Query psy11510
Match_columns 171
No_of_seqs 117 out of 1182
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:16:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.1E-34 2.4E-39 206.5 13.7 135 35-170 6-172 (205)
2 KOG0092|consensus 100.0 1.3E-32 2.8E-37 195.3 11.8 134 36-170 3-167 (200)
3 KOG0098|consensus 100.0 4.7E-32 1E-36 191.4 14.2 136 35-171 3-169 (216)
4 KOG0078|consensus 100.0 6.9E-32 1.5E-36 194.5 14.8 136 34-170 8-174 (207)
5 cd04121 Rab40 Rab40 subfamily. 100.0 9E-31 1.9E-35 191.4 16.4 133 36-170 4-167 (189)
6 KOG0094|consensus 100.0 3.2E-31 6.9E-36 188.5 13.5 135 35-169 19-184 (221)
7 smart00177 ARF ARF-like small 100.0 1.3E-30 2.7E-35 188.4 15.8 136 36-171 11-175 (175)
8 cd04120 Rab12 Rab12 subfamily. 100.0 1.3E-30 2.8E-35 192.3 15.5 131 39-170 1-163 (202)
9 KOG0080|consensus 100.0 3.4E-31 7.3E-36 183.0 11.2 137 35-171 8-175 (209)
10 PLN00223 ADP-ribosylation fact 100.0 2.5E-30 5.5E-35 187.9 16.2 136 36-171 15-179 (181)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.1E-30 4.6E-35 188.4 15.5 135 35-171 2-181 (182)
12 cd04149 Arf6 Arf6 subfamily. 100.0 2.9E-30 6.3E-35 185.4 15.3 132 36-167 7-167 (168)
13 cd01875 RhoG RhoG subfamily. 100.0 6.4E-30 1.4E-34 187.2 15.7 132 37-170 2-177 (191)
14 PF00025 Arf: ADP-ribosylation 100.0 8.5E-30 1.8E-34 184.2 15.7 141 29-169 5-175 (175)
15 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.3E-30 1.4E-34 184.3 15.0 133 38-170 2-164 (172)
16 cd04133 Rop_like Rop subfamily 100.0 6.1E-30 1.3E-34 185.1 14.6 130 39-170 2-173 (176)
17 KOG0095|consensus 100.0 3.8E-30 8.1E-35 176.1 11.7 134 35-169 4-168 (213)
18 cd04122 Rab14 Rab14 subfamily. 100.0 1.8E-29 3.8E-34 180.5 15.6 133 38-171 2-165 (166)
19 KOG0087|consensus 100.0 2.7E-30 5.9E-35 185.8 11.3 136 35-171 11-177 (222)
20 cd04131 Rnd Rnd subfamily. Th 100.0 1.1E-29 2.5E-34 184.0 14.3 132 38-171 1-177 (178)
21 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.6E-29 5.7E-34 178.9 15.1 129 39-167 1-158 (159)
22 PTZ00133 ADP-ribosylation fact 100.0 3.5E-29 7.6E-34 182.0 16.1 135 36-170 15-178 (182)
23 KOG0093|consensus 100.0 2.9E-29 6.3E-34 171.1 14.4 134 37-171 20-184 (193)
24 KOG0079|consensus 100.0 7E-30 1.5E-34 174.3 10.9 132 37-170 7-169 (198)
25 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.9E-29 8.4E-34 184.3 15.9 132 39-170 1-168 (201)
26 KOG0394|consensus 100.0 1.9E-29 4.2E-34 177.8 12.7 136 35-170 6-178 (210)
27 cd04127 Rab27A Rab27a subfamil 100.0 6.8E-29 1.5E-33 179.5 16.0 135 37-171 3-178 (180)
28 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.5E-29 1.6E-33 186.1 16.7 133 36-170 11-188 (232)
29 KOG0070|consensus 100.0 1.6E-29 3.5E-34 178.8 11.6 138 33-170 12-178 (181)
30 cd04158 ARD1 ARD1 subfamily. 100.0 8.1E-29 1.7E-33 177.9 15.4 131 40-170 1-161 (169)
31 cd04136 Rap_like Rap-like subf 100.0 7.7E-29 1.7E-33 176.1 15.1 131 39-169 2-162 (163)
32 KOG0073|consensus 100.0 4.6E-29 1E-33 172.8 13.0 142 29-170 7-178 (185)
33 PTZ00369 Ras-like protein; Pro 100.0 1E-28 2.3E-33 180.4 15.8 135 36-170 3-167 (189)
34 cd04175 Rap1 Rap1 subgroup. T 100.0 9.6E-29 2.1E-33 176.2 14.9 133 38-170 1-163 (164)
35 KOG0086|consensus 100.0 5.5E-29 1.2E-33 170.9 12.7 136 35-171 6-172 (214)
36 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.8E-28 3.9E-33 173.7 15.6 132 38-169 1-161 (162)
37 PLN03071 GTP-binding nuclear p 100.0 1.7E-28 3.6E-33 183.3 16.1 133 35-170 10-172 (219)
38 cd04154 Arl2 Arl2 subfamily. 100.0 2.1E-28 4.6E-33 176.2 15.3 138 30-167 6-172 (173)
39 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.6E-28 3.4E-33 177.5 14.5 131 38-170 1-175 (175)
40 cd00877 Ran Ran (Ras-related n 100.0 1.6E-28 3.5E-33 176.0 13.9 130 39-170 1-159 (166)
41 cd01867 Rab8_Rab10_Rab13_like 100.0 3.4E-28 7.4E-33 174.1 15.6 134 37-171 2-166 (167)
42 cd04119 RJL RJL (RabJ-Like) su 100.0 3.8E-28 8.3E-33 172.9 15.6 133 39-171 1-168 (168)
43 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.7E-28 8E-33 172.8 15.4 133 37-169 1-163 (164)
44 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.8E-28 8.2E-33 173.5 15.5 133 38-171 2-165 (166)
45 smart00173 RAS Ras subfamily o 100.0 4.7E-28 1E-32 172.5 15.4 132 39-170 1-162 (164)
46 cd04116 Rab9 Rab9 subfamily. 100.0 5.4E-28 1.2E-32 173.3 15.4 134 36-169 3-170 (170)
47 cd04117 Rab15 Rab15 subfamily. 100.0 4.6E-28 9.9E-33 172.7 15.0 129 39-168 1-160 (161)
48 cd04111 Rab39 Rab39 subfamily. 100.0 5E-28 1.1E-32 179.8 15.7 134 37-170 1-166 (211)
49 cd04176 Rap2 Rap2 subgroup. T 100.0 4.9E-28 1.1E-32 172.3 15.0 132 38-169 1-162 (163)
50 cd01871 Rac1_like Rac1-like su 100.0 3.7E-28 8E-33 175.4 14.3 129 38-168 1-173 (174)
51 cd01865 Rab3 Rab3 subfamily. 100.0 7E-28 1.5E-32 172.2 15.2 131 39-170 2-163 (165)
52 cd04144 Ras2 Ras2 subfamily. 100.0 5.5E-28 1.2E-32 176.7 14.8 131 40-170 1-163 (190)
53 cd04126 Rab20 Rab20 subfamily. 100.0 9.7E-28 2.1E-32 179.0 15.7 131 39-170 1-190 (220)
54 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.2E-27 2.6E-32 178.7 15.7 131 38-170 1-176 (222)
55 cd04110 Rab35 Rab35 subfamily. 100.0 1.7E-27 3.6E-32 175.4 16.2 133 36-170 4-167 (199)
56 cd04124 RabL2 RabL2 subfamily. 100.0 8.7E-28 1.9E-32 171.2 14.2 129 39-170 1-158 (161)
57 cd01864 Rab19 Rab19 subfamily. 100.0 1.3E-27 2.8E-32 170.7 15.0 131 37-168 2-164 (165)
58 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.1E-27 2.3E-32 172.8 14.7 133 35-167 12-173 (174)
59 cd04134 Rho3 Rho3 subfamily. 100.0 8.2E-28 1.8E-32 175.7 14.3 131 39-171 1-175 (189)
60 cd04109 Rab28 Rab28 subfamily. 100.0 1.7E-27 3.7E-32 177.3 16.1 132 39-170 1-166 (215)
61 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.4E-27 5.1E-32 172.4 16.1 134 37-170 2-170 (183)
62 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-27 3.5E-32 171.4 15.1 131 40-170 2-165 (170)
63 PF00071 Ras: Ras family; Int 100.0 1.8E-27 3.8E-32 169.1 14.8 130 40-170 1-161 (162)
64 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.2E-27 2.6E-32 174.0 14.1 130 39-170 1-166 (182)
65 cd04113 Rab4 Rab4 subfamily. 100.0 1.7E-27 3.7E-32 169.2 14.6 130 39-169 1-161 (161)
66 cd01868 Rab11_like Rab11-like. 100.0 2.7E-27 5.9E-32 168.8 15.5 133 37-170 2-165 (165)
67 cd01866 Rab2 Rab2 subfamily. 100.0 3.3E-27 7.1E-32 169.2 15.8 133 37-170 3-166 (168)
68 KOG0091|consensus 100.0 1.7E-27 3.7E-32 165.2 13.5 136 36-171 6-174 (213)
69 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.8E-27 3.9E-32 170.7 14.2 128 40-167 1-166 (167)
70 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.1E-27 4.5E-32 169.9 14.4 126 40-167 1-163 (164)
71 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3E-27 6.4E-32 169.8 15.2 132 38-169 2-168 (170)
72 cd04103 Centaurin_gamma Centau 100.0 1.6E-27 3.5E-32 169.6 13.6 126 39-169 1-158 (158)
73 smart00178 SAR Sar1p-like memb 100.0 3.2E-27 7E-32 171.9 15.4 134 35-168 14-183 (184)
74 cd04140 ARHI_like ARHI subfami 100.0 3.5E-27 7.7E-32 168.5 15.2 129 39-167 2-162 (165)
75 PLN03110 Rab GTPase; Provision 100.0 2.9E-27 6.3E-32 176.3 15.3 135 35-170 9-174 (216)
76 cd04157 Arl6 Arl6 subfamily. 100.0 3.2E-27 6.9E-32 167.6 14.5 129 40-168 1-162 (162)
77 cd04132 Rho4_like Rho4-like su 100.0 4.5E-27 9.7E-32 171.1 15.1 130 39-170 1-167 (187)
78 cd04112 Rab26 Rab26 subfamily. 100.0 4.9E-27 1.1E-31 171.8 15.1 131 39-170 1-163 (191)
79 cd04156 ARLTS1 ARLTS1 subfamil 100.0 5.6E-27 1.2E-31 166.3 14.8 128 40-167 1-159 (160)
80 cd04125 RabA_like RabA-like su 100.0 5.8E-27 1.3E-31 170.9 15.2 131 39-170 1-162 (188)
81 smart00174 RHO Rho (Ras homolo 100.0 3.2E-27 7E-32 169.7 13.6 129 41-171 1-173 (174)
82 cd04151 Arl1 Arl1 subfamily. 100.0 6.2E-27 1.3E-31 166.1 14.6 128 40-167 1-157 (158)
83 cd00879 Sar1 Sar1 subfamily. 99.9 7.5E-27 1.6E-31 170.3 15.0 140 30-169 11-190 (190)
84 cd01860 Rab5_related Rab5-rela 99.9 1.4E-26 2.9E-31 164.6 15.5 131 38-169 1-162 (163)
85 cd04177 RSR1 RSR1 subgroup. R 99.9 1.3E-26 2.7E-31 166.1 15.4 133 38-170 1-164 (168)
86 smart00176 RAN Ran (Ras-relate 99.9 5.1E-27 1.1E-31 172.9 13.4 124 44-170 1-154 (200)
87 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.1E-26 2.3E-31 165.9 14.3 128 40-167 1-166 (167)
88 cd01862 Rab7 Rab7 subfamily. 99.9 1.9E-26 4E-31 165.2 15.5 132 39-170 1-167 (172)
89 cd04106 Rab23_lke Rab23-like s 99.9 1.4E-26 2.9E-31 164.5 14.6 128 39-168 1-161 (162)
90 PLN03108 Rab family protein; P 99.9 1.7E-26 3.8E-31 171.4 15.6 134 36-170 4-168 (210)
91 KOG0088|consensus 99.9 3.1E-27 6.7E-32 163.2 10.6 135 35-170 10-175 (218)
92 cd04143 Rhes_like Rhes_like su 99.9 1.6E-26 3.4E-31 175.4 15.6 131 39-169 1-170 (247)
93 smart00175 RAB Rab subfamily o 99.9 2.3E-26 5.1E-31 163.3 15.3 131 39-170 1-162 (164)
94 cd01863 Rab18 Rab18 subfamily. 99.9 2.5E-26 5.4E-31 163.0 15.2 130 39-168 1-160 (161)
95 cd01861 Rab6 Rab6 subfamily. 99.9 2.7E-26 5.9E-31 162.8 15.1 129 39-168 1-160 (161)
96 cd04101 RabL4 RabL4 (Rab-like4 99.9 4.1E-26 9E-31 162.4 15.7 129 39-169 1-163 (164)
97 KOG0071|consensus 99.9 1.4E-26 3E-31 156.8 12.4 134 35-168 14-176 (180)
98 cd04135 Tc10 TC10 subfamily. 99.9 1.9E-26 4.2E-31 165.7 13.6 130 39-170 1-174 (174)
99 cd04123 Rab21 Rab21 subfamily. 99.9 4.4E-26 9.5E-31 161.4 15.3 130 39-169 1-161 (162)
100 cd04146 RERG_RasL11_like RERG/ 99.9 2.5E-26 5.5E-31 163.9 14.1 131 40-170 1-164 (165)
101 cd04142 RRP22 RRP22 subfamily. 99.9 3.7E-26 8E-31 168.2 15.0 132 39-170 1-174 (198)
102 cd04118 Rab24 Rab24 subfamily. 99.9 4.9E-26 1.1E-30 166.5 15.2 130 39-170 1-166 (193)
103 cd01873 RhoBTB RhoBTB subfamil 99.9 3.8E-26 8.2E-31 167.8 14.5 127 38-168 2-194 (195)
104 PLN03118 Rab family protein; P 99.9 8.9E-26 1.9E-30 167.6 16.6 136 35-170 11-177 (211)
105 cd01892 Miro2 Miro2 subfamily. 99.9 3.1E-26 6.8E-31 164.6 13.6 133 36-171 2-167 (169)
106 cd00878 Arf_Arl Arf (ADP-ribos 99.9 6.3E-26 1.4E-30 160.6 14.7 128 40-167 1-157 (158)
107 cd04155 Arl3 Arl3 subfamily. 99.9 5.3E-26 1.1E-30 163.3 14.1 139 29-167 5-172 (173)
108 cd04139 RalA_RalB RalA/RalB su 99.9 1.2E-25 2.5E-30 159.6 15.6 132 39-170 1-162 (164)
109 cd04114 Rab30 Rab30 subfamily. 99.9 2.1E-25 4.6E-30 159.5 16.1 133 36-169 5-168 (169)
110 cd04130 Wrch_1 Wrch-1 subfamil 99.9 5.9E-26 1.3E-30 163.4 13.0 127 39-167 1-171 (173)
111 cd01893 Miro1 Miro1 subfamily. 99.9 2.1E-25 4.5E-30 159.6 15.2 131 39-171 1-165 (166)
112 KOG0081|consensus 99.9 2.7E-27 5.9E-32 163.5 5.1 136 35-170 6-181 (219)
113 KOG0097|consensus 99.9 1.2E-25 2.7E-30 152.8 12.4 136 35-171 8-174 (215)
114 cd04147 Ras_dva Ras-dva subfam 99.9 4E-25 8.6E-30 162.6 15.1 130 40-169 1-162 (198)
115 cd04148 RGK RGK subfamily. Th 99.9 4.1E-25 8.8E-30 165.3 15.2 130 39-170 1-163 (221)
116 cd04137 RheB Rheb (Ras Homolog 99.9 5.8E-25 1.3E-29 159.0 15.0 132 39-170 2-163 (180)
117 cd01870 RhoA_like RhoA-like su 99.9 6.2E-25 1.4E-29 158.0 13.9 130 38-169 1-174 (175)
118 cd00154 Rab Rab family. Rab G 99.9 8.7E-25 1.9E-29 153.5 14.3 128 39-167 1-159 (159)
119 cd00876 Ras Ras family. The R 99.9 9.7E-25 2.1E-29 154.1 14.6 130 40-169 1-160 (160)
120 cd04159 Arl10_like Arl10-like 99.9 1.4E-24 3.1E-29 152.6 15.0 128 40-167 1-158 (159)
121 KOG0083|consensus 99.9 7.9E-27 1.7E-31 157.1 3.3 127 43-170 2-160 (192)
122 PTZ00132 GTP-binding nuclear p 99.9 2.8E-24 6E-29 159.9 15.7 134 34-170 5-168 (215)
123 KOG0075|consensus 99.9 2.6E-25 5.6E-30 151.8 8.9 133 36-168 18-180 (186)
