Query psy11508
Match_columns 237
No_of_seqs 274 out of 1840
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:12:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0027|consensus 99.8 7.8E-19 1.7E-23 142.1 12.1 133 30-173 5-147 (151)
2 COG5126 FRQ1 Ca2+-binding prot 99.7 1.4E-17 3E-22 135.7 11.7 127 30-167 17-149 (160)
3 KOG0028|consensus 99.7 4.4E-16 9.5E-21 125.4 11.7 125 30-163 30-160 (172)
4 COG5126 FRQ1 Ca2+-binding prot 99.6 8.1E-15 1.8E-19 119.5 10.7 88 8-96 68-156 (160)
5 KOG0027|consensus 99.6 8.2E-15 1.8E-19 118.5 10.0 92 4-96 53-149 (151)
6 PTZ00183 centrin; Provisional 99.5 2.1E-13 4.5E-18 109.3 12.3 133 30-173 14-152 (158)
7 PTZ00184 calmodulin; Provision 99.5 8.5E-13 1.8E-17 104.3 13.6 128 30-167 8-141 (149)
8 KOG0030|consensus 99.5 2.8E-13 6E-18 106.9 10.2 136 28-171 6-148 (152)
9 KOG0028|consensus 99.4 5.5E-13 1.2E-17 107.5 9.6 91 5-96 79-170 (172)
10 KOG0031|consensus 99.4 8.4E-12 1.8E-16 100.2 11.7 125 30-168 29-159 (171)
11 PTZ00183 centrin; Provisional 99.3 1.4E-11 2.9E-16 98.7 10.8 92 5-97 63-155 (158)
12 PTZ00184 calmodulin; Provision 99.3 2.2E-11 4.7E-16 96.2 10.5 90 5-95 57-147 (149)
13 cd05022 S-100A13 S-100A13: S-1 99.2 2.5E-11 5.5E-16 90.1 7.1 65 32-96 7-75 (89)
14 KOG0037|consensus 99.2 1.1E-10 2.4E-15 98.6 10.5 85 3-95 102-187 (221)
15 KOG0031|consensus 99.2 1.3E-10 2.7E-15 93.4 10.1 89 7-96 76-165 (171)
16 KOG0034|consensus 99.2 1.4E-10 3E-15 97.2 10.3 92 6-98 77-177 (187)
17 PF13499 EF-hand_7: EF-hand do 99.2 1.3E-10 2.7E-15 80.6 7.3 61 34-94 1-66 (66)
18 KOG0037|consensus 99.1 9.3E-10 2E-14 93.1 13.0 132 32-181 56-194 (221)
19 cd05027 S-100B S-100B: S-100B 99.1 2.4E-10 5.2E-15 84.7 8.2 65 32-96 7-79 (88)
20 cd05025 S-100A1 S-100A1: S-100 99.0 1.4E-09 2.9E-14 80.9 8.0 65 32-96 8-80 (92)
21 cd05031 S-100A10_like S-100A10 99.0 1.6E-09 3.6E-14 80.8 7.6 65 32-96 7-79 (94)
22 cd05026 S-100Z S-100Z: S-100Z 99.0 2.4E-09 5.2E-14 80.0 8.0 65 32-96 9-81 (93)
23 KOG0038|consensus 99.0 1.7E-09 3.6E-14 86.5 7.4 92 6-98 82-179 (189)
24 cd05029 S-100A6 S-100A6: S-100 99.0 3E-09 6.4E-14 78.8 7.8 65 32-96 9-79 (88)
25 KOG0034|consensus 98.9 1.3E-08 2.9E-13 85.3 11.6 125 30-167 30-171 (187)
26 KOG0044|consensus 98.9 5.7E-09 1.2E-13 87.8 8.5 90 5-96 74-175 (193)
27 KOG0030|consensus 98.9 4.4E-09 9.6E-14 83.3 7.2 84 10-95 64-150 (152)
28 cd00052 EH Eps15 homology doma 98.9 5.8E-09 1.3E-13 71.9 6.7 59 36-96 2-61 (67)
29 cd00213 S-100 S-100: S-100 dom 98.9 7E-09 1.5E-13 76.1 7.1 66 31-96 6-79 (88)
30 smart00027 EH Eps15 homology d 98.9 8.5E-09 1.9E-13 77.1 7.7 65 30-96 7-72 (96)
31 KOG0044|consensus 98.9 1.6E-08 3.5E-13 85.1 9.8 88 8-96 40-128 (193)
32 PLN02964 phosphatidylserine de 98.8 2E-08 4.3E-13 98.0 9.4 98 31-142 141-243 (644)
33 KOG0036|consensus 98.8 6.7E-08 1.4E-12 88.6 11.5 123 32-169 13-144 (463)
34 cd00051 EFh EF-hand, calcium b 98.8 4.6E-08 1E-12 64.7 7.5 60 35-94 2-62 (63)
35 cd05023 S-100A11 S-100A11: S-1 98.7 4.6E-08 9.9E-13 72.6 7.7 65 32-96 8-80 (89)
36 PF13833 EF-hand_8: EF-hand do 98.7 3.4E-08 7.4E-13 65.8 6.3 48 48-95 4-52 (54)
37 PF14658 EF-hand_9: EF-hand do 98.7 5.7E-08 1.2E-12 67.9 6.4 60 37-96 2-64 (66)
38 KOG0036|consensus 98.6 1.5E-07 3.3E-12 86.2 9.1 88 4-98 60-148 (463)
39 KOG4223|consensus 98.6 3.6E-07 7.8E-12 81.5 10.2 154 26-193 70-240 (325)
40 cd05030 calgranulins Calgranul 98.6 2.3E-07 4.9E-12 68.6 6.8 65 32-96 7-79 (88)
41 cd00252 SPARC_EC SPARC_EC; ext 98.5 4.2E-07 9.1E-12 70.7 7.5 61 31-95 46-107 (116)
42 KOG0041|consensus 98.4 4.3E-07 9.4E-12 76.2 6.3 67 30-96 96-163 (244)
43 KOG4223|consensus 98.4 2.4E-06 5.1E-11 76.4 9.4 149 5-162 123-294 (325)
44 PLN02964 phosphatidylserine de 98.2 8.5E-06 1.8E-10 79.8 10.0 62 35-96 181-243 (644)
45 cd05024 S-100A10 S-100A10: A s 98.2 1.4E-05 3.1E-10 59.4 8.2 65 32-96 7-76 (91)
46 cd05022 S-100A13 S-100A13: S-1 98.1 1.8E-05 4E-10 58.7 7.7 62 124-187 18-87 (89)
47 KOG2643|consensus 98.1 3.5E-05 7.5E-10 71.5 10.9 178 3-199 207-433 (489)
48 PF13499 EF-hand_7: EF-hand do 98.1 2.1E-05 4.5E-10 54.1 7.2 60 70-167 2-61 (66)
49 PF00036 EF-hand_1: EF hand; 97.8 2.4E-05 5.3E-10 45.9 3.7 27 69-95 1-27 (29)
50 PF00036 EF-hand_1: EF hand; 97.8 2.4E-05 5.1E-10 45.9 3.2 28 34-61 1-29 (29)
51 PF13405 EF-hand_6: EF-hand do 97.8 2.4E-05 5.3E-10 46.3 3.3 29 34-62 1-31 (31)
52 KOG0377|consensus 97.7 0.00015 3.2E-09 67.6 8.0 90 5-95 509-614 (631)
53 KOG0040|consensus 97.7 0.00025 5.5E-09 73.7 10.2 117 31-157 2251-2378(2399)
54 PF13833 EF-hand_8: EF-hand do 97.6 0.00015 3.2E-09 48.0 5.6 50 9-60 2-53 (54)
55 PF14788 EF-hand_10: EF hand; 97.6 0.00021 4.5E-09 47.4 5.6 48 48-95 1-48 (51)
56 PRK12309 transaldolase/EF-hand 97.5 0.00037 8.1E-09 64.8 8.3 56 28-96 329-385 (391)
57 cd05026 S-100Z S-100Z: S-100Z 97.5 0.00046 9.9E-09 51.3 7.0 51 124-176 21-82 (93)
58 KOG0038|consensus 97.5 0.00019 4.1E-09 57.8 5.0 87 71-167 74-170 (189)
59 PF12763 EF-hand_4: Cytoskelet 97.5 0.00058 1.3E-08 52.1 7.4 64 29-95 6-70 (104)
60 KOG0377|consensus 97.4 0.0014 3.1E-08 61.2 10.3 133 32-169 463-613 (631)
61 cd05027 S-100B S-100B: S-100B 97.3 0.00095 2.1E-08 49.2 6.7 47 125-173 20-77 (88)
62 KOG0751|consensus 97.3 0.0013 2.9E-08 62.1 9.0 118 5-143 84-208 (694)
63 KOG2643|consensus 97.2 0.0014 3E-08 61.1 8.4 140 6-167 297-446 (489)
64 cd05023 S-100A11 S-100A11: S-1 97.2 0.0013 2.7E-08 48.7 6.7 64 106-176 7-81 (89)
65 KOG4666|consensus 97.2 0.0008 1.7E-08 60.6 6.2 92 5-99 269-362 (412)
66 PF13202 EF-hand_5: EF hand; P 97.0 0.0013 2.9E-08 37.0 3.6 23 71-93 2-24 (25)
67 PF10591 SPARC_Ca_bdg: Secrete 96.8 0.00068 1.5E-08 52.4 1.8 60 31-92 52-112 (113)
68 cd00051 EFh EF-hand, calcium b 96.8 0.0053 1.2E-07 39.8 5.9 52 5-58 10-62 (63)
69 cd05025 S-100A1 S-100A1: S-100 96.8 0.0055 1.2E-07 45.1 6.6 48 125-174 21-79 (92)
70 PF13202 EF-hand_5: EF hand; P 96.7 0.0018 3.8E-08 36.5 2.7 24 35-58 1-25 (25)
71 KOG4251|consensus 96.5 0.006 1.3E-07 53.2 5.9 60 33-92 101-164 (362)
72 PF13405 EF-hand_6: EF-hand do 96.4 0.0054 1.2E-07 36.0 3.7 27 69-95 1-27 (31)
73 KOG0046|consensus 96.4 0.0083 1.8E-07 57.2 6.6 66 30-96 16-85 (627)
74 cd05031 S-100A10_like S-100A10 96.4 0.0061 1.3E-07 45.1 4.5 57 6-63 20-82 (94)
75 smart00027 EH Eps15 homology d 96.4 0.015 3.2E-07 43.1 6.6 59 5-67 20-84 (96)
76 cd00052 EH Eps15 homology doma 96.3 0.019 4E-07 38.9 6.5 53 5-61 9-62 (67)
77 cd05029 S-100A6 S-100A6: S-100 96.3 0.017 3.8E-07 42.5 6.7 54 7-61 23-80 (88)
78 cd00213 S-100 S-100: S-100 dom 96.3 0.014 3.1E-07 42.3 6.0 54 7-61 22-80 (88)
79 PRK12309 transaldolase/EF-hand 96.0 0.036 7.8E-07 51.8 8.5 37 124-169 344-380 (391)
80 KOG4065|consensus 95.9 0.037 8E-07 43.0 7.0 58 36-93 70-142 (144)
81 cd05030 calgranulins Calgranul 95.8 0.023 5E-07 41.6 5.4 53 8-61 23-80 (88)
82 cd00252 SPARC_EC SPARC_EC; ext 95.8 0.027 5.9E-07 43.7 6.0 49 5-59 58-107 (116)
83 PF09279 EF-hand_like: Phospho 95.3 0.053 1.2E-06 38.9 5.7 63 34-97 1-70 (83)
84 smart00054 EFh EF-hand, calciu 95.3 0.025 5.5E-07 30.6 3.1 26 70-95 2-27 (29)
85 KOG0041|consensus 95.2 0.048 1E-06 46.3 5.7 45 124-169 109-158 (244)
86 KOG2562|consensus 95.2 0.061 1.3E-06 50.7 6.9 121 5-138 235-375 (493)
87 smart00054 EFh EF-hand, calciu 95.2 0.025 5.5E-07 30.6 2.8 26 35-60 2-28 (29)
88 KOG0751|consensus 95.0 0.52 1.1E-05 45.1 12.4 23 147-169 181-205 (694)
89 KOG2562|consensus 94.6 0.1 2.3E-06 49.2 6.9 85 6-92 326-420 (493)
90 KOG4251|consensus 93.4 0.59 1.3E-05 41.1 8.6 93 69-162 237-334 (362)
91 cd05024 S-100A10 S-100A10: A s 93.2 0.44 9.5E-06 35.5 6.6 54 8-62 20-78 (91)
92 PF05517 p25-alpha: p25-alpha 91.9 0.79 1.7E-05 37.2 7.2 61 36-96 2-69 (154)
93 PLN02952 phosphoinositide phos 90.1 2.9 6.3E-05 41.2 10.4 87 8-96 13-110 (599)
94 PF14788 EF-hand_10: EF hand; 89.7 1.1 2.4E-05 29.7 5.0 49 11-61 1-50 (51)
95 KOG0035|consensus 89.3 1.4 3.1E-05 45.0 7.7 70 31-100 745-820 (890)
96 KOG0042|consensus 89.0 0.68 1.5E-05 45.0 5.0 64 33-96 593-657 (680)
97 PF08726 EFhand_Ca_insen: Ca2+ 88.0 0.37 7.9E-06 34.0 1.9 56 30-93 3-66 (69)
98 PF14658 EF-hand_9: EF-hand do 87.9 2.5 5.4E-05 29.6 6.0 57 3-60 6-64 (66)
99 KOG3555|consensus 87.5 1.4 3.1E-05 40.4 5.8 63 32-98 249-312 (434)
100 KOG1029|consensus 87.2 0.87 1.9E-05 45.7 4.6 64 30-95 192-256 (1118)
101 KOG0046|consensus 85.4 2.9 6.3E-05 40.4 7.0 75 64-179 12-89 (627)
102 KOG0040|consensus 85.3 3.5 7.6E-05 44.5 8.0 84 2-94 2303-2396(2399)
103 KOG2243|consensus 85.3 1.3 2.8E-05 47.3 4.8 59 37-96 4061-4120(5019)
104 KOG4578|consensus 83.8 0.55 1.2E-05 42.7 1.4 67 30-96 330-398 (421)
105 KOG4666|consensus 82.5 2.8 6.1E-05 38.3 5.3 107 48-167 243-355 (412)
106 PF12763 EF-hand_4: Cytoskelet 80.7 4.8 0.00011 30.5 5.4 50 7-60 21-71 (104)
107 KOG3866|consensus 80.3 2.5 5.4E-05 38.4 4.2 112 50-193 225-338 (442)
108 KOG0169|consensus 80.0 5 0.00011 40.3 6.6 69 30-98 133-202 (746)
109 PF09069 EF-hand_3: EF-hand; 76.5 22 0.00047 26.4 7.6 63 32-97 2-76 (90)
110 PF01623 Carla_C4: Carlavirus 68.8 2 4.4E-05 31.8 0.6 18 189-206 68-85 (91)
111 KOG2871|consensus 68.4 4.3 9.3E-05 37.7 2.6 65 30-94 306-372 (449)
112 KOG4347|consensus 67.9 7.5 0.00016 38.5 4.3 77 12-90 535-612 (671)
113 KOG4065|consensus 67.9 20 0.00044 28.0 5.8 78 64-169 62-140 (144)
114 KOG3866|consensus 67.8 7.3 0.00016 35.4 3.9 61 37-97 248-325 (442)
115 PF00404 Dockerin_1: Dockerin 67.5 5 0.00011 21.6 1.8 12 155-166 1-12 (21)
116 KOG1707|consensus 66.9 38 0.00083 33.4 8.9 133 33-171 195-343 (625)
117 PF03672 UPF0154: Uncharacteri 65.0 20 0.00044 24.8 4.9 31 47-77 29-60 (64)
118 PF10591 SPARC_Ca_bdg: Secrete 63.4 3.2 6.9E-05 31.9 0.7 48 5-56 64-112 (113)
119 COG4103 Uncharacterized protei 63.3 47 0.001 26.8 7.3 62 36-98 33-96 (148)
120 PRK00523 hypothetical protein; 62.3 25 0.00054 25.0 5.0 32 46-77 36-68 (72)
121 PF01023 S_100: S-100/ICaBP ty 61.9 15 0.00034 23.3 3.6 29 32-60 5-36 (44)
122 KOG1955|consensus 61.4 15 0.00033 35.5 4.9 63 31-95 229-292 (737)
123 KOG1265|consensus 60.5 53 0.0011 34.2 8.7 80 12-96 205-299 (1189)
124 KOG3449|consensus 60.3 28 0.0006 26.8 5.3 53 35-92 3-56 (112)
125 PF07308 DUF1456: Protein of u 59.3 28 0.0006 24.3 4.9 32 49-80 14-45 (68)
126 COG3763 Uncharacterized protei 58.5 34 0.00074 24.1 5.1 33 46-78 35-68 (71)
127 PRK01844 hypothetical protein; 56.0 34 0.00074 24.3 4.8 32 46-77 35-67 (72)
128 PTZ00373 60S Acidic ribosomal 53.3 52 0.0011 25.4 5.9 53 35-92 5-58 (112)
129 PF05042 Caleosin: Caleosin re 53.1 53 0.0012 27.3 6.3 32 34-65 8-40 (174)
130 PF08976 DUF1880: Domain of un 50.9 16 0.00034 28.4 2.7 31 65-95 4-34 (118)
131 KOG0039|consensus 49.3 40 0.00086 33.7 5.9 81 9-98 2-91 (646)
132 cd05833 Ribosomal_P2 Ribosomal 48.1 70 0.0015 24.5 5.9 55 35-94 3-58 (109)
133 KOG1707|consensus 45.1 29 0.00062 34.3 4.0 57 33-95 315-376 (625)
134 TIGR01848 PHA_reg_PhaR polyhyd 44.7 52 0.0011 25.1 4.6 49 40-88 10-69 (107)
135 KOG4578|consensus 44.7 21 0.00045 32.8 2.9 53 5-60 343-398 (421)
136 PF07879 PHB_acc_N: PHB/PHA ac 44.0 38 0.00081 23.5 3.4 38 40-77 10-58 (64)
137 PLN02230 phosphoinositide phos 43.3 1.1E+02 0.0024 30.4 7.9 67 29-96 25-102 (598)
138 PLN02222 phosphoinositide phos 42.3 97 0.0021 30.7 7.3 64 31-96 23-90 (581)
139 PF05042 Caleosin: Caleosin re 40.2 1.3E+02 0.0029 25.0 6.8 62 32-94 95-164 (174)
140 PLN02228 Phosphoinositide phos 40.1 1.3E+02 0.0029 29.7 7.8 66 29-96 20-92 (567)
141 KOG3555|consensus 40.1 53 0.0011 30.5 4.7 63 33-95 211-277 (434)
142 KOG0169|consensus 39.0 1.2E+02 0.0026 30.8 7.4 85 5-95 146-231 (746)
143 PLN00138 large subunit ribosom 38.0 1.2E+02 0.0026 23.3 5.8 50 38-92 6-56 (113)
144 PF07499 RuvA_C: RuvA, C-termi 37.7 87 0.0019 19.8 4.3 39 51-93 3-41 (47)
145 PF09279 EF-hand_like: Phospho 36.9 45 0.00098 23.4 3.2 53 8-61 12-70 (83)
146 cd06402 PB1_p62 The PB1 domain 34.0 45 0.00099 24.5 2.8 51 6-62 21-76 (87)
147 PF11116 DUF2624: Protein of u 33.6 1.9E+02 0.0042 21.2 6.8 47 48-94 14-60 (85)
148 cd07313 terB_like_2 tellurium 30.9 1.6E+02 0.0036 21.2 5.5 49 48-96 15-65 (104)
149 cd00086 homeodomain Homeodomai 30.2 1.5E+02 0.0032 18.8 5.3 39 31-76 11-50 (59)
150 PF08461 HTH_12: Ribonuclease 29.5 78 0.0017 21.7 3.3 34 48-81 13-46 (66)
151 PLN02223 phosphoinositide phos 29.0 2.2E+02 0.0049 27.9 7.3 67 29-96 12-92 (537)
152 KOG4070|consensus 28.4 99 0.0021 25.3 4.1 66 31-96 10-85 (180)
153 PF10437 Lip_prot_lig_C: Bacte 28.1 85 0.0018 22.3 3.4 42 51-94 44-86 (86)
154 COG2058 RPP1A Ribosomal protei 27.0 2.9E+02 0.0063 21.2 6.2 51 39-94 7-57 (109)
155 TIGR01639 P_fal_TIGR01639 Plas 25.6 1.3E+02 0.0029 20.3 3.8 30 48-77 9-38 (61)
156 cd08315 Death_TRAILR_DR4_DR5 D 24.9 2.9E+02 0.0062 20.4 6.8 41 31-76 2-42 (96)
157 KOG0998|consensus 24.6 29 0.00063 35.8 0.5 65 30-96 280-345 (847)
158 KOG1029|consensus 24.6 2.5E+02 0.0055 29.0 6.9 61 33-95 13-76 (1118)
159 COG2818 Tag 3-methyladenine DN 22.8 67 0.0014 27.1 2.2 44 32-75 54-98 (188)
160 TIGR00135 gatC glutamyl-tRNA(G 22.3 1.5E+02 0.0034 21.4 3.9 30 49-78 1-30 (93)
161 PRK00034 gatC aspartyl/glutamy 22.1 1.6E+02 0.0035 21.3 4.0 31 48-78 2-32 (95)
162 PF06648 DUF1160: Protein of u 21.8 2.9E+02 0.0063 21.6 5.5 46 31-78 35-81 (122)
163 cd04411 Ribosomal_P1_P2_L12p R 21.3 2E+02 0.0043 21.8 4.4 43 48-95 16-58 (105)
164 PF01316 Arg_repressor: Argini 21.2 1.9E+02 0.004 20.2 3.9 31 48-78 19-49 (70)
165 PRK14981 DNA-directed RNA poly 20.8 1.7E+02 0.0037 22.3 4.0 25 51-75 81-105 (112)
166 cd05831 Ribosomal_P1 Ribosomal 20.8 2.4E+02 0.0051 21.3 4.7 44 45-93 13-57 (103)
No 1
>KOG0027|consensus
Probab=99.79 E-value=7.8e-19 Score=142.10 Aligned_cols=133 Identities=26% Similarity=0.390 Sum_probs=110.7
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhh----
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLA---- 104 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~---- 104 (237)
....+++++|+.||++++ +|+..||..+++.+|..+++.++..++..+|.+++|.|+|++|+.++.+........
