RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11508
(237 letters)
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 76.0 bits (188), Expect = 9e-18
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
+FL +T K+ +KD +E + +AF LF D D I F LK +A +GE++TDEEL +
Sbjct: 63 DFLTV-MTQKMSEKDTKEEILKAFKLF--DDDETGKISFKNLKRVAKELGENLTDEELQE 119
Query: 73 MIKEFDLNQDGK 84
MI E D + DG+
Sbjct: 120 MIDEADRDGDGE 131
Score = 47.1 bits (113), Expect = 3e-07
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ EAFDLF D ID LK +G + EE+ MI E D GK
Sbjct: 8 IREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGK 58
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 76.0 bits (188), Expect = 1e-17
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
+F + +K++K+DP + + AF LF D D I L+ +A +GE +TDEEL
Sbjct: 80 DFYIV-MGEKILKRDPLDEIKRAFQLF--DDDHTGKISIKNLRRVAKELGETLTDEELRA 136
Query: 73 MIKEFDLNQDGK 84
MI+EFDL+ DG+
Sbjct: 137 MIEEFDLDGDGE 148
Score = 50.6 bits (122), Expect = 3e-08
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 11 SNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEE 69
S + +L+++ +E + EAF LF + D F+D+ LK +G ++ E
Sbjct: 2 SKNRSSLQSGPLNSELLEEQKQE-IYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKRE 60
Query: 70 LADMIKEFDLNQDGK 84
+ D+I E+D
Sbjct: 61 ILDLIDEYDSEGRHL 75
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 76.1 bits (188), Expect = 1e-17
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL +T K+ ++D E + +AF LF D D I L+ +A +GE++T+EEL +
Sbjct: 85 EFLTM-MTAKMGERDSREEILKAFRLF--DDDNSGTITIKDLRRVAKELGENLTEEELQE 141
Query: 73 MIKEFDLNQDGK 84
MI E D N D +
Sbjct: 142 MIAEADRNDDNE 153
Score = 46.8 bits (112), Expect = 8e-07
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ EAFDLF D ID LK +G + EE+ MI E D + G
Sbjct: 30 IREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGT 80
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 72.6 bits (179), Expect = 3e-16
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 68 EFLTM-MARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 124
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 125 MIREADIDGDGQ 136
Score = 45.6 bits (109), Expect = 2e-06
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EAF LF D D I L + +G++ T+ EL DMI E D + +G
Sbjct: 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 71.7 bits (177), Expect = 4e-16
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + K+ ++D EE L EAF +F D+D I L+++ +GE +TD+E+ +
Sbjct: 67 EFLSL-MARKMKEQDSEEELIEAFKVF--DRDGNGLISAAELRHVMTNLGEKLTDDEVDE 123
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG
Sbjct: 124 MIREADIDGDGH 135
Score = 44.8 bits (107), Expect = 3e-06
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EAF LF D D I L + +G++ T+ EL DMI E D + +G
Sbjct: 12 FKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 62
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 71.4 bits (176), Expect = 7e-16
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 16 EFLQ---SSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEE 69
F + +++ + ++ L EAF L+ DK+ +I D ++ I + E ++ E+
Sbjct: 71 SFKIIGARFLGEEVNPEQMQQELREAFRLY--DKEGNGYISTDVMREILAELDETLSSED 128
Query: 70 LADMIKEFDLNQDGK 84
L MI E D + G
Sbjct: 129 LDAMIDEIDADGSGT 143
Score = 44.9 bits (107), Expect = 3e-06
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 35 LNEAFDLF-AGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
L AF F + + D + I V+G T + +I EFD +G
Sbjct: 15 LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGD 66
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 70.2 bits (173), Expect = 1e-15
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
FL + +KL DPE+ + AF F D++ FI D L+ + +G+ TDEE+ +
Sbjct: 60 MFL-TMFGEKLNGTDPEDVIRNAFACF--DEEASGFIHEDHLRELLTTMGDRFTDEEVDE 116
Query: 73 MIKEFDLNQDGK 84
M +E +++ G
Sbjct: 117 MYREAPIDKKGN 128
Score = 40.9 bits (97), Expect = 6e-05
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78
EAF++ ++D FID + L ++ +G++ TDE L M+ E
Sbjct: 9 FKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP 53
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 70.7 bits (174), Expect = 2e-15
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
FL +KL DPE+ + AF + D D I L+ + G T EE+ +
Sbjct: 79 VFLTM-FGEKLKGADPEDVIMGAFKVL--DPDGKGSIKKSFLEELLTTGGGRFTPEEIKN 135
Query: 73 MIKEFDLNQDGK 84
M F + G
Sbjct: 136 MWAAFPPDVAGN 147
Score = 35.6 bits (83), Expect = 0.005
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 19 QSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-EDVTDEELADMIKE 76
S++ + + E+ EAF + + D ID D L+ +G +V +EEL MIKE
Sbjct: 12 SSNVFSMFDETEIED-FKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 68.5 bits (168), Expect = 2e-15
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
E L + D EE + EAF + DKD +I L+++ +GE +TDEE+ +
Sbjct: 14 ENLY--FQSLMKDTDSEEEIREAFRVE--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 69
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 70 MIREADIDGDGQ 81
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 69.7 bits (171), Expect = 2e-15
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-EDVTDEELADM 73
+ L + +K+ ++ L + F L A + I ++L+ +G++G E ++ E+ M
Sbjct: 24 DMLPV-MAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGM 82
Query: 74 IKEFDLNQDGK 84
++E DL+ DG
Sbjct: 83 VREGDLDGDGA 93
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 73.4 bits (180), Expect = 2e-15
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + K+ D EE + EAF +F DKD +I L+++ +GE +TDEE+ +
Sbjct: 369 EFLTM-MARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRHVMTNLGEKLTDEEVDE 425
Query: 73 MIKEFDLNQDGK 84
MI+E D++ DG+
Sbjct: 426 MIREADIDGDGQ 437
Score = 48.3 bits (115), Expect = 8e-07
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 27 MKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ ++ EAF LF D D I L + +G++ T+ EL DMI E D + +G
Sbjct: 306 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 364
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 69.1 bits (170), Expect = 6e-15
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 16 EFLQSSITDKLMK----KDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDE 68
EFL + + MK EE L F +F DK+ FID + L I GE VT+E
Sbjct: 77 EFLV--MMVRQMKEDAKGKSEEELANCFRIF--DKNADGFIDIEELGEILRATGEHVTEE 132
Query: 69 ELADMIKEFDLNQDGK 84
++ D++K+ D N DG+
Sbjct: 133 DIEDLMKDSDKNNDGR 148
Score = 47.6 bits (114), Expect = 4e-07
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 20 SSITDKLMKKDPE------ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELAD 72
+S+TD+ + AFD+F D I L + ++G++ T EEL
Sbjct: 1 ASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDA 60
Query: 73 MIKEFDLNQDGK 84
+I+E D + G
Sbjct: 61 IIEEVDEDGSGT 72
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 69.7 bits (171), Expect = 7e-15
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIK 75
FL D++ D E+ + AF+LF +TLK GE + +E+ +
Sbjct: 110 MFLTI-FGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQALS 168
Query: 76 EFDLNQDGK 84
E ++ +G
Sbjct: 169 EAPIDGNGL 177
Score = 42.3 bits (100), Expect = 3e-05
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 11 SNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEE 69
R + S++ + +E EAF L DKD FI + ++ +G T++E
Sbjct: 36 QKRRAQRSGSNVFAMFTQHQVQE-FKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQE 94
Query: 70 LADMIKEFD 78
L M+ E
Sbjct: 95 LDSMVAEAP 103
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 65.7 bits (161), Expect = 2e-14
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 27 MKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
M D EE L EAF +F DKD +I L+++ +GE +TDEE+ MIKE DL+ DG
Sbjct: 3 MDTDAEEELKEAFKVF--DKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDG 60
Query: 84 K 84
+
Sbjct: 61 Q 61
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 67.1 bits (165), Expect = 2e-14
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL + ++ + E+ L +AF F D + +I L++ +G+ + E A+
Sbjct: 63 EFLSM-MGRRMKQTTSEDILRQAFRTF--DPEGTGYIPKAALQDALLNLGDRLKPHEFAE 119
Query: 73 MIKEFDLNQDGK 84
+ + G+
Sbjct: 120 FLGITETE-KGQ 130
Score = 46.7 bits (112), Expect = 5e-07
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EAF+LF ++ FI + L+ + G V +M E D +GK
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGK 58
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 67.1 bits (165), Expect = 2e-14
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EFL ++ +L D E+ L EAF +F DK+ I LK++ IGE +TD E+ +
Sbjct: 68 EFLAL-MSRQLKCNDSEQELLEAFKVF--DKNGDGLISAAELKHVLTSIGEKLTDAEVDE 124
Query: 73 MIKEFDLNQDGK 84
M++E + G+
Sbjct: 125 MLREVS-DGSGE 135
Score = 44.0 bits (105), Expect = 4e-06