124 cd00157 Rho Rho (Ras homology) 99.9 1.6E-24 3.6E-29 154.9 12.6 127 39-167 1-170 (171)
125 KOG0076|consensus 99.9 2.4E-25 5.1E-30 155.8 7.6 138 32-169 11-186 (197)
126 cd04129 Rho2 Rho2 subfamily. 99.9 4.3E-24 9.3E-29 155.7 14.5 131 38-170 1-173 (187)
127 KOG0395|consensus 99.9 3.4E-24 7.5E-29 157.1 13.0 133 37-169 2-164 (196)
128 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.1E-23 2.3E-28 155.4 12.8 99 39-137 1-143 (202)
129 KOG0074|consensus 99.9 5.9E-24 1.3E-28 144.3 8.8 133 35-167 14-176 (185)
130 PLN00023 GTP-binding protein; 99.9 8.4E-23 1.8E-27 158.4 14.9 114 35-148 18-184 (334)
131 KOG0072|consensus 99.9 2E-23 4.4E-28 142.1 7.5 139 31-169 11-178 (182)
132 cd01890 LepA LepA subfamily. 99.9 3.2E-22 6.8E-27 144.3 14.0 125 40-169 2-176 (179)
133 KOG0393|consensus 99.9 4.2E-23 9.1E-28 149.4 7.5 132 37-170 3-179 (198)
134 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-21 2.3E-26 140.1 13.6 129 40-170 2-168 (168)
135 cd01898 Obg Obg subfamily. Th 99.9 8.8E-22 1.9E-26 140.7 12.4 129 40-168 2-169 (170)
136 PF08477 Miro: Miro-like prote 99.9 1.3E-21 2.8E-26 132.4 9.9 93 40-134 1-119 (119)
137 KOG4252|consensus 99.9 4.7E-22 1E-26 140.2 7.2 134 35-170 17-181 (246)
138 TIGR02528 EutP ethanolamine ut 99.9 1.4E-21 3.1E-26 136.1 9.4 118 40-166 2-141 (142)
139 COG1100 GTPase SAR1 and relate 99.9 1.1E-20 2.4E-25 140.5 14.0 133 37-170 4-185 (219)
140 PTZ00099 rab6; Provisional 99.9 7.5E-21 1.6E-25 137.6 11.9 108 62-170 25-142 (176)
141 cd04171 SelB SelB subfamily. 99.9 1.5E-20 3.2E-25 133.3 13.0 122 39-167 1-163 (164)
142 TIGR00231 small_GTP small GTP- 99.9 1.9E-20 4E-25 130.9 13.2 127 38-165 1-159 (161)
143 cd01878 HflX HflX subfamily. 99.9 1E-20 2.2E-25 139.5 12.4 133 35-169 38-204 (204)
144 cd04105 SR_beta Signal recogni 99.8 3.8E-20 8.2E-25 136.8 13.2 109 40-148 2-134 (203)
145 PRK03003 GTP-binding protein D 99.8 4.8E-20 1E-24 151.7 12.7 126 37-169 37-198 (472)
146 TIGR03156 GTP_HflX GTP-binding 99.8 5.2E-20 1.1E-24 146.0 12.1 130 37-168 188-350 (351)
147 PRK03003 GTP-binding protein D 99.8 1.6E-19 3.5E-24 148.6 15.4 155 10-169 169-381 (472)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.3E-19 7E-24 127.1 13.7 124 40-168 2-164 (168)
149 PRK12299 obgE GTPase CgtA; Rev 99.8 2E-19 4.4E-24 141.7 13.7 131 39-169 159-327 (335)
150 PRK15494 era GTPase Era; Provi 99.8 2E-19 4.4E-24 142.2 13.5 129 35-169 49-215 (339)
151 cd00882 Ras_like_GTPase Ras-li 99.8 3.3E-19 7.2E-24 123.2 12.2 124 43-166 1-156 (157)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2E-19 4.3E-24 146.5 12.7 128 35-170 200-360 (442)
153 TIGR02729 Obg_CgtA Obg family 99.8 5.2E-19 1.1E-23 139.2 13.6 132 38-169 157-328 (329)
154 cd01881 Obg_like The Obg-like 99.8 2.2E-19 4.8E-24 128.7 10.5 126 43-168 1-175 (176)
155 cd01894 EngA1 EngA1 subfamily. 99.8 2.9E-19 6.4E-24 125.6 11.0 123 42-169 1-157 (157)
156 cd01891 TypA_BipA TypA (tyrosi 99.8 7.8E-19 1.7E-23 128.7 13.6 94 39-137 3-131 (194)
157 PRK04213 GTP-binding protein; 99.8 9.5E-20 2.1E-24 134.0 8.4 131 35-169 6-191 (201)
158 PRK15467 ethanolamine utilizat 99.8 3.2E-19 6.9E-24 126.9 10.4 121 40-169 3-146 (158)
159 COG2229 Predicted GTPase [Gene 99.8 1.4E-18 3.1E-23 123.2 13.4 129 35-167 7-175 (187)
160 cd01879 FeoB Ferrous iron tran 99.8 5.3E-19 1.2E-23 124.6 11.1 120 43-169 1-156 (158)
161 TIGR00436 era GTP-binding prot 99.8 9.4E-19 2E-23 134.6 13.1 124 40-169 2-163 (270)
162 cd04164 trmE TrmE (MnmE, ThdF, 99.8 4E-19 8.7E-24 124.8 10.0 123 39-168 2-155 (157)
163 TIGR01393 lepA GTP-binding pro 99.8 1.1E-18 2.3E-23 146.7 14.3 127 38-169 3-179 (595)
164 TIGR03594 GTPase_EngA ribosome 99.8 8.7E-19 1.9E-23 142.7 13.0 154 11-169 131-343 (429)
165 cd00881 GTP_translation_factor 99.8 1.4E-18 3E-23 125.8 12.5 125 40-169 1-186 (189)
166 PRK05291 trmE tRNA modificatio 99.8 3.4E-19 7.5E-24 145.6 9.4 127 36-169 213-369 (449)
167 PRK11058 GTPase HflX; Provisio 99.8 2.1E-18 4.5E-23 139.8 13.1 130 39-169 198-361 (426)
168 KOG0077|consensus 99.8 1.8E-18 4E-23 120.5 10.6 117 35-151 17-149 (193)
169 KOG1673|consensus 99.8 1.1E-18 2.4E-23 120.4 9.3 134 36-171 18-187 (205)
170 cd01895 EngA2 EngA2 subfamily. 99.8 4.2E-18 9.2E-23 121.3 12.7 126 38-168 2-173 (174)
171 cd04163 Era Era subfamily. Er 99.8 5.9E-18 1.3E-22 119.5 12.5 127 37-168 2-167 (168)
172 PF02421 FeoB_N: Ferrous iron 99.8 1.8E-18 3.8E-23 122.1 9.6 120 39-165 1-156 (156)
173 cd01889 SelB_euk SelB subfamil 99.8 6.9E-18 1.5E-22 123.5 13.2 127 39-170 1-186 (192)
174 PRK00093 GTP-binding protein D 99.8 9.1E-18 2E-22 137.0 14.0 122 39-167 2-159 (435)
175 cd01888 eIF2_gamma eIF2-gamma 99.8 1E-17 2.2E-22 123.8 12.1 124 39-169 1-198 (203)
176 PRK05433 GTP-binding protein L 99.8 2.2E-17 4.8E-22 138.9 14.8 129 36-169 5-183 (600)
177 PRK09518 bifunctional cytidyla 99.8 1.7E-17 3.8E-22 142.4 14.3 155 10-169 406-620 (712)
178 PRK12297 obgE GTPase CgtA; Rev 99.8 2.9E-17 6.3E-22 132.7 14.5 131 39-169 159-326 (424)
179 PRK12296 obgE GTPase CgtA; Rev 99.8 1.7E-17 3.7E-22 135.9 13.2 132 38-169 159-339 (500)
180 PF00009 GTP_EFTU: Elongation 99.8 5E-17 1.1E-21 118.6 14.1 129 36-169 1-186 (188)
181 TIGR00487 IF-2 translation ini 99.7 2.3E-17 5.1E-22 138.2 13.1 124 35-167 84-247 (587)
182 PRK00089 era GTPase Era; Revie 99.7 3E-17 6.5E-22 127.5 12.7 128 37-169 4-170 (292)
183 PF09439 SRPRB: Signal recogni 99.7 2.1E-17 4.6E-22 119.0 10.6 113 37-149 2-138 (181)
184 TIGR03594 GTPase_EngA ribosome 99.7 4.3E-17 9.3E-22 132.8 13.0 125 40-169 1-159 (429)
185 KOG3883|consensus 99.7 1.3E-16 2.8E-21 110.0 13.0 133 37-169 8-174 (198)
186 cd01896 DRG The developmentall 99.7 1.4E-16 3.1E-21 120.0 14.5 127 40-169 2-225 (233)
187 CHL00189 infB translation init 99.7 2.8E-17 6E-22 140.0 11.8 124 35-167 241-407 (742)
188 PRK00454 engB GTP-binding prot 99.7 7.6E-17 1.6E-21 117.9 12.6 130 35-169 21-193 (196)
189 PRK00093 GTP-binding protein D 99.7 4.8E-17 1E-21 132.8 12.5 128 36-168 171-342 (435)
190 PRK05306 infB translation init 99.7 5.5E-17 1.2E-21 139.2 13.2 124 35-167 287-449 (787)
191 PRK09518 bifunctional cytidyla 99.7 5.7E-17 1.2E-21 139.2 13.1 128 35-169 272-435 (712)
192 cd00880 Era_like Era (E. coli 99.7 5E-17 1.1E-21 113.5 10.4 121 43-168 1-162 (163)
193 KOG4423|consensus 99.7 9.5E-19 2.1E-23 124.1 1.1 135 36-170 23-194 (229)
194 TIGR00475 selB selenocysteine- 99.7 9.9E-17 2.1E-21 134.7 13.0 122 39-168 1-164 (581)
195 TIGR03598 GTPase_YsxC ribosome 99.7 7.4E-17 1.6E-21 116.8 10.6 120 35-159 15-179 (179)
196 cd00066 G-alpha G protein alph 99.7 2.6E-16 5.6E-21 123.5 12.5 110 61-170 156-311 (317)
197 PRK12298 obgE GTPase CgtA; Rev 99.7 4.1E-16 9E-21 125.2 13.8 131 39-169 160-332 (390)
198 TIGR00491 aIF-2 translation in 99.7 2E-16 4.3E-21 132.6 12.4 115 40-162 6-160 (590)
199 PF10662 PduV-EutP: Ethanolami 99.7 1.9E-16 4.1E-21 109.7 9.6 117 40-165 3-141 (143)
200 smart00275 G_alpha G protein a 99.7 4.1E-16 8.9E-21 123.4 12.6 76 61-136 179-264 (342)
201 TIGR01394 TypA_BipA GTP-bindin 99.7 6.3E-16 1.4E-20 129.9 14.3 126 39-169 2-190 (594)
202 TIGR00483 EF-1_alpha translati 99.7 2.4E-16 5.2E-21 128.4 10.9 126 35-162 4-199 (426)
203 COG1159 Era GTPase [General fu 99.7 7.7E-16 1.7E-20 117.2 11.9 128 36-168 4-170 (298)
204 PRK09554 feoB ferrous iron tra 99.7 8.1E-16 1.8E-20 132.4 13.4 124 37-167 2-165 (772)
205 cd04169 RF3 RF3 subfamily. Pe 99.7 7.4E-16 1.6E-20 118.2 11.7 97 39-140 3-140 (267)
206 PRK10218 GTP-binding protein; 99.7 2.2E-15 4.7E-20 126.7 15.5 127 37-168 4-193 (607)
207 cd04168 TetM_like Tet(M)-like 99.7 1.1E-15 2.4E-20 115.4 12.3 94 40-138 1-131 (237)
208 PRK04004 translation initiatio 99.7 8.6E-16 1.9E-20 129.0 12.9 125 37-169 5-169 (586)
209 COG1160 Predicted GTPases [Gen 99.7 1E-15 2.2E-20 122.3 12.3 156 8-168 133-349 (444)
210 TIGR00437 feoB ferrous iron tr 99.7 3.7E-16 7.9E-21 131.5 10.4 117 45-168 1-153 (591)
211 TIGR03680 eif2g_arch translati 99.7 1.2E-15 2.6E-20 123.6 12.8 130 36-168 2-194 (406)
212 KOG0096|consensus 99.7 7.8E-17 1.7E-21 114.7 5.1 132 36-169 8-168 (216)
213 KOG1707|consensus 99.7 1.8E-15 3.8E-20 123.4 12.7 135 35-169 6-174 (625)
214 COG1160 Predicted GTPases [Gen 99.6 3.7E-15 8.1E-20 119.1 13.5 123 39-168 4-163 (444)
215 PRK04000 translation initiatio 99.6 3.6E-15 7.7E-20 120.9 13.7 129 34-169 5-200 (411)
216 PRK12317 elongation factor 1-a 99.6 2E-15 4.2E-20 123.0 11.4 126 35-162 3-197 (425)
217 cd01885 EF2 EF2 (for archaea a 99.6 5.2E-15 1.1E-19 110.6 11.9 92 40-136 2-138 (222)
218 COG0486 ThdF Predicted GTPase 99.6 3.1E-15 6.8E-20 119.8 11.4 129 35-169 214-375 (454)
219 cd04167 Snu114p Snu114p subfam 99.6 4.9E-15 1.1E-19 110.2 11.6 92 40-136 2-136 (213)
220 cd01876 YihA_EngB The YihA (En 99.6 7.5E-15 1.6E-19 103.8 12.0 122 40-168 1-169 (170)
221 cd04166 CysN_ATPS CysN_ATPS su 99.6 5.4E-15 1.2E-19 109.6 11.2 117 40-160 1-184 (208)
222 cd01883 EF1_alpha Eukaryotic e 99.6 5.3E-15 1.2E-19 110.5 9.3 95 40-137 1-151 (219)
223 KOG0090|consensus 99.6 1E-14 2.2E-19 105.9 10.2 113 36-148 36-170 (238)
224 PRK00741 prfC peptide chain re 99.6 1.4E-14 3.1E-19 120.4 11.1 101 35-140 7-148 (526)
225 PRK10512 selenocysteinyl-tRNA- 99.6 3.6E-14 7.8E-19 119.9 13.2 121 40-168 2-164 (614)
226 cd01886 EF-G Elongation factor 99.6 3.6E-14 7.9E-19 109.0 11.6 94 40-138 1-131 (270)
227 KOG0082|consensus 99.6 3E-14 6.6E-19 111.6 11.1 110 61-170 190-344 (354)
228 TIGR00503 prfC peptide chain r 99.6 3.4E-14 7.3E-19 118.1 12.0 107 35-147 8-155 (527)
229 cd04170 EF-G_bact Elongation f 99.6 3.3E-14 7.1E-19 109.3 10.9 94 40-138 1-131 (268)
230 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 3.5E-14 7.5E-19 106.5 10.3 96 40-137 1-125 (232)
231 COG1084 Predicted GTPase [Gene 99.5 5.4E-14 1.2E-18 108.2 10.6 135 29-166 158-332 (346)
232 COG2262 HflX GTPases [General 99.5 1.2E-13 2.6E-18 109.2 12.7 135 33-169 187-355 (411)
233 cd04165 GTPBP1_like GTPBP1-lik 99.5 2.4E-13 5.3E-18 101.8 13.8 123 40-167 1-220 (224)
234 cd01884 EF_Tu EF-Tu subfamily. 99.5 2E-13 4.3E-18 100.3 12.8 96 37-137 1-132 (195)
235 PF01926 MMR_HSR1: 50S ribosom 99.5 1.3E-13 2.9E-18 92.8 10.9 87 40-132 1-116 (116)
236 PRK13351 elongation factor G; 99.5 1.8E-13 3.9E-18 117.5 12.6 99 35-138 5-140 (687)
237 COG0370 FeoB Fe2+ transport sy 99.5 1.9E-13 4E-18 113.9 12.1 124 37-167 2-161 (653)
238 KOG0462|consensus 99.5 2.5E-13 5.4E-18 110.4 11.8 129 35-169 57-234 (650)
239 cd04104 p47_IIGP_like p47 (47- 99.5 7E-13 1.5E-17 97.5 12.7 92 38-136 1-120 (197)
240 COG0532 InfB Translation initi 99.5 2.2E-13 4.7E-18 110.7 10.2 121 38-166 5-166 (509)
241 PRK12735 elongation factor Tu; 99.5 1.2E-12 2.6E-17 105.8 13.9 99 34-137 8-142 (396)
242 COG0481 LepA Membrane GTPase L 99.5 5.1E-13 1.1E-17 107.2 11.2 128 36-169 7-185 (603)
243 PRK12736 elongation factor Tu; 99.5 1.5E-12 3.2E-17 105.2 13.7 98 35-137 9-142 (394)
244 TIGR00484 EF-G translation elo 99.5 5.8E-13 1.3E-17 114.3 11.7 99 35-138 7-142 (689)
245 KOG1423|consensus 99.5 6.7E-13 1.5E-17 101.4 9.9 130 35-168 69-269 (379)
246 PLN00043 elongation factor 1-a 99.4 1.6E-12 3.4E-17 106.4 12.4 121 35-160 4-203 (447)
247 smart00010 small_GTPase Small 99.4 1.5E-12 3.3E-17 88.0 10.2 112 39-159 1-115 (124)
248 PRK13768 GTPase; Provisional 99.4 1.5E-12 3.2E-17 99.3 10.7 101 67-169 98-246 (253)