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 456789999999999999 999999999999999999999999999999999999999999999998755432211
Q ss_pred hhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhhch-----HHHHHHHhccCCCCcchhhHHHHHHHH
Q psy11508 105 INFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGNV-----FSQLVQQIMVDSTGRVVEYRRLFMQCF 173 (237)
Q Consensus 105 ~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg~~-----~~~mi~~~D~DgDG~I~~~~~~f~~~~ 173 (237)
..+.++++.| |.+++|+|+..+++.++..+|+. +..|++++|.|+||.| .|.+ |..++
T Consensus 85 ~el~eaF~~f---------D~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i-~f~e-f~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVF---------DKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKV-NFEE-FVKMM 147 (151)
T ss_pred HHHHHHHHHH---------ccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeE-eHHH-HHHHH
Confidence 1344444333 78899999999999888888754 4689999999999999 7865 54444
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=135.67 Aligned_cols=127 Identities=21% Similarity=0.310 Sum_probs=110.3
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHh
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFF 108 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~ 108 (237)
+++++++++|.+||++++ .|+..+|..+|+.+|.++++.++..++..+|. +.+.|+|.+|+.+|............+.
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 567899999999999999 99999999999999999999999999999998 8999999999999987665444444455
Q ss_pred hhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhhch-----HHHHHHHhccCCCCcchhhHH
Q psy11508 109 TWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGNV-----FSQLVQQIMVDSTGRVVEYRR 167 (237)
Q Consensus 109 ~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg~~-----~~~mi~~~D~DgDG~I~~~~~ 167 (237)
.+++.| |.+++|+|+.-++..+.+.+|+. +..|++.+|+|+||.| +|++
T Consensus 96 ~aF~~f---------D~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i-~~~e 149 (160)
T COG5126 96 EAFKLF---------DKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEI-DYEE 149 (160)
T ss_pred HHHHHh---------CCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceE-eHHH
Confidence 555555 88999999998888888888765 4579999999999999 6766
No 3
>KOG0028|consensus
Probab=99.68 E-value=4.4e-16 Score=125.39 Aligned_cols=125 Identities=20% Similarity=0.297 Sum_probs=107.3
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHh
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFF 108 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~ 108 (237)
.+.++++.+|..||.+++ +|+.+||+.+++++|+.+..+++..++..+|.++.|.|+|++|...|............+.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 345789999999999999 9999999999999999999999999999999999999999999999877654433333333
Q ss_pred hhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhhc-----hHHHHHHHhccCCCCcch
Q psy11508 109 TWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGN-----VFSQLVQQIMVDSTGRVV 163 (237)
Q Consensus 109 ~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg~-----~~~~mi~~~D~DgDG~I~ 163 (237)
..++.| |.+.+|.|+.-.++.+.+.+|+ .+.+||.++|.|+||.|+
T Consensus 110 ~afrl~---------D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevn 160 (172)
T KOG0028|consen 110 KAFRLF---------DDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVN 160 (172)
T ss_pred HHHHcc---------cccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccccccccc
Confidence 333322 7789999999999999999998 677899999999999994
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.59 E-value=8.1e-15 Score=119.46 Aligned_cols=88 Identities=32% Similarity=0.477 Sum_probs=84.4
Q ss_pred CCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcee
Q psy11508 8 LYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKS 86 (237)
Q Consensus 8 g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~ 86 (237)
|.+.|+|.+|+ .+|...+...+..+++++||+.||+|++ +|+..+|..+|+.+|..+++++++.+++.+|.+++|.|+
T Consensus 68 ~~~~idf~~Fl-~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~ 146 (160)
T COG5126 68 GNETVDFPEFL-TVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEID 146 (160)
T ss_pred CCCccCHHHHH-HHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEe
Confidence 67899999999 9999998888889999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q psy11508 87 TTLHIQGTCK 96 (237)
Q Consensus 87 feEF~~~~~~ 96 (237)
|++|++++..
T Consensus 147 ~~eF~~~~~~ 156 (160)
T COG5126 147 YEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 5
>KOG0027|consensus
Probab=99.59 E-value=8.2e-15 Score=118.53 Aligned_cols=92 Identities=34% Similarity=0.448 Sum_probs=83.2
Q ss_pred eecCCCCccCHHHHHHHHHHhhcCCCC----cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q psy11508 4 IALHLYCSNRSKEFLQSSITDKLMKKD----PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78 (237)
Q Consensus 4 ~~~~g~g~IdF~EFl~~~~~~~l~~~~----~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D 78 (237)
.+.+|+|.|+|+||+ .++.+...... ..+++++||+.||+||+ +|+.+||+.+|..+|.+.+.++++.+++.+|
T Consensus 53 ~D~dg~g~I~~~eF~-~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d 131 (151)
T KOG0027|consen 53 IDLDGDGTIDFEEFL-DLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVD 131 (151)
T ss_pred hCCCCCCeEcHHHHH-HHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcC
Confidence 367899999999999 88887655433 34599999999999999 9999999999999999999999999999999
Q ss_pred CCCCCceeHHHHHHHHhc
Q psy11508 79 LNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 79 ~d~dG~I~feEF~~~~~~ 96 (237)
.|+||.|+|++|+++|..
T Consensus 132 ~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 132 VDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CCCCCeEeHHHHHHHHhc
Confidence 999999999999999864
No 6
>PTZ00183 centrin; Provisional
Probab=99.51 E-value=2.1e-13 Score=109.27 Aligned_cols=133 Identities=23% Similarity=0.313 Sum_probs=102.1
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHh
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFF 108 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~ 108 (237)
.+..++..+|..+|.+++ +|+..||..+++.+|..++..++..++..+|.+++|.|+|+||+.++.......... .
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~---~ 90 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPR---E 90 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcH---H
Confidence 456789999999999999 999999999999999989999999999999999999999999999876432211111 1
Q ss_pred hhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhh-----chHHHHHHHhccCCCCcchhhHHHHHHHH
Q psy11508 109 TWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVG-----NVFSQLVQQIMVDSTGRVVEYRRLFMQCF 173 (237)
Q Consensus 109 ~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg-----~~~~~mi~~~D~DgDG~I~~~~~~f~~~~ 173 (237)
.+...|... |.+++|.|+..+.......++ ..+..++..+|.|++|.| .|.+ |..++
T Consensus 91 ~l~~~F~~~------D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i-~~~e-f~~~~ 152 (158)
T PTZ00183 91 EILKAFRLF------DDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEI-SEEE-FYRIM 152 (158)
T ss_pred HHHHHHHHh------CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC-cHHH-HHHHH
Confidence 222333322 778999999877665555443 345679999999999998 6665 44443
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.49 E-value=8.5e-13 Score=104.29 Aligned_cols=128 Identities=23% Similarity=0.356 Sum_probs=99.5
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHh
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFF 108 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~ 108 (237)
...+.++.+|..+|.+++ .|+.+||..++..+|.+++.+++..++..+|.+++|.|+|++|+.++..............
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 345679999999999999 9999999999999999999999999999999999999999999998865322111111122
Q ss_pred hhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhh-----chHHHHHHHhccCCCCcchhhHH
Q psy11508 109 TWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVG-----NVFSQLVQQIMVDSTGRVVEYRR 167 (237)
Q Consensus 109 ~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg-----~~~~~mi~~~D~DgDG~I~~~~~ 167 (237)
. .|... |.+++|.|+..+.......++ +.+..+++.+|.|++|+| .|.+
T Consensus 88 ~---~F~~~------D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i-~~~e 141 (149)
T PTZ00184 88 E---AFKVF------DRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQI-NYEE 141 (149)
T ss_pred H---HHHhh------CCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcC-cHHH
Confidence 2 33222 778899999877665555443 346789999999999999 6665
No 8
>KOG0030|consensus
Probab=99.48 E-value=2.8e-13 Score=106.92 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=105.4
Q ss_pred CCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC--CCCceeHHHHHHHHhccccchhhh
Q psy11508 28 KKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLN--QDGKKSTTLHIQGTCKSSKLSRLA 104 (237)
Q Consensus 28 ~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d--~dG~I~feEF~~~~~~~~~~~~~~ 104 (237)
.+++..+++++|.+||..++ +|+..+...+||++|.+||+.++.+.+.+.+.+ +-..|+|++|+-++........ .
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~-q 84 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD-Q 84 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc-c
Confidence 35778999999999999999 999999999999999999999999999998876 4468999999999876443321 1
Q ss_pred hhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhhchHHHH----HHHhccCCCCcchhhHHHHHH
Q psy11508 105 INFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQL----VQQIMVDSTGRVVEYRRLFMQ 171 (237)
Q Consensus 105 ~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg~~~~~m----i~~~D~DgDG~I~~~~~~f~~ 171 (237)
....++.+-++.. |++++|.|...+++.+...+|+.+++. +..=-.|++|.| +|+.+...
T Consensus 85 ~t~edfvegLrvF------Dkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i-~YE~fVk~ 148 (152)
T KOG0030|consen 85 GTYEDFVEGLRVF------DKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCI-NYEAFVKH 148 (152)
T ss_pred CcHHHHHHHHHhh------cccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcC-cHHHHHHH
Confidence 1223333323221 889999999999999999999988642 222245889999 88875543
No 9
>KOG0028|consensus
Probab=99.44 E-value=5.5e-13 Score=107.54 Aligned_cols=91 Identities=34% Similarity=0.418 Sum_probs=86.9
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCC
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG 83 (237)
+.+|.|.|+|++|+ ..|+..+...++.++++.+|+.+|.|++ +|+..+|+.+.+.||.+++++++.+|+.++|.+++|
T Consensus 79 dk~~~g~i~fe~f~-~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dg 157 (172)
T KOG0028|consen 79 DKEGSGKITFEDFR-RVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDG 157 (172)
T ss_pred hhccCceechHHHH-HHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccc
Confidence 45789999999999 9999888888999999999999999999 999999999999999999999999999999999999
Q ss_pred ceeHHHHHHHHhc
Q psy11508 84 KKSTTLHIQGTCK 96 (237)
Q Consensus 84 ~I~feEF~~~~~~ 96 (237)
.|+-+||+.+|.+
T Consensus 158 evneeEF~~imk~ 170 (172)
T KOG0028|consen 158 EVNEEEFIRIMKK 170 (172)
T ss_pred cccHHHHHHHHhc
Confidence 9999999999865
No 10
>KOG0031|consensus
Probab=99.37 E-value=8.4e-12 Score=100.18 Aligned_cols=125 Identities=22% Similarity=0.358 Sum_probs=101.4
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHh
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFF 108 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~ 108 (237)
.+++++++||.++|.|++ .|+.++|+..+.++|..+++++++.|+++. .|.|+|.-|+.++........+...+.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~ 104 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVIL 104 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHH
Confidence 568999999999999999 999999999999999999999999999864 679999999999987665444443444
Q ss_pred hhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhh-----chHHHHHHHhccCCCCcchhhHHH
Q psy11508 109 TWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVG-----NVFSQLVQQIMVDSTGRVVEYRRL 168 (237)
Q Consensus 109 ~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg-----~~~~~mi~~~D~DgDG~I~~~~~~ 168 (237)
.++..| |.+++|.|....++..+..-| +.+++|++.+=.|..|.| +|+.+
T Consensus 105 ~AF~~F---------D~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~-dy~~~ 159 (171)
T KOG0031|consen 105 NAFKTF---------DDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNF-DYKAF 159 (171)
T ss_pred HHHHhc---------CccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCce-eHHHH
Confidence 444444 778999998765554444444 456789999999999999 88873
No 11
>PTZ00183 centrin; Provisional
Probab=99.33 E-value=1.4e-11 Score=98.71 Aligned_cols=92 Identities=38% Similarity=0.474 Sum_probs=80.9
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCC
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG 83 (237)
+.+++|.|+|.||+ ..+..........+.++.+|+.+|++++ +|+..||..++..+|..+++.++..++..+|.+++|
T Consensus 63 d~~~~g~i~~~eF~-~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g 141 (158)
T PTZ00183 63 DKDGSGKIDFEEFL-DIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDG 141 (158)
T ss_pred CCCCCCcEeHHHHH-HHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Confidence 56789999999999 7766544445567789999999999999 999999999999999999999999999999999999
Q ss_pred ceeHHHHHHHHhcc
Q psy11508 84 KKSTTLHIQGTCKS 97 (237)
Q Consensus 84 ~I~feEF~~~~~~~ 97 (237)
.|+|++|..++...
T Consensus 142 ~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 142 EISEEEFYRIMKKT 155 (158)
T ss_pred cCcHHHHHHHHhcc
Confidence 99999999988653
No 12
>PTZ00184 calmodulin; Provisional
Probab=99.30 E-value=2.2e-11 Score=96.18 Aligned_cols=90 Identities=30% Similarity=0.471 Sum_probs=79.0
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCC
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG 83 (237)
+.+++|.|+|++|+ .++...+......+.+..+|+.||.+++ +|+.+|+..+++.+|..++.+++..++..+|.+++|
T Consensus 57 d~~~~g~i~~~ef~-~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g 135 (149)
T PTZ00184 57 DADGNGTIDFPEFL-TLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG 135 (149)
T ss_pred CcCCCCcCcHHHHH-HHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCC
Confidence 56788999999999 7776554444556788999999999999 999999999999999999999999999999999999
Q ss_pred ceeHHHHHHHHh
Q psy11508 84 KKSTTLHIQGTC 95 (237)
Q Consensus 84 ~I~feEF~~~~~ 95 (237)
.|+|+||+.++.
