BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11510
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 65/84 (77%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC AGAT
Sbjct: 60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
LL+FANKQD+ GAL+ I+ V E
Sbjct: 120 LLIFANKQDLPGALSSNAIREVLE 143
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/17 (100%), Positives = 17/17 (100%)
Query: 5 FKLNIWDVGGQKSLRSY 21
FKLNIWDVGGQKSLRSY
Sbjct: 60 FKLNIWDVGGQKSLRSY 76
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC AGAT
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
LL+FANKQD+ GAL+ I+ E
Sbjct: 122 LLIFANKQDLPGALSXNAIQEALE 145
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/17 (100%), Positives = 17/17 (100%)
Query: 5 FKLNIWDVGGQKSLRSY 21
FKLNIWDVGGQKSLRSY
Sbjct: 62 FKLNIWDVGGQKSLRSY 78
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC AGAT
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
LL+FANKQD+ GAL+ I+ E
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALE 145
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 21/120 (17%)
Query: 5 FKLNIWDVGGQKSLRSY--SYYGM--GML-------RHRPQVSNVAVVSLL-RNKNGGET 52
FKLNIWDVGGQKSLRSY +Y+ G++ R R Q + SLL + G T
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 53 LILKKKKMIMTFRFKLN-IWDVGGQKSLRS-YWRNYFEST-------DGLIWVVDSADKR 103
L++ K + N I + S+RS +WR S G+ W++D R
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 73/118 (61%), Gaps = 16/118 (13%)
Query: 48 NGGETLILKK----------------KKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTD 91
N G+T ILKK K + FKLNIWDVGGQKSLRSYWRNYFESTD
Sbjct: 28 NAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTD 87
Query: 92 GLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDIKNVSE 149
GLIWVVDSAD++R +DC AGATLL+FANKQD+ GAL+ I+ E
Sbjct: 88 GLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALE 145
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 5 FKLNIWDVGGQKSLRSY--SYYGM--GML-------RHRPQVSNVAVVSLL-RNKNGGET 52
FKLNIWDVGGQKSLRSY +Y+ G++ R R Q + SLL + G T
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGAT 121
Query: 53 LILKKKKMIMTFRFKLN-IWDVGGQKSLRS-YWR 84
L++ K + N I + S+RS +WR
Sbjct: 122 LLIFANKQDLPGALSXNAIQEALELDSIRSHHWR 155
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 63/84 (75%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
FKLNIWDVGG KSLRSYWRNYFESTDGLIWVVDSAD++R++DC AGAT
Sbjct: 45 FKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 104
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
LL+FANKQD+ GAL+ I+ E
Sbjct: 105 LLIFANKQDLPGALSCNAIQEALE 128
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 5 FKLNIWDVGGQKSLRSY 21
FKLNIWDVGG KSLRSY
Sbjct: 45 FKLNIWDVGGLKSLRSY 61
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
K + + FKLN+WD+GGQ+ +R YWR+YFE+TD LI+V+DSAD++R E+
Sbjct: 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
+ +L+FANKQD+ A +I
Sbjct: 113 EKLSCVPVLIFANKQDLLTAAPASEI 138
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
FKLN+WD+GGQ+ +R Y SY+
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYF 81
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
K + + FKLN+WD+GGQ+ +R YWR+YFE+TD LI+V+DSAD++R E+
Sbjct: 54 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 113
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
+ +L+FANKQD+ A +I
Sbjct: 114 EKLSCVPVLIFANKQDLLTAAPASEI 139
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
FKLN+WD+GGQ+ +R Y SY+
Sbjct: 61 FKLNVWDIGGQRKIRPYWRSYF 82
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
K + + FKLN+WD+GGQ+ +R YWR+YFE+TD LI+V+DSAD++R E+
Sbjct: 41 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
+ +L+FANKQD+ A +I
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEI 126
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
FKLN+WD+GGQ+ +R Y SY+
Sbjct: 48 FKLNVWDIGGQRKIRPYWRSYF 69
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
K + + FKLN+WD+GG + +R YWR+YFE+TD LI+V+DSAD++R E+
Sbjct: 41 KSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
+ +L+FANKQD+ A +I
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEI 126
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
FKLN+WD+GG + +R Y SY+
Sbjct: 48 FKLNVWDIGGLRKIRPYWRSYF 69
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
K +WD+GGQ S+R YWR Y+ +TD +I+VVDS D+ R+ A
Sbjct: 46 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 105
Query: 126 LLVFANKQDIEGALTPEDIKN 146
L+VFANKQD+E A+TP ++ N
Sbjct: 106 LVVFANKQDMEQAMTPSEMAN 126
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
K +WD+GGQ S+R Y YY
Sbjct: 46 LKFQVWDLGGQTSIRPYWRCYY 67
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
KLN+WD+GGQ S+R YWR Y+ T +I+VVDS DK R+ + A
Sbjct: 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121
Query: 126 LLVFANKQDIEGALTPEDI 144
LLVFANKQD GAL+ ++
Sbjct: 122 LLVFANKQDQPGALSASEV 140
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 5 FKLNIWDVGGQKSLRSY--SYYG 25
KLN+WD+GGQ S+R Y YY
Sbjct: 62 LKLNVWDLGGQTSIRPYWRCYYA 84