249 PTZ00141 elongation factor 1- 99.4 3.6E-12 7.9E-17 104.3 13.3 98 35-136 4-158 (446)
250 PRK05124 cysN sulfate adenylyl 99.4 1.9E-12 4E-17 106.8 11.2 124 34-161 23-216 (474)
251 KOG1145|consensus 99.4 2.1E-12 4.5E-17 105.2 11.1 121 37-166 152-312 (683)
252 KOG1489|consensus 99.4 1.5E-12 3.2E-17 99.9 9.6 130 38-167 196-364 (366)
253 COG0218 Predicted GTPase [Gene 99.4 1.1E-11 2.3E-16 90.0 12.7 130 35-169 21-196 (200)
254 KOG1532|consensus 99.4 9.2E-12 2E-16 94.0 12.4 131 35-168 16-262 (366)
255 TIGR02034 CysN sulfate adenyly 99.4 2.7E-12 5.8E-17 104.1 10.3 118 39-160 1-187 (406)
256 TIGR00485 EF-Tu translation el 99.4 6E-12 1.3E-16 101.7 12.1 98 35-137 9-142 (394)
257 PRK12739 elongation factor G; 99.4 4.6E-12 9.9E-17 108.9 12.0 99 35-138 5-140 (691)
258 TIGR00490 aEF-2 translation el 99.4 6.7E-12 1.5E-16 108.2 12.6 98 35-137 16-152 (720)
259 PLN03126 Elongation factor Tu; 99.4 5.8E-12 1.3E-16 103.7 11.6 98 35-137 78-211 (478)
260 CHL00071 tufA elongation facto 99.4 8.4E-12 1.8E-16 101.3 12.4 99 34-137 8-142 (409)
261 cd01850 CDC_Septin CDC/Septin. 99.4 3.2E-12 6.8E-17 98.7 9.3 95 37-137 3-157 (276)
262 PTZ00327 eukaryotic translatio 99.4 1.5E-11 3.1E-16 100.8 13.4 130 35-167 31-230 (460)
263 PRK05506 bifunctional sulfate 99.4 7.2E-12 1.6E-16 106.7 11.9 122 35-160 21-211 (632)
264 PF00503 G-alpha: G-protein al 99.4 2.9E-12 6.3E-17 103.4 9.0 75 61-135 230-315 (389)
265 PLN03127 Elongation factor Tu; 99.4 2E-11 4.2E-16 100.0 13.8 98 35-137 58-191 (447)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.8E-11 3.9E-16 89.9 12.1 128 39-168 1-182 (196)
267 COG1163 DRG Predicted GTPase [ 99.3 1.4E-11 3E-16 95.0 11.0 132 37-168 62-287 (365)
268 cd01899 Ygr210 Ygr210 subfamil 99.3 1.7E-11 3.7E-16 96.1 11.8 60 41-100 1-110 (318)
269 KOG0099|consensus 99.3 3.3E-12 7.2E-17 95.8 6.1 75 61-135 197-281 (379)
270 COG4917 EutP Ethanolamine util 99.3 6.4E-12 1.4E-16 84.2 6.8 119 40-167 3-143 (148)
271 PRK09866 hypothetical protein; 99.3 7.4E-11 1.6E-15 98.7 14.3 99 66-167 230-350 (741)
272 PRK00049 elongation factor Tu; 99.3 3.7E-11 8.1E-16 97.1 12.0 98 35-137 9-142 (396)
273 COG3596 Predicted GTPase [Gene 99.3 5.7E-11 1.2E-15 89.9 12.0 131 35-168 36-220 (296)
274 PF03029 ATP_bind_1: Conserved 99.3 6.7E-12 1.5E-16 94.8 6.9 70 67-137 92-170 (238)
275 PRK00007 elongation factor G; 99.3 4.2E-11 9E-16 103.0 11.9 99 35-138 7-142 (693)
276 COG5256 TEF1 Translation elong 99.3 6.2E-11 1.3E-15 94.0 10.9 106 35-144 4-165 (428)
277 PRK12740 elongation factor G; 99.3 5.5E-11 1.2E-15 102.0 11.2 90 44-138 1-127 (668)
278 KOG0085|consensus 99.3 2.3E-12 4.9E-17 95.3 2.2 111 61-171 194-350 (359)
279 TIGR00991 3a0901s02IAP34 GTP-b 99.2 2.7E-10 5.9E-15 88.5 12.4 107 29-137 28-167 (313)
280 COG0536 Obg Predicted GTPase [ 99.2 1.8E-10 3.9E-15 89.5 11.4 130 40-169 161-332 (369)
281 KOG1191|consensus 99.2 6.5E-11 1.4E-15 95.5 9.1 135 35-169 265-449 (531)
282 TIGR00101 ureG urease accessor 99.2 1.8E-10 3.8E-15 84.9 10.6 71 90-169 113-195 (199)
283 PRK14845 translation initiatio 99.2 1.6E-10 3.5E-15 102.0 12.0 62 68-137 528-592 (1049)
284 PLN00116 translation elongatio 99.2 7.2E-11 1.6E-15 103.4 9.7 97 35-136 16-163 (843)
285 PTZ00416 elongation factor 2; 99.2 1E-10 2.2E-15 102.3 9.2 97 35-136 16-157 (836)
286 PF00350 Dynamin_N: Dynamin fa 99.2 1.9E-10 4.1E-15 82.0 8.9 65 65-133 100-168 (168)
287 PRK07560 elongation factor EF- 99.2 5.1E-10 1.1E-14 96.9 12.1 98 35-137 17-153 (731)
288 COG1217 TypA Predicted membran 99.1 4.2E-10 9.1E-15 90.5 10.5 104 37-145 4-142 (603)
289 COG4108 PrfC Peptide chain rel 99.1 3E-10 6.6E-15 90.7 9.3 103 35-142 9-152 (528)
290 PRK09435 membrane ATPase/prote 99.1 1.1E-09 2.3E-14 86.3 11.9 122 35-168 53-258 (332)
291 cd01853 Toc34_like Toc34-like 99.1 1E-09 2.2E-14 83.4 11.5 101 35-137 28-163 (249)
292 KOG1490|consensus 99.1 2.6E-10 5.5E-15 92.4 7.9 140 29-170 158-341 (620)
293 PF04548 AIG1: AIG1 family; I 99.1 1.7E-09 3.8E-14 80.4 11.0 100 39-140 1-133 (212)
294 cd01882 BMS1 Bms1. Bms1 is an 99.1 1.7E-09 3.7E-14 81.1 10.9 96 34-137 35-147 (225)
295 TIGR00157 ribosome small subun 99.1 1.3E-10 2.8E-15 88.3 4.3 87 77-167 24-120 (245)
296 TIGR00073 hypB hydrogenase acc 99.1 1.2E-09 2.6E-14 80.9 9.2 46 123-168 148-205 (207)
297 TIGR00750 lao LAO/AO transport 99.0 3.3E-09 7.1E-14 82.9 11.1 122 35-168 31-236 (300)
298 PF05049 IIGP: Interferon-indu 99.0 1.1E-09 2.5E-14 87.1 7.8 93 36-135 33-153 (376)
299 KOG3905|consensus 99.0 7.4E-09 1.6E-13 80.2 11.3 134 37-170 51-290 (473)
300 COG0480 FusA Translation elong 99.0 5.8E-09 1.3E-13 89.1 10.5 98 35-137 7-142 (697)
301 smart00053 DYNc Dynamin, GTPas 99.0 1.3E-08 2.8E-13 76.9 11.2 68 66-137 125-206 (240)
302 KOG3886|consensus 99.0 3.3E-09 7.2E-14 78.5 7.7 99 37-137 3-130 (295)
303 PF00735 Septin: Septin; Inte 98.9 1.2E-08 2.6E-13 78.9 10.7 101 38-147 4-163 (281)
304 KOG1144|consensus 98.9 7.9E-09 1.7E-13 87.2 10.0 91 37-135 474-604 (1064)
305 KOG1707|consensus 98.9 1.7E-08 3.7E-13 83.1 11.7 136 30-169 417-582 (625)
306 KOG0458|consensus 98.9 2.3E-08 5E-13 82.4 11.2 100 35-137 174-329 (603)
307 KOG0468|consensus 98.9 7.8E-09 1.7E-13 86.4 8.3 97 35-136 125-262 (971)
308 PRK09602 translation-associate 98.9 1.9E-08 4.1E-13 81.3 9.9 62 39-100 2-113 (396)
309 COG5257 GCD11 Translation init 98.9 1.3E-08 2.8E-13 78.7 8.5 131 36-169 8-201 (415)
310 PF03308 ArgK: ArgK protein; 98.9 2E-09 4.2E-14 81.3 3.9 121 35-167 26-227 (266)
311 PRK10463 hydrogenase nickel in 98.8 1.3E-08 2.9E-13 78.5 6.6 46 123-168 230-287 (290)
312 COG0378 HypB Ni2+-binding GTPa 98.8 1.7E-08 3.7E-13 73.0 6.5 69 91-169 119-200 (202)
313 COG2895 CysN GTPases - Sulfate 98.8 5E-08 1.1E-12 76.3 9.5 97 35-137 3-153 (431)
314 KOG0410|consensus 98.8 2.9E-08 6.3E-13 76.9 7.7 131 35-167 175-338 (410)
315 PF05783 DLIC: Dynein light in 98.8 1E-07 2.2E-12 78.5 10.8 78 36-113 23-125 (472)
316 COG1703 ArgK Putative periplas 98.7 1E-07 2.2E-12 73.3 9.3 121 35-167 48-251 (323)
317 TIGR02836 spore_IV_A stage IV 98.7 5.4E-07 1.2E-11 72.5 12.4 96 36-135 15-192 (492)
318 TIGR00993 3a0901s04IAP86 chlor 98.7 2.3E-07 5E-12 78.4 10.3 99 37-137 117-250 (763)
319 KOG1954|consensus 98.7 2.6E-07 5.6E-12 72.9 9.7 103 39-148 59-233 (532)
320 KOG0705|consensus 98.6 4.6E-08 9.9E-13 80.3 5.6 131 35-170 27-189 (749)
321 COG3276 SelB Selenocysteine-sp 98.6 6.8E-07 1.5E-11 71.8 11.9 123 40-169 2-161 (447)
322 KOG0461|consensus 98.6 5.6E-07 1.2E-11 70.5 10.4 130 35-170 4-193 (522)
323 cd01855 YqeH YqeH. YqeH is an 98.6 1.6E-07 3.5E-12 68.5 6.8 84 78-168 23-123 (190)
324 PTZ00258 GTP-binding protein; 98.6 4.4E-07 9.6E-12 73.0 9.5 66 35-100 18-126 (390)
325 KOG3887|consensus 98.6 6.4E-07 1.4E-11 67.1 9.1 96 40-136 29-148 (347)
326 COG0050 TufB GTPases - transla 98.5 9.3E-07 2E-11 67.9 9.8 95 35-137 9-142 (394)
327 cd01859 MJ1464 MJ1464. This f 98.5 3.7E-07 8.1E-12 64.4 5.4 84 80-168 3-94 (156)
328 KOG0447|consensus 98.4 3.3E-06 7.1E-11 69.9 11.2 110 36-148 306-506 (980)
329 COG5019 CDC3 Septin family pro 98.4 3.2E-06 7E-11 66.7 10.6 95 36-136 21-175 (373)
330 PRK09601 GTP-binding protein Y 98.4 2E-06 4.3E-11 68.6 9.6 62 39-100 3-107 (364)
331 cd01900 YchF YchF subfamily. 98.4 8.1E-07 1.7E-11 68.5 6.5 60 41-100 1-103 (274)
332 PRK12289 GTPase RsgA; Reviewed 98.4 9E-07 2E-11 70.5 6.1 81 83-167 83-172 (352)
333 cd03112 CobW_like The function 98.3 4.4E-06 9.4E-11 59.3 8.8 20 41-60 3-22 (158)
334 KOG2655|consensus 98.3 6.7E-06 1.5E-10 65.2 10.2 95 37-137 20-172 (366)
335 COG1618 Predicted nucleotide k 98.3 7.6E-06 1.6E-10 57.8 9.3 126 36-167 3-173 (179)
336 TIGR03597 GTPase_YqeH ribosome 98.3 1.7E-06 3.7E-11 69.3 6.7 85 76-167 50-150 (360)
337 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.4E-06 3.1E-11 67.7 6.1 79 85-167 74-161 (287)
338 PF00448 SRP54: SRP54-type pro 98.3 1E-05 2.3E-10 59.5 9.9 93 39-139 2-156 (196)
339 TIGR03348 VI_IcmF type VI secr 98.3 8.8E-06 1.9E-10 74.1 10.8 96 41-137 114-257 (1169)
340 PRK12288 GTPase RsgA; Reviewed 98.3 4.1E-06 8.9E-11 66.7 7.6 77 88-168 119-206 (347)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 1.6E-06 3.5E-11 60.2 4.5 21 40-60 85-105 (141)
342 COG5258 GTPBP1 GTPase [General 98.2 6.7E-06 1.5E-10 65.4 7.4 102 32-138 111-270 (527)
343 PRK00098 GTPase RsgA; Reviewed 98.2 2.7E-06 5.9E-11 66.5 5.2 76 87-166 78-163 (298)
344 cd01858 NGP_1 NGP-1. Autoanti 98.2 7E-06 1.5E-10 58.0 6.8 73 87-167 6-92 (157)
345 cd01858 NGP_1 NGP-1. Autoanti 98.2 2.7E-06 5.9E-11 60.1 4.7 25 36-60 100-124 (157)
346 TIGR01425 SRP54_euk signal rec 98.2 2.2E-05 4.8E-10 64.0 10.3 93 36-135 98-251 (429)
347 PRK14974 cell division protein 98.2 2.2E-05 4.7E-10 62.3 9.9 96 37-139 139-295 (336)
348 KOG0467|consensus 98.2 9.4E-06 2E-10 69.2 8.2 97 35-136 6-137 (887)
349 cd04178 Nucleostemin_like Nucl 98.1 3E-06 6.6E-11 61.0 4.3 25 36-60 115-139 (172)
350 COG5192 BMS1 GTP-binding prote 98.1 2.2E-05 4.9E-10 65.3 9.5 96 35-138 66-178 (1077)
351 cd01856 YlqF YlqF. Proteins o 98.1 5.9E-06 1.3E-10 59.3 5.6 84 78-168 8-99 (171)
352 PRK13695 putative NTPase; Prov 98.1 6.6E-06 1.4E-10 59.2 5.9 22 39-60 1-22 (174)
353 TIGR00064 ftsY signal recognit 98.1 3.6E-05 7.8E-10 59.4 10.2 95 36-138 70-232 (272)
354 KOG1547|consensus 98.1 1.7E-05 3.6E-10 59.6 7.7 96 35-136 43-197 (336)
355 cd03115 SRP The signal recogni 98.1 5.3E-05 1.1E-09 54.3 10.1 91 40-137 2-153 (173)
356 PRK10416 signal recognition pa 98.1 3.8E-05 8.3E-10 60.5 9.7 25 36-60 112-136 (318)
357 KOG0464|consensus 98.1 1.3E-06 2.8E-11 70.1 1.4 109 35-148 34-182 (753)
358 PRK14722 flhF flagellar biosyn 98.1 4.8E-05 1E-09 61.1 10.3 25 36-60 135-159 (374)
359 COG0012 Predicted GTPase, prob 98.1 1.5E-05 3.3E-10 63.2 6.9 63 38-100 2-108 (372)
360 cd01859 MJ1464 MJ1464. This f 98.0 7E-06 1.5E-10 57.9 4.6 26 35-60 98-123 (156)
361 cd01856 YlqF YlqF. Proteins o 98.0 9.1E-06 2E-10 58.3 4.7 25 36-60 113-137 (171)
362 cd03114 ArgK-like The function 98.0 6.7E-05 1.5E-09 52.7 8.5 20 41-60 2-21 (148)
363 TIGR03596 GTPase_YlqF ribosome 98.0 1E-05 2.2E-10 62.6 4.6 40 36-76 116-173 (276)
364 KOG1486|consensus 98.0 5E-05 1.1E-09 57.4 8.0 80 36-115 60-166 (364)
365 PF02492 cobW: CobW/HypB/UreG, 98.0 3.7E-05 8E-10 55.6 7.2 91 41-137 3-155 (178)
366 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.2E-05 2.6E-10 62.6 4.6 41 36-76 119-176 (287)
367 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.6E-05 5.6E-10 54.2 5.9 48 85-137 7-56 (141)
368 KOG1491|consensus 97.9 3.5E-05 7.5E-10 60.4 6.9 67 35-101 17-126 (391)
369 cd01849 YlqF_related_GTPase Yl 97.9 1.7E-05 3.6E-10 56.0 4.4 25 36-60 98-122 (155)
370 cd01849 YlqF_related_GTPase Yl 97.9 4.3E-05 9.4E-10 53.9 6.4 73 91-168 1-83 (155)
371 KOG1534|consensus 97.9 4.5E-05 9.8E-10 56.2 6.5 110 38-148 3-189 (273)
372 PF06858 NOG1: Nucleolar GTP-b 97.9 3.8E-05 8.3E-10 44.7 4.9 44 89-134 13-58 (58)
373 PF03193 DUF258: Protein of un 97.9 5.5E-06 1.2E-10 58.9 1.6 22 39-60 36-57 (161)
374 PRK14721 flhF flagellar biosyn 97.9 8.2E-05 1.8E-09 60.6 8.6 24 37-60 190-213 (420)
375 cd01855 YqeH YqeH. YqeH is an 97.9 1.5E-05 3.2E-10 58.1 3.7 24 37-60 126-149 (190)
376 PRK11889 flhF flagellar biosyn 97.9 0.00033 7.2E-09 56.7 11.6 24 37-60 240-263 (436)
377 KOG2486|consensus 97.9 3.2E-05 6.9E-10 59.1 5.5 128 35-167 133-313 (320)
378 TIGR00959 ffh signal recogniti 97.8 0.00019 4.2E-09 58.7 10.1 24 36-59 97-120 (428)