T Consensus 136 ~i~~~ef~~~~~ 147 (149)
T PTZ00184 136 QINYEEFVKMMM 147 (149)
T ss_pred cCcHHHHHHHHh
Confidence 999999998875
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.23 E-value=2.5e-11 Score=90.11 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHHHhHhcC-CCC-ccCHHHHHHHHHH-hCCCCCH-HHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFAG-DKD-FIDFDTLKNIAGV-IGEDVTD-EELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD~-d~d-~Is~~EL~~~L~~-lG~~~t~-~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...++.+|+.||+ +++ +|+.+||+.+|+. +|..++. ++++.+++.+|.|+||.|+|+||+.++..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4679999999999 999 9999999999999 9988888 99999999999999999999999999865
No 14
>KOG0037|consensus
Probab=99.21 E-value=1.1e-10 Score=98.62 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=78.0
Q ss_pred eeecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q psy11508 3 LIALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81 (237)
Q Consensus 3 ~~~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~ 81 (237)
+-+-+..|.|+|+||. .++.. +...+.+|+.||+|++ +|+..||+.+|..+|..++++-++.+++++|..+
T Consensus 102 mfd~~~~G~i~f~EF~-~Lw~~-------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~ 173 (221)
T KOG0037|consen 102 MFDRDNSGTIGFKEFK-ALWKY-------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFG 173 (221)
T ss_pred HhcCCCCCccCHHHHH-HHHHH-------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcccc
Confidence 3366789999999999 88864 6789999999999999 9999999999999999999999999999999887
Q ss_pred CCceeHHHHHHHHh
Q psy11508 82 DGKKSTTLHIQGTC 95 (237)
Q Consensus 82 dG~I~feEF~~~~~ 95 (237)
+|.|.|++|++++.
T Consensus 174 ~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 174 GGRIDFDDFIQCCV 187 (221)
T ss_pred CCceeHHHHHHHHH
Confidence 99999999999874
No 15
>KOG0031|consensus
Probab=99.20 E-value=1.3e-10 Score=93.43 Aligned_cols=89 Identities=26% Similarity=0.348 Sum_probs=85.1
Q ss_pred CCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCce
Q psy11508 7 HLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKK 85 (237)
Q Consensus 7 ~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I 85 (237)
.++|+|+|.-|| .++..++...++++.+..||+.||.++. +|..+.|+.+|...|..++++||+.+++.+-.+..|.|
T Consensus 76 Ea~gPINft~FL-TmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~ 154 (171)
T KOG0031|consen 76 EAPGPINFTVFL-TMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNF 154 (171)
T ss_pred hCCCCeeHHHHH-HHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCce
Confidence 468899999999 9999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eHHHHHHHHhc
Q psy11508 86 STTLHIQGTCK 96 (237)
Q Consensus 86 ~feEF~~~~~~ 96 (237)
+|..|+.++..
T Consensus 155 dy~~~~~~ith 165 (171)
T KOG0031|consen 155 DYKAFTYIITH 165 (171)
T ss_pred eHHHHHHHHHc
Confidence 99999999873
No 16
>KOG0034|consensus
Probab=99.19 E-value=1.4e-10 Score=97.24 Aligned_cols=92 Identities=28% Similarity=0.296 Sum_probs=77.1
Q ss_pred cCCCCc-cCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-CCCCC--HHHH----HHHHHh
Q psy11508 6 LHLYCS-NRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GEDVT--DEEL----ADMIKE 76 (237)
Q Consensus 6 ~~g~g~-IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-G~~~t--~~el----~~li~~ 76 (237)
.+++|. |+|++|+ ..++.+.+.....++++-||++||.+++ +|+.+||..++..+ |...+ ++.+ +.++.+
T Consensus 77 ~~~~~~~v~F~~Fv-~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e 155 (187)
T KOG0034|consen 77 TDGNGDPVDFEEFV-RLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEE 155 (187)
T ss_pred ccCCCCccCHHHHH-HHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH
Confidence 344555 9999999 9999888777777799999999999999 99999999999986 44444 4444 556778
Q ss_pred hcCCCCCceeHHHHHHHHhccc
Q psy11508 77 FDLNQDGKKSTTLHIQGTCKSS 98 (237)
Q Consensus 77 ~D~d~dG~I~feEF~~~~~~~~ 98 (237)
+|.|+||.|+|+||.+++.+.+
T Consensus 156 ~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 156 ADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred hCCCCCCcCcHHHHHHHHHcCc
Confidence 9999999999999999998754
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.16 E-value=1.3e-10 Score=80.64 Aligned_cols=61 Identities=33% Similarity=0.530 Sum_probs=54.0
Q ss_pred HHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHH----HHHHHhhcCCCCCceeHHHHHHHH
Q psy11508 34 SLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEEL----ADMIKEFDLNQDGKKSTTLHIQGT 94 (237)
Q Consensus 34 ~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el----~~li~~~D~d~dG~I~feEF~~~~ 94 (237)
+++++|+.||+|++ +|+.+||..+++.++..++++++ ..+++.+|.+++|.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999 99999999999999977766555 445899999999999999999875
No 18
>KOG0037|consensus
Probab=99.14 E-value=9.3e-10 Score=93.11 Aligned_cols=132 Identities=20% Similarity=0.184 Sum_probs=110.5
Q ss_pred HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC-CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhh
Q psy11508 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-EDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFT 109 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG-~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~ 109 (237)
-..+...|...|+|+. +|+.+||+.+|...+ -.++.+.+..|+.-+|.+.+|+|+|.||..++. .+..
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~----------~i~~ 125 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK----------YINQ 125 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH----------HHHH
Confidence 4578999999999999 999999999999764 457889999999999999999999999999864 3678
Q ss_pred hhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhhchH-----HHHHHHhccCCCCcchhhHHHHHHHHHHHHHhhh
Q psy11508 110 WYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVF-----SQLVQQIMVDSTGRVVEYRRLFMQCFENLRMAMT 181 (237)
Q Consensus 110 ~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg~~~-----~~mi~~~D~DgDG~I~~~~~~f~~~~~~~r~~~~ 181 (237)
|...|+.. |.|++|.|+..+++.....+|=.+ .-+++..|.-+.|+| .|.+ |.+|.-.|+..++
T Consensus 126 Wr~vF~~~------D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i-~FD~-FI~ccv~L~~lt~ 194 (221)
T KOG0037|consen 126 WRNVFRTY------DRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRI-DFDD-FIQCCVVLQRLTE 194 (221)
T ss_pred HHHHHHhc------ccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCce-eHHH-HHHHHHHHHHHHH
Confidence 98888654 899999999999888888876443 348889998889998 8887 7777767665444
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.14 E-value=2.4e-10 Score=84.67 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=60.6
Q ss_pred HHHHHHHHhHhc-CCCC-c-cCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFA-GDKD-F-IDFDTLKNIAGV-----IGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD-~d~d-~-Is~~EL~~~L~~-----lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...++++|+.|| ++|+ . |+.+||+.+|+. +|..+++++++.+++.+|.|++|.|+|+||+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 457999999998 7999 7 999999999999 899999999999999999999999999999998764
No 20
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.02 E-value=1.4e-09 Score=80.87 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhc-CCCC-c-cCHHHHHHHHHH-hC----CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFA-GDKD-F-IDFDTLKNIAGV-IG----EDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD-~d~d-~-Is~~EL~~~L~~-lG----~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
.+.++++|+.|| ++++ + |+..||+.+|+. +| ..+++++++.++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467999999997 9999 8 999999999986 54 4578999999999999999999999999998864
No 21
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.99 E-value=1.6e-09 Score=80.77 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=59.4
Q ss_pred HHHHHHHHhHhcC-CC-C-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFAG-DK-D-FIDFDTLKNIAGV-----IGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD~-d~-d-~Is~~EL~~~L~~-----lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...++.+|+.||. || + +|+.+||+.+|+. +|..+++++++.+++.+|.+++|.|+|+||+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4679999999997 97 8 9999999999987 577889999999999999999999999999998864
No 22
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.98 E-value=2.4e-09 Score=79.98 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=56.8
Q ss_pred HHHHHHHHhHhc-CCCC-c-cCHHHHHHHHHH-h----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFA-GDKD-F-IDFDTLKNIAGV-I----GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD-~d~d-~-Is~~EL~~~L~~-l----G~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...+.++|+.|| +||+ . |+.+||+.+|+. + +...++.+++.+++.+|.|++|.|+|+||+.++..
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 456888999999 7898 6 999999999977 3 34558889999999999999999999999999864
No 23
>KOG0038|consensus
Probab=98.98 E-value=1.7e-09 Score=86.47 Aligned_cols=92 Identities=23% Similarity=0.262 Sum_probs=76.9
Q ss_pred cCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-CCCCCHHHHH----HHHHhhcC
Q psy11508 6 LHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GEDVTDEELA----DMIKEFDL 79 (237)
Q Consensus 6 ~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-G~~~t~~el~----~li~~~D~ 79 (237)
-+|.|+++|++|+ .+++.........-+..-||++||-|++ +|...+|...++++ .-.++++|+. .+++++|.
T Consensus 82 eDG~GnlsfddFl-DmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~ 160 (189)
T KOG0038|consen 82 EDGRGNLSFDDFL-DMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADL 160 (189)
T ss_pred cCCCCcccHHHHH-HHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999 9887765444445577889999999999 99999999999987 3457888864 45778899
Q ss_pred CCCCceeHHHHHHHHhccc
Q psy11508 80 NQDGKKSTTLHIQGTCKSS 98 (237)
Q Consensus 80 d~dG~I~feEF~~~~~~~~ 98 (237)
|+||+++|.||.+++.+.+
T Consensus 161 DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 161 DGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred CCCCcccHHHHHHHHHhCc
Confidence 9999999999999887644
No 24
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.96 E-value=3e-09 Score=78.81 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=59.1
Q ss_pred HHHHHHHHhHhcC-CC-C-ccCHHHHHHHHH---HhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFAG-DK-D-FIDFDTLKNIAG---VIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD~-d~-d-~Is~~EL~~~L~---~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...+..+|+.||. +| + +|+.+||+.+|+ .+|.+++++++.++++.+|.|++|.|+|+||+.++..
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4568889999998 78 6 999999999997 3799999999999999999999999999999998864
No 25
>KOG0034|consensus
Probab=98.93 E-value=1.3e-08 Score=85.33 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=88.8
Q ss_pred CcHHHHHHHHhHhcCC-CC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCc-eeHHHHHHHHhccccchhhhhh
Q psy11508 30 DPEESLNEAFDLFAGD-KD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK-KSTTLHIQGTCKSSKLSRLAIN 106 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d-~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~-I~feEF~~~~~~~~~~~~~~~~ 106 (237)
.+...+...|..+|.+ ++ +|+.+||..+.. +..++ -...++..++.+++|. |+|++|++.+.-..........
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHHH-HhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHH
Confidence 3566788899999999 88 999999999993 34333 4677888888888887 9999999998765443222211
Q ss_pred HhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHh------------hchHHHHHHHhccCCCCcc--hhhHH
Q psy11508 107 FFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQV------------GNVFSQLVQQIMVDSTGRV--VEYRR 167 (237)
Q Consensus 107 ~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~l------------g~~~~~mi~~~D~DgDG~I--~~~~~ 167 (237)
++= +|+. .|.+++|.|++.+...+.... ...++.++.++|.|+||+| .+|++
T Consensus 106 l~f---aF~v------YD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 106 LRF---AFRV------YDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCK 171 (187)
T ss_pred HHH---HHHH------hcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 222 3332 288999999987665543332 2234569999999999999 45554
No 26
>KOG0044|consensus
Probab=98.90 E-value=5.7e-09 Score=87.85 Aligned_cols=90 Identities=24% Similarity=0.354 Sum_probs=74.4
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh----CC-------CCCHHHHHH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI----GE-------DVTDEELAD 72 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l----G~-------~~t~~el~~ 72 (237)
+.+++|.|+|.||+ ..++..+ .....+.+..+|++||.||+ +|+..|+-.+++++ |. .-.++-+..
T Consensus 74 D~~~dg~i~F~Efi-~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~ 151 (193)
T KOG0044|consen 74 DKNKDGTIDFLEFI-CALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDK 151 (193)
T ss_pred cccCCCCcCHHHHH-HHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHH
Confidence 56889999999999 7766544 45677889999999999999 99999999888874 32 113455788
Q ss_pred HHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 73 MIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 73 li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
+++.+|.|+||.|+++||+.....
T Consensus 152 if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 152 IFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHcCCCCCCcccHHHHHHHhhh
Confidence 999999999999999999998764
No 27
>KOG0030|consensus
Probab=98.90 E-value=4.4e-09 Score=83.28 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=73.1
Q ss_pred CccCHHHHHHHHHHhhcCC--CCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcee
Q psy11508 10 CSNRSKEFLQSSITDKLMK--KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKS 86 (237)
Q Consensus 10 g~IdF~EFl~~~~~~~l~~--~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~ 86 (237)
.+|+|++|+ .++.+..++ .-.-+.+.+..+.||++|+ +|...||+.+|..+|..++++|++.++.-.. |.+|.|+
T Consensus 64 ~rl~FE~fL-pm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~ 141 (152)
T KOG0030|consen 64 KRLDFEEFL-PMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCIN 141 (152)
T ss_pred hhhhHHHHH-HHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCc
Confidence 579999999 888765543 3345789999999999999 9999999999999999999999999998754 7789999
Q ss_pred HHHHHHHHh
Q psy11508 87 TTLHIQGTC 95 (237)
Q Consensus 87 feEF~~~~~ 95 (237)
|+.|++.+.
T Consensus 142 YE~fVk~i~ 150 (152)
T KOG0030|consen 142 YEAFVKHIM 150 (152)
T ss_pred HHHHHHHHh
Confidence 999998653
No 28
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.89 E-value=5.8e-09 Score=71.88 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=54.6
Q ss_pred HHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 36 NEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 36 ~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
+.+|+.+|++++ .|+.+|+..+++.+|. +++++..++..+|.+++|.|+|+||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 678999999999 9999999999999885 8889999999999999999999999998753
No 29
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.88 E-value=7e-09 Score=76.14 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=59.0
Q ss_pred cHHHHHHHHhHhcC--CCC-ccCHHHHHHHHHH-hCCCC----CHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 31 PEESLNEAFDLFAG--DKD-FIDFDTLKNIAGV-IGEDV----TDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 31 ~~~~l~~aF~~fD~--d~d-~Is~~EL~~~L~~-lG~~~----t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
+++.++.+|+.||+ +++ +|+.+||..+++. +|.++ +++++..++..+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 46779999999999 899 9999999999986 56544 5999999999999999999999999998864
No 30
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.87 E-value=8.5e-09 Score=77.13 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=59.8
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
.+...++.+|+.||++++ .|+.+||+.+|+..| ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 456789999999999999 999999999999976 68899999999999999999999999998764
No 31
>KOG0044|consensus
Probab=98.86 E-value=1.6e-08 Score=85.07 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=70.7
Q ss_pred CCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcee
Q psy11508 8 LYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKS 86 (237)
Q Consensus 8 g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~ 86 (237)
.+|.++-++|. .+++...+..+...-...+|+.||+|++ +|+..|+..+|..+-....++-+...++.+|.|++|.|+
T Consensus 40 P~G~~~~~~F~-~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 40 PSGRLTLEEFR-EIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCCccCHHHHH-HHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEc
Confidence 46788888888 8888777766777777888999999888 999888888887765556667777888888888899999
Q ss_pred HHHHHHHHhc
Q psy11508 87 TTLHIQGTCK 96 (237)
Q Consensus 87 feEF~~~~~~ 96 (237)
++|++.++..
T Consensus 119 ~~Eml~iv~~ 128 (193)
T KOG0044|consen 119 KEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHHH
Confidence 9888888753
No 32
>PLN02964 phosphatidylserine decarboxylase
Probab=98.80 E-value=2e-08 Score=98.01 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=76.1
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC-CCCCHHH---HHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhh
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-EDVTDEE---LADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAI 105 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG-~~~t~~e---l~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~ 105 (237)
+.++++++|+.||+|++ +| |..+++.+| ..+++++ ++.+++.+|.+++|.|+|+||+.++...... ....
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~-~seE 215 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNL-VAAN 215 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccC-CCHH
Confidence 46789999999999999 97 999999999 5899887 8999999999999999999999998753211 1112
Q ss_pred hHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHH
Q psy11508 106 NFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQ 142 (237)
Q Consensus 106 ~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~ 142 (237)
.+..+++.| |.+++|.|+..++......
T Consensus 216 EL~eaFk~f---------DkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 216 KKEELFKAA---------DLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHh---------CCCCCCcCCHHHHHHHHHh
Confidence 244444333 6788999988766655444
No 33
>KOG0036|consensus
Probab=98.78 E-value=6.7e-08 Score=88.59 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=97.4
Q ss_pred HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhh
Q psy11508 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGED-VTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFT 109 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~-~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~ 109 (237)
+.+++..|+.||.+++ .++..+|...+.++..+ +..+....++..+|.|.||.++|+||.+.+..... .+
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~------~l-- 84 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKEL------EL-- 84 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHH------HH--
Confidence 4568899999999999 99999999999999877 67777888999999999999999999998864221 11
Q ss_pred hhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhhchH-----HHHHHHhccCCCCcc--hhhHHHH
Q psy11508 110 WYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVF-----SQLVQQIMVDSTGRV--VEYRRLF 169 (237)
Q Consensus 110 ~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg~~~-----~~mi~~~D~DgDG~I--~~~~~~f 169 (237)
.+.| .+.|.+.+|.|...+.....+.+|..+ ..+++.+|.||++.| .+++.++
T Consensus 85 -~~~F------~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 85 -YRIF------QSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred -HHHH------hhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 2233 233788999999887777777766544 358899999999999 4666543
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.76 E-value=4.6e-08 Score=64.69 Aligned_cols=60 Identities=38% Similarity=0.553 Sum_probs=56.8
Q ss_pred HHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy11508 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGT 94 (237)
Q Consensus 35 l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~ 94 (237)
+..+|+.+|.+++ .|+.+|+..+++.++.+.+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999 99999999999999999999999999999999999999999998765
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.74 E-value=4.6e-08 Score=72.60 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=57.0
Q ss_pred HHHHHHHHhH-hcCCCC--ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDL-FAGDKD--FIDFDTLKNIAGVI-----GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~-fD~d~d--~Is~~EL~~~L~~l-----G~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...+..+|+. +|++|+ +|+.+||+.++... +...++.+++.+++.+|.|+||.|+|+||+.++..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4678999999 678885 89999999999875 44567899999999999999999999999998864
No 36
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.73 E-value=3.4e-08 Score=65.81 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=46.2
Q ss_pred ccCHHHHHHHHHHhCCC-CCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 48 FIDFDTLKNIAGVIGED-VTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~-~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
.|+.++|+.+|+.+|.+ ++++++..++..+|.+++|.|+|+||+.++.