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGGQ +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 58 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A+ P +I+
Sbjct: 118 LIFANKQDLPDAMKPHEIQ 136
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 KLNIWDVGGQKSLRS-YSYYGMG 27
K N+WDVGGQ +R + +Y G
Sbjct: 58 KFNVWDVGGQDKIRPLWRHYYTG 80
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGGQ +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 57 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A+ P +I+
Sbjct: 117 LIFANKQDLPDAMKPHEIQ 135
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 KLNIWDVGGQKSLRS-YSYYGMG 27
K N+WDVGGQ +R + +Y G
Sbjct: 57 KFNVWDVGGQDKIRPLWRHYYTG 79
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 49 GGETLILKKKKM------IMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTDG 92
G+T IL K K+ I T F K N+WDVGGQ +R WR+Y+ T G
Sbjct: 333 AGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 392
Query: 93 LIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDIK 145
LI+VVD AD+ R+++ A +L+FANKQD+ A+ P +I+
Sbjct: 393 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 445
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
K N+WDVGGQ +R YY
Sbjct: 367 KFNVWDVGGQDKIRPLWRHYY 387
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGGQ +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A+ P +I+
Sbjct: 105 LIFANKQDLPDAMKPHEIQ 123
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 KLNIWDVGGQKSLRS-YSYYGMG 27
K N+WDVGGQ +R + +Y G
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTG 67
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGGQ +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A+ P +I+
Sbjct: 105 LIFANKQDLPDAMKPHEIQ 123
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 KLNIWDVGGQKSLRS-YSYYGMG 27
K N+WDVGGQ +R + +Y G
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTG 67
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGGQ +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII 104
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A P +I+
Sbjct: 105 LIFANKQDLPDAXKPHEIQ 123
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 KLNIWDVGGQKSLRS-YSYYGMG 27
K N+WDVGGQ +R + +Y G
Sbjct: 45 KFNVWDVGGQDKIRPLWRHYYTG 67
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 49 GGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTDG 92
G+T IL K K+ + T F+ +WDVGGQ +R WR+Y+ +TDG
Sbjct: 28 AGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDG 87
Query: 93 LIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDI 144
LI+VVDS D+ R++D A +LVFANKQD+ A++ ++
Sbjct: 88 LIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEV 139
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGG +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 58 KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A+ P +I+
Sbjct: 118 LIFANKQDLPDAMKPHEIQ 136
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGG +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 47 KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 106
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A+ P +I+
Sbjct: 107 LIFANKQDLPDAMKPHEIQ 125
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K N+WDVGG +R WR+Y+ T GLI+VVD AD+ R+++ A +
Sbjct: 48 KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 107
Query: 127 LVFANKQDIEGALTPEDIK 145
L+FANKQD+ A+ P +I+
Sbjct: 108 LIFANKQDLPDAMKPHEIQ 126
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +R WR+YF++T GLI+VVDS D+ R+++ A A LL
Sbjct: 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL 134
Query: 128 VFANKQDIEGALTPEDIKN 146
VFANKQD+ A+ ++ +
Sbjct: 135 VFANKQDMPNAMPVSELTD 153
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +R WR+YF++T GLI+VVDS D+ R+ + A LL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 122
Query: 128 VFANKQDIEGALTPEDIKN 146
VFANKQD+ A+ +I +
Sbjct: 123 VFANKQDLPNAMNAAEITD 141
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +R WR+YF++T GLI+VVDS D+ R+ + A LL
Sbjct: 62 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 121
Query: 128 VFANKQDIEGALTPEDIKN 146
VFANKQD+ A+ +I +
Sbjct: 122 VFANKQDLPNAMNAAEITD 140
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
K +WD+GG S+R YWR Y+ +TD +I+VVDS D+ R+ A
Sbjct: 48 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 107
Query: 126 LLVFANKQDIEGALTPEDIKN 146
L+VFANKQD+E A+T ++ N
Sbjct: 108 LVVFANKQDMEQAMTSSEMAN 128
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
+WDVGGQ +R WR+YF++T GLI+VVDS D+ R+ + A
Sbjct: 44 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 103
Query: 126 LLVFANKQDIEGALTPEDIKN 146
LLVFANKQD+ A+ +I +
Sbjct: 104 LLVFANKQDLPNAMNAAEITD 124
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +R WR+YF++T GLI+VVDS D+ R+ + A LL
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 270
Query: 128 VFANKQDIEGALTPEDIKN 146
VFANKQD+ A+ +I +
Sbjct: 271 VFANKQDLPNAMNAAEITD 289
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +R W++YF++T GLI+VVDS D+ R+++ A A LL