379 PRK00771 signal recognition pa 97.8 0.00015 3.3E-09 59.5 9.5 25 36-60 93-117 (437)
380 KOG0448|consensus 97.8 0.00016 3.4E-09 61.3 9.6 98 35-137 106-275 (749)
381 KOG1143|consensus 97.8 5.1E-05 1.1E-09 60.4 6.4 98 38-140 167-320 (591)
382 KOG0780|consensus 97.8 0.00016 3.5E-09 57.7 9.0 107 35-141 98-287 (483)
383 COG0541 Ffh Signal recognition 97.8 0.00023 4.9E-09 57.7 9.9 80 35-114 97-237 (451)
384 PRK10867 signal recognition pa 97.8 0.00026 5.5E-09 58.1 10.3 25 36-60 98-122 (433)
385 KOG0460|consensus 97.8 0.00018 3.9E-09 56.7 8.8 98 35-137 51-184 (449)
386 COG1161 Predicted GTPases [Gen 97.8 3.3E-05 7.2E-10 61.0 5.0 42 35-76 129-187 (322)
387 cd01851 GBP Guanylate-binding 97.8 0.00025 5.5E-09 53.2 9.4 69 35-103 4-105 (224)
388 COG3640 CooC CO dehydrogenase 97.8 0.00026 5.7E-09 53.0 9.0 45 87-136 153-198 (255)
389 PRK12288 GTPase RsgA; Reviewed 97.8 3.1E-05 6.7E-10 61.8 4.3 21 40-60 207-227 (347)
390 TIGR03596 GTPase_YlqF ribosome 97.8 6.8E-05 1.5E-09 58.0 6.2 80 82-168 14-101 (276)
391 PRK11537 putative GTP-binding 97.8 0.00018 3.9E-09 56.8 8.3 74 66-148 91-173 (318)
392 TIGR00092 GTP-binding protein 97.7 0.00015 3.2E-09 58.1 7.7 62 39-100 3-108 (368)
393 cd00009 AAA The AAA+ (ATPases 97.7 0.00047 1E-08 46.9 9.4 24 37-60 18-41 (151)
394 COG1419 FlhF Flagellar GTP-bin 97.7 0.0004 8.7E-09 56.0 9.5 96 36-138 201-353 (407)
395 PF13401 AAA_22: AAA domain; P 97.7 0.0003 6.6E-09 47.7 7.8 91 38-132 4-125 (131)
396 KOG0465|consensus 97.7 6.3E-05 1.4E-09 62.9 5.0 101 36-141 37-174 (721)
397 PRK12724 flagellar biosynthesi 97.7 0.00029 6.3E-09 57.3 8.6 23 38-60 223-245 (432)
398 PRK14723 flhF flagellar biosyn 97.7 0.00036 7.7E-09 60.7 9.5 23 38-60 185-207 (767)
399 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.001 2.2E-08 42.2 9.6 90 41-131 2-99 (99)
400 PRK12727 flagellar biosynthesi 97.6 0.00061 1.3E-08 57.0 10.1 25 36-60 348-372 (559)
401 COG0523 Putative GTPases (G3E 97.6 0.00063 1.4E-08 53.7 9.8 101 41-147 4-169 (323)
402 PRK06995 flhF flagellar biosyn 97.6 0.00034 7.4E-09 58.0 8.6 23 38-60 256-278 (484)
403 TIGR02475 CobW cobalamin biosy 97.6 0.00046 1E-08 55.0 9.1 20 41-60 7-26 (341)
404 PRK12289 GTPase RsgA; Reviewed 97.6 7E-05 1.5E-09 59.8 4.4 21 40-60 174-194 (352)
405 PF05729 NACHT: NACHT domain 97.6 0.00073 1.6E-08 47.4 9.2 90 41-130 3-127 (166)
406 COG3523 IcmF Type VI protein s 97.6 0.00023 4.9E-09 64.4 7.8 96 41-137 128-270 (1188)
407 COG1162 Predicted GTPases [Gen 97.6 7.1E-05 1.5E-09 58.1 4.0 21 40-60 166-186 (301)
408 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00014 3E-09 56.6 5.7 79 83-168 18-104 (287)
409 PF00004 AAA: ATPase family as 97.6 0.00017 3.6E-09 48.8 5.3 20 41-60 1-20 (132)
410 PRK13796 GTPase YqeH; Provisio 97.6 0.00028 6.1E-09 56.8 7.2 82 78-167 58-156 (365)
411 TIGR00157 ribosome small subun 97.6 9.4E-05 2E-09 56.3 4.2 22 39-60 121-142 (245)
412 PRK12726 flagellar biosynthesi 97.6 0.00099 2.2E-08 53.7 9.9 25 36-60 204-228 (407)
413 PRK06731 flhF flagellar biosyn 97.6 0.00075 1.6E-08 52.0 8.9 24 37-60 74-97 (270)
414 PRK05703 flhF flagellar biosyn 97.5 0.0012 2.7E-08 54.1 10.3 21 39-59 222-242 (424)
415 COG1116 TauB ABC-type nitrate/ 97.5 0.00062 1.3E-08 51.4 7.7 24 37-60 28-51 (248)
416 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0011 2.3E-08 48.0 8.8 91 36-131 23-130 (177)
417 cd02042 ParA ParA and ParB of 97.5 0.0028 6.2E-08 41.3 10.1 70 41-113 2-84 (104)
418 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00013 2.9E-09 56.7 4.1 22 39-60 162-183 (287)
419 PF13207 AAA_17: AAA domain; P 97.4 0.00013 2.8E-09 49.0 3.2 21 40-60 1-21 (121)
420 PF13555 AAA_29: P-loop contai 97.4 0.00045 9.8E-09 41.1 5.1 21 40-60 25-45 (62)
421 PRK04195 replication factor C 97.4 0.00038 8.2E-09 58.0 6.3 36 37-72 38-74 (482)
422 COG0552 FtsY Signal recognitio 97.4 0.0011 2.3E-08 52.2 8.1 26 35-60 136-161 (340)
423 PRK08118 topology modulation p 97.4 0.00014 3E-09 52.1 3.0 21 40-60 3-23 (167)
424 KOG0469|consensus 97.4 0.00066 1.4E-08 56.1 7.1 109 35-148 16-178 (842)
425 PRK12723 flagellar biosynthesi 97.4 0.0025 5.5E-08 51.6 10.3 23 37-59 173-195 (388)
426 cd02038 FleN-like FleN is a me 97.4 0.0051 1.1E-07 42.5 10.6 90 42-136 4-110 (139)
427 PRK13796 GTPase YqeH; Provisio 97.4 0.0002 4.3E-09 57.6 3.9 24 37-60 159-182 (365)
428 PTZ00293 thymidine kinase; Pro 97.4 0.0021 4.7E-08 47.7 9.0 88 41-137 7-117 (211)
429 TIGR03597 GTPase_YqeH ribosome 97.4 0.00017 3.7E-09 57.9 3.4 23 38-60 154-176 (360)
430 PRK00098 GTPase RsgA; Reviewed 97.4 0.00022 4.7E-09 55.8 3.9 23 38-60 164-186 (298)
431 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.0007 1.5E-08 50.4 6.5 40 35-74 35-75 (226)
432 PF09547 Spore_IV_A: Stage IV 97.3 0.0035 7.6E-08 51.0 10.6 23 38-60 17-39 (492)
433 PF13173 AAA_14: AAA domain 97.3 0.0013 2.7E-08 44.9 7.2 21 40-60 4-24 (128)
434 PF13671 AAA_33: AAA domain; P 97.3 0.00019 4E-09 49.5 3.0 20 41-60 2-21 (143)
435 PRK07261 topology modulation p 97.3 0.00018 3.8E-09 51.7 3.0 22 39-60 1-22 (171)
436 COG0563 Adk Adenylate kinase a 97.3 0.00019 4.1E-09 52.0 3.0 22 39-60 1-22 (178)
437 PF05621 TniB: Bacterial TniB 97.3 0.0017 3.7E-08 50.6 8.3 98 32-132 55-189 (302)
438 cd01120 RecA-like_NTPases RecA 97.3 0.0015 3.2E-08 45.5 7.5 20 41-60 2-21 (165)
439 KOG0057|consensus 97.3 0.0019 4.1E-08 53.8 8.7 26 35-60 375-400 (591)
440 COG4525 TauB ABC-type taurine 97.3 0.0023 5.1E-08 47.0 8.1 23 38-60 31-53 (259)
441 COG1126 GlnQ ABC-type polar am 97.2 0.00042 9.2E-09 51.4 4.0 26 35-60 25-50 (240)
442 PF05673 DUF815: Protein of un 97.2 0.0029 6.3E-08 47.9 8.5 66 32-99 46-115 (249)
443 KOG0054|consensus 97.2 0.0013 2.8E-08 60.5 7.3 26 35-60 544-569 (1381)
444 PF03266 NTPase_1: NTPase; In 97.2 0.00084 1.8E-08 48.2 5.0 21 40-60 1-21 (168)
445 PF13521 AAA_28: AAA domain; P 97.2 0.00027 5.9E-09 50.1 2.5 21 40-60 1-21 (163)
446 KOG1533|consensus 97.2 0.00041 8.8E-09 52.0 3.4 22 39-60 3-24 (290)
447 PRK01889 GTPase RsgA; Reviewed 97.2 0.0023 4.9E-08 51.4 7.9 76 87-166 110-193 (356)
448 PRK08727 hypothetical protein; 97.2 0.0018 4E-08 48.8 7.0 20 41-60 44-63 (233)
449 KOG0466|consensus 97.2 0.00023 5E-09 55.4 2.1 128 35-169 35-240 (466)
450 KOG0459|consensus 97.2 0.00029 6.3E-09 56.6 2.6 101 35-137 76-231 (501)
451 KOG2743|consensus 97.2 0.0038 8.3E-08 48.6 8.6 65 37-101 56-189 (391)
452 TIGR02868 CydC thiol reductant 97.1 0.0023 5E-08 53.8 7.9 26 35-60 358-383 (529)
453 cd01128 rho_factor Transcripti 97.1 0.005 1.1E-07 47.0 8.9 26 35-60 13-38 (249)
454 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.0032 6.9E-08 48.0 7.7 24 37-60 29-52 (254)
455 PRK06217 hypothetical protein; 97.1 0.0005 1.1E-08 49.8 3.0 22 39-60 2-23 (183)
456 PRK05642 DNA replication initi 97.1 0.0022 4.8E-08 48.4 6.5 93 39-133 46-140 (234)
457 PF03205 MobB: Molybdopterin g 97.1 0.0025 5.5E-08 44.3 6.3 59 40-99 2-67 (140)
458 PRK05416 glmZ(sRNA)-inactivati 97.0 0.0059 1.3E-07 47.6 8.9 73 39-116 7-81 (288)
459 PF01580 FtsK_SpoIIIE: FtsK/Sp 97.0 0.0019 4.1E-08 47.5 5.8 37 40-76 40-81 (205)
460 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0073 1.6E-07 42.0 8.5 24 37-60 25-48 (144)
461 KOG3859|consensus 97.0 0.002 4.4E-08 49.6 5.9 41 35-75 39-104 (406)
462 PF00005 ABC_tran: ABC transpo 97.0 0.00072 1.6E-08 46.3 3.3 24 37-60 10-33 (137)
463 PF13238 AAA_18: AAA domain; P 97.0 0.00069 1.5E-08 45.5 2.9 20 41-60 1-20 (129)
464 smart00382 AAA ATPases associa 97.0 0.00074 1.6E-08 45.4 3.1 22 39-60 3-24 (148)
465 PRK08084 DNA replication initi 97.0 0.0048 1E-07 46.6 7.8 22 39-60 46-67 (235)
466 COG3839 MalK ABC-type sugar tr 97.0 0.00082 1.8E-08 53.3 3.7 21 40-60 31-51 (338)
467 PLN03025 replication factor C 97.0 0.0077 1.7E-07 47.5 9.2 94 39-134 35-140 (319)
468 KOG0781|consensus 97.0 0.0037 8E-08 51.4 7.3 104 33-137 373-544 (587)
469 cd02019 NK Nucleoside/nucleoti 97.0 0.00081 1.7E-08 40.8 2.8 20 41-60 2-21 (69)
470 PRK00411 cdc6 cell division co 97.0 0.011 2.5E-07 47.7 10.2 24 37-60 54-77 (394)
471 cd03216 ABC_Carb_Monos_I This 97.0 0.013 2.8E-07 41.6 9.4 25 36-60 24-48 (163)
472 PRK10078 ribose 1,5-bisphospho 96.9 0.00076 1.7E-08 49.0 3.1 21 40-60 4-24 (186)
473 PRK06893 DNA replication initi 96.9 0.0031 6.8E-08 47.4 6.5 22 39-60 40-61 (229)
474 cd03111 CpaE_like This protein 96.9 0.02 4.3E-07 37.7 9.6 84 45-132 7-106 (106)
475 TIGR00235 udk uridine kinase. 96.9 0.001 2.2E-08 49.2 3.4 26 35-60 3-28 (207)
476 cd00071 GMPK Guanosine monopho 96.9 0.00084 1.8E-08 46.4 2.8 20 41-60 2-21 (137)
477 PRK03839 putative kinase; Prov 96.9 0.00086 1.9E-08 48.3 2.9 21 40-60 2-22 (180)
478 cd02036 MinD Bacterial cell di 96.9 0.047 1E-06 38.8 12.0 90 43-138 5-129 (179)
479 PRK10751 molybdopterin-guanine 96.9 0.004 8.8E-08 44.8 6.3 23 38-60 6-28 (173)
480 TIGR02237 recomb_radB DNA repa 96.9 0.0092 2E-07 43.9 8.5 69 37-105 11-82 (209)
481 COG1136 SalX ABC-type antimicr 96.9 0.0008 1.7E-08 50.4 2.8 26 37-62 30-55 (226)
482 PRK14738 gmk guanylate kinase; 96.9 0.001 2.2E-08 49.2 3.4 26 35-60 10-35 (206)
483 TIGR02322 phosphon_PhnN phosph 96.9 0.00086 1.9E-08 48.2 2.7 21 40-60 3-23 (179)
484 KOG0066|consensus 96.9 0.014 3.1E-07 47.9 9.8 40 12-60 596-635 (807)
485 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.019 4E-07 40.4 9.4 24 37-60 24-47 (157)
486 TIGR03263 guanyl_kin guanylate 96.8 0.001 2.2E-08 47.8 2.9 21 40-60 3-23 (180)
487 PRK08116 hypothetical protein; 96.8 0.0062 1.3E-07 47.0 7.4 93 39-133 115-221 (268)
488 TIGR00174 miaA tRNA isopenteny 96.8 0.0079 1.7E-07 46.8 7.9 20 41-60 2-21 (287)
489 PRK12377 putative replication 96.8 0.0047 1E-07 47.1 6.6 93 38-132 101-205 (248)
490 cd01124 KaiC KaiC is a circadi 96.8 0.009 1.9E-07 42.9 7.9 20 41-60 2-21 (187)
491 COG3638 ABC-type phosphate/pho 96.8 0.001 2.2E-08 50.0 2.8 22 39-60 31-52 (258)
492 COG1117 PstB ABC-type phosphat 96.8 0.00088 1.9E-08 49.8 2.4 24 37-60 32-55 (253)
493 PRK11174 cysteine/glutathione 96.8 0.0066 1.4E-07 51.8 8.1 26 35-60 373-398 (588)
494 PRK11176 lipid transporter ATP 96.8 0.0066 1.4E-07 51.7 8.0 25 36-60 367-391 (582)
495 PF07728 AAA_5: AAA domain (dy 96.8 0.0013 2.9E-08 45.1 3.2 21 40-60 1-21 (139)
496 PRK05480 uridine/cytidine kina 96.8 0.0014 2.9E-08 48.5 3.4 25 36-60 4-28 (209)
497 COG3840 ThiQ ABC-type thiamine 96.8 0.0022 4.9E-08 46.6 4.2 41 36-76 23-66 (231)
498 PRK14530 adenylate kinase; Pro 96.8 0.0012 2.6E-08 49.1 3.0 21 40-60 5-25 (215)
499 PF04665 Pox_A32: Poxvirus A32 96.8 0.0013 2.8E-08 49.8 3.2 26 35-60 10-35 (241)
500 PRK14532 adenylate kinase; Pro 96.8 0.0013 2.7E-08 47.8 2.9 22 39-60 1-22 (188)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.1e-34 Score=206.51 Aligned_cols=135 Identities=23% Similarity=0.388 Sum_probs=123.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||+|+.||.. ++++.+++++|||+||++|+++...||++||+|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 56789999999999999999999998 778899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKF 162 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f 162 (171)
|+|||+++.+||+.+..|+.++-+. ...++|.++||||+|+.+ .++.++..++. ++||+.+.||+++|
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence 9999999999999999999999544 456799999999999987 57777776664 88999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
..++..+.