T Consensus 4 ~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp EEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred EECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 89999999999889999 9999999999999999999999999999875
No 37
>PF14658 EF-hand_9: EF-hand domain
Probab=98.69 E-value=5.7e-08 Score=67.85 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=56.6
Q ss_pred HHHhHhcCCCC-ccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCC-CceeHHHHHHHHhc
Q psy11508 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGE-DVTDEELADMIKEFDLNQD-GKKSTTLHIQGTCK 96 (237)
Q Consensus 37 ~aF~~fD~d~d-~Is~~EL~~~L~~lG~-~~t~~el~~li~~~D~d~d-G~I~feEF~~~~~~ 96 (237)
.+|++||+++. .|...+|..+|++++. .+++.+++.+.+.+|+++. |.|+|+.|+.+|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 37999999999 9999999999999988 9999999999999999988 99999999999864
No 38
>KOG0036|consensus
Probab=98.63 E-value=1.5e-07 Score=86.24 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=80.3
Q ss_pred eecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCC
Q psy11508 4 IALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQD 82 (237)
Q Consensus 4 ~~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~d 82 (237)
++.+.+|++||.||. ..+.. .+.++.++|+..|.++| .|+.+|+...|+.+|.+++++++..+++.+|.+++
T Consensus 60 ~d~~~dg~vDy~eF~-~Y~~~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~ 132 (463)
T KOG0036|consen 60 MDANRDGRVDYSEFK-RYLDN------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGK 132 (463)
T ss_pred cccCcCCcccHHHHH-HHHHH------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCC
Confidence 467889999999999 77753 46789999999999999 99999999999999999999999999999999999
Q ss_pred CceeHHHHHHHHhccc
Q psy11508 83 GKKSTTLHIQGTCKSS 98 (237)
Q Consensus 83 G~I~feEF~~~~~~~~ 98 (237)
+.|+++||...+.-.+
T Consensus 133 ~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 133 ATIDLEEWRDHLLLYP 148 (463)
T ss_pred eeeccHHHHhhhhcCC
Confidence 9999999998776554
No 39
>KOG4223|consensus
Probab=98.59 E-value=3.6e-07 Score=81.52 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=105.9
Q ss_pred cCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccc------
Q psy11508 26 LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSS------ 98 (237)
Q Consensus 26 l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~------ 98 (237)
++...+.+.+..+|..+|.+++ +|+.+||+..+...-......++..-+..+|.+.||.|+|+|+...+....
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~ 149 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEF 149 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCcccc
Confidence 3445678899999999999999 999999999987655445556677788889999999999999998776431
Q ss_pred cc---hhh-hhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHH--HH----hhchHHHHHHHhccCCCCcchhhHHH
Q psy11508 99 KL---SRL-AINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVS--KQ----VGNVFSQLVQQIMVDSTGRVVEYRRL 168 (237)
Q Consensus 99 ~~---~~~-~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~--~~----lg~~~~~mi~~~D~DgDG~I~~~~~~ 168 (237)
.. ... ...+..+.++|+++ |.+++|.++..+...-. .. ..-.+.+-+.+.|+||||.| ++.++
T Consensus 150 ~d~e~~~~~~km~~rDe~rFk~A------D~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I-~~eEf 222 (325)
T KOG4223|consen 150 PDEEDNEEYKKMIARDEERFKAA------DQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKI-SLEEF 222 (325)
T ss_pred ccchhcHHHHHHHHHHHHHHhhc------ccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCce-eHHHH
Confidence 11 111 11245555678766 67888888864322111 11 11124567889999999999 88887
Q ss_pred HHHHHHHHHHhhhhhccCccchhhh
Q psy11508 169 FMQCFENLRMAMTLVQGGEASEKVQ 193 (237)
Q Consensus 169 f~~~~~~~r~~~~~~~~~~~~~~~~ 193 (237)
+-.+.. -...+++|+.|.
T Consensus 223 igd~~~-------~~~~~~epeWv~ 240 (325)
T KOG4223|consen 223 IGDLYS-------HEGNEEEPEWVL 240 (325)
T ss_pred HhHHhh-------ccCCCCCccccc
Confidence 765542 122566666654
No 40
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.56 E-value=2.3e-07 Score=68.56 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=56.8
Q ss_pred HHHHHHHHhHhcCC--CC-ccCHHHHHHHHH-HhCCCCC----HHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFAGD--KD-FIDFDTLKNIAG-VIGEDVT----DEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD~d--~d-~Is~~EL~~~L~-~lG~~~t----~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...+...|+.|+.+ .+ +|+.+||+.+|. .+|..++ +++++.++..+|.+++|.|+|+||+.++..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45688899999865 36 999999999997 5676677 899999999999999999999999998864
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.51 E-value=4.2e-07 Score=70.70 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=54.1
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
...++..+|..+|.|++ +|+.+||..+. ..+.+..+..++..+|.|+||.||++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34678999999999999 99999999876 345678899999999999999999999999883
No 42
>KOG0041|consensus
Probab=98.44 E-value=4.3e-07 Score=76.21 Aligned_cols=67 Identities=31% Similarity=0.378 Sum_probs=62.4
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
.+++.+..+|+.||.+.| +|+..||+..|..||.+-|.--++.+++++|.|.||+|+|-||+-++.+
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 356788999999999999 9999999999999999999999999999999999999999999988764
No 43
>KOG4223|consensus
Probab=98.36 E-value=2.4e-06 Score=76.36 Aligned_cols=149 Identities=14% Similarity=0.082 Sum_probs=96.7
Q ss_pred ecCCCCccCHHHHHHHHHHhhc-------CCCCc------HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC-CCCCHHH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKL-------MKKDP------EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-EDVTDEE 69 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l-------~~~~~------~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG-~~~t~~e 69 (237)
+.+.+|.|+|+|++ ..+.... ..... ...=+.-|+.-|.|++ .++.+||...|.=-. ..+.+=-
T Consensus 123 d~~~Dg~i~~eey~-~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iV 201 (325)
T KOG4223|consen 123 DKNKDGFITWEEYL-PQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIV 201 (325)
T ss_pred ccCccceeeHHHhh-hhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHH
Confidence 56789999999999 5443211 11111 1123456999999999 999999998875221 1122233
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHhccccc-hhhhh--hHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhh--
Q psy11508 70 LADMIKEFDLNQDGKKSTTLHIQGTCKSSKL-SRLAI--NFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVG-- 144 (237)
Q Consensus 70 l~~li~~~D~d~dG~I~feEF~~~~~~~~~~-~~~~~--~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg-- 144 (237)
+.+-+...|.|+||.|+++||+.=|...... ..+.. .-++ .|.... |.+++|.+...+++......+
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere---~F~~~~-----DknkDG~L~~dEl~~WI~P~~~d 273 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTERE---QFFEFR-----DKNKDGKLDGDELLDWILPSEQD 273 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHH---HHHHHh-----hcCCCCccCHHHHhcccCCCCcc
Confidence 5666788999999999999999977765431 11111 1122 232222 789999999876654322211
Q ss_pred ---chHHHHHHHhccCCCCcc
Q psy11508 145 ---NVFSQLVQQIMVDSTGRV 162 (237)
Q Consensus 145 ---~~~~~mi~~~D~DgDG~I 162 (237)
.....|+-+.|.|+||++
T Consensus 274 ~A~~EA~hL~~eaD~dkD~kL 294 (325)
T KOG4223|consen 274 HAKAEARHLLHEADEDKDGKL 294 (325)
T ss_pred HHHHHHHHHhhhhccCccccc
Confidence 234579999999999998
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.19 E-value=8.5e-06 Score=79.81 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=59.5
Q ss_pred HHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 35 l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
+..+|+.+|.|++ .|+.+||..++..++...+++++..+++.+|.|++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 8999999999999 9999999999999998889999999999999999999999999999876
No 45
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.15 E-value=1.4e-05 Score=59.44 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=54.4
Q ss_pred HHHHHHHHhHhcCCCCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 32 EESLNEAFDLFAGDKDFIDFDTLKNIAGV-----IGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d~Is~~EL~~~L~~-----lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
...+..+|+.|-.++.+++..||+.+|++ ++.+-++..++.+++..|.|+||.|+|.||+.++..
T Consensus 7 i~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 7 MEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45678899999833229999999999975 345557889999999999999999999999999864
No 46
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.09 E-value=1.8e-05 Score=58.67 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=45.5
Q ss_pred CC-CCCcccccchhhhHHHH-hh------chHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHhhhhhccCc
Q psy11508 124 PS-TPSGEITRLDESLVSKQ-VG------NVFSQLVQQIMVDSTGRVVEYRRLFMQCFENLRMAMTLVQGGE 187 (237)
Q Consensus 124 d~-~~~g~I~~~~~~~~~~~-lg------~~~~~mi~~~D~DgDG~I~~~~~~f~~~~~~~r~~~~~~~~~~ 187 (237)
|. +++|.|+..+++..... +| +.+.+|++.+|+|+||+| .|.+ |+.++..|=.++--..|++
T Consensus 18 d~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I-~F~E-F~~l~~~l~~~~~~~~~~~ 87 (89)
T cd05022 18 SVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKL-SFEE-FWELIGELAKAVKGEKHLE 87 (89)
T ss_pred hCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCC-cHHH-HHHHHHHHHHHHHHHhhcc
Confidence 55 89999999888876666 55 357789999999999999 8888 6666665544443334443
No 47
>KOG2643|consensus
Probab=98.08 E-value=3.5e-05 Score=71.47 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=105.1
Q ss_pred eeecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh------CC----CCC-----
Q psy11508 3 LIALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI------GE----DVT----- 66 (237)
Q Consensus 3 ~~~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l------G~----~~t----- 66 (237)
+-+++.+|-|+|.||+ -++. .+. .++..++-||++||.||| -|+.+||..+.+-+ |. .++
T Consensus 207 F~~lg~~GLIsfSdYi-FLlT-lLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~ 282 (489)
T KOG2643|consen 207 FYKLGESGLISFSDYI-FLLT-LLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSF 282 (489)
T ss_pred EEEcCCCCeeeHHHHH-HHHH-HHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCcccccee
Confidence 3468899999999999 4443 332 345678999999999999 99999998877432 21 011
Q ss_pred HHHHHHHH--HhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHh-
Q psy11508 67 DEELADMI--KEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQV- 143 (237)
Q Consensus 67 ~~el~~li--~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~l- 143 (237)
..++..-+ .-+..++++++++++|++++.+.... -+..-+.++ +...+|.|+..+-....-..
T Consensus 283 ~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~E-----il~lEF~~~---------~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 283 KVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQEE-----ILELEFERF---------DKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred hhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHHH-----HHHHHHHHh---------CcccccccCHHHHHHHHHHHc
Confidence 11222222 23578899999999999998642211 011111222 34456889875433222111
Q ss_pred h-------chHHHHHHHhccCCCCcc--hhhHHHH--------------HHHH-------HHHHHhhhhhccCccchhhh
Q psy11508 144 G-------NVFSQLVQQIMVDSTGRV--VEYRRLF--------------MQCF-------ENLRMAMTLVQGGEASEKVQ 193 (237)
Q Consensus 144 g-------~~~~~mi~~~D~DgDG~I--~~~~~~f--------------~~~~-------~~~r~~~~~~~~~~~~~~~~ 193 (237)
+ ..+..+-+.+.-++-| | .+|..+| ...+ .-+++++..+-|-+-|.||-
T Consensus 349 ~~n~~~k~~~lkrvk~kf~~~~~g-ISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVv 427 (489)
T KOG2643|consen 349 GVNSKKKHKYLKRVKEKFKDDGKG-ISLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVV 427 (489)
T ss_pred ccchHhHHHHHHHHHHhccCCCCC-cCHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCccccccee
Confidence 1 1233455555555555 6 4555533 1111 12567777777777777776
Q ss_pred cccccc
Q psy11508 194 ENLTCI 199 (237)
Q Consensus 194 ~~~~~~ 199 (237)
+-+-||
T Consensus 428 dvvF~I 433 (489)
T KOG2643|consen 428 DVVFTI 433 (489)
T ss_pred eeEEEE
Confidence 655443
No 48
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.06 E-value=2.1e-05 Score=54.12 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHhhchHHH
Q psy11508 70 LADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQ 149 (237)
Q Consensus 70 l~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg~~~~~ 149 (237)
+..+++.+|.+++|.|+.+||..++........ ...+.+.+..
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-------------------------------------~~~~~~~~~~ 44 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-------------------------------------DEESDEMIDQ 44 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-------------------------------------HHHHHHHHHH
Confidence 678899999999999999999998754221100 1122234566
Q ss_pred HHHHhccCCCCcchhhHH
Q psy11508 150 LVQQIMVDSTGRVVEYRR 167 (237)
Q Consensus 150 mi~~~D~DgDG~I~~~~~ 167 (237)
+++.+|+|+||.| .|.+
T Consensus 45 ~~~~~D~d~dG~i-~~~E 61 (66)
T PF13499_consen 45 IFREFDTDGDGRI-SFDE 61 (66)
T ss_dssp HHHHHTTTSSSSE-EHHH
T ss_pred HHHHhCCCCcCCC-cHHH
Confidence 8999999999999 6666
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.85 E-value=2.4e-05 Score=45.86 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 69 ELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 69 el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
|++.+++.+|.|+||.|+++||..++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 467778888888888888888877765
No 50
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.81 E-value=2.4e-05 Score=45.93 Aligned_cols=28 Identities=39% Similarity=0.616 Sum_probs=25.8
Q ss_pred HHHHHHhHhcCCCC-ccCHHHHHHHHHHh
Q psy11508 34 SLNEAFDLFAGDKD-FIDFDTLKNIAGVI 61 (237)
Q Consensus 34 ~l~~aF~~fD~d~d-~Is~~EL~~~L~~l 61 (237)
+++++|+.||+||+ +|+.+||..+|++|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47899999999999 99999999999875
No 51
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.81 E-value=2.4e-05 Score=46.25 Aligned_cols=29 Identities=48% Similarity=0.875 Sum_probs=24.6
Q ss_pred HHHHHHhHhcCCCC-ccCHHHHHHHHH-HhC
Q psy11508 34 SLNEAFDLFAGDKD-FIDFDTLKNIAG-VIG 62 (237)
Q Consensus 34 ~l~~aF~~fD~d~d-~Is~~EL~~~L~-~lG 62 (237)
+++.+|+.||+|++ +|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 47889999999999 999999999998 676
No 52
>KOG0377|consensus
Probab=97.69 E-value=0.00015 Score=67.58 Aligned_cols=90 Identities=18% Similarity=0.310 Sum_probs=69.3
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCC-----------CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh----CCCCCHH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKK-----------DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI----GEDVTDE 68 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~-----------~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l----G~~~t~~ 68 (237)
....+|.+.|.+-+ ..+..-.... .....+..+|+.+|+|++ .||.+||+.+.+-+ ...++++
T Consensus 509 ~~s~d~~v~Y~~~~-~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~ 587 (631)
T KOG0377|consen 509 NGSDDGKVEYKSTL-DNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDD 587 (631)
T ss_pred CCCcCcceehHhHH-HHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHH
Confidence 44567778777776 4443211100 012357789999999999 99999999998865 5678999
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 69 ELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 69 el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
++.++.+.+|.|+||.|++.||+....
T Consensus 588 ~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 588 EILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 999999999999999999999998764
No 53
>KOG0040|consensus
Probab=97.68 E-value=0.00025 Score=73.74 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=84.0
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCC-------CHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchh
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDV-------TDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSR 102 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~-------t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~ 102 (237)
+..++.-+|+.||++.+ .++..+|+.||+++|+.+ ++++++.++..+|++.+|.|+..+|+.+|.++....-
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI 2330 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI 2330 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc
Confidence 44567789999999999 999999999999999876 2347999999999999999999999999987654321
Q ss_pred h-hhhHhhhhHHHHHhhhhcCCCCCCCcccccchh--hhHHHHhhchHHHHHHHhccC
Q psy11508 103 L-AINFFTWYPHFRASLMEVSPPSTPSGEITRLDE--SLVSKQVGNVFSQLVQQIMVD 157 (237)
Q Consensus 103 ~-~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~--~~~~~~lg~~~~~mi~~~D~D 157 (237)
. ...+.. +|++. +. +..+|+..++ .++-++..=.++.|-.-+|+-
T Consensus 2331 ~s~~eIE~---AfraL------~a-~~~yvtke~~~~~ltreqaefc~s~m~~~~e~~ 2378 (2399)
T KOG0040|consen 2331 LSSEEIED---AFRAL------DA-GKPYVTKEELYQNLTREQAEFCMSKMKPYAETS 2378 (2399)
T ss_pred cchHHHHH---HHHHh------hc-CCccccHHHHHhcCCHHHHHHHHHHhhhhcccc
Confidence 1 113333 44432 22 5667877666 344444434456676666663
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.65 E-value=0.00015 Score=47.98 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=43.0
Q ss_pred CCccCHHHHHHHHHHhhcCCC-CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHH
Q psy11508 9 YCSNRSKEFLQSSITDKLMKK-DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGV 60 (237)
Q Consensus 9 ~g~IdF~EFl~~~~~~~l~~~-~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~ 60 (237)
+|.|+.++|. .++ ..+... ...+++..+|..+|.+++ +|+.+||..++..