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
EAF LF D I L + +G ++ E+AD++ E D++ +
Sbjct: 15 EAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHA 63
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 68.0 bits (167), Expect = 2e-14
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ + T L K + EE+L AF F DKD +I D ++ G + D + D
Sbjct: 67 EFI--AATVHLNKLEREENLVSAFSYF--DKDGSGYITLDEIQQACKDFG--LDDIHIDD 120
Query: 73 MIKEFDLNQDGK 84
MIKE D + DG+
Sbjct: 121 MIKEIDQDNDGQ 132
Score = 44.9 bits (107), Expect = 5e-06
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
L E F + D I FD LK+ +G ++ + E+ D++ D+++ G
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 62
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 67.5 bits (166), Expect = 2e-14
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ + T L K + E+ L AF F DKD +I D L+ G V D + +
Sbjct: 84 EFI--AATLHLNKIEREDHLFAAFTYF--DKDGSGYITPDELQQACEEFG--VEDVRIEE 137
Query: 73 MIKEFDLNQDGK 84
++++ D + DG+
Sbjct: 138 LMRDVDQDNDGR 149
Score = 44.8 bits (107), Expect = 3e-06
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 12 NRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEEL 70
N+ K+ I + L +++ L E F++ DK I F+ LK +G ++ + E+
Sbjct: 7 NKFKKMALRVIAESLSEEEIAG-LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEI 65
Query: 71 ADMIKEFDLNQDGK 84
D+++ D++ G
Sbjct: 66 LDLMQAADVDNSGT 79
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 66.8 bits (164), Expect = 3e-14
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
FL +DKL D EE++ AF +F D+ ++ + +K++ +G++ +E+
Sbjct: 71 MFLSI-FSDKLSGTDSEETIRNAFAMF--DEQETKKLNIEYIKDLLENMGDNFNKDEMRM 127
Query: 73 MIKEFDLNQDGK 84
KE + GK
Sbjct: 128 TFKEAPVE-GGK 138
Score = 43.3 bits (103), Expect = 1e-05
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78
+ EAF + D+D F+ + +K I+ +G D+EL M+KE
Sbjct: 20 MKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP 64
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 66.4 bits (163), Expect = 4e-14
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
FL +K+ DPE++L AF +F D+D FI D LK++ +G++ + EE+ +
Sbjct: 69 AFLTL-FGEKVSGTDPEDALRNAFSMF--DEDGQGFIPEDYLKDLLENMGDNFSKEEIKN 125
Query: 73 MIKEFDLNQDGK 84
+ K+ L + +
Sbjct: 126 VWKDAPLK-NKQ 136
Score = 42.9 bits (102), Expect = 1e-05
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78
L EAF + D+D FI + LK++ +G D+EL M+KE
Sbjct: 18 LKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP 62
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 66.4 bits (163), Expect = 5e-14
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Query: 16 EFLQSSITDKLMK----KDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDE 68
EFL + + MK EE L++ F +F DK+ +ID + LK + GE +T++
Sbjct: 76 EFLV--MMVRSMKDDSKGKSEEELSDLFRMF--DKNADGYIDLEELKIMLQATGETITED 131
Query: 69 ELADMIKEFDLNQDGK 84
++ +++K+ D N DG+
Sbjct: 132 DIEELMKDGDKNNDGR 147
Score = 47.2 bits (113), Expect = 5e-07
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 18 LQSSITDKLMKKDPEESLNEAFDLFAGDKD----FIDFDTLKNIAGVIGEDVTDEELADM 73
+ + ++L ++ E AFD+F I L + ++G++ T EEL +M
Sbjct: 4 IYKAAVEQLTEEQKNE-FKAAFDIF--VLGAEDGSISTKELGKVMRMLGQNPTPEELQEM 60
Query: 74 IKEFDLNQDGK 84
I E D + G
Sbjct: 61 IDEVDEDGSGT 71
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 62.9 bits (154), Expect = 1e-13
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 29 KDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ E L AF F D+D I D L+ +G+ + EEL MI+E D++QDG+
Sbjct: 2 RAGLEDLQVAFRAF--DQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGR 58
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 65.7 bits (161), Expect = 2e-13
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNI--AGVIGEDVTDEEL 70
+FL + T +E F F D D I + LK I I + D+ +
Sbjct: 114 DFL--AATIDKQTYLKKEVCLIPFKFF--DIDGNGKISVEELKRIFGRDDIENPLIDKAI 169
Query: 71 ADMIKEFDLNQDGK 84
+++E DLN DG+
Sbjct: 170 DSLLQEVDLNGDGE 183
Score = 43.3 bits (103), Expect = 1e-05
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 12 NRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDE 68
N K+ + I L + L F D D + + + IG
Sbjct: 37 NELKKIALTIIAKHLCDVEINN-LRNIFIAL--DVDNSGTLSSQEILDGLKKIGYQKIPP 93
Query: 69 ELADMIKEFDLNQDGK 84
++ ++++ D N G+
Sbjct: 94 DIHQVLRDIDSNASGQ 109
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 64.1 bits (157), Expect = 3e-13
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 16 EFLQSSITDKLMKK--DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEEL 70
EFL + LM EAF F D++ FI L+++ +GE ++DE++
Sbjct: 67 EFLP--AYEGLMDCEQGTFADYMEAFKTF--DREGQGFISGAELRHVLTALGERLSDEDV 122
Query: 71 ADMIKEFDLNQDG 83
++IK DL +D
Sbjct: 123 DEIIKLTDLQEDL 135
Score = 36.8 bits (86), Expect = 0.002
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 35 LNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
L + F+LF +D L ++ +G + +E++ + +
Sbjct: 11 LKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEKS 62
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 63.7 bits (156), Expect = 3e-13
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 28 KKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + + +AF DK+ I L+ + +G+ +T E+ +++KE ++ DG
Sbjct: 71 PTEQSKEMLDAFRAL--DKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGA 128
Score = 41.7 bits (99), Expect = 3e-05
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
+ + E F +F D D + + L + +G++ T+ EL + + + +
Sbjct: 4 ADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFD 56
Score = 30.2 bits (69), Expect = 0.31
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 45 DKDFIDFDTLKNIAGVIGEDVTD--EELADMIKEFDLNQDGK 84
+ D T K + + T+ +E+ D + D +G
Sbjct: 51 NAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGT 92
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 63.7 bits (156), Expect = 4e-13
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 16 EFLQ---SSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIA-GVIGEDVTDE 68
+F++ + + + L +AF F D + I L+ ++G V
Sbjct: 68 DFVELMGPKLLAETADMIGVKELRDAFREF--DTNGDGEISTSELREAMRALLGHQVGHR 125
Query: 69 ELADMIKEFDLNQDGK 84
++ ++I++ DLN DG+
Sbjct: 126 DIEEIIRDVDLNGDGR 141
Score = 47.1 bits (113), Expect = 4e-07
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 22 ITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLN 80
+ L ++ EE L EAF F DKD +I+ L N +G T+ EL ++ ++ ++N
Sbjct: 1 MDRSLRPEEIEE-LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMN 59
Query: 81 QDGK 84
G
Sbjct: 60 LGGH 63
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 61.4 bits (150), Expect = 6e-13
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 27 MKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGED-VTDEELADMIKEFDLNQD 82
+++D EE + AF +F D + IDFD K I +GE+ +TD E+ + +KE D + +
Sbjct: 2 VRQDDEEEILRAFKVF--DANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGN 59
Query: 83 GK 84
G
Sbjct: 60 GV 61
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 63.8 bits (156), Expect = 9e-13
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ ++ E L AF F D D I + L + G +V DE
Sbjct: 108 EFV--TVCMDKQLLLSRERLLAAFQQF--DSDGSGKITNEELGRLFG--VTEVDDETWHQ 161
Query: 73 MIKEFDLNQDGK 84
+++E D N DG+
Sbjct: 162 VLQECDKNNDGE 173
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 16/89 (17%)
Query: 10 CSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLK----------- 55
S + + + KL + + L + F D + +D L
Sbjct: 17 SSQKLAQAAMLFMGSKLTTLEETKELTQIFRQL--DNNGDGQLDRKELIEGYRKLMQWKG 74
Query: 56 NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + + E+ +++ D +++G
Sbjct: 75 DTVSDLDSSQIEAEVDHILQSVDFDRNGY 103
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 61.5 bits (150), Expect = 3e-12
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 16 EFLQSSITDKLMKKDP-----EESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTD 67
+ I + D E +AF +F DK+ + L+ + +GE +TD
Sbjct: 62 QITGL-IEVNEKELDATTKAKTEDFVKAFQVF--DKESTGKVSVGDLRYMLTGLGEKLTD 118
Query: 68 EELADMIKEFDLNQDGK 84
E+ +++K +++ +G+
Sbjct: 119 AEVDELLKGVEVDSNGE 135
Score = 40.3 bits (95), Expect = 9e-05
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIK-EFDLNQDGK 84
+ F LF I D+L + IG + T++ + D+I + L
Sbjct: 8 DIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASS 57
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 60.3 bits (147), Expect = 4e-12
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIA---GVIGEDVTDE 68
K+F +K + + F D D FI+ + LK + G D+TD
Sbjct: 28 KKFFALVG----LKAMSANDVKKVFKAI--DADASGFIEEEELKFVLKSFAADGRDLTDA 81
Query: 69 ELADMIKEFDLNQDGK 84
E +K D + DGK
Sbjct: 82 ETKAFLKAADKDGDGK 97
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 59.9 bits (146), Expect = 4e-12
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIA---GVIGEDVTDE 68