T Consensus 165 ~~la~~lk 172 (205)
T KOG0084|consen 165 LTLAKELK 172 (205)
T ss_pred HHHHHHHH
Confidence 99998764
No 2
>KOG0092|consensus
Probab=100.00 E-value=1.3e-32 Score=195.30 Aligned_cols=134 Identities=21% Similarity=0.319 Sum_probs=122.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
...+|++++|+.+||||||+.|+.. ++...+++.||||+||++|+++.+.|++++++.|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4689999999999999999999997 4556799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||+++.+||..++.|+.++-++.. +++-+.+||||+|+.+ .++.++...+. |+|||+|.||.++|..
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999965543 7888889999999988 78888888887 7799999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
|++.+.
T Consensus 162 Ia~~lp 167 (200)
T KOG0092|consen 162 IAEKLP 167 (200)
T ss_pred HHHhcc
Confidence 998764
No 3
>KOG0098|consensus
Probab=100.00 E-value=4.7e-32 Score=191.37 Aligned_cols=136 Identities=22% Similarity=0.345 Sum_probs=126.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
....+|++++|+.|||||+|+.+|.. ++...+++++|||+||+.|++...+||+.+.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45789999999999999999999998 788899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++..+||+.+..|+.++.++ ..+++-++++|||+|+.. +++.+|.+.+. ++||++++||+++|.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 9999999999999999999999654 468999999999999976 78999998887 889999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
..+.+||+
T Consensus 162 nta~~Iy~ 169 (216)
T KOG0098|consen 162 NTAKEIYR 169 (216)
T ss_pred HHHHHHHH
Confidence 99999873
No 4
>KOG0078|consensus
Probab=100.00 E-value=6.9e-32 Score=194.52 Aligned_cols=136 Identities=21% Similarity=0.358 Sum_probs=125.2
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
++...+||+++|++|||||+++.+|.. .++..+.+++|||+||++|+++..+|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 467889999999999999999999998 67778999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++|||+++..||+.+..|+..+- +...+++|.++||||+|+.+ .++.+..+.+. |+||++|.||.++|
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~-e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNID-EHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHH-hhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence 999999999999999999999984 44556999999999999987 68888877776 88999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
..+++.|+
T Consensus 167 ~~La~~i~ 174 (207)
T KOG0078|consen 167 LSLARDIL 174 (207)
T ss_pred HHHHHHHH
Confidence 99999886
No 5
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=9e-31 Score=191.40 Aligned_cols=133 Identities=20% Similarity=0.328 Sum_probs=118.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
...+||+++|+.|||||||++++.. .++..+.+++||++|+++|..+++.+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999997 2334578899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++.+|+.+..|+.++.+. .++.|+++||||.|+.+ .++.++++.+. ++||++|.||+++|++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 999999999999999999999654 36899999999999975 56777777665 7799999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.++
T Consensus 162 l~~~i~ 167 (189)
T cd04121 162 LARIVL 167 (189)
T ss_pred HHHHHH
Confidence 998775
No 6
>KOG0094|consensus
Probab=99.97 E-value=3.2e-31 Score=188.49 Aligned_cols=135 Identities=18% Similarity=0.327 Sum_probs=121.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+|++++|+.+|||||||.||.. +....+.+++|||+|||+|+.+.++|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 55679999999999999999999998 455678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
|.|||+++.+||+....|+.+++.+....++-+++||||.||.+ .++.+|..... ++||+.|.||+++|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 99999999999999999999999988777799999999999987 45666555443 779999999999999
Q ss_pred HHHHHH
Q psy11510 164 VLLNEV 169 (171)
Q Consensus 164 ~l~~~i 169 (171)
.++..+
T Consensus 179 rIaa~l 184 (221)
T KOG0094|consen 179 RIAAAL 184 (221)
T ss_pred HHHHhc
Confidence 988654
No 7
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.3e-30 Score=188.41 Aligned_cols=136 Identities=34% Similarity=0.598 Sum_probs=118.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
++.+||+++|++|||||||++++.. .....+.+.+||++|++.++.+|+.+++++|++++|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 4579999999999999999999964 234567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
+++.++++..+|+..+++....+++|+++|+||+|+.+..+.+++.+.+ ++||++|.|++++|++++
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999998876555689999999999998776666665543 579999999999999998
Q ss_pred HHHhC
Q psy11510 167 NEVSN 171 (171)
Q Consensus 167 ~~i~~ 171 (171)
+.+.|
T Consensus 171 ~~~~~ 175 (175)
T smart00177 171 NNLKN 175 (175)
T ss_pred HHhcC
Confidence 87654
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=1.3e-30 Score=192.29 Aligned_cols=131 Identities=23% Similarity=0.392 Sum_probs=112.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+.|+++|+.|||||||++++.. .++..+.+++||++|+++|+.+++.|++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999997 2334588899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~ 166 (171)
|+++++||+.+..|+..+. ....+++|+++|+||+|+.+ .+..++..++. ++||++|.||+++|++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988764 33446899999999999964 45555554432 789999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 160 ~~~~ 163 (202)
T cd04120 160 DDIL 163 (202)
T ss_pred HHHH
Confidence 8765
No 9
>KOG0080|consensus
Probab=99.97 E-value=3.4e-31 Score=183.01 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=125.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
.-..+||++||.+|+|||||+.+|.. +++.+.++.+|||+||++|+++.++||+.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 45679999999999999999999997 678889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
|+|||++..++|..+..|+.++-.....+++-.++|+||+|... .++.+|..++. |+||++.+||.++|+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 99999999999999999999996666567888999999999983 78888888876 889999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
.++..|++
T Consensus 168 elveKIi~ 175 (209)
T KOG0080|consen 168 ELVEKIIE 175 (209)
T ss_pred HHHHHHhc
Confidence 99998874
No 10
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.5e-30 Score=187.87 Aligned_cols=136 Identities=35% Similarity=0.606 Sum_probs=120.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
++.+||+++|++|||||||++++.. .+...+.+++||++|++.++.+|+.+++++|++|+|+|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~ 94 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 5679999999999999999999975 344567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
++++++.+...++..+++....+++|+++|+||+|+++..+.+++.+.+ ++||++|+|+.++|++++
T Consensus 95 s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 9999999999888888776555789999999999999877777766543 469999999999999999
Q ss_pred HHHhC
Q psy11510 167 NEVSN 171 (171)
Q Consensus 167 ~~i~~ 171 (171)
+.+.+
T Consensus 175 ~~~~~ 179 (181)
T PLN00223 175 NNIAN 179 (181)
T ss_pred HHHhh
Confidence 88764
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=2.1e-30 Score=188.41 Aligned_cols=135 Identities=17% Similarity=0.233 Sum_probs=117.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
++..+||+++|+.|||||||++++.. ++...+.+++|||+|++.|..+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35678999999999999999999987 3455678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~ 150 (171)
+|||++++.||+.+ ..|+..+.+. .++.|+++||||+|+.+ .++.++..++. |+
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999997 7888888553 36799999999999853 36666666655 77
Q ss_pred hhccCCC-HHHHHHHHHHHHhC
Q psy11510 151 ATKVKLN-KQSKFQVLLNEVSN 171 (171)
Q Consensus 151 sa~~~~~-v~~~f~~l~~~i~~ 171 (171)
||++|.| |+++|..+++.++|
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 160 SALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHhc
Confidence 9999999 99999999998765
No 12
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2.9e-30 Score=185.41 Aligned_cols=132 Identities=36% Similarity=0.628 Sum_probs=116.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
++.+||+++|++|||||||++++.. .....+.+++||++|+++++.+|+.+++++|++++|||+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~ 86 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 5679999999999999999999975 234568899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
+++.+|++...|+.+++.....+++|+++|+||+|+.+.++.+++.+.+ ++||++|.|++++|++|+
T Consensus 87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 9999999999999888776555689999999999998777777776653 679999999999999987
Q ss_pred H
Q psy11510 167 N 167 (171)
Q Consensus 167 ~ 167 (171)
+
T Consensus 167 ~ 167 (168)
T cd04149 167 S 167 (168)
T ss_pred c
Confidence 5
No 13
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=6.4e-30 Score=187.20 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=111.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
..+||+++|+.|||||||++++.. +++..+.+++|||+|+++|+.+++.+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 458999999999999999999997 334457799999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hhhh
Q psy11510 97 VDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKAT 152 (171)
Q Consensus 97 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa 152 (171)
||++++.||+.+. .|+..+... .+++|+++||||+|+.+. +..++...+. ++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 9999999999997 577766443 358999999999999652 3333433332 7799
Q ss_pred ccCCCHHHHHHHHHHHHh
Q psy11510 153 KVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 153 ~~~~~v~~~f~~l~~~i~ 170 (171)
++|.||+++|+.+++.++
T Consensus 160 k~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998775
No 14
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=8.5e-30 Score=184.20 Aligned_cols=141 Identities=33% Similarity=0.598 Sum_probs=128.7
Q ss_pred cccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 29 LRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 29 ~~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
+++....++.+||+++|+.||||||+++++.. +...+..+.+||.+|+..+++.|+.|++++|+
T Consensus 5 ~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 5 LSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp HHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred HHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccce
Confidence 34455568999999999999999999999997 55678899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNK 158 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v 158 (171)
+|||+|+++.+++.+..+.+..++......++|+++++||+|++++.+.+++.+.+ .+||.+|+|+
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 99999999999999999999999998777899999999999999988988888776 4599999999
Q ss_pred HHHHHHHHHHH
Q psy11510 159 QSKFQVLLNEV 169 (171)
Q Consensus 159 ~~~f~~l~~~i 169 (171)
.+.|+||.++|
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 15
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=6.3e-30 Score=184.32 Aligned_cols=133 Identities=18% Similarity=0.274 Sum_probs=115.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.+||+++|.+|||||||++++.. .++..+.+++||++|++.++.+++.+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 47999999999999999999986 3344578899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++.+|+.+.+|+..+.+....+++|+++|+||+|+.+ .++.++..++. ++||++|.||+++|+++++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999998877775543446899999999999865 46666666554 6799999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.++
T Consensus 162 ~~~ 164 (172)
T cd04141 162 EIR 164 (172)
T ss_pred HHH
Confidence 775
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=6.1e-30 Score=185.08 Aligned_cols=130 Identities=15% Similarity=0.235 Sum_probs=113.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|||||||+.++.. .++..+++.+|||+|+++|+.+++.+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 6999999999999999999997 34456889999999999999999999999999999999
Q ss_pred CCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC------------CCHHHHHHHH---------HhhhccCC
Q psy11510 99 SADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA------------LTPEDIKNVS---------EKATKVKL 156 (171)
Q Consensus 99 ~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~---------~~sa~~~~ 156 (171)
++++.||+.+ ..|+..+.+.. ++.|+++||||+|+.+. +..++...+. |+||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 68998885442 57999999999999542 5566655544 77999999
Q ss_pred CHHHHHHHHHHHHh
Q psy11510 157 NKQSKFQVLLNEVS 170 (171)
Q Consensus 157 ~v~~~f~~l~~~i~ 170 (171)
||+++|+.+++.++
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998765
No 17
>KOG0095|consensus
Probab=99.97 E-value=3.8e-30 Score=176.07 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=118.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
.+..+||+++|+.|+|||+|+++|.. ++++.+++++|||+||++|+++.++|++.+|++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 45679999999999999999999997 678899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHH--------HHhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNV--------SEKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~--------~~~sa~~~~~v~~~f~ 163 (171)
|+|||++=..+|+.+.+|+.++-+ ....++--|+||||.|+.+ +++..-.+++ +++||+..+||+.+|.