T Consensus 2 ~G~i~~~~~~-~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFR-RAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHH-HHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHH-HHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6899999999 888 444444 677889999999999999 9999999998874
No 55
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.60 E-value=0.00021 Score=47.36 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=40.0
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
+++.+|++.+|+.+++.+++..+..+++.+|.+++|.++.+||..++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 467899999999999999999999999999999999999999998874
No 56
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.52 E-value=0.00037 Score=64.84 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 28 KKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 28 ~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
.......++.+|+.||.+|+ +|+.+||.. ++.++..+|.|+||.|+++||...+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34556789999999999999 999999941 578899999999999999999998754
No 57
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.49 E-value=0.00046 Score=51.34 Aligned_cols=51 Identities=6% Similarity=0.208 Sum_probs=37.7
Q ss_pred CCCCCc-ccccchhhhHHHH-hh---------chHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Q psy11508 124 PSTPSG-EITRLDESLVSKQ-VG---------NVFSQLVQQIMVDSTGRVVEYRRLFMQCFENL 176 (237)
Q Consensus 124 d~~~~g-~I~~~~~~~~~~~-lg---------~~~~~mi~~~D~DgDG~I~~~~~~f~~~~~~~ 176 (237)
+.+++| .|+..+++..... .+ ..+.+|++++|+|+||.| +|.+ |+.++..|
T Consensus 21 d~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~I-df~E-F~~l~~~l 82 (93)
T cd05026 21 GKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEV-DFNE-FVVLVAAL 82 (93)
T ss_pred ccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCC-CHHH-HHHHHHHH
Confidence 467898 5998877766643 11 247899999999999999 8887 55555544
No 58
>KOG0038|consensus
Probab=97.48 E-value=0.00019 Score=57.79 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=55.0
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHh-------
Q psy11508 71 ADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQV------- 143 (237)
Q Consensus 71 ~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~l------- 143 (237)
+.+.+.+..||.|.++|++|+.++.-.....+.. +++.......|-++++.|...++......+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrd---------lK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~ 144 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRD---------LKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSD 144 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHH---------hhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCH
Confidence 3455667789999999999999875332211111 111112244577899999987665544332
Q ss_pred ---hchHHHHHHHhccCCCCcchhhHH
Q psy11508 144 ---GNVFSQLVQQIMVDSTGRVVEYRR 167 (237)
Q Consensus 144 ---g~~~~~mi~~~D~DgDG~I~~~~~ 167 (237)
.-....+|.++|.||||++ .|.+
T Consensus 145 eEv~~i~ekvieEAD~DgDgkl-~~~e 170 (189)
T KOG0038|consen 145 EEVELICEKVIEEADLDGDGKL-SFAE 170 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCCcc-cHHH
Confidence 1123579999999999999 4443
No 59
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.47 E-value=0.00058 Score=52.08 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 29 KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 29 ~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
..+.+.+..+|+..|. ++ +|+.++.+.++..-| ++.+.+..+....|.+++|.++++||+-.|.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3567889999999985 67 999999999999877 6778999999999999999999999988764
No 60
>KOG0377|consensus
Probab=97.39 E-value=0.0014 Score=61.20 Aligned_cols=133 Identities=15% Similarity=0.185 Sum_probs=84.2
Q ss_pred HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-CCCCCHHHHHHHHHh-hcCCCCCceeHHHHHHHHhccccchhhhhh-H
Q psy11508 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GEDVTDEELADMIKE-FDLNQDGKKSTTLHIQGTCKSSKLSRLAIN-F 107 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-G~~~t~~el~~li~~-~D~d~dG~I~feEF~~~~~~~~~~~~~~~~-~ 107 (237)
..++...|+.+|.+.+ +|+......++.++ |.+++ +..+-.. +..+.+|.+.|.+....+............ +
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP---Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLP---WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCc---HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 3578899999999999 99999999999874 66554 3333322 355678899999888877643322111111 1
Q ss_pred hhhhH---HHHHhhhhcCCCCCCCcccccchhhhHHHHhh---------chHHHHHHHhccCCCCcc--hhhHHHH
Q psy11508 108 FTWYP---HFRASLMEVSPPSTPSGEITRLDESLVSKQVG---------NVFSQLVQQIMVDSTGRV--VEYRRLF 169 (237)
Q Consensus 108 ~~~~~---~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~lg---------~~~~~mi~~~D~DgDG~I--~~~~~~f 169 (237)
..+.. .+...+.. -|.|.+|.|+-.+-+...+.++ ..+.++-+.+|.|+||.| +||.+.|
T Consensus 540 etLYr~ks~LetiF~~--iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNI--IDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHHHhchhhHHHHHHH--hccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 11111 11111111 2788999999766555555543 235678889999999999 3444433
No 61
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.30 E-value=0.00095 Score=49.25 Aligned_cols=47 Identities=11% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCCCc-ccccchhhhHHHH-----hhc-----hHHHHHHHhccCCCCcchhhHHHHHHHH
Q psy11508 125 STPSG-EITRLDESLVSKQ-----VGN-----VFSQLVQQIMVDSTGRVVEYRRLFMQCF 173 (237)
Q Consensus 125 ~~~~g-~I~~~~~~~~~~~-----lg~-----~~~~mi~~~D~DgDG~I~~~~~~f~~~~ 173 (237)
.+++| .|+..+++..++. +|. .+.++++++|.|+||+| +|.+ |+.++
T Consensus 20 ~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v-~f~e-F~~li 77 (88)
T cd05027 20 REGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGEC-DFQE-FMAFV 77 (88)
T ss_pred cCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcC-cHHH-HHHHH
Confidence 68899 5999888877776 553 37789999999999999 8887 44444
No 62
>KOG0751|consensus
Probab=97.29 E-value=0.0013 Score=62.06 Aligned_cols=118 Identities=16% Similarity=0.066 Sum_probs=81.5
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC------CCCCHHHHHHHHHhh
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG------EDVTDEELADMIKEF 77 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG------~~~t~~el~~li~~~ 77 (237)
|.-.+|-|+|+||. .+ ...+. .+......+|+.||+.++ .+|.+++..++.... ++.+.+-+...+.
T Consensus 84 D~tKDglisf~eF~-af-e~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg-- 157 (694)
T KOG0751|consen 84 DQTKDGLISFQEFR-AF-ESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG-- 157 (694)
T ss_pred hhcccccccHHHHH-HH-Hhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh--
Confidence 44557899999999 44 33333 235678899999999999 999999999998753 2344444554443
Q ss_pred cCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHHh
Q psy11508 78 DLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQV 143 (237)
Q Consensus 78 D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~l 143 (237)
.+..-.++|.+|.+++.+... ....++|+.. |..++|.|+.++-+..+..+
T Consensus 158 -~~~~r~~ny~~f~Q~lh~~~~--------E~~~qafr~~------d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 158 -DIRKRHLNYAEFTQFLHEFQL--------EHAEQAFREK------DKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred -hHHHHhccHHHHHHHHHHHHH--------HHHHHHHHHh------cccCCCeeeeechHhhhhhh
Confidence 233457999999999865332 2234455543 67899999998777665553
No 63
>KOG2643|consensus
Probab=97.25 E-value=0.0014 Score=61.11 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=86.7
Q ss_pred cCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-CCCCCH--HHHHHHHHhhcCCC
Q psy11508 6 LHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GEDVTD--EELADMIKEFDLNQ 81 (237)
Q Consensus 6 ~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-G~~~t~--~el~~li~~~D~d~ 81 (237)
.+|++.++++||+ ..+.. .+++-+.--|..+|+..+ .|+..++..+|-.. +.+... ..++.+-+.++.+
T Consensus 297 ~rg~~kLs~deF~-~F~e~-----Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~- 369 (489)
T KOG2643|consen 297 KRGNGKLSIDEFL-KFQEN-----LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD- 369 (489)
T ss_pred cCCCccccHHHHH-HHHHH-----HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-
Confidence 4788999999999 87765 345666778999999999 99999999887765 333322 2456666777655
Q ss_pred CCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHH-hhchHH-----HHHHHhc
Q psy11508 82 DGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQ-VGNVFS-----QLVQQIM 155 (237)
Q Consensus 82 dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~-lg~~~~-----~mi~~~D 155 (237)
+-.|+++||.++..=... +....-++.... ...+.|+.-+.+.+... .|..++ -++.-+|
T Consensus 370 ~~gISl~Ef~~Ff~Fl~~-------l~dfd~Al~fy~-------~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD 435 (489)
T KOG2643|consen 370 GKGISLQEFKAFFRFLNN-------LNDFDIALRFYH-------MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFD 435 (489)
T ss_pred CCCcCHHHHHHHHHHHhh-------hhHHHHHHHHHH-------HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEc
Confidence 456999999887642221 111111211111 12333444333333322 344443 3667789
Q ss_pred cCCCCcchhhHH
Q psy11508 156 VDSTGRVVEYRR 167 (237)
Q Consensus 156 ~DgDG~I~~~~~ 167 (237)
-|+||.+ -+.+
T Consensus 436 ~N~Dg~L-S~~E 446 (489)
T KOG2643|consen 436 ENNDGTL-SHKE 446 (489)
T ss_pred cCCCCcc-cHHH
Confidence 9999998 4444
No 64
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.24 E-value=0.0013 Score=48.72 Aligned_cols=64 Identities=9% Similarity=0.256 Sum_probs=42.3
Q ss_pred hHhhhhHHHHHhhhhcCCCCCCCc-ccccchhhhHHHHh----------hchHHHHHHHhccCCCCcchhhHHHHHHHHH
Q psy11508 106 NFFTWYPHFRASLMEVSPPSTPSG-EITRLDESLVSKQV----------GNVFSQLVQQIMVDSTGRVVEYRRLFMQCFE 174 (237)
Q Consensus 106 ~~~~~~~~f~~~~~~~~~d~~~~g-~I~~~~~~~~~~~l----------g~~~~~mi~~~D~DgDG~I~~~~~~f~~~~~ 174 (237)
.+..+...|.... +.+++| .|+..+++...... ...+.+|++++|.|+||.| +|.+ |..++.
T Consensus 7 ~i~~l~~~F~~y~-----~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I-~f~E-F~~l~~ 79 (89)
T cd05023 7 CIESLIAVFQKYA-----GKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQL-DFQE-FLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHh-----ccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcC-cHHH-HHHHHH
Confidence 3455556665533 456665 89887665544332 1357889999999999999 8887 545554
Q ss_pred HH
Q psy11508 175 NL 176 (237)
Q Consensus 175 ~~ 176 (237)
.|
T Consensus 80 ~l 81 (89)
T cd05023 80 GL 81 (89)
T ss_pred HH
Confidence 33
No 65
>KOG4666|consensus
Probab=97.20 E-value=0.0008 Score=60.60 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=77.2
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHH-hCCCCCHHHHHHHHHhhcCCCC
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGV-IGEDVTDEELADMIKEFDLNQD 82 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~-lG~~~t~~el~~li~~~D~d~d 82 (237)
+-+++|.+||.|.+ .-++-.+..+....-++-+|+.|+.+.| .+...+|..+|+. +|.. .-.+-.++..++...+
T Consensus 269 de~~tg~~D~re~v-~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~lf~~i~q~d~ 345 (412)
T KOG4666|consen 269 DEGTTGNGDYRETV-KTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVLFPSIEQKDD 345 (412)
T ss_pred cCCCCCcccHHHHh-hhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeeccccchhhhcccC
Confidence 56889999999999 7777777777788889999999999999 9999999999986 4643 2346678888898999
Q ss_pred CceeHHHHHHHHhcccc
Q psy11508 83 GKKSTTLHIQGTCKSSK 99 (237)
Q Consensus 83 G~I~feEF~~~~~~~~~ 99 (237)
|+|+|++|-+++...+.
T Consensus 346 ~ki~~~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 346 PKIYASNFRKFAATEPN 362 (412)
T ss_pred cceeHHHHHHHHHhCch
Confidence 99999999998876553
No 66
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.98 E-value=0.0013 Score=37.05 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=15.0
Q ss_pred HHHHHhhcCCCCCceeHHHHHHH
Q psy11508 71 ADMIKEFDLNQDGKKSTTLHIQG 93 (237)
Q Consensus 71 ~~li~~~D~d~dG~I~feEF~~~ 93 (237)
+.++..+|.|+||.|+++||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45566667777777777776654
No 67
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.79 E-value=0.00068 Score=52.43 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=45.7
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQ 92 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~ 92 (237)
....+.--|..+|.|++ .++..||..+...+ .+.+.-+..++...|.|+||.|++.|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 44667788999999999 99999999887655 45666789999999999999999999975
No 68
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.77 E-value=0.0053 Score=39.77 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=43.6
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIA 58 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L 58 (237)
+.+++|.|++++|. .++... ....+.+.+..+|+.+|.+++ .|+.+++..++
T Consensus 10 d~~~~g~l~~~e~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 10 DKDGDGTISADELK-AALKSL-GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCCCCcCcHHHHH-HHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999 777653 345667889999999999999 99999998765
No 69
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.77 E-value=0.0055 Score=45.12 Aligned_cols=48 Identities=6% Similarity=0.263 Sum_probs=35.9
Q ss_pred CCCCcc-cccchhhhHHHH-hh---------chHHHHHHHhccCCCCcchhhHHHHHHHHH
Q psy11508 125 STPSGE-ITRLDESLVSKQ-VG---------NVFSQLVQQIMVDSTGRVVEYRRLFMQCFE 174 (237)
Q Consensus 125 ~~~~g~-I~~~~~~~~~~~-lg---------~~~~~mi~~~D~DgDG~I~~~~~~f~~~~~ 174 (237)
.+++|. |+..+.+...+. +| +.+.++++.+|+|++|.| .|.+ |+.++.
T Consensus 21 ~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I-~f~e-F~~l~~ 79 (92)
T cd05025 21 KEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEV-DFQE-FVVLVA 79 (92)
T ss_pred ccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcC-cHHH-HHHHHH
Confidence 789994 998777766653 32 346789999999999999 7877 444443
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.70 E-value=0.0018 Score=36.53 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.3
Q ss_pred HHHHHhHhcCCCC-ccCHHHHHHHH
Q psy11508 35 LNEAFDLFAGDKD-FIDFDTLKNIA 58 (237)
Q Consensus 35 l~~aF~~fD~d~d-~Is~~EL~~~L 58 (237)
++.+|+.+|.|++ .|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999 99999998864
No 71
>KOG4251|consensus
Probab=96.51 E-value=0.006 Score=53.21 Aligned_cols=60 Identities=17% Similarity=0.037 Sum_probs=46.1
Q ss_pred HHHHHHHhHhcCCCC-ccCHHHHHHHHHH-h--CCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy11508 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGV-I--GEDVTDEELADMIKEFDLNQDGKKSTTLHIQ 92 (237)
Q Consensus 33 ~~l~~aF~~fD~d~d-~Is~~EL~~~L~~-l--G~~~t~~el~~li~~~D~d~dG~I~feEF~~ 92 (237)
..+..+|...|.|.+ +|+..|+++.+.. . .+.-..++-+..+..+|.|+||.|+++||.-
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 578899999999999 9999999987664 2 1112223344567778999999999999954
No 72
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.43 E-value=0.0054 Score=35.97 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 69 ELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 69 el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
++..+++.+|.|++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999886
No 73
>KOG0046|consensus
Probab=96.41 E-value=0.0083 Score=57.19 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=57.3
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCC---CHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDV---TDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~---t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
.....++..|...| +++ +|+..+|..++...+... ..++++.++...+.|.+|.|+|++|+.++..
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 34567888999999 899 999999999999886543 5889999999999999999999999997653
No 74
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.37 E-value=0.0061 Score=45.11 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=46.1
Q ss_pred cCC-CCccCHHHHHHHHHHhh----cCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCC
Q psy11508 6 LHL-YCSNRSKEFLQSSITDK----LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGE 63 (237)
Q Consensus 6 ~~g-~g~IdF~EFl~~~~~~~----l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~ 63 (237)
.+| +|.|+..|+. .++... +....+.+++..+|+.+|.+++ .|+.+||..++..++.
T Consensus 20 ~dg~dG~Is~~El~-~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 20 KDGDKNTLSRKELK-KLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred cCCCCCeECHHHHH-HHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 366 6999999999 877542 2233456789999999999999 9999999999887664
No 75
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.36 E-value=0.015 Score=43.14 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=47.8
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-----CCCCCH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-----GEDVTD 67 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-----G~~~t~ 67 (237)
+.+++|.|++.|+. .++.. . .-+.+++..+|..+|.+++ +|+.+||..++..+ |.+++.
T Consensus 20 D~d~~G~Is~~el~-~~l~~-~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~ 84 (96)
T smart00027 20 DKNQDGTVTGAQAK-PILLK-S--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPA 84 (96)
T ss_pred CCCCCCeEeHHHHH-HHHHH-c--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCc
Confidence 56789999999999 77765 2 2456789999999999999 99999999888754 555543
No 76
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.31 E-value=0.019 Score=38.86 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=44.3
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI 61 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l 61 (237)
+.+++|.|+.+|+. .++... . .+.+.+..+|+.+|.+++ .|+.+|+..++..+
T Consensus 9 D~~~~G~i~~~el~-~~l~~~-g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 9 DPDGDGLISGDEAR-PFLGKS-G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCCCCCcCcHHHHH-HHHHHc-C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56789999999999 777542 2 366789999999999999 99999999887653
No 77
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.30 E-value=0.017 Score=42.46 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=45.2
Q ss_pred CC-CCccCHHHHHHHHHHhh--cCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh
Q psy11508 7 HL-YCSNRSKEFLQSSITDK--LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI 61 (237)
Q Consensus 7 ~g-~g~IdF~EFl~~~~~~~--l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l 61 (237)
+| .|.|+.+||. .++.+. +....+.+++.++|+.+|.|++ .|+.+||..++..+
T Consensus 23 ~~~~g~Is~~EL~-~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 23 EGDKNTLSKKELK-ELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCCCCEECHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 44 7899999999 888642 3455677899999999999999 99999998888765
No 78
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.27 E-value=0.014 Score=42.32 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=44.2
Q ss_pred CCCCccCHHHHHHHHHHhhcCC----CCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh
Q psy11508 7 HLYCSNRSKEFLQSSITDKLMK----KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI 61 (237)
Q Consensus 7 ~g~g~IdF~EFl~~~~~~~l~~----~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l 61 (237)
+++|.|+..||. .++...+.. ....+++..+++.+|.+++ .|+.+++..++..+
T Consensus 22 ~~~G~Is~~el~-~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 22 GDKDTLSKKELK-ELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCCCcCcHHHHH-HHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 689999999999 877543322 2346789999999999999 99999999988764
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.96 E-value=0.036 Score=51.75 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=25.5
Q ss_pred CCCCCcccccchhhhHHHHhhchHHHHHHHhccCCCCcchhhHHHH
Q psy11508 124 PSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLF 169 (237)
Q Consensus 124 d~~~~g~I~~~~~~~~~~~lg~~~~~mi~~~D~DgDG~I~~~~~~f 169 (237)
|.+++|.|+..+.. . ...|+..+|+|+||+| .++++.