KEF + + + +AF + D+D FI+ D LK +TD
Sbjct: 27 KEFFAKV----GLASKSLDDVKKAFYVI--DQDKSGFIEEDELKLFLQNFSPSARALTDA 80
Query: 69 ELADMIKEFDLNQDGK 84
E + + D + DG
Sbjct: 81 ETKAFLADGDKDGDGM 96
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 61.1 bits (149), Expect = 5e-12
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 16 EFLQS-SITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELA 71
E L + EAF F D++ I ++N+ ++GE +T+++
Sbjct: 67 EILPIYEEMSSKDTGTAADEFMEAFKTF--DREGQGLISSAEIRNVLKMLGERITEDQCN 124
Query: 72 DMIKEFDLNQDG 83
D+ D+ +D
Sbjct: 125 DIFTFCDIREDI 136
Score = 34.9 bits (81), Expect = 0.008
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 35 LNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ E FDLF +D + ++ +G + T+ ++ +
Sbjct: 11 VREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKA 62
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 59.1 bits (144), Expect = 9e-12
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIA---GVIGEDVTDE 68
K F +K + + E F++ DKD FI+ + LK + G D+ D
Sbjct: 27 KRFFHLVG----LKGKTDAQVKEVFEIL--DKDQSGFIEEEELKGVLKGFSAHGRDLNDT 80
Query: 69 ELADMIKEFDLNQDGK 84
E ++ D + DGK
Sbjct: 81 ETKALLAAGDSDHDGK 96
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 60.5 bits (147), Expect = 1e-11
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 16 EFLQSSITDKLMKKDPEES------LNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVT 66
E + TD L+K EE +D D D ++ K +G D+T
Sbjct: 80 EAAVN-ATDSLLKMKGEEKAMAVIQSLIMYDCI--DTDKDGYVSLPEFKAFLQAVGPDLT 136
Query: 67 DEELADMIKEFDLNQDGK 84
D++ D N++G+
Sbjct: 137 DDKAITCFNTLDFNKNGQ 154
Score = 32.0 bits (73), Expect = 0.089
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 14/62 (22%)
Query: 35 LNEAFDLFAGDKD---FIDFDTLKNIAGVIGE---------DVTDEELADMIKEFDLNQD 82
+ D FI + + IA I + + T +E + + L
Sbjct: 16 MKTRMQRV--DVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPG 73
Query: 83 GK 84
+
Sbjct: 74 VR 75
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 60.5 bits (147), Expect = 1e-11
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 30 DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
E + FD+F DKD I D K + G + E+ + DL+ G
Sbjct: 110 LIREWGDAVFDIF--DKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGD 165
Score = 38.6 bits (90), Expect = 7e-04
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 14 SKEFLQSSITDKLMKKDPEE--SLNEAFDLFAGDKD-FIDFDTLKNIAGVI-----GEDV 65
S ++ TD +P FD + + I D + + A
Sbjct: 2 SSKYAVKLKTDFD---NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATP 58
Query: 66 TDEELADMIKEFDLNQDG 83
+ + E G
Sbjct: 59 EQTKRHQVCVEAFFRGCG 76
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 59.4 bits (144), Expect = 4e-11
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 28 KKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ FD+ DKD I D K G + E+ + + D+++ G+
Sbjct: 104 PTLIRIWGDALFDIV--DKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQ 161
Score = 37.1 bits (86), Expect = 0.002
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 8/61 (13%)
Query: 31 PEE--SLNEAFDLFAGDKD-FIDFDTLKNIAGVI-----GEDVTDEELADMIKEFDLNQD 82
P F+ + + I D + A I G + E
Sbjct: 12 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGA 71
Query: 83 G 83
G
Sbjct: 72 G 72
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 56.0 bits (136), Expect = 4e-11
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
F+ F +KD + D + +A T E++ +E D++ +G
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNG 52
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 58.0 bits (141), Expect = 5e-11
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
++L+ ++ + KD E L + F F D + ++ +KNI G+ +TD+E D
Sbjct: 68 QYLEY-LSICVHDKDNVEELIKMFAHF--DNNCTGYLTKSQMKNILTTWGDALTDQEAID 124
Query: 73 MIKEFDLNQDGK 84
+ F +
Sbjct: 125 ALNAFS--SEDN 134
Score = 39.9 bits (94), Expect = 2e-04
Identities = 6/62 (9%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 18 LQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
++S + +++ +E + I D A +G + + + +
Sbjct: 1 MESVADIQQLEEKVDE-SDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKEL 59
Query: 77 FD 78
+
Sbjct: 60 YG 61
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 58.4 bits (142), Expect = 7e-11
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVT-----D 67
EF+ +++ K+ ++ + AF +F D D I L +I +
Sbjct: 108 EFIAAALD---RKQLSKKLIYCAFRVF--DVDNDGEITTAELAHILYNGNKKGNITQRDV 162
Query: 68 EELADMIKEFDLNQDGK 84
+ MI++ D N DGK
Sbjct: 163 NRVKRMIRDVDKNNDGK 179
Score = 39.5 bits (93), Expect = 3e-04
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 12 NRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDE 68
+ ++ + I + D E+ L F + D+D +I + LK G +
Sbjct: 32 LKFQKLAMTIIAQQSNDYDVEK-LKSTFLVL--DEDGKGYITKEQLKKGLEKDGLKLP-Y 87
Query: 69 ELADMIKEFDLNQDGK 84
++ + D + GK
Sbjct: 88 NFDLLLDQIDSDGSGK 103
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 56.5 bits (137), Expect = 7e-11
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIA---GVIGEDVTDE 68
K F + + + +AF + D+D FI+ D LK +TD
Sbjct: 28 KAFFAKVG----LTAKSADDIKKAFFVI--DQDKSGFIEEDELKLFLQVFSAGARALTDA 81
Query: 69 ELADMIKEFDLNQDGK 84
E +K D + DG
Sbjct: 82 ETKAFLKAGDSDGDGA 97
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 56.4 bits (137), Expect = 2e-10
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 16 EFLQSSITDKLMKKDP--EESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEEL 70
+FLQ + P E + F +F DKD I L+ + +GE +++EE+
Sbjct: 58 QFLQV-LNRPNGFDMPGDPEEFVKGFQVF--DKDATGMIGVGELRYVLTSLGEKLSNEEM 114
Query: 71 ADMIKEFDLNQDGK 84
+++K + DG
Sbjct: 115 DELLKGVPVK-DGM 127
Score = 33.2 bits (77), Expect = 0.029
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKE 76
+AF LF I ++ ++ G++ T E+ ++
Sbjct: 9 QAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIEST 49
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 56.4 bits (137), Expect = 2e-10
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 16 EFLQ-SSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELA 71
FL K + E E F +F DK+ + L+++ +GE +T+EE+
Sbjct: 69 TFLPMLQAVAKNRGQGTYEDYLEGFRVF--DKEGNGKVMGAELRHVLTTLGEKMTEEEVE 126
Query: 72 DMIKEFDLNQDGK 84
++ + +G
Sbjct: 127 TVLAG-HEDSNGC 138
Score = 43.4 bits (103), Expect = 8e-06
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKS 86
EAF+LF D I + ++ +G++ T+ E+ ++ ++ +
Sbjct: 12 FKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRR 64
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 56.0 bits (136), Expect = 3e-10
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 16 EFLQSSITDKLMKKDP--EESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEEL 70
EFL + KD E E +F DK+ + L+++ +GE +T+EE+
Sbjct: 67 EFLPM-LQAAANNKDQGTFEDFVEGLRVF--DKEGNGTVMGAELRHVLATLGEKMTEEEV 123
Query: 71 ADMIKEFDLNQDGK 84
+++K + + +G
Sbjct: 124 EELMKGQE-DSNGC 136
Score = 42.1 bits (100), Expect = 2e-05
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 37 EAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKS 86
EAF LF D I + +IA +G++ T+ E+ ++ + +
Sbjct: 12 EAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 62
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 56.5 bits (137), Expect = 3e-10
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ K L AF+ DKD +I + ++ + + + ++ +
Sbjct: 94 EFMAGCYR---WKNIESTFLKAAFNKI--DKDEDGYISKSDIVSLVH--DKVLDNNDIDN 146
Query: 73 MIKEFDLNQDGKKSTTLHIQ 92
+ G + +
Sbjct: 147 FFLSVHSIKKGIPREHIINK 166
Score = 38.4 bits (90), Expect = 7e-04
Identities = 7/75 (9%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 12 NRSKEFLQSSITDKLMKKDPE-ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEE 69
+ + + + + +L + + +NE F + + + + + + +
Sbjct: 17 SNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIY--TVLASVGIKKWD 74
Query: 70 LADMIKEFDLNQDGK 84
+ +++ D+N G
Sbjct: 75 INRILQALDINDRGN 89
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand,
acetylation, calcium, metal binding protein; 1.95A
{Gallus gallus} PDB: 2kqy_A
Length = 109
Score = 54.6 bits (132), Expect = 4e-10
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIA---GVIGEDVTDE 68
K F + + + + + F + D+D FI+ + L+ +T
Sbjct: 28 KSFFSTV----GLSSKTPDQIKKVFGIL--DQDKSGFIEEEELQLFLKNFSSSARVLTSA 81
Query: 69 ELADMIKEFDLNQDGK 84
E + D + DGK
Sbjct: 82 ETKAFLAAGDTDGDGK 97
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 53.0 bits (128), Expect = 7e-10
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 32 EESLNEAFDLFA---GDKDFIDFDTLKNIAGVIGEDVTD--EELADMIKEFDLNQDGK 84
E + AF++FA GD + I + LK + +G + L +MI+E D N DG+
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 53.0 bits (128), Expect = 9e-10
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 27 MKKDPEESLNEAFDLFAGDKD---FIDFDTLKNI------AGVIGEDVTDEELADMIKEF 77
