFDLF D ID LK +G
Sbjct: 2 ASNFKKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALG 61
Query: 63 EDVTDEELADMIKEFDLNQDGK 84
+ EE+ MI E D GK
Sbjct: 62 FEPKKEEIKKMISEIDKEGTGK 83
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F ++ + D +ID D LK + GE +T++++ +++K+ D N DG+
Sbjct: 94 EEELSDLFRMWDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID + LK + GE +T++++ +++K+ D N DG+
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID + LK + GE +T++++ +++K+ D N DG+
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac
Troponin C Bound To The N Terminal Domain Of Cardiac
Troponin I
Length = 81
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID + LK + GE +T++++ +++K+ D N DG+
Sbjct: 14 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR 67
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID + LK + GE +T++++ +++K+ D N DG+
Sbjct: 94 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID + LK + GE +T++++ +++K+ D N DG+
Sbjct: 3 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR 57
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr,
30 Structures
Length = 76
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F +F + D +ID + LK + GE +T++++ +++K+ D N DG+
Sbjct: 9 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGR 62
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
EFL + ++ +L D E+ L EAF +F + D I LK++ IGE +TD E+ +M+
Sbjct: 68 EFL-ALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEML 126
Query: 75 KE 76
+E
Sbjct: 127 RE 128
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EE L++ F + + D +ID D LK + GE +T++++ +++K+ D N DG+
Sbjct: 94 EEELSDLFRMXDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGR 147
>pdb|1C7V|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
pdb|1C7W|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
Length = 81
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 27 MKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGED-VTDEELADMIKEFDLNQDG 83
+++D EE + AF +F + D IDFD K I +GE+ +TD E+ + +KE D + +G
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNG 60
>pdb|2K7B|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 N-Domain
Length = 76
Score = 30.4 bits (67), Expect = 0.83, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 24 DKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQD 82
D+ ++ + E L EAF F DKD +I+ L N +G T+ EL ++ ++ ++N
Sbjct: 1 DRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLG 60
Query: 83 G 83
G
Sbjct: 61 G 61
>pdb|1AYR|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 368
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 34 SLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQG 93
S +++ ++ G +D+ID ++ + V G + D EL K +++
Sbjct: 17 SRDKSVTIYLGKRDYIDH--VERVEPVDGVVLVDPELV-------------KGKRVYVSL 61
Query: 94 TCKSSKLSRLAINFFTWYPHFRASL----MEVSPPSTPSGEITRLDESLVSKQVGNVFSQ 149
TC + + + I+ FR L ++V PP SG TRL ESL+ K N +
Sbjct: 62 TC-AFRYGQEDIDVMGL--SFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPF 118
Query: 150 LV 151
L+
Sbjct: 119 LL 120
>pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 34 SLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQG 93
S +++ ++ G +D+ID ++ + V G + D EL K +++
Sbjct: 17 SRDKSVTIYLGKRDYIDH--VERVEPVDGVVLVDPELV-------------KGKRVYVSL 61
Query: 94 TCKSSKLSRLAINFFTWYPHFRASL----MEVSPPSTPSGEITRLDESLVSKQVGNVFSQ 149
TC + + + I+ FR L ++V PP SG TRL ESL+ K N +
Sbjct: 62 TC-AFRYGQEDIDVMGL--SFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPF 118
Query: 150 LV 151
L+
Sbjct: 119 LL 120
>pdb|3UGX|A Chain A, Crystal Structure Of Visual Arrestin
pdb|3UGX|B Chain B, Crystal Structure Of Visual Arrestin
pdb|3UGX|C Chain C, Crystal Structure Of Visual Arrestin
pdb|3UGX|D Chain D, Crystal Structure Of Visual Arrestin
Length = 414
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 34 SLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQG 93
S +++ ++ G +D+ID ++ + V G + D EL K +++
Sbjct: 27 SRDKSVTIYLGKRDYIDH--VERVEPVDGVVLVDPELV-------------KGKRVYVSL 71
Query: 94 TCKSSKLSRLAINFFTWYPHFRASL----MEVSPPSTPSGEITRLDESLVSKQVGNVFSQ 149
TC + + + I+ FR L ++V PP SG TRL ESL+ K N +
Sbjct: 72 TC-AFRYGQEDIDVMGL--SFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPF 128
Query: 150 LV 151
L+
Sbjct: 129 LL 130
>pdb|3UGU|A Chain A, Crystal Structure Of P44 (Splice Variant Of Visual
Arrestin)
Length = 380
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 34 SLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQG 93
S +++ ++ G +D+ID ++ + V G + D EL K +++
Sbjct: 27 SRDKSVTIYLGKRDYIDH--VERVEPVDGVVLVDPELV-------------KGKRVYVSL 71
Query: 94 TCKSSKLSRLAINFFTWYPHFRASL----MEVSPPSTPSGEITRLDESLVSKQVGNVFSQ 149
TC + + + I+ FR L ++V PP SG TRL ESL+ K N +
Sbjct: 72 TC-AFRYGQEDIDVMGL--SFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPF 128
Query: 150 LV 151
L+
Sbjct: 129 LL 130
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
N60d Calmodulin Refined With Paramagnetism Based
Strategy
Length = 79
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
EAF LF D D I L + +G++ T+ EL DMI E D + DG
Sbjct: 14 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDG 61