T Consensus 344 D~dgdG~Is~~E~~-~-------~~~~F~~~D~d~DG~I-s~eEf~ 380 (391)
T PRK12309 344 DLDGDGFITREEWL-G-------SDAVFDALDLNHDGKI-TPEEMR 380 (391)
T ss_pred CCCCCCcCcHHHHH-H-------HHHHHHHhCCCCCCCC-cHHHHH
Confidence 56677777665431 1 3558999999999999 666633
No 80
>KOG4065|consensus
Probab=95.95 E-value=0.037 Score=42.99 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=45.4
Q ss_pred HHHHhHhcCCCC-ccCHHHHHHHHHHh------CC----CCCHHHHHHHHHh----hcCCCCCceeHHHHHHH
Q psy11508 36 NEAFDLFAGDKD-FIDFDTLKNIAGVI------GE----DVTDEELADMIKE----FDLNQDGKKSTTLHIQG 93 (237)
Q Consensus 36 ~~aF~~fD~d~d-~Is~~EL~~~L~~l------G~----~~t~~el~~li~~----~D~d~dG~I~feEF~~~ 93 (237)
-..|++.|-|++ +|+--||..++.-. |. -+++.|+..++.. -|.|+||.|+|.||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 347899999999 99999999988753 32 1467777776654 58889999999999864
No 81
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.84 E-value=0.023 Score=41.65 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=43.5
Q ss_pred CCCccCHHHHHHHHHHhhcCCCCc----HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh
Q psy11508 8 LYCSNRSKEFLQSSITDKLMKKDP----EESLNEAFDLFAGDKD-FIDFDTLKNIAGVI 61 (237)
Q Consensus 8 g~g~IdF~EFl~~~~~~~l~~~~~----~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l 61 (237)
.+|.|+..||. .++...+....+ .+++..+|+.+|.+++ .|+.+||..++..+
T Consensus 23 ~~~~Is~~El~-~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFK-QLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHH-HHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 47899999999 888654433233 7889999999999999 99999999888764
No 82
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.81 E-value=0.027 Score=43.71 Aligned_cols=49 Identities=18% Similarity=0.054 Sum_probs=41.5
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAG 59 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~ 59 (237)
+.|++|.|+.+|.. .+. + ......+...|+.+|.|++ .||.+|+..++.
T Consensus 58 D~d~DG~Ls~~EL~-~~~---l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 58 DGNYDGKLSHHELA-PIR---L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred CCCCCCcCCHHHHH-HHH---c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 77899999999999 665 1 2345678889999999999 999999999983
No 83
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.35 E-value=0.053 Score=38.94 Aligned_cols=63 Identities=17% Similarity=0.367 Sum_probs=51.4
Q ss_pred HHHHHHhHhcCCCC-ccCHHHHHHHHHHh-CC-CCCHHHHHHHHHhhcCC----CCCceeHHHHHHHHhcc
Q psy11508 34 SLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GE-DVTDEELADMIKEFDLN----QDGKKSTTLHIQGTCKS 97 (237)
Q Consensus 34 ~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-G~-~~t~~el~~li~~~D~d----~dG~I~feEF~~~~~~~ 97 (237)
++..+|+.+-. +. .|+.++|...|+.- +. ..+.+++..++..+..+ ..+.+++++|..+|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 47889999955 67 99999999999875 43 46899999999987544 46899999999998653
No 84
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.29 E-value=0.025 Score=30.62 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=17.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 70 LADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 70 l~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
+..+++.+|.+++|.|++.+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45666777777777777777776654
No 85
>KOG0041|consensus
Probab=95.18 E-value=0.048 Score=46.29 Aligned_cols=45 Identities=13% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCCCCcccccchhhhHHHHhhch-----HHHHHHHhccCCCCcchhhHHHH
Q psy11508 124 PSTPSGEITRLDESLVSKQVGNV-----FSQLVQQIMVDSTGRVVEYRRLF 169 (237)
Q Consensus 124 d~~~~g~I~~~~~~~~~~~lg~~-----~~~mi~~~D~DgDG~I~~~~~~f 169 (237)
|.+.+|+|+-.+++..+..+|.- +..||+++|-|-||+| -|++++
T Consensus 109 De~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgkl-Sfrefl 158 (244)
T KOG0041|consen 109 DEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKL-SFREFL 158 (244)
T ss_pred cccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccch-hHHHHH
Confidence 56677777777766666666543 3579999999999999 677644
No 86
>KOG2562|consensus
Probab=95.18 E-value=0.061 Score=50.69 Aligned_cols=121 Identities=15% Similarity=0.204 Sum_probs=76.6
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCC---CCcH---------HHHHHH---HhHhcCCCC-ccCHHHHHHHHHHhCCCCCHH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMK---KDPE---------ESLNEA---FDLFAGDKD-FIDFDTLKNIAGVIGEDVTDE 68 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~---~~~~---------~~l~~a---F~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~ 68 (237)
+..+.|.|+..+-++.-+...+.+ .... +....+ |-.+|+|++ .|+.++|...-. ..++.-
T Consensus 235 nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ 311 (493)
T KOG2562|consen 235 NRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTER 311 (493)
T ss_pred CCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhH
Confidence 456788888888663322222211 1111 223334 556699999 999999987643 345677
Q ss_pred HHHHHHHhh----cCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhh
Q psy11508 69 ELADMIKEF----DLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESL 138 (237)
Q Consensus 69 el~~li~~~----D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~ 138 (237)
-++.++.++ -...+|+++|++|+.++........ ...+.=|++.+ |.+++|.|+..+++.
T Consensus 312 ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t-~~SleYwFrcl---------Dld~~G~Lt~~el~~ 375 (493)
T KOG2562|consen 312 IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDT-PASLEYWFRCL---------DLDGDGILTLNELRY 375 (493)
T ss_pred HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCC-ccchhhheeee---------eccCCCcccHHHHHH
Confidence 788898833 3457899999999998765332211 12345565544 788999999765544
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.16 E-value=0.025 Score=30.62 Aligned_cols=26 Identities=46% Similarity=0.749 Sum_probs=23.5
Q ss_pred HHHHHhHhcCCCC-ccCHHHHHHHHHH
Q psy11508 35 LNEAFDLFAGDKD-FIDFDTLKNIAGV 60 (237)
Q Consensus 35 l~~aF~~fD~d~d-~Is~~EL~~~L~~ 60 (237)
++.+|+.+|.+++ .|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 6789999999999 9999999998875
No 88
>KOG0751|consensus
Probab=94.99 E-value=0.52 Score=45.13 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=17.0
Q ss_pred HHHHHHHhccCCCCcc--hhhHHHH
Q psy11508 147 FSQLVQQIMVDSTGRV--VEYRRLF 169 (237)
Q Consensus 147 ~~~mi~~~D~DgDG~I--~~~~~~f 169 (237)
..+-+++-|+.++|.| -+|+..+
T Consensus 181 ~~qafr~~d~~~ng~is~Ldfq~im 205 (694)
T KOG0751|consen 181 AEQAFREKDKAKNGFISVLDFQDIM 205 (694)
T ss_pred HHHHHHHhcccCCCeeeeechHhhh
Confidence 3467888999999998 3666533
No 89
>KOG2562|consensus
Probab=94.63 E-value=0.1 Score=49.16 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=62.6
Q ss_pred cCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHH-------hCCC-C-CHHHHHHHHH
Q psy11508 6 LHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGV-------IGED-V-TDEELADMIK 75 (237)
Q Consensus 6 ~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~-------lG~~-~-t~~el~~li~ 75 (237)
...+|+++|++|+ .++... ...+....+.-+|+.+|-+|+ .|+..||+-..+. .|.. + -++-+.+++.
T Consensus 326 ~~~eGrmdykdFv-~FilA~-e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~D 403 (493)
T KOG2562|consen 326 VKVEGRMDYKDFV-DFILAE-EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRD 403 (493)
T ss_pred eeecCcccHHHHH-HHHHHh-ccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 3467889999999 766543 334556789999999999999 9999999876553 2322 2 2444566666
Q ss_pred hhcCCCCCceeHHHHHH
Q psy11508 76 EFDLNQDGKKSTTLHIQ 92 (237)
Q Consensus 76 ~~D~d~dG~I~feEF~~ 92 (237)
-+-+...+.|+..+|..
T Consensus 404 MvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 404 MVKPEDENKITLQDLKG 420 (493)
T ss_pred HhCccCCCceeHHHHhh
Confidence 66667788999999976
No 90
>KOG4251|consensus
Probab=93.36 E-value=0.59 Score=41.05 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhh-----hHHHHh
Q psy11508 69 ELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDES-----LVSKQV 143 (237)
Q Consensus 69 el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~-----~~~~~l 143 (237)
-+++++..+|.|+|..++..||+.+.-..........--..|.+.-...+.+. -|.+.+|.++..++. +.....
T Consensus 237 mVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeEl-IDsNhDGivTaeELe~y~dP~n~~~a 315 (362)
T KOG4251|consen 237 MVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEEL-IDSNHDGIVTAEELEDYVDPQNFRLA 315 (362)
T ss_pred HHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHH-hhcCCccceeHHHHHhhcCchhhhhh
Confidence 35677888999999999999999875443221100000011111111111111 155667777653221 111112
Q ss_pred hchHHHHHHHhccCCCCcc
Q psy11508 144 GNVFSQLVQQIMVDSTGRV 162 (237)
Q Consensus 144 g~~~~~mi~~~D~DgDG~I 162 (237)
.+...+++.-.|.|+|-++
T Consensus 316 lne~~~~ma~~d~n~~~~L 334 (362)
T KOG4251|consen 316 LNEVNDIMALTDANNDEKL 334 (362)
T ss_pred HHHHHHHHhhhccCCCccc
Confidence 2334566667777777776
No 91
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.16 E-value=0.44 Score=35.46 Aligned_cols=54 Identities=6% Similarity=0.090 Sum_probs=43.9
Q ss_pred CCCccCHHHHHHHHHHhh----cCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC
Q psy11508 8 LYCSNRSKEFLQSSITDK----LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG 62 (237)
Q Consensus 8 g~g~IdF~EFl~~~~~~~----l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG 62 (237)
..+.++..||. .++.+- +........+.++|+.+|.|+| .|+..|+..++..+.
T Consensus 20 ~~~tLsk~Elk-~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 20 EKNYLNRDDLQ-KLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCCcCCHHHHH-HHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45689999999 888544 3445567789999999999999 999999998887653
No 92
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.93 E-value=0.79 Score=37.21 Aligned_cols=61 Identities=10% Similarity=0.206 Sum_probs=46.4
Q ss_pred HHHHhHh---cCCCC-ccCHHHHHHHHHHhC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 36 NEAFDLF---AGDKD-FIDFDTLKNIAGVIG---EDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 36 ~~aF~~f---D~d~d-~Is~~EL~~~L~~lG---~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
+.+|..| -+.+. .++...+..+|+.+| ..++...++-++..+-..+...|+|++|+..|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4555555 34455 999999999999875 3589999999999987666778999999998864
No 93
>PLN02952 phosphoinositide phospholipase C
Probab=90.11 E-value=2.9 Score=41.25 Aligned_cols=87 Identities=15% Similarity=0.038 Sum_probs=61.7
Q ss_pred CCCccCHHHHHHHHHHhhc-CCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC-C-CCCHHHHHHHHHhhc-----
Q psy11508 8 LYCSNRSKEFLQSSITDKL-MKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-E-DVTDEELADMIKEFD----- 78 (237)
Q Consensus 8 g~g~IdF~EFl~~~~~~~l-~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG-~-~~t~~el~~li~~~D----- 78 (237)
..|.++|++|. .+..... .+..+..++..+|..|-. +. .++.++|...|+... . ..+.+++..++..+-
T Consensus 13 ~~g~l~f~~f~-~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 13 DSGSYNYKMFN-LFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred cCCCcCHHHHH-HHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 45799999998 5554332 233367889999999954 55 999999999999863 2 356777777765431
Q ss_pred --CCCCCceeHHHHHHHHhc
Q psy11508 79 --LNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 79 --~d~dG~I~feEF~~~~~~ 96 (237)
..+.+.++++.|..++..
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccCcCHHHHHHHHcC
Confidence 112345899999998864
No 94
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=89.71 E-value=1.1 Score=29.70 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh
Q psy11508 11 SNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI 61 (237)
Q Consensus 11 ~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l 61 (237)
+++|.|-. .++. .++=.-...-...+|+..|+.++ ++..+|+....+.|
T Consensus 1 kmsf~Evk-~lLk-~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVK-KLLK-MMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHH-HHHH-HTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHH-HHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36778766 5553 33334455677889999999999 99999999988764
No 95
>KOG0035|consensus
Probab=89.32 E-value=1.4 Score=45.01 Aligned_cols=70 Identities=7% Similarity=-0.060 Sum_probs=58.4
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCH-----HHHHHHHHhhcCCCCCceeHHHHHHHHhccccc
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTD-----EELADMIKEFDLNQDGKKSTTLHIQGTCKSSKL 100 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~-----~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~ 100 (237)
...+++..|+.+|+... ..+.+++..+|-.+|.+..+ +++..++...|.+.-|.++|.+|...|.+....
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 34689999999999999 99999999999999988764 345667777788878999999999999775543
No 96
>KOG0042|consensus
Probab=88.97 E-value=0.68 Score=45.04 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=58.6
Q ss_pred HHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 33 ~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
..++.-|..+|.|+. +++..++..+|+..+.+.+++.+++++.+.|.+-+|.+...||.+++..
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 456677999999999 9999999999999998999999999999999999999999999998864
No 97
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=87.97 E-value=0.37 Score=34.01 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=38.4
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-------CCCceeHHHHHHH
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLN-------QDGKKSTTLHIQG 93 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d-------~dG~I~feEF~~~ 93 (237)
++.+++.++|+.+ .++. +|+.+||+..|. +++++-++..+..- ..|.++|..|++-
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 3457899999999 7778 999999998743 23345555544322 2267999999753
No 98
>PF14658 EF-hand_9: EF-hand domain
Probab=87.90 E-value=2.5 Score=29.55 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=46.5
Q ss_pred eeecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC--ccCHHHHHHHHHH
Q psy11508 3 LIALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD--FIDFDTLKNIAGV 60 (237)
Q Consensus 3 ~~~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d--~Is~~EL~~~L~~ 60 (237)
+.+....|.|.-...+ .++...-.+..++.+++.+-+.+|++|. .|+.+.+..+|+.
T Consensus 6 ~fD~~~tG~V~v~~l~-~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 6 AFDTQKTGRVPVSDLI-TYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred hcCCcCCceEeHHHHH-HHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4567778899988888 7775543436777899999999999987 9999999999875
No 99
>KOG3555|consensus
Probab=87.53 E-value=1.4 Score=40.42 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=54.0
Q ss_pred HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccc
Q psy11508 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSS 98 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~ 98 (237)
+.++..+|..+|.|.+ .++..||..+- ..-.+.-++.+|...|...||.|+-.|++..+.+.-
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 4678899999999999 99999998764 335667799999999999999999999999886543
No 100
>KOG1029|consensus
Probab=87.22 E-value=0.87 Score=45.74 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=54.5
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
...-++++.|+..|+... +++-..-+.+|-.-| ++...+..+...-|.|+||+++.+||+-.|.
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 345689999999999999 999999999988766 5566788888888999999999999986554
No 101
>KOG0046|consensus
Probab=85.45 E-value=2.9 Score=40.39 Aligned_cols=75 Identities=28% Similarity=0.457 Sum_probs=47.0
Q ss_pred CCCHHHHHHHH---HhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHH
Q psy11508 64 DVTDEELADMI---KEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVS 140 (237)
Q Consensus 64 ~~t~~el~~li---~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~ 140 (237)
.+|++|+..+- ...| +++|.|+..+....+.+ ...+.|+..+
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k---------------------------~~~~~g~~~~------- 56 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKK---------------------------AKLPLGYFVR------- 56 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHH---------------------------hcccccchhH-------
Confidence 45666665554 4457 78888888877555432 1122344332
Q ss_pred HHhhchHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHh
Q psy11508 141 KQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQCFENLRMA 179 (237)
Q Consensus 141 ~~lg~~~~~mi~~~D~DgDG~I~~~~~~f~~~~~~~r~~ 179 (237)
+.+.+++.+.++|.+|+| +|++ |...+.+|+-.