T Consensus 84 ilvydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999999999944 4456788899999999987 4555444444 4889999999999999
Q ss_pred HHHHHH
Q psy11510 164 VLLNEV 169 (171)
Q Consensus 164 ~l~~~i 169 (171)
+++-.+
T Consensus 163 ~~a~rl 168 (213)
T KOG0095|consen 163 DLACRL 168 (213)
T ss_pred HHHHHH
Confidence 987554
No 18
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.8e-29 Score=180.53 Aligned_cols=133 Identities=20% Similarity=0.339 Sum_probs=115.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
.+||+++|++|||||||++++.. .++..+.+.+||++|++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999986 233456789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
||++++.+|+.+..|+..+... ..++.|+++|+||+|+.. .++.+++.++. ++||++|.|++++|..++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999887543 346799999999999976 35666666665 569999999999999999
Q ss_pred HHHhC
Q psy11510 167 NEVSN 171 (171)
Q Consensus 167 ~~i~~ 171 (171)
+.+++
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 88763
No 19
>KOG0087|consensus
Probab=99.97 E-value=2.7e-30 Score=185.83 Aligned_cols=136 Identities=23% Similarity=0.359 Sum_probs=125.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++++|||-|+.||.. ++++.++.+||||+||++|+.+.++|++.+.+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 55789999999999999999999998 778889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++...+|+.+.+|+.++..+ ..+++++++||||+||.. +++.++...+. ++||..+.||+.+|+
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 9999999999999999999999765 457999999999999987 78888887776 679999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
.++.+|++
T Consensus 170 ~~l~~I~~ 177 (222)
T KOG0087|consen 170 RVLTEIYK 177 (222)
T ss_pred HHHHHHHH
Confidence 99999874
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.1e-29 Score=184.02 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=113.4
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
++||+++|+.|||||||++++.. ++...+.+++|||+|++.|..+++.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999987 2345678999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhc
Q psy11510 98 DSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATK 153 (171)
Q Consensus 98 d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~ 153 (171)
|++++.||+.+ ..|+..+.+. .++.|+++||||+|+.+ +++.++..++. |+||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 7888888554 36899999999999853 36666666655 67999
Q ss_pred cCCC-HHHHHHHHHHHHhC
Q psy11510 154 VKLN-KQSKFQVLLNEVSN 171 (171)
Q Consensus 154 ~~~~-v~~~f~~l~~~i~~ 171 (171)
+|+| |+++|..+++..++
T Consensus 159 ~~~~~v~~~F~~~~~~~~~ 177 (178)
T cd04131 159 TSEKSVRDIFHVATMACLN 177 (178)
T ss_pred cCCcCHHHHHHHHHHHHhc
Confidence 9995 99999999987653
No 21
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=2.6e-29 Score=178.86 Aligned_cols=129 Identities=35% Similarity=0.612 Sum_probs=111.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 102 (171)
+||+++|.+|||||||++++.. .....+.+.+||++|++++..+|+.+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 5899999999999999999964 234567899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHH
Q psy11510 103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~ 167 (171)
.+|+++.+|+..++......++|+++++||+|+.+....+++.+.. ++||++|.|++++|+++++
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999999999988766555679999999999998766655544433 5699999999999999864
No 22
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.5e-29 Score=182.01 Aligned_cols=135 Identities=34% Similarity=0.593 Sum_probs=117.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
++.+||+++|++|||||||++++.. .+..++.+++||++|+++++.+|+.+++++|++|+|+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~ 94 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS 94 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 5679999999999999999999965 234567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
++++++++...++..++......++|+++|+||+|+++..+.+++.+.+ ++||++|.|++++|++++
T Consensus 95 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 95 NDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 9999999999888888766555679999999999998766666665543 569999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 175 ~~i~ 178 (182)
T PTZ00133 175 ANIK 178 (182)
T ss_pred HHHH
Confidence 8764
No 23
>KOG0093|consensus
Probab=99.97 E-value=2.9e-29 Score=171.12 Aligned_cols=134 Identities=20% Similarity=0.360 Sum_probs=117.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
...|++++|++.+|||||+.++.. -...++.+++|||.|+++|+.+...+++.++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 457999999999999999999998 23356899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
+||+++.++|..++.|..++- ...-.+.|+|+|+||||+.+ .++.+..+.+. |+||+.|.||+++|+.+
T Consensus 100 myDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 999999999999999998884 34456899999999999987 45666655544 88999999999999999
Q ss_pred HHHHhC
Q psy11510 166 LNEVSN 171 (171)
Q Consensus 166 ~~~i~~ 171 (171)
...|++
T Consensus 179 v~~Ic~ 184 (193)
T KOG0093|consen 179 VDIICD 184 (193)
T ss_pred HHHHHH
Confidence 988763
No 24
>KOG0079|consensus
Probab=99.97 E-value=7e-30 Score=174.35 Aligned_cols=132 Identities=23% Similarity=0.377 Sum_probs=120.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
+.++.+++|++|+|||+|+.+|.. +++..++++|||++|+++|+.+...|++..|++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 456889999999999999999987 67888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|||+++.+||....+|+.++.++. +.+|-++||||+|.++ .+..++.+.+. |+|++.++|++.+|..|
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ci 164 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCI 164 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHH
Confidence 999999999999999999996653 5899999999999998 56777777776 88999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
.++++
T Consensus 165 t~qvl 169 (198)
T KOG0079|consen 165 TKQVL 169 (198)
T ss_pred HHHHH
Confidence 88775
No 25
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.9e-29 Score=184.31 Aligned_cols=132 Identities=22% Similarity=0.301 Sum_probs=114.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+||+++|++|||||||++++.+ .+ +..+.+.+||++|++++..+++.+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999987 22 4467889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcc---ccCCCeEEEEEeCCCCC--CCCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEE---RLAGATLLVFANKQDIE--GALTPEDIKNVS---------EKATKVKLNKQSKF 162 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~---------~~sa~~~~~v~~~f 162 (171)
||++++.+|+.+..|+..+.... ...++|+++|+||+|+. ..++.+++.++. ++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988775432 23579999999999997 356677766654 56999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+++++.++
T Consensus 161 ~~l~~~l~ 168 (201)
T cd04107 161 RFLVKNIL 168 (201)
T ss_pred HHHHHHHH
Confidence 99998775
No 26
>KOG0394|consensus
Probab=99.96 E-value=1.9e-29 Score=177.83 Aligned_cols=136 Identities=18% Similarity=0.315 Sum_probs=123.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
.+..+||+++|++|+|||||++++.+ ++...+.+++|||+||++|+++...|++.+|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 46689999999999999999999998 666678899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcccc---CCCeEEEEEeCCCCCC----CCCHHHHHHHH---------HhhhccCCC
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERL---AGATLLVFANKQDIEG----ALTPEDIKNVS---------EKATKVKLN 157 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~Dl~~----~~~~~~~~~~~---------~~sa~~~~~ 157 (171)
++|||+.++.+|+.+..|..+++.+... ..-|.+++|||+|+.+ .++......++ |+|||.+.|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 9999999999999999999999876543 3689999999999976 36777788887 889999999
Q ss_pred HHHHHHHHHHHHh
Q psy11510 158 KQSKFQVLLNEVS 170 (171)
Q Consensus 158 v~~~f~~l~~~i~ 170 (171)
|.+.|+.+++..+
T Consensus 166 V~~AFe~ia~~aL 178 (210)
T KOG0394|consen 166 VDEAFEEIARRAL 178 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 27
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=6.8e-29 Score=179.51 Aligned_cols=135 Identities=20% Similarity=0.329 Sum_probs=116.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cc----------cCceEEEEEecCCccchhHHHHH
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IM----------TFRFKLNIWDVGGQKSLRSYWRN 85 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~----------~~~~~~~i~d~~g~~~~~~~~~~ 85 (171)
+.+||+++|++|||||||++++.+ .. ...+.+.+||++|++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 569999999999999999999976 10 23578899999999999999999
Q ss_pred hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC
Q psy11510 86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK 155 (171)
Q Consensus 86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~ 155 (171)
+++++|++++|||++++++|..+..|+..+......++.|+++|+||+|+.+ .++.+++.++. ++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999986654456899999999999965 45656665544 6799999
Q ss_pred CCHHHHHHHHHHHHhC
Q psy11510 156 LNKQSKFQVLLNEVSN 171 (171)
Q Consensus 156 ~~v~~~f~~l~~~i~~ 171 (171)
.|++++|+.+++.+++
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988763
No 28
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=7.5e-29 Score=186.14 Aligned_cols=133 Identities=14% Similarity=0.191 Sum_probs=115.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
...+||+++|+.|||||+|+.++.. +++..+.+.+|||+|++.|..+++.+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 3579999999999999999999986 34456889999999999999999999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510 96 VVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA 151 (171)
Q Consensus 96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s 151 (171)
|||++++.+|+.+ ..|+..+... .++.|+++|+||+|+.+ .++.++..++. ++|
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 7888888543 25789999999999853 36666666665 779
Q ss_pred hccCC-CHHHHHHHHHHHHh
Q psy11510 152 TKVKL-NKQSKFQVLLNEVS 170 (171)
Q Consensus 152 a~~~~-~v~~~f~~l~~~i~ 170 (171)
|++|. ||+++|..++..++
T Consensus 169 Aktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHH
Confidence 99998 89999999998765
No 29
>KOG0070|consensus
Probab=99.96 E-value=1.6e-29 Score=178.79 Aligned_cols=138 Identities=37% Similarity=0.595 Sum_probs=128.8
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
....+.++|+++|..++||||+++++.. +..+++.+.+||.+||+++++.|+.|+++++++|||
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 3478899999999999999999999997 667799999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~ 163 (171)
+|+++.+++.+.++.+..++.+....+.|+++++||+|++++.+..++.+.+ .++|.+|+|+.+.++
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~ 171 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLD 171 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHH
Confidence 9999999999999999999998877899999999999999999998888887 568999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
++.+.+-
T Consensus 172 wl~~~~~ 178 (181)
T KOG0070|consen 172 WLSNNLK 178 (181)
T ss_pred HHHHHHh
Confidence 9988763
No 30
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=8.1e-29 Score=177.88 Aligned_cols=131 Identities=34% Similarity=0.578 Sum_probs=115.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 103 (171)
||+++|++|||||||++++.+ ....++.+.+||+||++.+...|..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 689999999999999999987 3345678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCHHHHHHHHHHHH
Q psy11510 104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v~~~f~~l~~~i 169 (171)
++.++..|+..+++.....+.|+++|+||+|+.++.+.+++.+.+ ++||++|.|++++|+++++.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 999999999999876555679999999999998877777665542 569999999999999999876
Q ss_pred h
Q psy11510 170 S 170 (171)
Q Consensus 170 ~ 170 (171)
.
T Consensus 161 ~ 161 (169)
T cd04158 161 V 161 (169)
T ss_pred h
Confidence 4
No 31
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=7.7e-29 Score=176.10 Aligned_cols=131 Identities=18% Similarity=0.291 Sum_probs=112.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|||||||++++.. .++..+.+.+||++|++++..+++.+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999986 23335678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
++++.+|+.+..|+..+.+....+++|+++|+||+|+.+ .+..++...+. ++||++|.|+.++|+++++.
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 999999999999999887655556899999999999964 34444433332 67999999999999999886
Q ss_pred H
Q psy11510 169 V 169 (171)
Q Consensus 169 i 169 (171)
+
T Consensus 162 ~ 162 (163)
T cd04136 162 I 162 (163)
T ss_pred c
Confidence 5
No 32
>KOG0073|consensus
Probab=99.96 E-value=4.6e-29 Score=172.78 Aligned_cols=142 Identities=48% Similarity=0.749 Sum_probs=128.5
Q ss_pred cccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 29 LRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 29 ~~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
+++.....+.++|+++|..|+||||++++|.+ ...+...+++||++||..+++.|+.||..+|+
T Consensus 7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 44445466799999999999999999999998 56678899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNK 158 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v 158 (171)
+|+|+|++++.+|++....+..++.+....+.|+++++||+|++.+.+.+++...+ .+|+.+|+++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999999999999999999999998888999999999999999888888877655 4589999999
Q ss_pred HHHHHHHHHHHh
Q psy11510 159 QSKFQVLLNEVS 170 (171)
Q Consensus 159 ~~~f~~l~~~i~ 170 (171)
.+-|+++++.+.
T Consensus 167 ~~gidWL~~~l~ 178 (185)
T KOG0073|consen 167 LEGIDWLCDDLM 178 (185)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 33
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=1e-28 Score=180.39 Aligned_cols=135 Identities=17% Similarity=0.281 Sum_probs=115.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
.+.+||+++|++|||||||++++.. +++..+.+++||++|++++..++..+++++|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 4579999999999999999999987 23445678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|||++++++|+.+..|+..+.+....++.|+++|+||+|+.+ .+..++..... ++||++|.|++++|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999887655556899999999999965 34544443332 77999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 163 ~~~l~ 167 (189)
T PTZ00369 163 VREIR 167 (189)
T ss_pred HHHHH
Confidence 98764
No 34
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=9.6e-29 Score=176.22 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=113.4
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
++||+++|.+|||||||++++.. .++..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999985 2334567889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|+++..+|+.+.+|+..+......++.|+++|+||+|+.+ ..+.++...+. ++||++|.|++++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999999997765557899999999999975 23444333332 6799999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.+-
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 763
No 35
>KOG0086|consensus
Probab=99.96 E-value=5.5e-29 Score=170.94 Aligned_cols=136 Identities=18% Similarity=0.275 Sum_probs=121.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
....+|++++|+.|.|||+|+.+|.. +..+.++++||||+||++|++....|++.+.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 45679999999999999999999997 556789999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||+++.++|+.+-+|+.+... ...+++-+++++||.|+.+ .+...+..++. |+|+++|+||+++|-
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 999999999999999999999854 3457899999999999976 46666666654 889999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
..++.|++
T Consensus 165 ~c~~tIl~ 172 (214)
T KOG0086|consen 165 KCARTILN 172 (214)
T ss_pred HHHHHHHH
Confidence 99998874
No 36
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=1.8e-28 Score=173.66 Aligned_cols=132 Identities=15% Similarity=0.266 Sum_probs=112.1
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.+||+++|++|||||||++++.+ ++...+.+.+||++|++++..+++.+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 36999999999999999999987 2223456889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
|+++..+|+.+..|+..+.+.....+.|+++|+||+|+.+ ....+++.+.. ++||++|.|++++|+++++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999998887655556899999999999976 33444444443 66999999999999999876
Q ss_pred H
Q psy11510 169 V 169 (171)
Q Consensus 169 i 169 (171)
+
T Consensus 161 ~ 161 (162)
T cd04138 161 I 161 (162)
T ss_pred h
Confidence 4
No 37
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.7e-28 Score=183.32 Aligned_cols=133 Identities=14% Similarity=0.250 Sum_probs=114.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
....+||+++|.+|||||||++++.. .+...+.+.+||++|+++|..++..+++++|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 46789999999999999999999875 233457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHH--------HHhhhccCCCHHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNV--------SEKATKVKLNKQSKFQV 164 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~--------~~~sa~~~~~v~~~f~~ 164 (171)
++|||++++.+|+.+..|+..+.+. .++.|+++||||+|+.+ .+..+++ .+ .++||++|.|++++|++
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 9999999999999999999998654 36899999999999965 3344444 32 27799999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.++
T Consensus 167 l~~~~~ 172 (219)
T PLN03071 167 LARKLA 172 (219)
T ss_pred HHHHHH
Confidence 998875
No 38
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2.1e-28 Score=176.19 Aligned_cols=138 Identities=52% Similarity=0.793 Sum_probs=117.6
Q ss_pred ccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 30 RHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 30 ~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
++.......+||+++|++|||||||++++.+ ...+.+.+.+||+||++.++.++..+++++|++
T Consensus 6 ~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 6 RKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred hhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3444456789999999999999999999987 223456789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQS 160 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~ 160 (171)
++|+|++++.+|++...|+..++......++|+++|+||+|+.+....+++.+.+ ++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 9999999999999999999888765555789999999999998766666655543 679999999999
Q ss_pred HHHHHHH
Q psy11510 161 KFQVLLN 167 (171)
Q Consensus 161 ~f~~l~~ 167 (171)
+|+++++
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9999874
No 39
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1.6e-28 Score=177.50 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=108.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.+||+++|+.|||||||++++.. .+...+.+++||++|++++..++..+++++|++++||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999997 2233478899999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hhhhc
Q psy11510 98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKATK 153 (171)
Q Consensus 98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa~ 153 (171)
|++++++|+.+. .|+..+... .+++|+++|+||+|+.+. +..+++.++. ++||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 999999999997 477777443 357999999999998542 3344433332 67999
Q ss_pred cCCCHHHHHHHHHHHHh
Q psy11510 154 VKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~i~ 170 (171)
+|.|++++|+.++++.+
T Consensus 159 tg~~v~~~f~~~~~~~~ 175 (175)
T cd01874 159 TQKGLKNVFDEAILAAL 175 (175)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998653
No 40
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=1.6e-28 Score=175.95 Aligned_cols=130 Identities=17% Similarity=0.266 Sum_probs=109.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.. .+...+.+.+||++|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999975 1234578899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
|++++++|+.+..|+..+.... .++|+++|+||+|+.+.....+...+ .++||++|.|++++|+++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 9999999999999999986553 38999999999999753222222222 2779999999999999999887
Q ss_pred h
Q psy11510 170 S 170 (171)
Q Consensus 170 ~ 170 (171)
+
T Consensus 159 ~ 159 (166)
T cd00877 159 L 159 (166)
T ss_pred H
Confidence 5
No 41
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=3.4e-28 Score=174.09 Aligned_cols=134 Identities=21% Similarity=0.390 Sum_probs=115.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+||+++|++|||||||++++.+ ..+..+.+.+||++|++++..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999987 23335788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|||++++++|+.+..|+..+... ...+.|+++|+||+|+.+ .+..++..... ++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988653 346799999999999975 34555554443 66999999999999999
Q ss_pred HHHHhC
Q psy11510 166 LNEVSN 171 (171)
Q Consensus 166 ~~~i~~ 171 (171)
++.+++
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998763
No 42
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=3.8e-28 Score=172.92 Aligned_cols=133 Identities=21% Similarity=0.326 Sum_probs=114.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ ..+..+.+++||++|++.+..+++.+++++|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999987 2334678899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERL----AGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
|++++.+|+.+..|+..+.+.... .+.|+++|+||+|+.+ ..+.++...+. ++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999988765432 5799999999999973 44555554443 669999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
.+++.+++
T Consensus 161 ~l~~~l~~ 168 (168)
T cd04119 161 TLFSSIVD 168 (168)
T ss_pred HHHHHHhC
Confidence 99998764
No 43
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=3.7e-28 Score=172.76 Aligned_cols=133 Identities=18% Similarity=0.301 Sum_probs=113.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+.+||+++|++|+|||||++++.+ .++..+.+++||+||++++..+++.+++++|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 358999999999999999999876 233346789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
||++++.+|+.+..|+..+.+.....+.|+++++||+|+.. .+..++...+. ++||++|.|++++|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887654456899999999999975 24444544443 669999999999999998
Q ss_pred HHH
Q psy11510 167 NEV 169 (171)
Q Consensus 167 ~~i 169 (171)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 753
No 44
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=3.8e-28 Score=173.46 Aligned_cols=133 Identities=21% Similarity=0.363 Sum_probs=113.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
.+||+++|++|||||||++++.+ ..+..+.+++||++|++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 57999999999999999999987 122346789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
||++++++|..+..|+..+... ..++.|+++|+||+|+.. .++.++...+. ++||++|.|+.++|+.++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999988543 235799999999999865 35555555554 579999999999999999
Q ss_pred HHHhC
Q psy11510 167 NEVSN 171 (171)
Q Consensus 167 ~~i~~ 171 (171)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01869 161 REIKK 165 (166)
T ss_pred HHHHh
Confidence 88753
No 45
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=4.7e-28 Score=172.46 Aligned_cols=132 Identities=20% Similarity=0.326 Sum_probs=112.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|||||||++++.+ .+...+.+.+||+||++++..++..+++++|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 5899999999999999999986 23345788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
++++++|+.+..|+..+.+.....++|+++|+||+|+.+ ....+++.... ++||++|.|++++|+.+++.