>pdb|2H56|A Chain A, Crystal Structure Of Dna-3-methyladenine Glycosidase
(10174367) From Bacillus Halodurans At 2.55 A Resolution
pdb|2H56|B Chain B, Crystal Structure Of Dna-3-methyladenine Glycosidase
(10174367) From Bacillus Halodurans At 2.55 A Resolution
pdb|2H56|C Chain C, Crystal Structure Of Dna-3-methyladenine Glycosidase
(10174367) From Bacillus Halodurans At 2.55 A Resolution
Length = 233
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 161 RVVEYRRLFMQCFENLRMAMTLVQGGEASEKVQENLTCIPGISYYSDFSF 210
R +EY R + E+ R+ T ++G EA+ V E LT I GI ++ F
Sbjct: 106 RKIEYIRHVCEHVESGRLDFTELEGAEAT-TVIEKLTAIKGIGQWTAEXF 154
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEEL 70
EFL + ++ +L D E+ L EAF +F + D I LK++ IGE +TD EL
Sbjct: 67 EFL-ALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEL 121
>pdb|3H4S|E Chain E, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 135
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 28 KKDPEESLNE---AFDLFAG-DKDFIDFDTLKNIAGVIG-EDVTDEELADMIKEFDLNQD 82
K D EE ++E F L A ++ I ++L+ +G++G E ++ E+ M++E DL+ D
Sbjct: 32 KMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGD 91
Query: 83 GKKSTT 88
G + T
Sbjct: 92 GALNQT 97
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of
This Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of
This Allosteric Motor
Length = 157
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 20 SSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
S + KL +K +E + EAF + ++D FID + LK + +G D+EL M+KE
Sbjct: 7 SGVLTKLPQKQIQE-MKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKE 63
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
PE+ N F +F D + FI F+ + +E+L+ + +DLN DG
Sbjct: 61 PEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDG 114
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 27 MKKDPEESLNEAFDLFAGDK-DFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
+ ++ ++ + EAFDLF +K ID+ LK +G DV E+ +++ E+D +G
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNG 58
>pdb|2R6A|A Chain A, Crystal Form Bh1
pdb|2R6A|B Chain B, Crystal Form Bh1
pdb|2R6E|A Chain A, Crystal Form B2
pdb|2R6E|B Chain B, Crystal Form B2
pdb|2R6C|A Chain A, Crystal Form Bh2
pdb|2R6C|B Chain B, Crystal Form Bh2
pdb|2R6C|C Chain C, Crystal Form Bh2
pdb|2R6C|D Chain D, Crystal Form Bh2
pdb|2R6C|E Chain E, Crystal Form Bh2
pdb|2R6C|F Chain F, Crystal Form Bh2
pdb|2R6D|A Chain A, Crystal Form B1
pdb|2R6D|B Chain B, Crystal Form B1
pdb|2R6D|C Chain C, Crystal Form B1
pdb|2R6D|D Chain D, Crystal Form B1
pdb|2R6D|E Chain E, Crystal Form B1
pdb|2R6D|F Chain F, Crystal Form B1
pdb|4ESV|A Chain A, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|B Chain B, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|C Chain C, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|D Chain D, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|E Chain E, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|F Chain F, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|G Chain G, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|H Chain H, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|I Chain I, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|J Chain J, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|K Chain K, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|L Chain L, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
Length = 454
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 188 ASEKVQENLTCIPGISYYSDFSFAIGTSRAIGYYKR 223
ASE+++E I G+SY S+ + A+ T+ + YY R
Sbjct: 76 ASEQLEE----IGGVSYLSELADAVPTAANVEYYAR 107
>pdb|2LC5|A Chain A, Calmodulin-Like Protein From Entamoeba Histolytica:
Solution Structure And Calcium-Binding Properties Of A
Partially Folded Protein
Length = 85
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKDF-IDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
K++ + ++ EAF LF D D + + L + +G + T +++++++K++D + G
Sbjct: 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSG 65
Query: 84 K 84
K
Sbjct: 66 K 66
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
+ + EAF + ++D FID + LK + +G D+EL M+KE
Sbjct: 23 QEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKE 67
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
Length = 161
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
+ + EAF + ++D FID + LK + +G D+EL M+KE
Sbjct: 23 QEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLKE 67
>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1YPR|B Chain B, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1K0K|A Chain A, Yeast Profilin, Cubic Crystal Form
Length = 125
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 62 GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRAS---- 117
G + E+ ++++ FD N G +S LHIQG K L + + Y A
Sbjct: 34 GLSLQPNEIGEIVQGFD-NPAGLQSNGLHIQG----QKFMLLRADDRSIYGRHDAEGVVC 88
Query: 118 -------LMEVSPPSTPSGEITRLDESLVSKQVG 144
++ PP+ +GE T++ E L +G
Sbjct: 89 VRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIG 122
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In
The Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
+ L EAF + D+D FI + LK++ +G D+EL M+KE
Sbjct: 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE 60