T Consensus 57 ----eei~~~l~~~~~~~~g~v-~fe~-f~~~~~~l~s~ 89 (627)
T KOG0046|consen 57 ----EEIKEILGEVGVDADGRV-EFEE-FVGIFLNLKSK 89 (627)
T ss_pred ----HHHHHHHhccCCCcCCcc-CHHH-HHHHHHhhhhh
Confidence 234568899999999999 9998 55555555543
No 102
>KOG0040|consensus
Probab=85.31 E-value=3.5 Score=44.54 Aligned_cols=84 Identities=10% Similarity=0.134 Sum_probs=59.1
Q ss_pred eeeecCCCCccCHHHHHHHHHHhhcC-CCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh--
Q psy11508 2 VLIALHLYCSNRSKEFLQSSITDKLM-KKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEF-- 77 (237)
Q Consensus 2 ~~~~~~g~g~IdF~EFl~~~~~~~l~-~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~-- 77 (237)
-+.+.+-+|.|+..+|+ ++|.++-. .-...+++..||+.+|. |. ||+..++.. ++|.+++.-.+..+
T Consensus 2303 d~vDP~r~G~Vsl~dY~-afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~-------~ltreqaefc~s~m~~ 2373 (2399)
T KOG0040|consen 2303 DLVDPNRDGYVSLQDYM-AFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ-------NLTREQAEFCMSKMKP 2373 (2399)
T ss_pred HhcCCCCcCcccHHHHH-HHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHh-------cCCHHHHHHHHHHhhh
Confidence 35578889999999999 76654322 22234589999999999 78 999998864 35667766665543
Q ss_pred --cCC----CCCceeHHHHHHHH
Q psy11508 78 --DLN----QDGKKSTTLHIQGT 94 (237)
Q Consensus 78 --D~d----~dG~I~feEF~~~~ 94 (237)
+.. ..+.++|.+|++-+
T Consensus 2374 ~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2374 YAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred hcccccCCCccccccHHHHHHHH
Confidence 332 22468899998754
No 103
>KOG2243|consensus
Probab=85.30 E-value=1.3 Score=47.30 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=51.0
Q ss_pred HHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 37 ~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
..|+.||+||. .|+..++..++..- ...|+.|++-++.-...|.+..++|++|+.-+..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 35888999999 99999999999863 3478999999999998899999999999986654
No 104
>KOG4578|consensus
Probab=83.81 E-value=0.55 Score=42.72 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=50.3
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-G~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
+.+..+..-|..+|+|.+ .|...|.+-.=+-+ ...-...-...+++..|.|+|-.|+++|+...+.-
T Consensus 330 DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 330 DEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred ChhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 334456778999999999 99999865443322 12233456788899999999999999999998754
No 105
>KOG4666|consensus
Probab=82.54 E-value=2.8 Score=38.29 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=65.4
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCC
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTP 127 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~ 127 (237)
.|...|+..-++ .+.+ +-+..++..+|.+++|.++|.|.+..+.-.-........++-.++.| +.+-
T Consensus 243 ~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f---------~v~e 309 (412)
T KOG4666|consen 243 DIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRF---------SVAE 309 (412)
T ss_pred CcceeEeeeeee---cchh-hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhc---------cccc
Confidence 555555443332 3333 45778888999999999999998776542211111111234444444 3455
Q ss_pred CcccccchhhhHHHHh-h---chHHHHHHHhccCCCCcc--hhhHH
Q psy11508 128 SGEITRLDESLVSKQV-G---NVFSQLVQQIMVDSTGRV--VEYRR 167 (237)
Q Consensus 128 ~g~I~~~~~~~~~~~l-g---~~~~~mi~~~D~DgDG~I--~~~~~ 167 (237)
+|.+...++..+.+.. | -.+..+++.++.-.||+| .+|++
T Consensus 310 Dg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~ 355 (412)
T KOG4666|consen 310 DGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNFRK 355 (412)
T ss_pred ccccchHHHHHHHHHhcCcceeeccccchhhhcccCcceeHHHHHH
Confidence 6777766666655543 2 134679999999999999 46665
No 106
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=80.71 E-value=4.8 Score=30.50 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHH
Q psy11508 7 HLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGV 60 (237)
Q Consensus 7 ~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~ 60 (237)
.++|.|+-.+-. .++.+ ..-+.+.+.+++.+-|.+++ +++.+||..+|.-
T Consensus 21 ~~~g~isg~~a~-~~f~~---S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 21 PQDGKISGDQAR-EFFMK---SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SSTTEEEHHHHH-HHHHH---TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCCeEeHHHHH-HHHHH---cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 357888888877 55543 24567899999999999999 9999999998874
No 107
>KOG3866|consensus
Probab=80.35 E-value=2.5 Score=38.36 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHh-CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCC-
Q psy11508 50 DFDTLKNIAGVI-GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTP- 127 (237)
Q Consensus 50 s~~EL~~~L~~l-G~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~- 127 (237)
|.+.|+.++... |..++.-.-+.++..+|.|+||.++-.|.-.++.+.. .+.. .+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkEL------------EKvY--------dpkNee 284 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKEL------------EKVY--------DPKNEE 284 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHH------------HHhc--------CCCCcc
Confidence 456677776654 5555555556777778899999988777766654311 0111 01111
Q ss_pred CcccccchhhhHHHHhhchHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHhhhhhccCccchhhh
Q psy11508 128 SGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRVVEYRRLFMQCFENLRMAMTLVQGGEASEKVQ 193 (237)
Q Consensus 128 ~g~I~~~~~~~~~~~lg~~~~~mi~~~D~DgDG~I~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~ 193 (237)
+......++++-+++ .+++++|+|.|--| -..+ |.... .+-++..-++.|+-+-
T Consensus 285 DDM~EmeEErlRMRE------HVMk~vDtNqDRlv-tleE-FL~~t----~~kef~~p~e~WEtl~ 338 (442)
T KOG3866|consen 285 DDMKEMEEERLRMRE------HVMKQVDTNQDRLV-TLEE-FLNDT----DNKEFNPPKEEWETLG 338 (442)
T ss_pred hHHHHHHHHHHHHHH------HHHHhcccchhhhh-hHHH-HHhhh----hhcccCCcchhhhhhc
Confidence 122222344555444 38899999999987 3344 33332 3446666678887663
No 108
>KOG0169|consensus
Probab=79.99 E-value=5 Score=40.27 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=61.4
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccc
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSS 98 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~ 98 (237)
+....+..+|+..|++++ .++..+...+++.+...+....+..++++.+..+++.+...+|..+.....
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 345678889999999999 999999999999999999999999999999989999999999998865543
No 109
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=76.52 E-value=22 Score=26.36 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=40.4
Q ss_pred HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-------CCC----CCHHHHHHHHHhhcCCCCCceeHHHHHHHHhcc
Q psy11508 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-------GED----VTDEELADMIKEFDLNQDGKKSTTLHIQGTCKS 97 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-------G~~----~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~ 97 (237)
.++++.+|+.+ .|.+ .++...|...|+.+ |.. ..+.-+...+.... ....|+-++|+..+...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 46799999999 5666 99999888777653 322 26677788887752 45679999999988764
No 110
>PF01623 Carla_C4: Carlavirus putative nucleic acid binding protein; InterPro: IPR002568 This family of carlavirus nucleic acid binding proteins includes a motif for a potential C-4 type zinc finger this has four highly conserved cysteine residues and is a conserved feature of the carlaviruses 3' terminal ORF []. These proteins may function as viral transcriptional regulators. The carlavirus family includes Garlic latent virus and Potato virus S and Potato virus M, these viruses are positive strand, ssRNA with no DNA stage.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent
Probab=68.80 E-value=2 Score=31.83 Aligned_cols=18 Identities=50% Similarity=0.822 Sum_probs=13.9
Q ss_pred chhhhccccccCCceeee
Q psy11508 189 SEKVQENLTCIPGISYYS 206 (237)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (237)
.++==+|.||.|||||=.
T Consensus 68 ~t~rCDnkTC~PGiS~n~ 85 (91)
T PF01623_consen 68 FTKRCDNKTCVPGISYNE 85 (91)
T ss_pred eCccCCCCcccCCCCcCH
Confidence 345568999999999843
No 111
>KOG2871|consensus
Probab=68.38 E-value=4.3 Score=37.69 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=49.1
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHH-HhhcCCCCCceeHHHHHHHH
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI-KEFDLNQDGKKSTTLHIQGT 94 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li-~~~D~d~dG~I~feEF~~~~ 94 (237)
.+.++++++|+.+|+.++ +|+.+-++.++..++...++.+.-.++ ..+|...-|-|=.++|+.-.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 345789999999999999 999999999999998666655544444 34677666766666665544
No 112
>KOG4347|consensus
Probab=67.92 E-value=7.5 Score=38.47 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHH
Q psy11508 12 NRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLH 90 (237)
Q Consensus 12 IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF 90 (237)
|+|..|. .++.....-.....-+..+|..+|.+++ .|+..+|...|..+-..---+.+.-+++-+|.+++ ..+-++-
T Consensus 535 i~~~~f~-~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFL-EVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHH-HHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4455555 4443332222222335667777777777 77777777776665433333445566666666666 5555544
No 113
>KOG4065|consensus
Probab=67.85 E-value=20 Score=28.05 Aligned_cols=78 Identities=10% Similarity=0.176 Sum_probs=44.8
Q ss_pred CCCHHHHHH-HHHhhcCCCCCceeHHHHHHHHhccccchhhhhhHhhhhHHHHHhhhhcCCCCCCCcccccchhhhHHHH
Q psy11508 64 DVTDEELAD-MIKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQ 142 (237)
Q Consensus 64 ~~t~~el~~-li~~~D~d~dG~I~feEF~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~d~~~~g~I~~~~~~~~~~~ 142 (237)
++|+++++- .++-.|.|+++.++=-|.++.+..... +-... ..+....+. .+
T Consensus 62 ~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~-----------------~h~~g---hep~Pl~sE-------~E 114 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHD-----------------AHDSG---HEPVPLSSE-------AE 114 (144)
T ss_pred hCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhh-----------------hhhcC---CCCCCCCCH-------HH
Confidence 466666653 466789999999887777776643211 00000 001111111 12
Q ss_pred hhchHHHHHHHhccCCCCcchhhHHHH
Q psy11508 143 VGNVFSQLVQQIMVDSTGRVVEYRRLF 169 (237)
Q Consensus 143 lg~~~~~mi~~~D~DgDG~I~~~~~~f 169 (237)
+...++.+++.-|.|+||.| +|-++.
T Consensus 115 le~~iD~vL~DdDfN~DG~I-DYgEfl 140 (144)
T KOG4065|consen 115 LERLIDAVLDDDDFNGDGVI-DYGEFL 140 (144)
T ss_pred HHHHHHHHhcccccCCCcee-eHHHHH
Confidence 22334668889999999998 777744
No 114
>KOG3866|consensus
Probab=67.84 E-value=7.3 Score=35.44 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=43.7
Q ss_pred HHHhHhcCCCC-ccCHHHHHHHHHH----h-CCCCCHHHH-----------HHHHHhhcCCCCCceeHHHHHHHHhcc
Q psy11508 37 EAFDLFAGDKD-FIDFDTLKNIAGV----I-GEDVTDEEL-----------ADMIKEFDLNQDGKKSTTLHIQGTCKS 97 (237)
Q Consensus 37 ~aF~~fD~d~d-~Is~~EL~~~L~~----l-G~~~t~~el-----------~~li~~~D~d~dG~I~feEF~~~~~~~ 97 (237)
..|.+.|.|++ +++..||..++.. + ...-.+++. ..+++.+|.|.|..|+.+||++--.+.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 34778899999 9999999988764 1 111122222 225778999999999999999876554
No 115
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=67.46 E-value=5 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=8.6
Q ss_pred ccCCCCcchhhH
Q psy11508 155 MVDSTGRVVEYR 166 (237)
Q Consensus 155 D~DgDG~I~~~~ 166 (237)
|+|+||+|+...
T Consensus 1 DvN~DG~vna~D 12 (21)
T PF00404_consen 1 DVNGDGKVNAID 12 (21)
T ss_dssp -TTSSSSSSHHH
T ss_pred CCCCCCcCCHHH
Confidence 789999995544
No 116
>KOG1707|consensus
Probab=66.95 E-value=38 Score=33.42 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=72.0
Q ss_pred HHHHHHHhHhcCCCC-ccCHHHHHHHHHH-hCCCCCHHHHHHHHHhhc---CC--CCCceeHHHHHHHHhccccchhhhh
Q psy11508 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGV-IGEDVTDEELADMIKEFD---LN--QDGKKSTTLHIQGTCKSSKLSRLAI 105 (237)
Q Consensus 33 ~~l~~aF~~fD~d~d-~Is~~EL~~~L~~-lG~~~t~~el~~li~~~D---~d--~dG~I~feEF~~~~~~~~~~~~~~~ 105 (237)
..+.++|++.|.|++ .++-.||-..=+. ++.+++..+++.+....+ .+ .+..++...|+-+-.-....-+..
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E- 273 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE- 273 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc-
Confidence 568889999999999 9999998877555 478888777766554432 21 234577777776544322111100
Q ss_pred hHhhhhHHH------HHhhhhc-CCCCCCCcccccchhhhHHHHhhchHHHHHHHhccCCCCcc--hhhHHHHHH
Q psy11508 106 NFFTWYPHF------RASLMEV-SPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGRV--VEYRRLFMQ 171 (237)
Q Consensus 106 ~~~~~~~~f------~~~~~~~-~~d~~~~g~I~~~~~~~~~~~lg~~~~~mi~~~D~DgDG~I--~~~~~~f~~ 171 (237)
.-+...++| +-..... ++-..+.|....+.... -.-+..++..+|.|+||.. .++..+|..
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~-----~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKG-----YRFLVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHH-----HHHHHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 001111111 0000001 11122333333221111 1234678999999999998 466666644
No 117
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=64.99 E-value=20 Score=24.83 Aligned_cols=31 Identities=10% Similarity=0.351 Sum_probs=28.8
Q ss_pred C-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy11508 47 D-FIDFDTLKNIAGVIGEDVTDEELADMIKEF 77 (237)
Q Consensus 47 d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~ 77 (237)
+ .|+.+-++..+..+|.++|+..++.+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 6 999999999999999999999999998765
No 118
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=63.40 E-value=3.2 Score=31.89 Aligned_cols=48 Identities=21% Similarity=0.101 Sum_probs=30.9
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHH
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKN 56 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~ 56 (237)
|.|++|.++-.|.. .+.. .+ ...+.-++..|+..|.|++ .||..|...
T Consensus 64 D~n~d~~L~~~El~-~l~~-~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 64 DRNKDGVLDRSELK-PLRR-PL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp --T-SSEE-TTTTG-GGGS-TT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cCCCCCccCHHHHH-HHHH-HH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 56788999999987 4432 22 2334457888999999999 999999865
No 119
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.25 E-value=47 Score=26.78 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=45.4
Q ss_pred HHHHhHhcCCCC-c-cCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhccc
Q psy11508 36 NEAFDLFAGDKD-F-IDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCKSS 98 (237)
Q Consensus 36 ~~aF~~fD~d~d-~-Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~~~ 98 (237)
.-+|++++.||+ . -...-++.+++. .+.++..++..++.....-+...+++-.|...+.+..
T Consensus 33 ~Llf~Vm~ADG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 33 ALLFHVMEADGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHHhcccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 367999999886 3 223345555554 4557889999999887766777899999988887544
No 120
>PRK00523 hypothetical protein; Provisional
Probab=62.26 E-value=25 Score=24.98 Aligned_cols=32 Identities=6% Similarity=0.278 Sum_probs=29.5
Q ss_pred CC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy11508 46 KD-FIDFDTLKNIAGVIGEDVTDEELADMIKEF 77 (237)
Q Consensus 46 ~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~ 77 (237)
.+ .|+.+-++..+.++|.+|++..++.+++..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 36 999999999999999999999999998876
No 121
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=61.86 E-value=15 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=22.1
Q ss_pred HHHHHHHHhHhc-CCCC--ccCHHHHHHHHHH
Q psy11508 32 EESLNEAFDLFA-GDKD--FIDFDTLKNIAGV 60 (237)
Q Consensus 32 ~~~l~~aF~~fD-~d~d--~Is~~EL~~~L~~ 60 (237)
...+..+|+.|- ++|+ +++..||+.+|..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345778888884 5566 8999999998875
No 122
>KOG1955|consensus
Probab=61.37 E-value=15 Score=35.49 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=51.9
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
+.+-+..-|+-.-.|-+ +|+-.--+..+.+-. +.-.|+..+.+..|.+.||-+++.||+..+.
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 44567778888878888 999888787777644 5667899999999999999999999999775
No 123
>KOG1265|consensus
Probab=60.48 E-value=53 Score=34.18 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh----------CCCCCHHHHHHHHHhhcCC
Q psy11508 12 NRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI----------GEDVTDEELADMIKEFDLN 80 (237)
Q Consensus 12 IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l----------G~~~t~~el~~li~~~D~d 80 (237)
++|+.|. .++.+.+. ..++.++|..+-.++. +++.++|...|+.- -.+..+..+..+++.+..+
T Consensus 205 f~~e~f~-~~l~klcp----R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~ 279 (1189)
T KOG1265|consen 205 FTLEKFY-RLLNKLCP----RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPN 279 (1189)
T ss_pred ccHHHHH-HHHHhcCC----chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCc
Confidence 5566666 55554432 3478899999999999 99999999999752 2346788899999998766
Q ss_pred C----CCceeHHHHHHHHhc
Q psy11508 81 Q----DGKKSTTLHIQGTCK 96 (237)
Q Consensus 81 ~----dG~I~feEF~~~~~~ 96 (237)
. .|.++-+-|+..+..
T Consensus 280 ~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 280 SDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhhccccchhhhHHHhhC
Confidence 4 589999999998876
No 124
>KOG3449|consensus
Probab=60.27 E-value=28 Score=26.77 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy11508 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQ 92 (237)
Q Consensus 35 l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~ 92 (237)
+..+|-+++.-|+ .-+..+++.+|.+.|....++.++.++..+. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 4556777888899 9999999999999999999999999999874 33 5666654
No 125
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=59.35 E-value=28 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC
Q psy11508 49 IDFDTLKNIAGVIGEDVTDEELADMIKEFDLN 80 (237)
Q Consensus 49 Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d 80 (237)
++.+++..+++..|.++++.++..+++.-+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 45667788888888888888888888775543
No 126
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.53 E-value=34 Score=24.14 Aligned_cols=33 Identities=6% Similarity=0.316 Sum_probs=29.4
Q ss_pred CC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q psy11508 46 KD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78 (237)
Q Consensus 46 ~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D 78 (237)
.+ .|+.+-++..+.++|.++++..++++++..-
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 35 9999999999999999999999999987653
No 127
>PRK01844 hypothetical protein; Provisional
Probab=56.00 E-value=34 Score=24.27 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=29.5
Q ss_pred CC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy11508 46 KD-FIDFDTLKNIAGVIGEDVTDEELADMIKEF 77 (237)
Q Consensus 46 ~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~ 77 (237)
.+ .|+.+-++..+.++|.++++..++.+++..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 36 999999999999999999999999998876
No 128
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=53.27 E-value=52 Score=25.37 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.6
Q ss_pred HHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy11508 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQ 92 (237)
Q Consensus 35 l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~ 92 (237)
+..+|-+.-.-|+ .+|.+++..+|+..|..+.+..+..+++.+.. .+.+|.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3445555666788 99999999999999999999999999988742 45666655
No 129
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=53.07 E-value=53 Score=27.32 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=26.1
Q ss_pred HHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCC
Q psy11508 34 SLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDV 65 (237)
Q Consensus 34 ~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~ 65 (237)
.|++=...||.|+| .|.+-|--..++++|..+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~ 40 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGI 40 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCH
Confidence 46666677899999 999999888888887654
No 130
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=50.89 E-value=16 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 65 VTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 65 ~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
+|+++.+.+..++-.|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6899999999999999999999999988664
No 131
>KOG0039|consensus
Probab=49.28 E-value=40 Score=33.72 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=61.0
Q ss_pred CCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh--------CCCCCHHHHHHHHHhhcC
Q psy11508 9 YCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI--------GEDVTDEELADMIKEFDL 79 (237)
Q Consensus 9 ~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l--------G~~~t~~el~~li~~~D~ 79 (237)
++ ++++||. ......+..++-.|..+|. ++ .++.+++..++... ..+.+.+....++...|.
T Consensus 2 ~~-~~~~~~~-------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (646)
T KOG0039|consen 2 EG-ISFQELK-------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDP 72 (646)
T ss_pred CC-cchhhhc-------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccc
Confidence 56 8899888 2334667889999999998 77 99999988887753 233455556677888888
Q ss_pred CCCCceeHHHHHHHHhccc
Q psy11508 80 NQDGKKSTTLHIQGTCKSS 98 (237)
Q Consensus 80 d~dG~I~feEF~~~~~~~~ 98 (237)
+..|.+.++++..++....