Sbjct: 63 FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLL 122
Query: 128 VFANKQDIEGALTPEDIKN 146
+FANKQD+ A+ ++ +
Sbjct: 123 LFANKQDLPNAMAISEMTD 141
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +R WR+YF++T GLI+VVDS D+ R+ + A LL
Sbjct: 66 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 125
Query: 128 VFANKQDIEGALTPEDIKN 146
VFANKQD+ A+ +I +
Sbjct: 126 VFANKQDLPNAMNAAEITD 144
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
+WDVGG +R WR+YF++T GLI+VVDS D+ R+ + A
Sbjct: 46 ISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 105
Query: 126 LLVFANKQDIEGALTPEDIKN 146
LLVFANKQD+ A+ +I +
Sbjct: 106 LLVFANKQDLPNAMNAAEITD 126
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
K +WD+GG S+R YWR Y+ +TD +I+VVDS D+ R+ A
Sbjct: 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAI 110
Query: 126 LLVFANKQDIEGALTPEDIKN 146
L+VFANKQD E A T + N
Sbjct: 111 LVVFANKQDXEQAXTSSEXAN 131
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +RS WR+Y+ +T+G+I+VVDS D+ R+ + A L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWL 122
Query: 128 VFANKQDIEGALTPEDI 144
VFANKQD+ A++ +I
Sbjct: 123 VFANKQDLPEAMSAAEI 139
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
+WDVGGQ +RS WR+Y+ +T+G+I+VVDS D+ R+ + A
Sbjct: 44 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAA 103
Query: 126 LLVFANKQDIEGALTPEDI 144
LVFANKQD+ A++ +I
Sbjct: 104 WLVFANKQDLPEAMSAAEI 122
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+WDVGGQ +RS WR+Y+ +T+G+I+V+DS D+ R+ + A L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWL 122
Query: 128 VFANKQDIEGALTPEDI 144
VFANKQD+ A++ +I
Sbjct: 123 VFANKQDLPEAMSAAEI 139
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
+WDVGGQ +RS WR+Y+ +T+G+I+VVDS D+ R+ + A
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAA 120
Query: 126 LLVFANKQDIEGALTPEDI 144
LVFANKQD+ A++ +I
Sbjct: 121 WLVFANKQDLPEAMSAAEI 139
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
+WD+GGQ+SLRS W Y+ +T+ +I VVDS D+ RL A +L+F
Sbjct: 64 MWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIF 123
Query: 130 ANKQDIEGALTPEDI 144
ANKQD++G +T +I
Sbjct: 124 ANKQDMKGCMTAAEI 138
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 9 IWDVGGQKSLRSY--SYY 24
+WD+GGQ+SLRS +YY
Sbjct: 64 MWDIGGQESLRSSWNTYY 81
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 63 TFRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXX 119
T ++K +WD+GGQ +R YWR YF TD +I+VVDS D+ R+
Sbjct: 60 TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119
Query: 120 XXAGATLLVFANKQDIEGALTPEDI 144
+ LL+FANKQD+ A + +I
Sbjct: 120 ELRKSLLLIFANKQDLPDAASEAEI 144
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
+WDVGGQ +R WR+Y+++T +I+VVDS D+ R+ + A
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAI 120
Query: 126 LLVFANKQDIEGALTPEDIKNVSEK 150
LLVFANK D+ A++ I V+EK
Sbjct: 121 LLVFANKHDLPQAMS---ISEVTEK 142
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
+WD+GGQ+SLRS W Y+ +T+ +I VVDS D+ R+ A LL+F
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 130 ANKQDIEGALTPEDI 144
ANKQD++ +T +I
Sbjct: 124 ANKQDVKECMTVAEI 138
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 9 IWDVGGQKSLRSY--SYY 24
+WD+GGQ+SLRS +YY
Sbjct: 64 MWDIGGQESLRSSWNTYY 81
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
+WD+GGQ+SLRS W Y+ +T+ +I VVDS D+ R+ A LL+F
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 130 ANKQDIEGALTPEDI 144
ANKQD++ +T +I
Sbjct: 124 ANKQDVKECMTVAEI 138
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 9 IWDVGGQKSLRSY--SYY 24
+WD+GGQ+SLRS +YY
Sbjct: 64 MWDIGGQESLRSSWNTYY 81
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 27 GMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNI 70
G++ Q V +V L N G+T IL + M I+ + +
Sbjct: 13 GLVPRGSQEHKVIIVGL---DNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLM 69
Query: 71 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFA 130
WD+GGQ+SLRS W Y+ +T+ +I VVDS D+ R+ A LL+FA
Sbjct: 70 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 129
Query: 131 NKQDIEGALTPEDI 144
NKQD++ +T +I
Sbjct: 130 NKQDVKECMTVAEI 143
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 9 IWDVGGQKSLRSY--SYY 24
+WD+GGQ+SLRS +YY
Sbjct: 69 MWDIGGQESLRSSWNTYY 86
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
+WD+GGQ+SLRS W Y+ +T+ +I VVDS D+ R+ A LL+F
Sbjct: 70 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 129
Query: 130 ANKQDIEGALTPEDI 144
ANKQD++ +T +I
Sbjct: 130 ANKQDVKECMTVAEI 144
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 9 IWDVGGQKSLRSY--SYY 24
+WD+GGQ+SLRS +YY
Sbjct: 70 MWDIGGQESLRSSWNTYY 87
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+ +WD+GGQ RS W Y ++++VD+AD+ ++E G +L
Sbjct: 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128
Query: 128 VFANKQDIEGALTPEDI 144
V NK+D+ GAL +++
Sbjct: 129 VLGNKRDLPGALDEKEL 145
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+ +WD+GGQ RS W Y ++++VD+AD+ ++E G +L