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHH
Confidence 999999999999988887665556899999999999975 23444444333 66999999999999999987
Q ss_pred Hh
Q psy11510 169 VS 170 (171)
Q Consensus 169 i~ 170 (171)
+.
T Consensus 161 ~~ 162 (164)
T smart00173 161 IR 162 (164)
T ss_pred Hh
Confidence 63
No 46
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=5.4e-28 Score=173.28 Aligned_cols=134 Identities=20% Similarity=0.329 Sum_probs=115.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
...+||+++|++|||||||++++.. .++..+.+.+||++|++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 4679999999999999999999986 2344567899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQSK 161 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~~ 161 (171)
+|||++++++|+.+..|+..+..... ..++|+++|+||+|+.. .+..+++.++. ++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 99999999999999999988866432 25789999999999965 45666666654 6699999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
|+.+++++
T Consensus 163 ~~~~~~~~ 170 (170)
T cd04116 163 FEEAVRRV 170 (170)
T ss_pred HHHHHhhC
Confidence 99998763
No 47
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=4.6e-28 Score=172.68 Aligned_cols=129 Identities=19% Similarity=0.326 Sum_probs=110.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.. ..+..+.+.+||++|++++..+++.+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999987 2223467899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++++|+.+..|+..+.+. ...+.|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999988654 235799999999999965 34555555444 6799999999999999987
Q ss_pred H
Q psy11510 168 E 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 5
No 48
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=5e-28 Score=179.78 Aligned_cols=134 Identities=23% Similarity=0.408 Sum_probs=115.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
+.+||+++|++|||||||++++.+ . ++..+.+++||++|++++..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 358999999999999999999987 1 233578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++++|+.+..|+..+.+......+|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999987654445688999999999975 35555554444 6699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.++
T Consensus 161 l~~~~~ 166 (211)
T cd04111 161 LTQEIY 166 (211)
T ss_pred HHHHHH
Confidence 998775
No 49
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=4.9e-28 Score=172.31 Aligned_cols=132 Identities=16% Similarity=0.250 Sum_probs=110.9
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.+||+++|.+|||||||++++.. .++..+.+.+||++|++++..+++.+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999887 2333466889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++.+|+++..|+..+.+.....++|+++|+||+|+.. .+..++..... ++||++|.|+.++|..+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887654456899999999999854 33433333322 6699999999999999987
Q ss_pred HH
Q psy11510 168 EV 169 (171)
Q Consensus 168 ~i 169 (171)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 53
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=3.7e-28 Score=175.42 Aligned_cols=129 Identities=13% Similarity=0.196 Sum_probs=108.1
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.+||+++|++|||||||+.++.. .++..+.+.+||++|++.+..+++.+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999887 3334578899999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hhhhc
Q psy11510 98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKATK 153 (171)
Q Consensus 98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa~ 153 (171)
|++++++|+.+. .|+..+... .++.|+++|+||+|+.+. ++.++..++. ++||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999996 577766443 358999999999999542 3444444443 77999
Q ss_pred cCCCHHHHHHHHHHH
Q psy11510 154 VKLNKQSKFQVLLNE 168 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~ 168 (171)
+|+|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999875
No 51
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=7e-28 Score=172.17 Aligned_cols=131 Identities=21% Similarity=0.345 Sum_probs=111.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ .+...+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999987 1223467899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++++|+.+..|+..+.+. ...++|+++|+||+|+.+ .+..++..+.. ++||++|.|+.++|+.+++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988543 335799999999999965 34445444433 6799999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.+.
T Consensus 161 ~~~ 163 (165)
T cd01865 161 IIC 163 (165)
T ss_pred HHH
Confidence 764
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=5.5e-28 Score=176.72 Aligned_cols=131 Identities=17% Similarity=0.266 Sum_probs=110.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
||+++|.+|||||||++++.. .++..+.+.+||++|++++..++..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 689999999999999999976 223346689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
++..+|+.+..|+..+..... .+++|+++|+||+|+.. .++.++..++. ++||++|.|++++|+++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 999999999999888765432 35799999999999964 44555444433 6799999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.+.
T Consensus 161 ~l~ 163 (190)
T cd04144 161 ALR 163 (190)
T ss_pred HHH
Confidence 764
No 53
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=9.7e-28 Score=179.01 Aligned_cols=131 Identities=24% Similarity=0.318 Sum_probs=111.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 102 (171)
+||+++|.+|||||||++++.. .....+.+.+||++|++.+..+++.+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 5899999999999999999997 112356789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---------------------CCCHHHHHHH--------------
Q psy11510 103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEG---------------------ALTPEDIKNV-------------- 147 (171)
Q Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---------------------~~~~~~~~~~-------------- 147 (171)
++|+.+..|+..+.+. ..+++|+++|+||+|+.+ .+..++...+
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999998888654 346799999999999854 3445554433
Q ss_pred --------HHhhhccCCCHHHHHHHHHHHHh
Q psy11510 148 --------SEKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 148 --------~~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
.|+||++|.||+++|..+++.++
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999998775
No 54
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=1.2e-27 Score=178.70 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=109.1
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
++||+++|+.|||||||+.++.. +++..+.+.+||++|++.|..+++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 47999999999999999999987 3445678999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhc
Q psy11510 98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATK 153 (171)
Q Consensus 98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~ 153 (171)
|++++++|+.+. .|...+ .. ..++.|+++||||+|+.+ +++.++...+. |+||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~-~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGET-QE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHH-Hh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999985 455544 32 346899999999999954 24545544433 78999
Q ss_pred cCCC-HHHHHHHHHHHHh
Q psy11510 154 VKLN-KQSKFQVLLNEVS 170 (171)
Q Consensus 154 ~~~~-v~~~f~~l~~~i~ 170 (171)
++.| |+++|..++++.+
T Consensus 159 ~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 159 SSERSVRDVFHVATVASL 176 (222)
T ss_pred cCCcCHHHHHHHHHHHHH
Confidence 9985 9999999988764
No 55
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=1.7e-27 Score=175.41 Aligned_cols=133 Identities=24% Similarity=0.367 Sum_probs=114.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.+.+||+++|++|||||||++++.+ ..+..+.+.+||+||++.+..++..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 3579999999999999999999987 1233467899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++++|+.+..|+..+... .+..|+++|+||+|+.+ .+..++..++. ++||++|.|++++|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 999999999999999999988543 35799999999999976 34555555544 6699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.++
T Consensus 162 l~~~~~ 167 (199)
T cd04110 162 ITELVL 167 (199)
T ss_pred HHHHHH
Confidence 998775
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=8.7e-28 Score=171.16 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=109.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|.+|||||||++++.. .+...+.+++||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999976 2334577899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
|++++.+++.+..|+..+.+. .++.|+++|+||+|+..... ++...+ .++||++|.|++++|+.+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSVT-QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhHH-HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999888543 35799999999999864322 222222 2669999999999999999887
Q ss_pred h
Q psy11510 170 S 170 (171)
Q Consensus 170 ~ 170 (171)
+
T Consensus 158 ~ 158 (161)
T cd04124 158 V 158 (161)
T ss_pred H
Confidence 5
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.3e-27 Score=170.65 Aligned_cols=131 Identities=26% Similarity=0.406 Sum_probs=110.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
+.+||+++|++|+|||||++++.. .++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999975 22233688999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~~ 164 (171)
|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+ .+..+++.... ++||++|.|++++|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999988653 246899999999999975 33444444443 6699999999999999
Q ss_pred HHHH
Q psy11510 165 LLNE 168 (171)
Q Consensus 165 l~~~ 168 (171)
+++.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9875
No 58
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.1e-27 Score=172.85 Aligned_cols=133 Identities=35% Similarity=0.529 Sum_probs=115.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
.++.+||+++|++|+|||||++++.. .....+.+.+||+||++.+...|..+++++|++++|+|
T Consensus 12 ~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 12 PRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 34578999999999999999999975 33346789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
+++++++.....++..+++.....++|+++++||+|+.+..+.+++.+.+ ++||++|.|++++|+++
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99999999988888888776555689999999999998766666654443 57999999999999999
Q ss_pred HH
Q psy11510 166 LN 167 (171)
Q Consensus 166 ~~ 167 (171)
++
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 75
No 59
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=8.2e-28 Score=175.69 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=109.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
.||+++|++|||||||++++.. .++..+.+++||++|++.+..+++.+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 4899999999999999999987 23345788999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCC--------------CHHHHHHH---------HHhhhcc
Q psy11510 99 SADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGAL--------------TPEDIKNV---------SEKATKV 154 (171)
Q Consensus 99 ~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~---------~~~sa~~ 154 (171)
++++++|+.+. .|+..+... .++.|+++|+||+|+.+.. ..++...+ .++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999986 588777643 3589999999999997532 22333322 2779999
Q ss_pred CCCHHHHHHHHHHHHhC
Q psy11510 155 KLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 155 ~~~v~~~f~~l~~~i~~ 171 (171)
|.|++++|+++++.+++
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988763
No 60
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=1.7e-27 Score=177.33 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=111.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+||+++|++|||||||++++.. ++ ...+.+++||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999986 11 2357889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
||++++++|+.+..|+..+.+... ..++|+++|+||+|+.+ .+..++...+. ++||++|+|++++|+.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999888865432 24578999999999964 45555554444 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 161 l~~~l~ 166 (215)
T cd04109 161 LAAELL 166 (215)
T ss_pred HHHHHH
Confidence 998764
No 61
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=2.4e-27 Score=172.45 Aligned_cols=134 Identities=30% Similarity=0.545 Sum_probs=114.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc------------------c---ccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM------------------I---MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~------------------~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
+.+||+++|.+|||||||++++.. . +...+.+.+||++|++++..+|+.+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999976 1 2245789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNKQSK 161 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v~~~ 161 (171)
|+|++++.+++.+..|+..+.......++|+++|+||+|+.+..+.+++.... ++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 99999999999998888888765445689999999999998766655554432 5799999999999
Q ss_pred HHHHHHHHh
Q psy11510 162 FQVLLNEVS 170 (171)
Q Consensus 162 f~~l~~~i~ 170 (171)
|+.+++.+.
T Consensus 162 ~~~l~~~l~ 170 (183)
T cd04152 162 LEKLYEMIL 170 (183)
T ss_pred HHHHHHHHH
Confidence 999998764
No 62
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=1.6e-27 Score=171.44 Aligned_cols=131 Identities=20% Similarity=0.310 Sum_probs=109.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 40 VVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
||+++|..|||||||++++.. ..+..+.+++||++|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999998 22334678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHH--------HHhhhccCCCHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL----TPEDIKNV--------SEKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~--------~~~sa~~~~~v~~~f~~l~ 166 (171)
++++++++.+..|+..+++.....+.|+++|+||.|+.+.. ..++...+ .++||++|.|++++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998766544568899999999996521 23322222 2679999999999999998
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 162 ~~~~ 165 (170)
T cd04108 162 ALTF 165 (170)
T ss_pred HHHH
Confidence 8764
No 63
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=1.8e-27 Score=169.14 Aligned_cols=130 Identities=22% Similarity=0.389 Sum_probs=117.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 40 VVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
||+++|+.|||||||++++.+ .+...+.+.+||++|++++..++..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999998 44567889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
+++++||+.+..|+..+..... .++|+++++||+|+.+ .++.+++.++. ++||+++.|+.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999865543 5799999999999986 78888877776 67999999999999999998
Q ss_pred Hh
Q psy11510 169 VS 170 (171)
Q Consensus 169 i~ 170 (171)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 64
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=1.2e-27 Score=173.99 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=107.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|+.|||||||++++.. .++..+.+.+||++|+++|..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999976 2334578899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-------HHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-------PEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
|++++.+|+++..|+..+.+.. ....| ++|+||+|+....+ .++..++. ++||++|.|++++|
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999886542 24567 67899999953211 22233322 67999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+++++.++
T Consensus 159 ~~l~~~l~ 166 (182)
T cd04128 159 KIVLAKAF 166 (182)
T ss_pred HHHHHHHH
Confidence 99998765
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=1.7e-27 Score=169.17 Aligned_cols=130 Identities=20% Similarity=0.312 Sum_probs=111.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ ++...+.+++||++|++.+...++.+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999986 2333567899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++.+|+.+..|+..+... ..+++|+++|+||+|+.. .++.+++..+. ++||+++.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999998887433 347899999999999965 35555655554 6699999999999999987
Q ss_pred HH
Q psy11510 168 EV 169 (171)
Q Consensus 168 ~i 169 (171)
.+
T Consensus 160 ~~ 161 (161)
T cd04113 160 SI 161 (161)
T ss_pred hC
Confidence 64
No 66
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=2.7e-27 Score=168.77 Aligned_cols=133 Identities=25% Similarity=0.385 Sum_probs=112.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+||+++|++|||||||++++.. .+...+.+.+||++|++++..+++.++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999986 22334678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|||++++.+++.+..|+..+.+.. ..++|+++|+||+|+.+ ....++...+. ++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999886543 34699999999999975 34555555544 56999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.++
T Consensus 161 ~~~i~ 165 (165)
T cd01868 161 LTEIY 165 (165)
T ss_pred HHHhC
Confidence 98764
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=3.3e-27 Score=169.23 Aligned_cols=133 Identities=23% Similarity=0.349 Sum_probs=115.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+||+++|.+|||||||++++.+ .+...+.+.+||++|++++..++..+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999997 23345788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|+|++++.+++.+..|+..+.... .+++|+++|+||.|+.+ .++.++...+. +.||++|+|++++|..+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999886542 46899999999999974 45666665554 66999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.++
T Consensus 162 ~~~~~ 166 (168)
T cd01866 162 AKEIY 166 (168)
T ss_pred HHHHH
Confidence 98875
No 68
>KOG0091|consensus
Probab=99.95 E-value=1.7e-27 Score=165.15 Aligned_cols=136 Identities=21% Similarity=0.387 Sum_probs=119.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
...++.++||++-+|||+|++.|.. -++..+++++|||+||++|+++..+|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 3678999999999999999999997 456789999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCC-CeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAG-ATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
++|||.++..+|+.++.|+++..-....|+ +-..+||+|+|+.. .++.+|.+++. |+||++|.||++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999988643333344 44678899999976 68888888876 88999999999999
Q ss_pred HHHHHHHhC
Q psy11510 163 QVLLNEVSN 171 (171)
Q Consensus 163 ~~l~~~i~~ 171 (171)
..++++|++
T Consensus 166 ~mlaqeIf~ 174 (213)
T KOG0091|consen 166 DMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHH
Confidence 999999863
No 69
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.8e-27 Score=170.68 Aligned_cols=128 Identities=30% Similarity=0.488 Sum_probs=111.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 103 (171)
+|+++|++|||||||++++.+ +...+..+++||++|++.++.+|..+++++|++++|||+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 489999999999999999987 3345678999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------------HhhhccC------CCHHHH
Q psy11510 104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------------EKATKVK------LNKQSK 161 (171)
Q Consensus 104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------------~~sa~~~------~~v~~~ 161 (171)
+++++..|+..++......++|+++|+||+|+++..+.+++.+.. ++||++| .|+.+.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999999876555689999999999998876655554442 4689998 899999
Q ss_pred HHHHHH
Q psy11510 162 FQVLLN 167 (171)
Q Consensus 162 f~~l~~ 167 (171)
|+||+.