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ +++ L K + EE+L AF F DKD +I D ++ G D D + D
Sbjct: 67 EFIAATV--HLNKLEREENLVSAFSYF--DKDGSGYITLDEIQQACKDFGLD--DIHIDD 120
Query: 73 MIKEFDLNQDGK 84
MIKE D + DG+
Sbjct: 121 MIKEIDQDNDGQ 132
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
Length = 339
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
EAF LF D D I + L + + ++ T+EEL DMI E D + +G
Sbjct: 14 EAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNG 61
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 240 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 290
>pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Parallel Beta-Helix:
Rational Mutations In P22 Tailspike Protein
Length = 559
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 49 IDFDTLKNIAGV----IGEDVTDEELADMIKEFD-LNQDGKKSTTLHIQGTC 95
ID D K V + +D T+++L+D++ E + + GK +H+ G C
Sbjct: 59 IDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIIHLLGAC 110
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1QQ1|A Chain A, Tailspike Protein, Mutant E359g
Length = 559
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|2VFQ|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V450a
Length = 559
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|2VFN|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125a
Length = 559
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|1TSP|A Chain A, Crystal Structure Of P22 Tailspike Protein: Interdigitated
Subunits In A Thermostable Trimer
pdb|3TH0|A Chain A, P22 Tailspike Complexed With S.Paratyphi O Antigen
Octasaccharide
Length = 559
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|1QRC|A Chain A, Tailspike Protein, Mutant W391a
Length = 559
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|1QX2|A Chain A, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A
Conformational Opening) At 1.44 A Resolution
pdb|1QX2|B Chain B, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A
Conformational Opening) At 1.44 A Resolution
Length = 76
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 29 KDPEESLNEAFDLFA---GDKDFIDFDTLKNIAGVIGEDVTD--EELADMIKEFDLNQDG 83
K PEE + AF++FA GD + I + LK + +G + L +MI+E D N DG
Sbjct: 2 KSPEE-IKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDG 60
Query: 84 KKS 86
+ S
Sbjct: 61 EVS 63
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
EAF LF D D I + L + + ++ T+EEL DMI E D + +G
Sbjct: 14 EAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNG 61
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 21 SITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDL 79
S D+ ++ + E L EAF F DKD +I+ L N +G T+ EL ++ ++ ++
Sbjct: 13 SRKDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINM 72
Query: 80 NQDG 83
N G
Sbjct: 73 NLGG 76
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFA----GDKDFIDF 51
ALHL + L+S D M + EE E +DLF +KD+ D+
Sbjct: 239 ALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADY 289
>pdb|2VFP|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V349l
Length = 559
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|2VFO|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666), Mutant V125l
Length = 559
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|2VFM|A Chain A, Low Temperature Structure Of P22 Tailspike Protein
Fragment (109-666)
Length = 559
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 347 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 403
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 404 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 459
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 460 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 491
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal
Sensor Domain Of Centrin
Length = 96
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 30 DPEESLNEAFDLFAGD-KDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
+ ++ + EAFDLF D ID LK +G + EE+ MI E D + G
Sbjct: 27 EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSG 81
>pdb|2XC1|A Chain A, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|B Chain B, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
pdb|2XC1|C Chain C, Full-Length Tailspike Protein Mutant Y108w Of
Bacteriophage P22
Length = 666
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 53 TLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYP 112
T+++ AG +T E + I D N ++ ++I G C+ + L + I
Sbjct: 454 TVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTD--- 510
Query: 113 HFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQC 172
SL +P ST SG +D S ++ V N+ + + I +S G +L +
Sbjct: 511 --GQSLTIDAPNSTVSGITGMVDPSRIN--VANLAEEGLGNIRANSFGYDSAAIKLRIHK 566
Query: 173 FENLRMAMTL---VQGGEASEKVQENLTCIPG 201
+ L + GG S LT I G
Sbjct: 567 LSKTLDSGALYSHINGGAGSGSAYTQLTAISG 598
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,373,114
Number of Sequences: 62578
Number of extensions: 234663
Number of successful extensions: 998
Number of sequences better than 100.0: 195
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 234
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)