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 137
Query: 128 VFANKQDIEGALTPEDI 144
V NK+D+ GAL +++
Sbjct: 138 VLGNKRDLPGALDEKEL 154
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
+ IWD+GGQ RS W Y + +++++D+AD+ ++E G +L
Sbjct: 69 IKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVL 128
Query: 128 VFANKQDIEGALTPEDIKNVSEK 150
V NK+D+ AL D K + EK
Sbjct: 129 VLGNKRDLPNAL---DEKQLIEK 148
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL-----EDCAXXXXXXXXXX 119
R ++D+GG K R W Y+++ D +I+VVDS+D RL E A
Sbjct: 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE 121
Query: 120 XXAGA--TLLVFANKQDIEGALTPEDIKNVSEKAT 152
G L FANK D GA T ++ + + T
Sbjct: 122 LPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
MTF +D+GG + R W+NY + +G++++VD AD RL +
Sbjct: 79 MTF----TTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETI 134
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
+ +L+ NK D A++ E ++ +
Sbjct: 135 SNVPILILGNKIDRTDAISEEKLREI 160
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
MTF +D+GG R W+NY + +G++++VD AD RL +
Sbjct: 66 MTF----TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 121
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
A +L+ NK D A++ E ++ +
Sbjct: 122 ANVPILILGNKIDRPEAISEERLREM 147
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
MTF +D+GG R W+NY + +G++++VD AD RL +
Sbjct: 69 MTF----TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 124
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
A +L+ NK D A++ E ++ +
Sbjct: 125 ANVPILILGNKIDRPEAISEERLREM 150
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
MTF +D+GG R W+NY + +G++++VD AD RL +
Sbjct: 60 MTF----TTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 115
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
A +L+ NK D A++ E ++ +
Sbjct: 116 ANVPILILGNKIDRPEAISEERLREM 141
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K +D+GG R W++YF +G++++VD+AD R ++
Sbjct: 46 KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 105
Query: 127 LVFANKQDIEGALTPEDIKN 146
++ NK D A++ ++++
Sbjct: 106 VILGNKIDAPNAVSEAELRS 125
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
K +D+GG R W++YF +G++++VD+AD R ++
Sbjct: 68 KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 127
Query: 127 LVFANKQDIEGALTPEDIKN 146
++ NK D A++ ++++
Sbjct: 128 VILGNKIDAPNAVSEAELRS 147
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 33 PQVSNVAVVSLLRNKNGGETLILKKKK--------MIMTFRFKL----------NIWDVG 74
P+ S V L N G+T I+ K K ++ T F + ++D+
Sbjct: 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMS 75
Query: 75 GQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAG--ATLLVFANK 132
GQ R+ W +Y++ +I+V+DS+D+ R+ +L FANK
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANK 135
Query: 133 QDIEGALT 140
D+ A+T
Sbjct: 136 MDLRDAVT 143
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCAXXXXXXXX 117
++ DVGGQ+S R W ++F D I+V A+ RL +
Sbjct: 163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXT 222
Query: 118 XXXXAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLN 157
GA L+F NK D+ EK TKV LN
Sbjct: 223 NEFLKGAVKLIFLNKXDL-----------FEEKLTKVPLN 251
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ KL IWD GQ+ R+ Y+ G+I V D D+R + A
Sbjct: 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE-A 109
Query: 125 TLLVFANKQDIEGALTPED 143
LL+ NK D+E + D
Sbjct: 110 QLLLVGNKSDMETRVVTAD 128
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ KL IWD GQ+ R+ Y+ G+I V D D+R + A
Sbjct: 51 KVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDE-A 109
Query: 125 TLLVFANKQDIEGALTPED 143
LL+ NK D E + D
Sbjct: 110 QLLLVGNKSDXETRVVTAD 128
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ KL +WD GQ+ R+ Y+ G+I V D D+R + A
Sbjct: 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE-A 126
Query: 125 TLLVFANKQDIEGALTPED 143
LL+ NK D+E + D
Sbjct: 127 QLLLVGNKSDMETRVVTAD 145
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ KL +WD GQ+ R+ Y+ G+I V D D+R + A
Sbjct: 55 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE-A 113
Query: 125 TLLVFANKQDIEGALTPED 143
LL+ NK D+E + D
Sbjct: 114 QLLLVGNKSDMETRVVTAD 132
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
+ KL IWD GQ+S RS R+Y+ G + V D
Sbjct: 58 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 91
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
+ KL IWD GQ+S RS SYY
Sbjct: 58 QIKLQIWDTAGQESFRSITRSYY 80
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
+ KL IWD GQ+S RS R+Y+ G + V D
Sbjct: 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 102
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
+ KL IWD GQ+S RS SYY
Sbjct: 69 QIKLQIWDTAGQESFRSITRSYY 91
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ KL +WD GQ+ R+ Y+ G+I V D D+R + A
Sbjct: 51 KVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDE-A 109
Query: 125 TLLVFANKQDIEGALTPED 143
LL+ NK D E + D
Sbjct: 110 QLLLVGNKSDXETRVVTAD 128
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
R KL IWD GQ+ R+ ++Y+ S +G I D