T Consensus 73 ~~~~y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 73 DHKGYITNEDLEILLLQIP 91 (646)
T ss_pred cccceeeecchhHHHHhch
Confidence 8888888888877776543
No 132
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=48.11 E-value=70 Score=24.48 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=42.5
Q ss_pred HHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy11508 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGT 94 (237)
Q Consensus 35 l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~ 94 (237)
+..+|-+.-.-|+ .+|.+++..+|+..|..+.+..+..+++.+.. .+.++.+.--
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 3445555666788 99999999999999999999988888887742 5567776643
No 133
>KOG1707|consensus
Probab=45.06 E-value=29 Score=34.28 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCC----CHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDV----TDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 33 ~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~----t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
+-+...|..||.|+| .++..||+.++...+..+ ...+.- -.+..|.++++-|+..+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHH
Confidence 567889999999999 999999999999875443 111111 123678999999987654
No 134
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=44.74 E-value=52 Score=25.15 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=37.1
Q ss_pred hHhcCCCC-ccCHHHHHHHHHHh----------CCCCCHHHHHHHHHhhcCCCCCceeHH
Q psy11508 40 DLFAGDKD-FIDFDTLKNIAGVI----------GEDVTDEELADMIKEFDLNQDGKKSTT 88 (237)
Q Consensus 40 ~~fD~d~d-~Is~~EL~~~L~~l----------G~~~t~~el~~li~~~D~d~dG~I~fe 88 (237)
++||+..+ +|+.++++.+.+.- |..+|..-+-.++-+....+...++-+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 47899999 99999999998852 666777777777777666665556544
No 135
>KOG4578|consensus
Probab=44.72 E-value=21 Score=32.81 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=35.8
Q ss_pred ecCCCCccCHHHHHH--HHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHH
Q psy11508 5 ALHLYCSNRSKEFLQ--SSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGV 60 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~--~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~ 60 (237)
+.|-++.|+-.|+.- .++.+ ......--++.|+..|.|+| +||..|+..+|..
T Consensus 343 dkN~nn~i~rrEwKpFK~~l~k---~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 343 DKNSNNDIERREWKPFKRVLLK---KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cccccCccchhhcchHHHHHHh---hccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 344456666666330 33322 23445667888999999999 9999999988764
No 136
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=44.04 E-value=38 Score=23.51 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=27.4
Q ss_pred hHhcCCCC-ccCHHHHHHHHHHh----------CCCCCHHHHHHHHHhh
Q psy11508 40 DLFAGDKD-FIDFDTLKNIAGVI----------GEDVTDEELADMIKEF 77 (237)
Q Consensus 40 ~~fD~d~d-~Is~~EL~~~L~~l----------G~~~t~~el~~li~~~ 77 (237)
++||+..+ +|+.+++..+.+.- |..+|..-+-+++-+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 47899999 99999999998852 4555655555555443
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=43.29 E-value=1.1e+02 Score=30.40 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC-C--CCCHHHHHHHHHhhcC-------CCCCceeHHHHHHHHhc
Q psy11508 29 KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-E--DVTDEELADMIKEFDL-------NQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 29 ~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG-~--~~t~~el~~li~~~D~-------d~dG~I~feEF~~~~~~ 96 (237)
..+..++..+|..|- .+. .++.++|...|+.-. . ..+.+++..++..+-. -+.+.++++.|..++..
T Consensus 25 ~~p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 446678999999994 455 999999999999864 2 3467777777765421 12356999999998765
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=42.32 E-value=97 Score=30.70 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=49.7
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhcC-CCCCceeHHHHHHHHhc
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGE--DVTDEELADMIKEFDL-NQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~--~~t~~el~~li~~~D~-d~dG~I~feEF~~~~~~ 96 (237)
...++..+|..+-. + .++.++|...|+.... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 45689999999853 5 9999999999998633 3467788888887532 24567999999998875
No 139
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=40.24 E-value=1.3e+02 Score=24.98 Aligned_cols=62 Identities=15% Similarity=-0.013 Sum_probs=42.2
Q ss_pred HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh-------CCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy11508 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-------GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGT 94 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l-------G~~~t~~el~~li~~~D~d~dG~I~feEF~~~~ 94 (237)
.+++.++|..+++.+. .++..|+..+++.- |.--+.-|+..+...+ .+.+|.+.-+.-..++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 4689999999999888 99999999999862 2222333444433332 4567888877665443
No 140
>PLN02228 Phosphoinositide phospholipase C
Probab=40.12 E-value=1.3e+02 Score=29.70 Aligned_cols=66 Identities=14% Similarity=0.270 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC-C-CCCHHHHHHHHHhhcCC----CCCceeHHHHHHHHhc
Q psy11508 29 KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-E-DVTDEELADMIKEFDLN----QDGKKSTTLHIQGTCK 96 (237)
Q Consensus 29 ~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG-~-~~t~~el~~li~~~D~d----~dG~I~feEF~~~~~~ 96 (237)
..+..++..+|..+-. + .++.++|...|+... . ..+.+.+..++..+... ..|.++.+.|..++..
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4467889999998853 4 899999999998863 2 24567788888887543 3467999999998865
No 141
>KOG3555|consensus
Probab=40.11 E-value=53 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=47.0
Q ss_pred HHHHHHHhHhcCCCC-ccCHHHHHHHHHHhC---CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG---EDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 33 ~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG---~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
..|+..|+.+=.+++ ......+..+-..+. .++-..++..||..+|.|.|+.++-.|...+..
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 468889998877776 666666655533332 245678899999999999999999999877644
No 142
>KOG0169|consensus
Probab=38.98 E-value=1.2e+02 Score=30.85 Aligned_cols=85 Identities=9% Similarity=-0.004 Sum_probs=56.8
Q ss_pred ecCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCC
Q psy11508 5 ALHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83 (237)
Q Consensus 5 ~~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG 83 (237)
+.+.+|.++|.+=+ .++.. +...-....++..|+..|..++ ++...++......++..+ ++..++..+-.+ .+
T Consensus 146 d~~~~~~~~~~~~~-~~~~~-~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~ 219 (746)
T KOG0169|consen 146 DKNKNGHMSFDEVL-DLLKQ-LNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KE 219 (746)
T ss_pred ccccccccchhhHH-HHHHH-HHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CC
Confidence 56778889998876 55443 2222344567778888888888 999998888877776554 566666655433 55
Q ss_pred ceeHHHHHHHHh
Q psy11508 84 KKSTTLHIQGTC 95 (237)
Q Consensus 84 ~I~feEF~~~~~ 95 (237)
.++.++++.++.
T Consensus 220 ~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 220 YLSTDDLLRFLE 231 (746)
T ss_pred ccCHHHHHHHHH
Confidence 666666555554
No 143
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=37.97 E-value=1.2e+02 Score=23.33 Aligned_cols=50 Identities=26% Similarity=0.326 Sum_probs=37.6
Q ss_pred HHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHH
Q psy11508 38 AFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQ 92 (237)
Q Consensus 38 aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~ 92 (237)
+|-+.---|+ .+|.+++..+|...|..+....+..+++.+.. .+.+|.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3334444577 89999999999999999988888888888742 45566654
No 144
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=37.68 E-value=87 Score=19.83 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q psy11508 51 FDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQG 93 (237)
Q Consensus 51 ~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~ 93 (237)
.+|...+|.++| .++.++...+..+.. ...++.++.++.
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 357888899999 567888899888864 334666776654
No 145
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=36.92 E-value=45 Score=23.37 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=40.5
Q ss_pred CCCccCHHHHHHHHHHhhcCC-CCcHHHHHHHHhHhcCC----CC-ccCHHHHHHHHHHh
Q psy11508 8 LYCSNRSKEFLQSSITDKLMK-KDPEESLNEAFDLFAGD----KD-FIDFDTLKNIAGVI 61 (237)
Q Consensus 8 g~g~IdF~EFl~~~~~~~l~~-~~~~~~l~~aF~~fD~d----~d-~Is~~EL~~~L~~l 61 (237)
+.+.++.++|. ..+...... ....+.+..++..|.++ .. .++.+.|...|.+-
T Consensus 12 ~~~~mt~~~f~-~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 12 DKEYMTAEEFR-RFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp TSSSEEHHHHH-HHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CCCcCCHHHHH-HHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46789999999 888765554 34678889999988654 35 89999999888763
No 146
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=34.03 E-value=45 Score=24.49 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=32.6
Q ss_pred cCCCCccCHHHHHHHHHHhhcCCCCcHHHHHHHHhH--hcCCCC--ccCH-HHHHHHHHHhC
Q psy11508 6 LHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDL--FAGDKD--FIDF-DTLKNIAGVIG 62 (237)
Q Consensus 6 ~~g~g~IdF~EFl~~~~~~~l~~~~~~~~l~~aF~~--fD~d~d--~Is~-~EL~~~L~~lG 62 (237)
++..-.++|++|. ..+....+.... ..|.+ .|.+|| .|+. +||..++..++
T Consensus 21 l~~~~~~s~~~L~-~~V~~~f~~l~~-----~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 21 IDEDVSTSYEYLV-EKVAAVFPSLRG-----KNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred ecCCCCcCHHHHH-HHHHHHccccCC-----CcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 3445567899999 766655432111 23443 399999 7775 48888888765
No 147
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=33.61 E-value=1.9e+02 Score=21.16 Aligned_cols=47 Identities=6% Similarity=-0.084 Sum_probs=33.6
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGT 94 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~ 94 (237)
.||..||....+..|.++|+++++.++..+-.+.-.-.+-++=..++
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~ll 60 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLL 60 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 68999999999999999999999998887654433333333333333
No 148
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=30.88 E-value=1.6e+02 Score=21.22 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=32.2
Q ss_pred ccCHHHHHHHHHHhC--CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 48 FIDFDTLKNIAGVIG--EDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG--~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
.++..|...+-+.+. +.+++.+...++..+........++.+|.+.+..
T Consensus 15 ~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 15 EYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred CCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 666666555543321 2467788888887776655566788888887654
No 149
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=30.20 E-value=1.5e+02 Score=18.76 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=29.2
Q ss_pred cHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy11508 31 PEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~ 76 (237)
....|..+|.. + +.+..++..+...+| ++...|..+|..
T Consensus 11 ~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 11 QLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 34567777775 6 888888888888887 667788777754
No 150
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=29.53 E-value=78 Score=21.70 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQ 81 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~ 81 (237)
.++..+|...|..-|..++++.+...++.++.++
T Consensus 13 P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 13 PLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 7899999999998899999999999999888654
No 151
>PLN02223 phosphoinositide phospholipase C
Probab=28.96 E-value=2.2e+02 Score=27.92 Aligned_cols=67 Identities=4% Similarity=-0.148 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHh----C-CCCCHHHHHHHHHhhcCC--------CCCceeHHHHHHHH
Q psy11508 29 KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI----G-EDVTDEELADMIKEFDLN--------QDGKKSTTLHIQGT 94 (237)
Q Consensus 29 ~~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~l----G-~~~t~~el~~li~~~D~d--------~dG~I~feEF~~~~ 94 (237)
..+.+.++.+|..+- .+. .++.+.|...|.-| | ...+.++.+.++..+-.. ..+.++.+.|..++
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 446678999999994 556 89999999988333 3 346777888887765322 23569999999988
Q ss_pred hc
Q psy11508 95 CK 96 (237)
Q Consensus 95 ~~ 96 (237)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 75
No 152
>KOG4070|consensus
Probab=28.41 E-value=99 Score=25.33 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=42.5
Q ss_pred cHHHHHHHHhHhcCCCC-c-----cCHHHHHHHHHHhC----CCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 31 PEESLNEAFDLFAGDKD-F-----IDFDTLKNIAGVIG----EDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d-~-----Is~~EL~~~L~~lG----~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
....+.+.|+.|-.-|+ . ++-..+..+++.++ ..+|.-.+.-.+..+-...-+.++|++|...+..
T Consensus 10 ~~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~e 85 (180)
T KOG4070|consen 10 DMAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEE 85 (180)
T ss_pred chhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHH
Confidence 34456777777755554 4 55556677777764 4455555555666666566678999999666543
No 153
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=28.12 E-value=85 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-CCCceeHHHHHHHH
Q psy11508 51 FDTLKNIAGVIGEDVTDEELADMIKEFDLN-QDGKKSTTLHIQGT 94 (237)
Q Consensus 51 ~~EL~~~L~~lG~~~t~~el~~li~~~D~d-~dG~I~feEF~~~~ 94 (237)
.++|..+|. |.+.+.+.+...+..++.. --+.++-+||++++
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 455666553 7778888888888887553 33567788887653
No 154
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=26.98 E-value=2.9e+02 Score=21.18 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=38.8
Q ss_pred HhHhcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q psy11508 39 FDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGT 94 (237)
Q Consensus 39 F~~fD~d~d~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~ 94 (237)
+-++..-|..|+.+.|..++...|..+.+..++.++..+.. ++.+|.+.-.
T Consensus 7 ~llL~~agkei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~~~ 57 (109)
T COG2058 7 YLLLHLAGKEITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIKNA 57 (109)
T ss_pred HHHHHHccCcCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHHHh
Confidence 33444433389999999999999999999999999988752 4677776543
No 155
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=25.58 E-value=1.3e+02 Score=20.26 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=20.7
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEF 77 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~ 77 (237)
.+|.+||...+..++..++.+++-.+...+
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 567777777777777777777766665543
No 156
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.91 E-value=2.9e+02 Score=20.38 Aligned_cols=41 Identities=24% Similarity=0.521 Sum_probs=32.7
Q ss_pred cHHHHHHHHhHhcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy11508 31 PEESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKE 76 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d~Is~~EL~~~L~~lG~~~t~~el~~li~~ 76 (237)
+.+.++.+|..+-. .++..+.+.+++.+| +++.+|+.+-..
T Consensus 2 ~~~~l~~~f~~i~~---~V~~~~Wk~laR~LG--Lse~~I~~i~~~ 42 (96)
T cd08315 2 PQETLRRSFDHFIK---EVPFDSWNRLMRQLG--LSENEIDVAKAN 42 (96)
T ss_pred cHhHHHHHHHHHHH---HCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 45678888887632 678899999999999 788898888765
No 157
>KOG0998|consensus
Probab=24.64 E-value=29 Score=35.83 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=54.7
Q ss_pred CcHHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHhc
Q psy11508 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96 (237)
Q Consensus 30 ~~~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~~ 96 (237)
.....+.++|...|.+.+ +|+..+....+..-| ++...+.......|..+.|.+++++|.-.+..
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 445678889999999999 999999999888755 66678888888899999999999999776543
No 158
>KOG1029|consensus
Probab=24.59 E-value=2.5e+02 Score=29.04 Aligned_cols=61 Identities=21% Similarity=0.151 Sum_probs=45.7
Q ss_pred HHHHHHHhHhc--CCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 33 ESLNEAFDLFA--GDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 33 ~~l~~aF~~fD--~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
++..+-|..|+ +-+. +|+-..-+.++-.-|. ...-+..+....|.|+||+++..||--.|.
T Consensus 13 ~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~L--P~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 13 EERQKHDAQFGQLKPGQGFITGDQARNFFLQSGL--PTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHHHHHHhccCCCCCccchHhhhhhHHhcCC--ChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 34455555565 3556 9999999988877674 455678888889999999999999955443
No 159
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.83 E-value=67 Score=27.07 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHHHHHHHhHhcCCCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy11508 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIK 75 (237)
Q Consensus 32 ~~~l~~aF~~fD~d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~ 75 (237)
.+.++++|..||.+.- ..+.+++..+|...|+--....|+..+.
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~ 98 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATIN 98 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 4679999999999998 9999999999988876555555555544
No 160
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=22.35 E-value=1.5e+02 Score=21.38 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=24.3
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q psy11508 49 IDFDTLKNIAGVIGEDVTDEELADMIKEFD 78 (237)
Q Consensus 49 Is~~EL~~~L~~lG~~~t~~el~~li~~~D 78 (237)
|+.++++.+.+-....++++++..+...++
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~ 30 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLD 30 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 577888888888888899999888876653
No 161
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=22.12 E-value=1.6e+02 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.5
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~D 78 (237)
.|+.++++.+.+.....++++++..+...++
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~ 32 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLN 32 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3788899999888889999999888876653
No 162
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=21.81 E-value=2.9e+02 Score=21.61 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=33.2
Q ss_pred cHHHHHHHHhHhcCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhhc
Q psy11508 31 PEESLNEAFDLFAGDKDFIDFDTLKNIAGVI-GEDVTDEELADMIKEFD 78 (237)
Q Consensus 31 ~~~~l~~aF~~fD~d~d~Is~~EL~~~L~~l-G~~~t~~el~~li~~~D 78 (237)
-.+++..+|++|-.+ .|+.+.+..++.+. |..+|..++.-+...+=
T Consensus 35 f~~Kl~~Il~mFl~~--eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 35 FLDKLIKILKMFLND--EIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 346788888888644 68888888887776 56777777777766553
No 163
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=21.28 E-value=2e+02 Score=21.81 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHHHh
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTC 95 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~~~ 95 (237)
.|+.+++..+|...|.++++..+..+++.+. ..+.++.+.-..
T Consensus 16 ~~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 16 ELTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 6999999999999999999999999888873 246677776543
No 164
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.17 E-value=1.9e+02 Score=20.25 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=22.5
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q psy11508 48 FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78 (237)
Q Consensus 48 ~Is~~EL~~~L~~lG~~~t~~el~~li~~~D 78 (237)
.-+.+||...|...|+.+|+..+-..++++.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 4578899999999999999999988888763
No 165
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=20.81 E-value=1.7e+02 Score=22.27 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q psy11508 51 FDTLKNIAGVIGEDVTDEELADMIK 75 (237)
Q Consensus 51 ~~EL~~~L~~lG~~~t~~el~~li~ 75 (237)
.+|++.++-.+...+++++++.+++
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd 105 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3444444444444444444444443
No 166
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=20.76 E-value=2.4e+02 Score=21.26 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCC-ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCceeHHHHHHH
Q psy11508 45 DKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTLHIQG 93 (237)
Q Consensus 45 d~d-~Is~~EL~~~L~~lG~~~t~~el~~li~~~D~d~dG~I~feEF~~~ 93 (237)
+.. .|+.+++..+|+..|..+....+..+.+.+. ..+.++++.-
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~elIa~ 57 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIKDLLSN 57 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHhhc
Confidence 345 8999999999999999888877777777663 1556666644
Done!