M + L AF D + ++ L+ + +D E A +IK
Sbjct: 1 MACKVKAELEAAFKKL--DANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMA 58
Query: 78 DLNQDGK 84
D N DGK
Sbjct: 59 DKNSDGK 65
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 54.1 bits (131), Expect = 1e-09
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 16 EFLQSSITDKLMKK-DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELA 71
EF + + + D + L + L D D + + + + G E++A
Sbjct: 57 EFAKFYGSIQGQDLSDDKIGLKVLYKLM--DVDGDGKLTKEEVTSFFKKHG----IEKVA 110
Query: 72 DMIKEFDLNQDGK 84
+ + + D N DG
Sbjct: 111 EQVMKADANGDGY 123
Score = 44.1 bits (105), Expect = 4e-06
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 35 LNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
F D + + ++ +K ++ L + K D + +G+
Sbjct: 2 AEALFKEI--DVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGE 52
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 55.4 bits (134), Expect = 1e-09
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGV-------IGEDV 65
EFL M + E + AF D+ + D L+ + GE
Sbjct: 94 EFL--RALRPPMSQAREAVIAAAFAKL--DRSGDGVVTVDDLRGVYSGRAHPKVRSGEWT 149
Query: 66 TDEELADMIKEFDLN-QDGK 84
DE L + FD + +DG+
Sbjct: 150 EDEVLRRFLDNFDSSEKDGQ 169
Score = 46.2 bits (110), Expect = 2e-06
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 19 QSSITDKLMKK----DPEE--SLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEE 69
+ +KL + L F D+D +D D + +G + E
Sbjct: 17 VDATMEKLRAQCLSRGASGIQGLARFFRQL--DRDGSRSLDADEFRQGLAKLGLVLDQAE 74
Query: 70 LADMIKEFDLNQDGK 84
+ +++D N G
Sbjct: 75 AEGVCRKWDRNGSGT 89
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 53.0 bits (128), Expect = 1e-09
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 24 DKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLN 80
+ ++ AFD+F D D I L + ++G++ T EEL +I+E D +
Sbjct: 11 RAFLSEEMIAEFKAAFDMF--DADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDED 68
Query: 81 QDGK 84
G
Sbjct: 69 GSGT 72
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 53.1 bits (128), Expect = 1e-09
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 12 NRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDE 68
N+ +D+ + E E + F D + ID +LK + +G T
Sbjct: 12 NKQFLDDPKYSSDEDLPSKLEG-FKEKYMEF--DLNGNGDIDIMSLKRMLEKLGVPKTHL 68
Query: 69 ELADMIKEFDLNQDGK 84
EL +I E
Sbjct: 69 ELKKLIGEVSSGSGET 84
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 54.9 bits (132), Expect = 2e-09
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIG-EDVTDEELA 71
EFL L L FD D +D + K + E+ A
Sbjct: 115 EFL--EFRLMLCYIYDFFELTVMFDEI--DASGNMLVDEEEFKRAVPKLEAWGAKVEDPA 170
Query: 72 DMIKEFDLNQDGK 84
+ KE D N G
Sbjct: 171 ALFKELDKNGTGS 183
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 51.5 bits (124), Expect = 5e-09
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNI---AGVIGEDVTDE 68
K+F Q S M K L E F + D D FI+ D LK +T
Sbjct: 27 KKFFQISG----MSKKSSSQLKEIFRIL--DNDQSGFIEEDELKYFLQRFESGARVLTAS 80
Query: 69 ELADMIKEFDLNQDGK 84
E + D + DGK
Sbjct: 81 ETKTFLAAADHDGDGK 96
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 50.3 bits (121), Expect = 7e-09
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 32 EESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + F F D + I L + +G + +E+ M+ E D + DG
Sbjct: 2 ADDMERIFKRF--DTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGF 54
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 52.7 bits (127), Expect = 7e-09
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELA 71
EF L S+ E F D +D + ++ G V+++
Sbjct: 83 DEFKD------LHHF--ILSMREGFRKR--DSSGDGRLDSNEVRAALLSSGYQVSEQTFQ 132
Query: 72 DMIKEFDLNQDGK 84
++++FD + G
Sbjct: 133 ALMRKFDRQRRGS 145
Score = 46.5 bits (111), Expect = 1e-06
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + L E F D I L G + ++ +D N G+
Sbjct: 24 NDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGE 79
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 51.8 bits (125), Expect = 9e-09
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAG-VIGEDVTDEEL 70
KEF++ ++ +K D E+ L AF ++ D D +I L + ++G ++ D +L
Sbjct: 58 KEFIEG-VSQFSVKGDKEQKLRFAFRIY--DMDKDGYISNGELFQVLKMMVGNNLKDTQL 114
Query: 71 A----DMIKEFDLNQDGK 84
I D + DG+
Sbjct: 115 QQIVDKTIINADKDGDGR 132
Score = 32.6 bits (75), Expect = 0.049
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 33 ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ L + F D + + ++ E + + +I FD + +G+
Sbjct: 6 KRLGKRFKKLDLDNSGSLSVEEFMSL----PELQQNPLVQRVIDIFDTDGNGE 54
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 50.4 bits (121), Expect = 2e-08
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIA---GVIGEDVTDEEL 70
K+F Q +KK + + + F + DK FI+ D L +I D++ +E
Sbjct: 27 KKFFQMV----GLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKET 82
Query: 71 ADMIKEFDLNQDGK 84
++ D + DGK
Sbjct: 83 KTLMAAGDKDGDGK 96
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 50.0 bits (120), Expect = 2e-08
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNI---AGVIGEDVTDE 68
++F Q+S L K + + + F D D ++D D LK ++T+
Sbjct: 27 QKFFQTS---GLSKMSASQ-VKDIFRFI--DNDQSGYLDGDELKYFLQKFQSDARELTES 80
Query: 69 ELADMIKEFDLNQDGK 84
E ++ D + DGK
Sbjct: 81 ETKSLMDAADNDGDGK 96
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 51.1 bits (122), Expect = 2e-08
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 15 KEFLQSSITDKLMKKDPE-ESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELAD 72
K+FL + E+ + F + + ID +LK + +G T EL
Sbjct: 29 KQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKR 88
Query: 73 MIKEFDLNQDGK 84
+I+E +
Sbjct: 89 LIREVSSGSEET 100
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 12/77 (15%)
Query: 16 EFLQSSITDKLMKKDPEE-------SLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTD 67
EF+ K ++ P+ L+ A + D D + G V +
Sbjct: 76 EFVT--GAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFG--VPE 131
Query: 68 EELADMIKEFDLNQDGK 84
+ D + DGK
Sbjct: 132 DLARQAAAALDTDGDGK 148
Score = 33.6 bits (77), Expect = 0.023
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 16/71 (22%)
Query: 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGE---------------DVTDEELADM 73
+ E + F F D + ID A + + +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 74 IKEFDLNQDGK 84
D + D +
Sbjct: 61 AGIADRDGDQR 71
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 52.2 bits (125), Expect = 2e-08
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 22 ITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVT--------DEEL 70
+ + + E + + + D D FI+ + LKN + E E
Sbjct: 92 LLFRCQQLKSCEEFMKTWRKY--DTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYT 149
Query: 71 ADMIKEFDLNQDGK 84
M+K FD N DGK
Sbjct: 150 DLMLKLFDSNNDGK 163
Score = 47.6 bits (113), Expect = 8e-07
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 27 MKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEF-----D 78
K + N+AF+L+ D+D +ID + L + + E E + I +
Sbjct: 185 GIKMCGKEFNKAFELY--DQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMA 242
Query: 79 LNQDGK 84
L+ GK
Sbjct: 243 LSDGGK 248
Score = 39.1 bits (91), Expect = 5e-04
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 28 KKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTD------EELADMIKEFDLN 80
E + F D +++ L+N+ + + E+ + ++
Sbjct: 11 SLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQR 70
Query: 81 QDGK 84
DGK
Sbjct: 71 DDGK 74
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 48.3 bits (116), Expect = 4e-08
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ EAFDLF +K ID+ LK +G DV E+ +++ E+D +G
Sbjct: 9 IKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGY 59
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 49.5 bits (118), Expect = 7e-08
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 29 KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + E + F + + ID +LK + +G T E+ MI E
Sbjct: 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDT 102
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 47.6 bits (114), Expect = 9e-08
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 22 ITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFD 78
+ + +D + F F D + I L + +G VT +E+ M+ E D
Sbjct: 1 MAAEDTPQDIAD-RERIFKRF--DTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEID 56
Query: 79 LNQDGK 84
+ DG
Sbjct: 57 TDGDGF 62
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 46.7 bits (112), Expect = 2e-07
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
+ + ++L +++ L E F + D D I FD LK+ +G ++ + E+ D
Sbjct: 7 DDDDKHMAERLSEEEIGG-LKELFKMI--DTDNSGTITFDELKDGLKRVGSELMESEIKD 63
Query: 73 MIKEFDLNQDGK 84
++ D+++ G
Sbjct: 64 LMDAADIDKSGT 75
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 47.1 bits (112), Expect = 2e-07