Sbjct: 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYD 110
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ +L IWD GQ+ S Y+ S G+I V D K +D A
Sbjct: 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDA 132
Query: 125 TLLVFANKQDIE 136
LL+ NK D E
Sbjct: 133 ELLLVGNKLDCE 144
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ + G+I V D D+
Sbjct: 58 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 94
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ + G+I V D D+
Sbjct: 58 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 94
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ + G+I V D D+
Sbjct: 71 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 107
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
+ KL IWD GQ+ RS ++Y+ S + LI D
Sbjct: 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYD 107
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL 105
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 104
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 59 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 95
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ KL IWD GQ+ R+ R+Y+ G + V D +R +
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD-ITRRSTYNHLSSWLTDARNLTNPNT 121
Query: 125 TLLVFANKQDIEGA--LTPEDIKNVSEK 150
+++ NK D+E +T E+ K +E+
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEE 149
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLED 107
KL IWD GQ+ R+ +Y+ G+I V D D+ ++
Sbjct: 59 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDN 99
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL 105
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 104
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 58 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 94
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 48 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 85
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 58 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 95
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 75 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 111
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 56 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 92
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 56 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 92
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
R L +WD GQ+ RS ++YF DG++ + D
Sbjct: 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYD 109
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL 105
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 83 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 121
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
+ KL IWD GQ+ R+ Y+ T G+I V D
Sbjct: 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 90
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGA 124
+ KL IWD GQ R+ R+Y+ G + V D +R +
Sbjct: 78 KIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYD-ITRRSTYNHLSSWLTDARNLTNPNT 136
Query: 125 TLLVFANKQDIEGA--LTPEDIKNVSEK 150
+++ NK D+E +T E+ K +E+
Sbjct: 137 VIILIGNKADLEAQRDVTYEEAKQFAEE 164
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
KL IWD GQ+ RS R+Y+ G + V D
Sbjct: 60 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 91
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
KL IWD GQ+ RS R+Y+ G + V D
Sbjct: 61 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 92
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
KL IWD GQ+ RS R+Y+ G + V D
Sbjct: 75 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 106
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103
KL IWD GQ+ R+ +Y+ G+I V D D+
Sbjct: 47 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 84
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWV----------VDSADKRRLEDCAX 110
F FK ++DVGGQ+S R W + FE +I++ V+ + R+ +
Sbjct: 159 FSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLH 218
Query: 111 XXXXXXXXXXXAGATLLVFANKQDI 135
A ++++F NK+D+
Sbjct: 219 LFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 189 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 229
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 195 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 235
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 191 FSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 231
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 188 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 191 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 231
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 188 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 188 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLED 107
R KL IWD GQ+ R+ Y+ G++ V D +++ ++
Sbjct: 54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 96
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 163 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 203
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 164 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 204
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 165 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 162 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 202
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 159 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 199
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 157 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 197
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 158 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 163 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 203
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 158 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 160 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 160 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 188 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLED 107
R KL IWD GQ+ R+ Y+ G++ V D +++ ++
Sbjct: 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108
R K IWD GQ+ R+ Y+ G + V D + E+C
Sbjct: 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC 104
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 160 FSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 158 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 165 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W + FE +I+ V +D
Sbjct: 165 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97
F FK ++DVGGQ+S R W + FE +I+ V
Sbjct: 169 FTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCV 205
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTD-GLIWVVDSAD-KRRLEDCAX--XXXXXXXXXXXAG 123
L + D+ G +SLR + F+S+ +++VVDSA +R ++D A
Sbjct: 56 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS 115
Query: 124 ATLLVFANKQDIEGALTPEDIKNVSEK 150
+LL+ NKQDI A + + I+ EK
Sbjct: 116 PSLLIACNKQDIAMAKSAKLIQQQLEK 142
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 55 LKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102
L KK I R L IWD GQ+ + Y+ ++G I V D D+
Sbjct: 58 LTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE 105
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAG 123
F+ + +++ V GQ + + DG+++V DSA RL A G
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESXRNXRENLAEYG 130
Query: 124 ATL-----LVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVL 165
TL ++ NK+D+ AL E ++ V ++ + KF VL
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEXVRAV--------VDPEGKFPVL 169
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 55 LKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102
L KK I R L IWD GQ+ + Y+ ++G I V D D+
Sbjct: 44 LTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE 91
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 55 LKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102
L KK I R L IWD GQ+ + Y+ ++G I V D D+
Sbjct: 44 LTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE 91
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAG 123
F+ + +++ V GQ + + DG+++V DSA RL A G
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYG 130
Query: 124 ATL-----LVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVL 165
TL ++ NK+D+ AL E ++ V ++ + KF VL
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAV--------VDPEGKFPVL 169
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
KL IWD GQ+ R+ +Y+ G+I V D
Sbjct: 65 KLAIWDTAGQERFRTLTPSYYRGAQGVILVYD 96
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGGQ+S R W FE +I+ V +D
Sbjct: 175 FTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSD 215
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 64 FRFK-LNI--WDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK LN +DVGGQ+S R W + FE +I+ V +D
Sbjct: 185 FSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 225
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 61 IMTFRFKLN-----IWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADKRRL 105
I+ + F L + DVGGQ+S R W + FE+ +++ +V+S ++ R+
Sbjct: 183 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 242
Query: 106 EDCAXXXXXXXXXXXXAGATLLVFANKQDI 135
E+ +++++F NK+D+
Sbjct: 243 EESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIW----------VVDSADKRRLEDCAXXXXXXXXXXXX 121
DVGGQ+S R W + FE+ +++ +V+S ++ R+E+
Sbjct: 173 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232
Query: 122 AGATLLVFANKQDI 135
+++++F NK+D+
Sbjct: 233 QNSSVILFLNKKDL 246
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 61 IMTFRFKLN-----IWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADKRRL 105
I+ + F L + DVGGQ+S R W + FE+ +++ +V+S ++ R+
Sbjct: 185 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 244
Query: 106 EDCAXXXXXXXXXXXXAGATLLVFANKQDI 135
E+ +++++F NK+D+
Sbjct: 245 EESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIW----------VVDSADKRRLEDCAXXXXXXXXXXXX 121
DVGGQ+S R W + FE+ +++ +V+S ++ R+E+
Sbjct: 199 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 258