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 15 KEFLQSSITDKLMKKDPEE--SLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEE 69
I +L K ++ + F+ F D I + + I + +TDE+
Sbjct: 4 MATADRDILARLHKAVTSHYHAITQEFENF--DTMKTNTISREEFRAICNRRVQILTDEQ 61
Query: 70 LADMIKEFDLNQDGK 84
+ E +N G+
Sbjct: 62 FDRLWNEMPVNAKGR 76
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 46.5 bits (111), Expect = 2e-07
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
K++ + ++ EAF LF D D + + L + +G + T +++++++K++D + G
Sbjct: 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSG 65
Query: 84 K 84
K
Sbjct: 66 K 66
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 48.3 bits (115), Expect = 4e-07
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 24 DKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLN 80
+ N +D+ D D +D D LK + V E ++ D +
Sbjct: 119 RRGEPSLIALLSNSYYDVL--DDDGDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTD 174
Query: 81 QDGK 84
+ GK
Sbjct: 175 KSGK 178
Score = 30.6 bits (69), Expect = 0.34
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDV--TDEELADM-------IKEFDLNQDGK 84
L + FD F D D ++ D + + + V TDE++ M +
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNG 97
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 47.4 bits (113), Expect = 4e-07
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 16 EFL---QSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELA 71
F+ + + + K E L F ++D I D G++G +
Sbjct: 74 TFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAP 131
Query: 72 DMIKEFDLNQDGK 84
D N DG
Sbjct: 132 ASFDAIDTNNDGL 144
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 47.9 bits (114), Expect = 5e-07
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-----EDVTDE 68
EF+ + + +M++ E+ L F L+ D + ID + L ++ + + ++ E
Sbjct: 77 LEFIAA--VNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPE 134
Query: 69 ELAD-MIKEFDLNQDGK 84
E + + + D+N DG+
Sbjct: 135 EFINLVFHKIDINNDGE 151
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 49 IDFDTLKNIAGVIGEDVTDEELAD-MIKEFDLNQDG 83
K + G+ G + + D + FD N+DG
Sbjct: 37 QTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDG 72
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 47.1 bits (112), Expect = 7e-07
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 16 EFLQSSITDKLMKKDPEES--------LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVT 66
+F+ +T+ L+ + E S + + + D I+ D +G ++
Sbjct: 79 QFI--RVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALG--MS 134
Query: 67 DEELADMIKEFDLNQDGK 84
E A+ + D N +G+
Sbjct: 135 KAEAAEAFNQVDTNGNGE 152
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 47.0 bits (111), Expect = 1e-06
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 14 SKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIA--------GVIGED 64
+E I + D + + + D +I LKN I +
Sbjct: 85 PQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPN 144
Query: 65 VTDEELADMIKEFDLNQDGKKS 86
DE M+K FD N+DG+
Sbjct: 145 KLDEYTDAMMKIFDKNKDGRLD 166
Score = 44.3 bits (104), Expect = 1e-05
Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 13 RSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFD----TLKNIAGVIGEDVTD 67
+ FL D + + + + F + + ++ +K++ ++ ++
Sbjct: 176 LQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISG 235
Query: 68 EELAD----MIKEFDLNQDGK 84
+L ++ D+N+DGK
Sbjct: 236 GDLDKFRECLLTHCDMNKDGK 256
Score = 28.9 bits (64), Expect = 1.2
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 16/75 (21%)
Query: 23 TDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNI----------AGVIGEDVTDEE 69
D + + F D D +I+ L + I ++ +
Sbjct: 2 DSAFANLDAAG-FLQIWQHF--DADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQI 58
Query: 70 LADMIKEFDLNQDGK 84
+ +D DG+
Sbjct: 59 KKSFMSAYDATFDGR 73
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 47.4 bits (113), Expect = 1e-06
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ S+I ++ E + AF +F DKD I L + + EEL
Sbjct: 402 EFIASAIDRTILLS--RERMERAFKMF--DKDGSGKISTKELFKLFSQADSSIQMEELES 457
Query: 73 MIKEFDLNQDGK 84
+I++ D N+DG+
Sbjct: 458 IIEQVDNNKDGE 469
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 11 SNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLK-------------- 55
+ + + KL D + L E F + D +D D L
Sbjct: 309 EKKLAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDS 368
Query: 56 NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
N ++++ ++ D++ G
Sbjct: 369 NSLIQNEGSTIEDQIDSLMPLLDMDGSGS 397
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 47.1 bits (112), Expect = 2e-06
Identities = 4/55 (7%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG-EDVTDEELADMIKEFDLNQDGK 84
L + DK + + ++ + + ++ D++
Sbjct: 252 LLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKS 306
Score = 45.2 bits (107), Expect = 6e-06
Identities = 6/58 (10%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 30 DPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ +L F D + + + +G D + + D ++
Sbjct: 185 NDLAALVADFRKI--DTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDD 239
Score = 39.8 bits (93), Expect = 4e-04
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 25 KLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
++ ++ L + F A F LK + + + + L + + + G
Sbjct: 114 PMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKG 173
Query: 84 K 84
+
Sbjct: 174 R 174
Score = 27.5 bits (61), Expect = 4.5
Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 13 RSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELAD 72
R++ +++ D +K SL + + D ++ L+ +++E+
Sbjct: 73 RAEREREAARGDAAAEKQRLASLLKDLE-----DDASGYNRLR----PSKPMLSEEDTNI 123
Query: 73 ---MIKEFDLNQDGK 84
+ ++ GK
Sbjct: 124 LRQLFLSSAVSGSGK 138
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 43.5 bits (103), Expect = 3e-06
Identities = 9/82 (10%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 6 LHLYCSNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIG 62
+H + + S ++ L F D + ++ + + + +
Sbjct: 1 MHHHHHHSSGRENLYFQGADGDGEELAR-LRSVFAAC--DANRSGRLEREEFRALCTELR 57
Query: 63 EDVTDEELADMIKEFDLNQDGK 84
V + + + D ++DG
Sbjct: 58 --VRPADAEAVFQRLDADRDGA 77
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 44.5 bits (106), Expect = 4e-06
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELA 71
EF + K F + D+D ID + LK G ++D+
Sbjct: 64 SEFTG------VWKY--ITDWQNVFRTY--DRDNSGMIDKNELKQALSGFGYRLSDQFHD 113
Query: 72 DMIKEFDLNQDGK 84
+I++FD G+
Sbjct: 114 ILIRKFDRQGRGQ 126
Score = 40.3 bits (95), Expect = 1e-04
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 2/55 (3%)
Query: 32 EESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGED-VTDEELADMIKEFDLNQDGK 84
+ L F D+ I L+ + +I FD
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAG 60
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 44.4 bits (105), Expect = 7e-06
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI------GEDVTD 67
E++ + ++K ++ L F L+ D + ID L NI I E +T
Sbjct: 72 MEYVAA--LSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTA 129
Query: 68 EELAD-MIKEFDLNQDGK 84
EE + + + D+N DG+
Sbjct: 130 EEFTNMVFDKIDINGDGE 147
Score = 28.6 bits (64), Expect = 1.2
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 49 IDFDTLKNIAGVIGEDVTDEELAD-MIKEFDLNQDG 83
+ K G+ + + + M + FD N+DG
Sbjct: 32 LTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDG 67
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 44.4 bits (105), Expect = 7e-06
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
E ++S + + + + +N FD+ D ID + G + +
Sbjct: 91 AECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYG--IPKSDCDAA 148
Query: 74 IKEFDLNQDGK 84
Sbjct: 149 FDTLSDGGKTM 159
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 43.6 bits (103), Expect = 1e-05
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 20/88 (22%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI------------ 61
E++ + + +++ E L F ++ D++ ID L +I I
Sbjct: 79 LEYVAA--LNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVE 136
Query: 62 ----GEDVTDEELAD-MIKEFDLNQDGK 84
G+ +T EE+ D + D N DG+
Sbjct: 137 AEQQGKLLTPEEVVDRIFLLVDENGDGQ 164
Score = 33.2 bits (76), Expect = 0.042
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 32 EESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDG 83
L E + F ++ + K V + + + M + FD N D
Sbjct: 21 AAQLQEWYKKFL-EECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDN 74
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 42.4 bits (100), Expect = 4e-05
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GEDVTDEELAD----MIKEFDLNQDG 83
L+ AF L+ D+D I + + ++ G VT+E+L + ++E D + DG
Sbjct: 111 SRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDG 170