Query: 122 AGATLLVFANKQDI 135
+++++F NK+D+
Sbjct: 259 QNSSVILFLNKKDL 272
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 56 KKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXX 115
+KK ++ +++I D GQ+ + NYF S +G + V + A
Sbjct: 56 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 115
Query: 116 XXXXXXAGATLLVFANKQDIEG--ALTPEDIKNVSEK 150
L+ NK D+E ++ E+ KN +E+
Sbjct: 116 LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 56 KKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXX 115
+KK ++ +++I D GQ+ + NYF S +G + V + A
Sbjct: 44 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 103
Query: 116 XXXXXXAGATLLVFANKQDIEG--ALTPEDIKNVSEK 150
L+ NK D+E ++ E+ KN +E+
Sbjct: 104 LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 140
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIW----------VVDSADKRRLEDCAXXXXXXXXXXXX 121
DVGGQ+S R W + FE+ +++ +V+S ++ R+E+
Sbjct: 193 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 252
Query: 122 AGATLLVFANKQDI 135
+++++F NK+D+
Sbjct: 253 QNSSVILFLNKKDL 266
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 56 KKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXX 115
+KK ++ +++I D GQ+ + NYF S +G + V + A
Sbjct: 52 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 111
Query: 116 XXXXXXAGATLLVFANKQDIEG--ALTPEDIKNVSEK 150
L+ NK D+E ++ E+ KN +E+
Sbjct: 112 LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
KL IWD G + RS R+Y+ G + V D
Sbjct: 58 KLQIWDTAGLERFRSVTRSYYRGAAGALLVYD 89
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLED 107
+ KL +WD GQ+ RS Y+ L+ + D +K ++
Sbjct: 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
DVGGQ+S R W F+S ++++V S++
Sbjct: 207 DVGGQRSERKRWFECFDSVTSILFLVSSSE 236
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 51 ETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAX 110
+++ LK K+I K IWD GQ+ R+ Y+ G + V D K E+
Sbjct: 47 KSIQLKNNKII-----KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEK 101
Query: 111 XXXXXXXXXXXAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKL-----------NKQ 159
LLV NK D++ D + ++ A K KL N +
Sbjct: 102 WLKELRDNADSNIVILLV-GNKSDLKHLRVIND-NDATQYAKKEKLAFIETSALEATNVE 159
Query: 160 SKFQVLLNEVSN 171
F LLNE+ N
Sbjct: 160 LAFHQLLNEIYN 171
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
DVGGQ+S R W F+S ++++V S++
Sbjct: 183 DVGGQRSERKRWFECFDSVTSILFLVSSSE 212
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DV GQ+S R W + FE +I+ V +D
Sbjct: 189 FTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSD 229
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVG Q+S R W + FE +I+ V +D
Sbjct: 188 FTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102
R KL IWD GQ+ R+ Y+ G + + D A++
Sbjct: 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQ 107
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIWVVDSA--------DKR--RLEDCAXXXXXXXXXXXX 121
DVGGQ+S R W F+ ++++V S+ D+R RL +
Sbjct: 205 DVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLF 264
Query: 122 AGATLLVFANKQDIEGALTPEDIKNVSEK 150
++++F NK D L E +K+VS K
Sbjct: 265 FNVSIILFLNKMD----LLVEKVKSVSIK 289
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 56 KKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXX 115
+KK ++ +++I D GQ+ + NYF S +G + V + A
Sbjct: 42 RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 101
Query: 116 XXXXXXAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165
L+ NK D+E ++ E+ KN + E + K + N F L
Sbjct: 102 LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161
Query: 166 LNEV 169
+ E+
Sbjct: 162 MREI 165
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DV GQ+S R W + FE +I+ V +D
Sbjct: 189 FTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSD 229
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
R KL IWD GQ+ R+ Y+ G I + D
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 104
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
R KL IWD GQ+ R+ Y+ G I + D
Sbjct: 53 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 86
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 100
+++DVGGQ+ R W F +I+VV S+
Sbjct: 205 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 100
+++DVGGQ+ R W F +I+VV S+
Sbjct: 205 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 100
+++DVGGQ+ R W F +I+VV S+
Sbjct: 219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 64 FRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101
F FK ++DVGG +S R W + FE +I+ V +D
Sbjct: 188 FTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 100
+++DVGGQ+ R W F +I+VV S+
Sbjct: 219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 100
+++DVGGQ+ R W F +I+VV S+
Sbjct: 219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 65 RFKLNIWDVGGQKSLR-SYWRNYFESTDGLIWVVD 98
R K+ +WD GQ+ R S ++Y+ + +++V D
Sbjct: 77 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYD 111
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCA 109
+L +WD GQ+ RS +Y + I V D +++ E+