Query: 84 K 84
Sbjct: 171 A 171
Score = 30.1 bits (68), Expect = 0.47
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 12 NRSKEFLQSSITDKLMKK---DPEE--SLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDV 65
+RS D + ++ L+ F +K ++ L+ I G
Sbjct: 3 SRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI----GALA 58
Query: 66 TDEELADMIKEFDLNQDGK 84
+ +I+ F + +
Sbjct: 59 VNPLGDRIIESFFPDGSQR 77
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 43.2 bits (102), Expect = 4e-05
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ + +++ EE L AF+LF D D I + L N+ G ++++ D
Sbjct: 420 EFISVCMDKQILFS--EERLRRAFNLF--DTDKSGKITKEELANLFG--LTSISEKTWND 473
Query: 73 MIKEFDLNQDGK 84
++ E D N+D
Sbjct: 474 VLGEADQNKDNM 485
Score = 31.6 bits (72), Expect = 0.23
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 11 SNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGE------ 63
S + + I KL + + L + F + D +D L V+
Sbjct: 333 SQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELG 392
Query: 64 --DVTDEELADMIKEFDLNQDGK 84
+EE+ +++KE D +++G
Sbjct: 393 ELKNVEEEVDNILKEVDFDKNGY 415
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 41.8 bits (98), Expect = 4e-05
Identities = 4/71 (5%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
++ + + + + + + F D +D + +N + ++ +
Sbjct: 87 EKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--LQCADVPAV 144
Query: 74 IKEFDLNQDGK 84
Sbjct: 145 YNVITDGGKVT 155
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 42.8 bits (101), Expect = 5e-05
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ ++ K + E L AF +F D D I L I G DV E
Sbjct: 403 EFVTVAMDRKTLLS--RERLERAFRMF--DSDNSGKISSTELATIFG--VSDVDSETWKS 456
Query: 73 MIKEFDLNQDGK 84
++ E D N DG+
Sbjct: 457 VLSEVDKNNDGE 468
Score = 30.0 bits (68), Expect = 0.64
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 11 SNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKN-----------IA 58
+ + + + KL +D + L F + D +D L A
Sbjct: 313 TQKLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDA 372
Query: 59 GVIGEDVTDEELADMIKEFDLNQDGK 84
++ + E+ ++ D +++G
Sbjct: 373 SMLDASAVEHEVDQVLDAVDFDKNGY 398
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 42.4 bits (100), Expect = 8e-05
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD---FIDFDTLKNIAGVIGEDVTDEELAD 72
EF+ ++ K + ++ L AF F D+D I D L ++ G + + + +
Sbjct: 411 EFVTVAMDRKSLLS--KDKLESAFQKF--DQDGNGKISVDELASVFG--LDHLESKTWKE 464
Query: 73 MIKEFDLNQDGK 84
MI D N DG
Sbjct: 465 MISGIDSNNDGD 476
Score = 28.5 bits (64), Expect = 2.3
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 11 SNRSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLK--------NIAGVI 61
S + + + KL ++ + L + F + D +D L V
Sbjct: 324 SQKLAQAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVF 383
Query: 62 GEDVTDEELADMIKEFDLNQDGK 84
+ E+ ++ D +++G
Sbjct: 384 DLPQIESEVDAILGAADFDRNGY 406
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 38.3 bits (90), Expect = 1e-04
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 35 LNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
F + D + ++ +K ++ L + K D + +G+
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGE 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 1e-04
Identities = 50/270 (18%), Positives = 84/270 (31%), Gaps = 90/270 (33%)
Query: 1 MVLIALHLYCS--------NRSKEFLQS----SITDKLMKKDPEESLNEAFDLFAGDKDF 48
M + LY + NR+ + SI D ++ +P F G+K
Sbjct: 1631 M---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILD-IVINNP----VNLTIHFGGEKGK 1682
Query: 49 IDFDTLKNIAGVIGEDVTDEELADMIKEF-DLNQDGKKSTTLHIQGTCKSSKLSRLAINF 107
+N + +I E + D +L K F ++N+ T +G +++ ++ A+
Sbjct: 1683 ---RIRENYSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQFTQPAL-- 1736
Query: 108 FTW-YPHFRASLME--VSPPSTP----S-GEITRLDESLVSKQVGNVFSQLVQQIMVDST 159
F L + P S GE +L S + +V S ++S
Sbjct: 1737 TLMEKAAFED-LKSKGLIPADATFAGHSLGEYA----ALAS--LADVMS-------IESL 1782
Query: 160 GRVVEYRRLFMQCF--------ENLRMA------MTLVQGGEASEKVQE----------- 194
VV YR + MQ N M + EA + V E
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 195 --NLTCIPG----ISYYSDFSFAIGTSRAI 218
N + G RA+
Sbjct: 1843 IVNYNV-ENQQYVAA---------GDLRAL 1862
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 40.5 bits (95), Expect = 2e-04
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 30 DPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-GEDVTDEELAD----MIKEFDLNQDG 83
L+ AF L+ DKD I D L + ++ G +++DE+L I+E D + D
Sbjct: 110 SRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDS 169
Query: 84 KKSTTLHIQGTCKSSKLSRLAINFFTW----YPHF 114
S T ++ K +++I F H
Sbjct: 170 AISFTEFVKVLEKVDVEQKMSIRFLHKLAAALEHH 204
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 39.4 bits (92), Expect = 3e-04
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNI-----AGVIGEDVTDE 68
++FL ++ P+ + AF +F D D ++ + L + ++
Sbjct: 81 EDFLDL-LSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSAS 139
Query: 69 ELAD----MIKEFDLNQDGK 84
E+ +++E D+++DG
Sbjct: 140 EMKQLIDNILEESDIDRDGT 159
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 38.2 bits (89), Expect = 0.001
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNI--------AGVIGEDV 65
EF++S + E + AF L+ + FI+ + LK + V+ ED+
Sbjct: 94 GEFVRS-LGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDM 152
Query: 66 TDEELADMIKEFDLNQDGK 84
+ + + D DGK
Sbjct: 153 IEVMVDKAFVQADRKNDGK 171
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 27 MKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ D + + F D+ ++ + L G ++ + M++ FD + +G
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGH 103
Score = 29.0 bits (65), Expect = 0.96
Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
EF+ + K E F + A + ++ + +G + ++ + +
Sbjct: 107 YEFMA------MYKF--MELAYNLFVMNARARSGTLEPHEILPALQQLGFYI-NQRTSLL 157
Query: 74 IKEFDLNQDGK 84
+
Sbjct: 158 LHRLFARGMAF 168
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 37.5 bits (87), Expect = 0.002
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FID----FDTLKNIAGVIGEDVTDEE 69
+EF ++ ++ ++ ++ +F L+ + FI+ + G ++ D
Sbjct: 105 EEFARA-LSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTV 163
Query: 70 LAD----MIKEFDLNQDGK 84
+ D +E D DGK
Sbjct: 164 IEDIIDKTFEEADTKHDGK 182
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 37.1 bits (86), Expect = 0.002
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNI-----AGVIGEDVTDE 68
++FL ++ P+ + AF +F D D ++ + L + ++
Sbjct: 112 EDFLDL-LSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSAS 170
Query: 69 ELAD----MIKEFDLNQDGK 84
E+ +++E D+++DG
Sbjct: 171 EMKQLIDNILEESDIDRDGT 190
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 36.1 bits (83), Expect = 0.003
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNI--------AGVIGEDV 65
E L+ I + P+E F + D + +D L +
Sbjct: 50 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLM 109
Query: 66 TDEELADMIKEF----DLNQDGK 84
+++EL ++I D N DG
Sbjct: 110 SEDELINIIDGVLRDDDKNNDGY 132
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 36.0 bits (83), Expect = 0.005
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIG----------- 62
+EF+ + + E+ L AF ++ D + +I + I I
Sbjct: 83 REFIIA--LSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPE 140
Query: 63 EDVTDEELAD-MIKEFDLNQDGK 84
++ T E+ + + ++ D N+DGK
Sbjct: 141 DESTPEKRTEKIFRQMDTNRDGK 163
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 35.6 bits (82), Expect = 0.006
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 26 LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGE-----------DVTDEELADM 73
L++ E L F+L+ +KD +I+ + + +I I + + T + D+
Sbjct: 85 LLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDV 144
Query: 74 I-KEFDLNQDGK 84
++ D N+DG
Sbjct: 145 FFQKMDKNKDGI 156
Score = 29.0 bits (65), Expect = 0.98
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 14 SKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELAD 72
++E + D + F+ F + + F+ ++ E+L
Sbjct: 37 NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRW 96
Query: 73 MIKEFDLNQDGK 84
+D+N+DG
Sbjct: 97 TFNLYDINKDGY 108
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 35.6 bits (82), Expect = 0.007
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 26 LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGE-----------DVTDEELAD- 72
+ EE L+ AF+L+ + D +I FD + I + + + T E
Sbjct: 92 TSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKK 151
Query: 73 MIKEFDLNQDGK 84
+ K D N+DG
Sbjct: 152 IFKLMDKNEDGY 163
Score = 29.1 bits (65), Expect = 0.96
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 14 SKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELAD 72
++E PE+ N F +F D + FI F+ + +E+L+
Sbjct: 44 AREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSW 103