Sbjct: 51 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT 93
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
F+ L +WD GQ+ RS +F G + + D
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 116
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 65 RFKLNIWDVGGQKSLR-SYWRNYFESTDGLIWVVD 98
R K+ +WD GQ+ R S ++Y+ + +++V D
Sbjct: 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYD 102
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
L++ D GQ+ + Y + DG + V DK E ++
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 128 VFANKQDI 135
+ ANK D+
Sbjct: 128 LVANKVDL 135
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
L++ D GQ+ + Y + DG + V DK E ++
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 128 VFANKQDI 135
+ ANK D+
Sbjct: 128 LVANKVDL 135
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
L++ D GQ+ + Y + DG + V DK E ++
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 128 VFANKQDI 135
+ ANK D+
Sbjct: 128 LVANKVDL 135
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
L++ D GQ+ + Y + DG + V DK E ++
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Query: 128 VFANKQDI 135
+ ANK D+
Sbjct: 123 LVANKVDL 130
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 70 IWDVGGQKSLRSYWRNYFESTDGLIWV--VDSADKRRLED 107
++DVGGQ++ R W + FE +I+ + D+ ED
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFED 226
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
K IWD GQ+ R+ Y+ G + V D A E+ +
Sbjct: 69 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIV 127
Query: 126 LLVFANKQDIEG--ALTPEDIKNVSEK--------ATKVKLNKQSKFQVLLNEV 169
+++ NK D+ A+ ++ + +EK + N ++ FQ +L E+
Sbjct: 128 IMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 56 KKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXX 115
+KK ++ +++I D G + + NYF S +G + V + A
Sbjct: 44 RKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI 103
Query: 116 XXXXXXAGATLLVFANKQDIEG--ALTPEDIKNVSEK 150
L+ NK D+E ++ E+ KN +E+
Sbjct: 104 LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 140
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
K IWD GQ+ R+ Y+ G + V D A E+ +
Sbjct: 78 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIV 136
Query: 126 LLVFANKQDIEG--ALTPEDIKNVSEK--------ATKVKLNKQSKFQVLLNEV 169
+++ NK D+ A+ ++ + +EK + N ++ FQ +L E+
Sbjct: 137 IMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108
+ K IWD G + R+ Y+ G + V D + E+C
Sbjct: 58 KIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENC 101
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCAXXXXXXXXXXXX 121
DVGG +S R W F+S ++++V S++ RL +
Sbjct: 183 DVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 242
Query: 122 AGATLLVFANKQDI 135
+ ++++F NK D+
Sbjct: 243 SNVSIILFLNKTDL 256
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLE 106
+L +WD GQ+ + + Y+ + V + D+ E
Sbjct: 55 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94
>pdb|2IAH|A Chain A, Crystal Structure Of The Ferripyoverdine Receptor Of The
Outer Membrane Of Pseudomonas Aeruginosa Bound To
Ferripyoverdine.
pdb|2O5P|A Chain A, Crystal Structure Of The Full Length Ferric Pyoverdine
Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
In Its Apo Form
pdb|2O5P|B Chain B, Crystal Structure Of The Full Length Ferric Pyoverdine
Outer Membrane Receptor Fpva Of Pseudomonas Aeruginosa
In Its Apo Form
pdb|2W16|A Chain A, Structures Of Fpva Bound To Heterologous Pyoverdines
pdb|2W16|B Chain B, Structures Of Fpva Bound To Heterologous Pyoverdines
pdb|2W6T|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
pdb|2W6T|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Dsm50106)-Fe Complex
pdb|2W6U|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(G173)-Fe Complex
pdb|2W6U|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(G173)-Fe Complex
pdb|2W75|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Apo-Fpva
pdb|2W75|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Apo-Fpva
pdb|2W76|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
pdb|2W76|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pa6)-Fe Complex
pdb|2W77|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
pdb|2W77|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Pfl18.1)-Fe Complex
pdb|2W78|A Chain A, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
pdb|2W78|B Chain B, Structures Of P. Aeruginosa Fpva Bound To Heterologous
Pyoverdines: Fpva-Pvd(Atcc13535)-Fe Complex
Length = 772
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 123 GATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLL 166
G+ L F + DI+ PE+++N A K KL LL
Sbjct: 13 GSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELL 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,399,446
Number of Sequences: 62578
Number of extensions: 150298
Number of successful extensions: 731
Number of sequences better than 100.0: 168
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 260
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)