Query: 73 MIKEFDLNQDGK 84
+ +DLN DG
Sbjct: 104 AFELYDLNHDGY 115
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 34.0 bits (78), Expect = 0.009
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 33 ESLNEAFDLFAGDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
E++ F FAGDK ++ + L+ G + + ++K+ D +DGK
Sbjct: 9 ETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGK 65
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 35.2 bits (81), Expect = 0.010
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 26 LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-----------GEDVTDEELAD- 72
+ + + L AF L+ D + I +D + I I ++ T E+ +
Sbjct: 92 TSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNK 151
Query: 73 MIKEFDLNQDGK 84
+ D N+DG+
Sbjct: 152 IFNMMDKNKDGQ 163
Score = 28.2 bits (63), Expect = 1.6
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 14 SKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELAD 72
+K Q DP F++F DK+ +IDF V +++L
Sbjct: 44 NKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIW 103
Query: 73 MIKEFDLNQDGK 84
+ +DL+ +G
Sbjct: 104 AFQLYDLDNNGL 115
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 34.9 bits (80), Expect = 0.012
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FID----FDTLKNIAGVIGE------ 63
++F++ L++ +E LN AF+L+ +KD +I D +K I ++G+
Sbjct: 122 EDFIKG--LSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVL 179
Query: 64 -DVTDEELAD-MIKEFDLNQDGK 84
+ + + ++ D N+DG
Sbjct: 180 KEDAPRQHVETFFQKMDKNKDGV 202
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 35.4 bits (82), Expect = 0.014
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 16 EFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMI 74
F ++ + K ++ GD+ I + + G T +
Sbjct: 366 RFYFENLWSRNSKPV-HTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSE---E 421
Query: 75 KEFDLNQDGK 84
+DGK
Sbjct: 422 TRVWHRRDGK 431
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 35.0 bits (80), Expect = 0.015
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FID----FDTLKNIAGVIGEDVTD-- 67
++F+ L++ E L AF+L+ +KD I +K+I ++G
Sbjct: 149 EDFVVG--LSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPIL 206
Query: 68 -----EELAD-MIKEFDLNQDGK 84
E + ++ D NQDG
Sbjct: 207 REDAPLEHVERFFQKMDRNQDGV 229
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 34.2 bits (78), Expect = 0.021
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 13 RSKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FID----FDTLKNIAGVIGEDVTD 67
+ ++F+ + L++ E L F+L+ +KD +I+ D +K I ++G+
Sbjct: 107 KFEDFVTA--LSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYP 164
Query: 68 -------EELADMI-KEFDLNQDGK 84
+ D+ ++ D N+DG
Sbjct: 165 VLKEDTPRQHVDVFFQKMDKNKDGI 189
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 33.3 bits (76), Expect = 0.034
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 26 LMKKDPEESLNEAFDLFAGDKD-FID----FDTLKNIAGVIG-------EDVTDEELAD- 72
+ +E L AF L+ D D +I D + I ++G E+ T E+ D
Sbjct: 92 TSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDR 151
Query: 73 MIKEFDLNQDGK 84
+ D N DGK
Sbjct: 152 IFAMMDKNADGK 163
Score = 27.5 bits (61), Expect = 3.2
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 14 SKEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELAD 72
Q DP + F++F +KD I+F V DE+L
Sbjct: 44 DAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRW 103
Query: 73 MIKEFDLNQDGK 84
K +DL+ DG
Sbjct: 104 AFKLYDLDNDGY 115
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 33.2 bits (76), Expect = 0.037
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
EF + L + F F D+ +D L+ +G ++ + + +
Sbjct: 93 NEFKE------LWAV--LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSI 144
Query: 74 IKEFDLN 80
K + N
Sbjct: 145 AKRYSTN 151
Score = 30.1 bits (68), Expect = 0.42
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 32 EESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVT-----DEELADMIKEFDLNQDGK 84
++ L F AG ID D L+ G E M+ D + G
Sbjct: 32 QDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGT 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.044
Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 74/192 (38%)
Query: 16 EFLQSSITDKLMKKDPEESL----N-------EAFDL---------FAGDKDFIDFDTLK 55
+Q+ + L K E L N AF+L F DF+ T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 56 NIAGVIGEDV-TDEELADM------IKEFDLNQDGKKSTTLHIQGTCKSSKLSRLAINFF 108
+I+ T +E+ + + DL ++ + + S ++ +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL------SIIAESIRDGL 341
Query: 109 -TW--YPHFR----ASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIMVDSTGR 161
TW + H +++E S + L+ +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESS--------LNVLEPA------------------------ 369
Query: 162 VVEYRRLFMQCF 173
EYR++F +
Sbjct: 370 --EYRKMFDRLS 379
Score = 31.0 bits (69), Expect = 0.37
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 25/151 (16%)
Query: 40 DLFAGDKDFIDF-DTLKNIAGVIGEDVTDEELADMIKEFD-LNQDGKKSTTLHIQGTCKS 97
D F + D D D K+I ++ EE+ +I D ++ + TL +
Sbjct: 27 DAFVDNFDCKDVQDMPKSI-------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 98 SKL--SRLAINFFTWYPHFRASLMEVSPPSTPSGEITRLDESLVSKQVGNVFSQLVQQIM 155
K L IN Y + + PS +TR+ + + Q+ +
Sbjct: 80 QKFVEEVLRIN----YKFLMSPIKTE--QRQPSM-MTRMYIEQRDRLYNDN--QVFAKYN 130
Query: 156 VDSTGRVVEYRRLFMQCFENLRMAMTL-VQG 185
V R+ Y +L Q LR A + + G
Sbjct: 131 VS---RLQPYLKL-RQALLELRPAKNVLIDG 157
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 32.7 bits (75), Expect = 0.055
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
F + L + E F D ++ L+ G++G ++ + L +
Sbjct: 60 NAFKE------LWAA--LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTI 111
Query: 74 IKEFDLN 80
+K + N
Sbjct: 112 VKRYSKN 118
Score = 27.3 bits (61), Expect = 3.6
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 34 SLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELAD-----MIKEFDLNQDGK 84
S+ F AG +D + L+ G + T + MI D + GK
Sbjct: 1 SVYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGK 56
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 32.6 bits (74), Expect = 0.072
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 15/74 (20%)
Query: 26 LMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVI-------------GEDVTDEELA 71
+ L AF L+ D + I + + I I ++ T E+ A
Sbjct: 100 TTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRA 159
Query: 72 DMI-KEFDLNQDGK 84
+ I K F N D K
Sbjct: 160 EKIWKYFGKNDDDK 173
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 32.4 bits (74), Expect = 0.074
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 32 EESLNEAFDLFAGDKDFIDFDTLKNI--------AGVIGEDVTDEELADMIKEFDLNQDG 83
F AGD + L NI + + + M+ D + G
Sbjct: 3 VRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTG 62
Query: 84 K 84
K
Sbjct: 63 K 63
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 30.8 bits (70), Expect = 0.20
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 15 KEFLQSSITDKLMKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADM 73
EF + L + F F D+ +D L+ +G + + + +
Sbjct: 62 NEFKE------LWAV--LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSI 113
Query: 74 IKEFD 78
K +
Sbjct: 114 AKRYS 118
Score = 28.5 bits (64), Expect = 1.4
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 33 ESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVT-----DEELADMIKEFDLNQDGK 84
+ L F AG ID D L+ G E M+ D + G
Sbjct: 2 DPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGT 58
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 29.0 bits (65), Expect = 0.37
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + F ++ GDK ++ LK + +G+ + ++ D N+D +
Sbjct: 10 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 69
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 28.9 bits (65), Expect = 0.39
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLKN-IAGVIGEDVTDEELAD-MIKEFDLNQDGK 84
L F+ +A GD + + + LK I + D + +E D N DG+
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGE 63
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 29.5 bits (66), Expect = 0.41
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + F ++ GDK ++ LK + +G+ + ++ D N+D +
Sbjct: 22 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNE 81
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 28.7 bits (64), Expect = 0.63
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + F ++ GDK ++ LK + +G+ + ++ D N+D +
Sbjct: 13 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNE 72
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A
{Saccharomyces cerevisiae}
Length = 1030
Score = 29.9 bits (67), Expect = 0.80
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 31 PEESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTL 89
+ ++E +D+F D+ ++N G D + E ++ +E + KK +L
Sbjct: 9 SSDKIDEMYDIFGDGHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISL 67
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown
function, uncharacterized protein; 1.50A {Vibrio
cholerae o1 biovar eltor str}
Length = 240
Score = 29.1 bits (65), Expect = 1.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 56 NIAGVIGEDVTDEELADMIKEFDLNQDG 83
G I DV+ ELA+++ E L G
Sbjct: 133 QFLGSIFYDVSLAELAELVNEVKLFDAG 160
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 29.1 bits (66), Expect = 1.3
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 60 VIGEDVTDEEL--ADM 73
GE V+ EEL AD+
Sbjct: 242 ATGEVVSAEELGGADV 257
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.5 bits (61), Expect = 1.6
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
++ F +A GDK + LK +A + + + + D N+D +
Sbjct: 10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCE 69
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 28.6 bits (65), Expect = 1.9
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 62 GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96
G + E+ D I T H GTC+
Sbjct: 441 GTPNSAAEMDDFIAR-------SVITHHHPCGTCR 468
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 27.1 bits (60), Expect = 2.3
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 26 LMKKDPEESLNEAFDLF------AGDKDFIDFDTLK-----NIAGVIGEDVTDEELADMI 74
+M E++L F GDK + +K + +GE V +E L ++
Sbjct: 1 MMSSSLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLM 60
Query: 75 KEFDLNQDGK 84
D N D +
Sbjct: 61 GSLDENSDQQ 70
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A
{Saccharomyces cerevisiae}
Length = 1219
Score = 28.3 bits (63), Expect = 2.6
Identities = 12/58 (20%), Positives = 26/58 (44%)
Query: 32 EESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGKKSTTL 89
+ ++E +D+F D+ ++N G D + E ++ +E + KK +L
Sbjct: 7 SDKIDEMYDIFGDGHDYDWALEIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISL 64
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 26.8 bits (59), Expect = 2.7
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 17/73 (23%)
Query: 29 KDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDV------------TDEELADMI- 74
+ F L + D +D L+ + E V +EE M
Sbjct: 16 DPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMRE 75
Query: 75 ---KEFDLNQDGK 84
K D NQD
Sbjct: 76 HVMKNVDTNQDRL 88
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of
RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A
{Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A*
1qmh_A* 1qmi_A
Length = 358
Score = 27.7 bits (61), Expect = 3.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 196 LTCIPGISYYSDFSFAIGTSRAIGYY 221
L PG D+ FAIG++ +
Sbjct: 96 LLFRPGTVRGGDYRFAIGSAGSCTLV 121
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 27.3 bits (61), Expect = 4.0
Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 32 EESLNEAFDLFAGDKDFIDFDTLKNIAGVIGEDVTDEEL--ADMIKEFDLN 80
++ ++ G + L N AG+ + + +++ N
Sbjct: 84 FDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTN 134
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the
center for structural genomics of I diseases, csgid,
oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Length = 223
Score = 27.3 bits (60), Expect = 4.1
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 6 LHLYCSNRSKEF------LQSSITDKLMKKDPEESLNEAFDLFAGDKDFIDFDTLK-NIA 58
L + + + + + + E +L+ ID L
Sbjct: 8 LIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEK 67
Query: 59 GVIGEDVTDEELA 71
G+++T EE
Sbjct: 68 QGNGQELTREEQK 80
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F,
structural genomics, unknown function; NMR {Haemophilus
influenzae} SCOP: d.17.7.1
Length = 110
Score = 26.5 bits (58), Expect = 4.3
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 20 SSITDKLMKKDPEESLNEAFDLF---AGD----KDFIDFDTLKNIAGVIGEDVTDEELAD 72
S +T ++ K DP+ +++ A+D+F AG+ D + F+ G + T ++ +
Sbjct: 2 SHMTTEIKKLDPDTAIDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVETADDWEE 61
Query: 73 MIKEFDLNQD 82
I ++ +
Sbjct: 62 EI-GVLIDPE 70
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 27.3 bits (61), Expect = 4.4
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 161 RVVEYRRLFMQCFENLRMAMTLVQGGEASEKVQENLTCIPGISYYSDFSFAI---GTSRA 217
++ L + E+L A + +Q + V+ +LT I Y F I +SR
Sbjct: 190 EHLKTMDLPLSVREDLLSASSFLQEKFPTVSVEIDLTLARTIEEYCGLIFTIYDTSSSRL 249
Query: 218 IG 219
+
Sbjct: 250 VA 251
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 25.9 bits (57), Expect = 4.8
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
E+L F + GDK + LK ++ + + + ++KE D N DG+
Sbjct: 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGE 68
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 25.9 bits (57), Expect = 5.1
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
E + F ++ G D + LK +A I + ++ + D NQD +
Sbjct: 12 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQ 71
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 25.9 bits (57), Expect = 5.8
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + F ++ G + LK + G + + + ++K+ D N D +
Sbjct: 9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQ 68
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 25.9 bits (57), Expect = 5.9
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLKN-IAGVIGEDVTDEELADMIKEFDLNQDGK 84
S+ + + ++ G+ + D LK + + + + KE D+N DG
Sbjct: 10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGA 65
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 27.2 bits (61), Expect = 6.3
Identities = 5/35 (14%), Positives = 7/35 (20%), Gaps = 7/35 (20%)
Query: 62 GEDVTDEELADMIKEFDLNQDGKKSTTLHIQGTCK 96
T EE D + H +
Sbjct: 459 DVTQTLEEYVDAYDP-------ATMNSNHWVSSTT 486
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 25.9 bits (57), Expect = 6.9
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 27 MKKDPEESLNEAFDLFAGDKD-FIDFDTLKNIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+ + + F+ + + I + +LA + D++QDGK
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGK 64
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics,
unknown function, joint center for STRU genomics, JCSG;
HET: MSE; 1.80A {Bacteroides ovatus}
Length = 285
Score = 26.7 bits (58), Expect = 7.8
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 65 VTDEELADMIKEFD----LNQDGKKSTTLHIQGTCKSSKLSRLAIN 106
+T LA M+K +N DG STTL I+ K + +N
Sbjct: 219 LTLPHLATMMKAVGCYNAINLDGGGSTTLIIRKVNDGGKPTFPILN 264
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 26.6 bits (59), Expect = 8.0
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 43 AGDKDFIDFDTLKNIAGVIGEDVTDEEL--ADM 73
K +D + IA ++ E D+
Sbjct: 225 MNPKGHVDLEYANEIADMVDRTGKTEPPGAVDI 257
>3f8l_A HTH-type transcriptional repressor PHNF; GNTR, HUTC, regulator,
UTRA, DNA-bindin transcription regulation; 1.90A
{Mycobacterium smegmatis}
Length = 201
Score = 26.2 bits (58), Expect = 8.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 150 LVQQIMVDSTGRVVEYRR 167
L+ ++ D +E RR
Sbjct: 161 LLNRVSYDQDDVAIEQRR 178
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR
family, MCSG, structural PSI-2, protein structure
initiative; 2.10A {Corynebacterium glutamicum} SCOP:
d.190.1.2
Length = 149
Score = 25.7 bits (57), Expect = 8.8
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 150 LVQQIMVDSTGRVVEYRR 167
V+++ +D++G+V+E
Sbjct: 115 TVERVALDNSGQVIELGS 132
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 25.1 bits (55), Expect = 9.1
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELADMIKEFDLNQDGK 84
+L + F ++ GDK + LK ++ + E E + +++ D N DG+
Sbjct: 9 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGE 68
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion
pocket, R biogenesis, unknown function; HET: TAR; 2.61A
{Kluyveromyces lactis}
Length = 365
Score = 26.5 bits (58), Expect = 9.8
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 196 LTCIPGISYYSDFSFAIGTSRAIGYY 221
+ PGI ++ S+ +GY+
Sbjct: 74 VIFRPGIITGGSYTHQCPNSKPVGYF 99
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 25.3 bits (55), Expect = 9.8
Identities = 9/61 (14%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 33 ESLNEAFDLFA---GDKDFIDFDTLK-----NIAGVIGEDVTDEELAD-MIKEFDLNQDG 83
E++ F ++ G D ++ K ++ + ++ +E++ + ++++ D N D
Sbjct: 12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADK 71
Query: 84 K 84
+
Sbjct: 72 Q 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,597,822
Number of extensions: 207628
Number of successful extensions: 1068
Number of sequences better than 10.0: 1
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 227
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)