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 70
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=2.1e-27 Score=169.92 Aligned_cols=126 Identities=33% Similarity=0.526 Sum_probs=107.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 102 (171)
.|+++|++|||||||++++.+ ++..++.+.+||++|++.++.+|+.+++++|++++|||++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 379999999999999999997 344568899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------------HhhhccCCCHHHHH
Q psy11510 103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------------EKATKVKLNKQSKF 162 (171)
Q Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------~~sa~~~~~v~~~f 162 (171)
.++...+.|+..++... +++|+++|+||+|+.+....+++.... ++||++++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99999999999886543 689999999999998765555443332 44666699999999
Q ss_pred HHHHH
Q psy11510 163 QVLLN 167 (171)
Q Consensus 163 ~~l~~ 167 (171)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98864
No 71
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=3e-27 Score=169.76 Aligned_cols=132 Identities=18% Similarity=0.306 Sum_probs=112.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh-HHHHHhhhCCCEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR-SYWRNYFESTDGLIW 95 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~ii~ 95 (171)
.+||+++|++|||||||++++.. .++..+.+++||++|+++++ .+++.+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999976 23345789999999999887 578899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhcc---CCCHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKV---KLNKQSKF 162 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~---~~~v~~~f 162 (171)
|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ .++.++..++. ++||++ +.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887655456899999999999975 34555554443 669999 99999999
Q ss_pred HHHHHHH
Q psy11510 163 QVLLNEV 169 (171)
Q Consensus 163 ~~l~~~i 169 (171)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9999875
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=1.6e-27 Score=169.63 Aligned_cols=126 Identities=15% Similarity=0.263 Sum_probs=104.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
+||+++|+.|||||||+.++.. +++..+.+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 5899999999999999999865 223347799999999975 3467889999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH---------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS---------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~ 166 (171)
+++.||+++..|+..+......+++|+++|+||.|+.. .++.++.+++. ++||++|.||+++|+.++
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAA 155 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999997765557899999999999842 45555543332 679999999999999998
Q ss_pred HHH
Q psy11510 167 NEV 169 (171)
Q Consensus 167 ~~i 169 (171)
+.+
T Consensus 156 ~~~ 158 (158)
T cd04103 156 QKI 158 (158)
T ss_pred hhC
Confidence 753
No 73
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.2e-27 Score=171.92 Aligned_cols=134 Identities=27% Similarity=0.472 Sum_probs=118.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
.++.++|+++|++|||||||++++.+ ....++++.+||++|++.++..|..++.++|++++|+|
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 46789999999999999999999987 22345778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------------HhhhccCCCH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------------EKATKVKLNK 158 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------~~sa~~~~~v 158 (171)
++++.++.....++..+++.....++|+++|+||+|++..++.+++++.+ ++||++|+|+
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99999999999899888776555789999999999998888888877654 4589999999
Q ss_pred HHHHHHHHHH
Q psy11510 159 QSKFQVLLNE 168 (171)
Q Consensus 159 ~~~f~~l~~~ 168 (171)
+++++++.+.
T Consensus 174 ~~~~~wl~~~ 183 (184)
T smart00178 174 GEGFKWLSQY 183 (184)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 74
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=3.5e-27 Score=168.52 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=107.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|||||||++++.+ .+...+.+.+||++|++++..++..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999987 12234678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEE--RLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
++++++|+.+..|+..+.+.. ..+++|+++|+||+|+.. .+..++...+. ++||++|.|++++|++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~ 161 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELL 161 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Confidence 999999999998887664322 236799999999999965 34444433332 679999999999999997
Q ss_pred H
Q psy11510 167 N 167 (171)
Q Consensus 167 ~ 167 (171)
+
T Consensus 162 ~ 162 (165)
T cd04140 162 N 162 (165)
T ss_pred h
Confidence 5
No 75
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=2.9e-27 Score=176.27 Aligned_cols=135 Identities=22% Similarity=0.360 Sum_probs=115.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
....+||+++|++|||||||++++.+ .++..+.+++||++|++++..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 44679999999999999999999987 234457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+ .++.++...+. ++||++|.|++++|+
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888543 336899999999999865 34555555443 679999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 168 ~l~~~i~ 174 (216)
T PLN03110 168 TILLEIY 174 (216)
T ss_pred HHHHHHH
Confidence 9998764
No 76
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=3.2e-27 Score=167.60 Aligned_cols=129 Identities=27% Similarity=0.418 Sum_probs=108.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 101 (171)
+|+++|++|||||||++++.+ ....++.+.+||+||++++..+|..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999997 12245678999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 102 KRRLEDCARELHELLQEER--LAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 102 ~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
+.++.....|+..+++... ..++|+++|+||+|+.+....+++...+ ++||++|.|++++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999988888888876432 2579999999999998755544443322 579999999999999987
Q ss_pred HH
Q psy11510 167 NE 168 (171)
Q Consensus 167 ~~ 168 (171)
++
T Consensus 161 ~~ 162 (162)
T cd04157 161 AQ 162 (162)
T ss_pred cC
Confidence 53
No 77
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=4.5e-27 Score=171.10 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=109.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ .. +..+.+.+||++|++++..+++.+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 5899999999999999999997 22 44678999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC------CCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510 98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA------LTPEDIKNVS---------EKATKVKLNKQSK 161 (171)
Q Consensus 98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~---------~~sa~~~~~v~~~ 161 (171)
|++++.+|+.+. .|+..+... .++.|+++|+||+|+... +..++..++. ++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 999999999986 477766432 358999999999998652 3455554443 6699999999999
Q ss_pred HHHHHHHHh
Q psy11510 162 FQVLLNEVS 170 (171)
Q Consensus 162 f~~l~~~i~ 170 (171)
|+.+++.++
T Consensus 159 f~~l~~~~~ 167 (187)
T cd04132 159 FDTAIEEAL 167 (187)
T ss_pred HHHHHHHHH
Confidence 999998775
No 78
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=4.9e-27 Score=171.81 Aligned_cols=131 Identities=26% Similarity=0.429 Sum_probs=110.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+||+++|++|||||||++++.. +++..+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 5899999999999999999876 223346789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
||++++++|+++..|+..+.+. ...++|+++|+||+|+.. .+..++..... ++||++|.|++++|+.++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999888654 335799999999999963 34444444443 679999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 160 ~~~~ 163 (191)
T cd04112 160 KELK 163 (191)
T ss_pred HHHH
Confidence 8764
No 79
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=5.6e-27 Score=166.26 Aligned_cols=128 Identities=37% Similarity=0.659 Sum_probs=110.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 102 (171)
+|+++|++|||||||++++.. + ......+.+||++|++.+...|..+++++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 589999999999999999987 1 12356899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCHHHHHHHHHH
Q psy11510 103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v~~~f~~l~~ 167 (171)
.++.....|+..+++.....+.|+++|+||+|+.+..+.+++...+ ++||++|+|++++|+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999999999998876555789999999999997765555554332 4799999999999999865
No 80
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=5.8e-27 Score=170.86 Aligned_cols=131 Identities=24% Similarity=0.374 Sum_probs=111.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|+.|||||||++++.+ +++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999998 2234567899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+ .++.++...+. ++||++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999998885432 34689999999999974 34554444433 6799999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.+.
T Consensus 160 ~~~ 162 (188)
T cd04125 160 LII 162 (188)
T ss_pred HHH
Confidence 875
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=3.2e-27 Score=169.75 Aligned_cols=129 Identities=15% Similarity=0.218 Sum_probs=108.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC
Q psy11510 41 VSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 100 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 100 (171)
|+++|++|||||||++++.. .++..+.+.+||++|++.+..+++.+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999987 3344567999999999999999999999999999999999
Q ss_pred ChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------HhhhccCC
Q psy11510 101 DKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKATKVKL 156 (171)
Q Consensus 101 ~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa~~~~ 156 (171)
++++|+.+. .|+..+... .+++|+++|+||+|+... ++.++...+. ++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999986 577777543 368999999999999652 3444433333 66999999
Q ss_pred CHHHHHHHHHHHHhC
Q psy11510 157 NKQSKFQVLLNEVSN 171 (171)
Q Consensus 157 ~v~~~f~~l~~~i~~ 171 (171)
|++++|+.+++.+++
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998764
No 82
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=6.2e-27 Score=166.09 Aligned_cols=128 Identities=41% Similarity=0.700 Sum_probs=108.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 103 (171)
||+++|+++||||||++++.. .+..++.+++||+||++.++.+|+.+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 689999999999999999965 3345678999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-------------HHhhhccCCCHHHHHHHHHH
Q psy11510 104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-------------SEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-------------~~~sa~~~~~v~~~f~~l~~ 167 (171)
++....+++..+++.....++|+++|+||+|+.++...+++... .++||++|.|++++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88887787877766555568999999999999875544444332 26799999999999999976
No 83
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=7.5e-27 Score=170.31 Aligned_cols=140 Identities=27% Similarity=0.489 Sum_probs=119.6
Q ss_pred ccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 30 RHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 30 ~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+....+..||+++|++|||||||++++.+ +...+..+.+||+||++.++..|..+++++|++
T Consensus 11 ~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 11 SSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred HHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 3334456789999999999999999999986 233467889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------------------------H
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------------------------E 149 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------------------------~ 149 (171)
++|+|+++..+++....|+..+++.....+.|+++++||+|+..+++.++++..+ +
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999999999988999998876555789999999999998777777766543 5
Q ss_pred hhhccCCCHHHHHHHHHHHH
Q psy11510 150 KATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 150 ~sa~~~~~v~~~f~~l~~~i 169 (171)
+||++|.|++++|+++++.+
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEecCCCChHHHHHHHHhhC
Confidence 59999999999999998753
No 84
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=1.4e-26 Score=164.63 Aligned_cols=131 Identities=21% Similarity=0.325 Sum_probs=113.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
++||+++|++|||||||++++.+ .+...+.+.+||++|++++...++.+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998 333457899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
+|++++++++....|+..+.... .++.|+++++||+|+.. ..+.++..... ++||++|.|+.++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999986654 37899999999999874 34555555544 669999999999999998
Q ss_pred HHH
Q psy11510 167 NEV 169 (171)
Q Consensus 167 ~~i 169 (171)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 875
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=1.3e-26 Score=166.13 Aligned_cols=133 Identities=17% Similarity=0.256 Sum_probs=112.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.+||+++|++|||||||++++.+ .+...+.+++||++|+++|..+++.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37899999999999999999986 2233467899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHH---------HHhhhccCCCHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNV---------SEKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~---------~~~sa~~~~~v~~~f~~l~ 166 (171)
|++++++++.+..|...+.+.....+.|+++++||.|+.+ ....++.... .++||++|.|+.++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887654456899999999999965 3344443322 2779999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
.+++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7653
No 86
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=5.1e-27 Score=172.93 Aligned_cols=124 Identities=16% Similarity=0.301 Sum_probs=106.8
Q ss_pred EeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510 44 LRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102 (171)
Q Consensus 44 iG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 102 (171)
+|..|||||||++++.. .+...+.+++||++|+++|..+++.+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999986 234568899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
.+|+.+..|+..+.+.. +++|+++|+||+|+.. .+..++. .+. ++||++|.||+++|+++++.++
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999996542 5899999999999865 3444433 222 7799999999999999998774
No 87
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.1e-26 Score=165.87 Aligned_cols=128 Identities=36% Similarity=0.607 Sum_probs=110.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+|+++|++|||||||++++.. ...++..+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999864 223457899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------------HhhhccCCCHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------------EKATKVKLNKQSK 161 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------------~~sa~~~~~v~~~ 161 (171)
+|++++.++.....|+..+++.....++|+++++||+|+.+....+++.+.+ +.||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 9999999999999999998876556789999999999998766666555443 5699999999999
Q ss_pred HHHHHH
Q psy11510 162 FQVLLN 167 (171)
Q Consensus 162 f~~l~~ 167 (171)
|++|++
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999875
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=1.9e-26 Score=165.16 Aligned_cols=132 Identities=20% Similarity=0.322 Sum_probs=111.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ ..+..+.+++||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999986 2234567889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~ 163 (171)
|++++.+++....|...++.... ..++|+++|+||+|+.. ..+.++...+. ++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888887765433 23799999999999973 44566655554 459999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.++
T Consensus 161 ~i~~~~~ 167 (172)
T cd01862 161 TIARKAL 167 (172)
T ss_pred HHHHHHH
Confidence 9998775
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=1.4e-26 Score=164.48 Aligned_cols=128 Identities=18% Similarity=0.329 Sum_probs=109.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cc--cCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IM--TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
+||+++|++|+|||||++++.. .. ...+.+++||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999996 11 345789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|||++++++|+.+..|+..+... ..++|+++|+||+|+.. .++.+++.++. ++|+++|.|++++|+.+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999998887543 36899999999999865 45555554444 66999999999999999
Q ss_pred HHH
Q psy11510 166 LNE 168 (171)
Q Consensus 166 ~~~ 168 (171)
++.
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 764
No 90
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=1.7e-26 Score=171.40 Aligned_cols=134 Identities=24% Similarity=0.350 Sum_probs=114.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.+.+||+++|+.|||||||++++.. +....+.+.+||++|++.+..++..+++++|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4579999999999999999999986 1223467899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+ .++.++..++. ++||+++.|++++|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999988875432 36899999999999976 45666655554 6699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.++
T Consensus 163 l~~~~~ 168 (210)
T PLN03108 163 TAAKIY 168 (210)
T ss_pred HHHHHH
Confidence 998875
No 91
>KOG0088|consensus
Probab=99.95 E-value=3.1e-27 Score=163.16 Aligned_cols=135 Identities=22% Similarity=0.308 Sum_probs=117.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
+...+|++++|..-+|||||+-++.. +......++||||+||++|..+-+-||++.++.
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45679999999999999999999987 444567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||+++.++|+.+++|..++..- .-..+.+++|+||+|+.+ .+..++...+. ++||+.|.||.++|+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 9999999999999999999998543 235789999999999986 56666666554 779999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+.+.++
T Consensus 169 ~Lt~~Mi 175 (218)
T KOG0088|consen 169 SLTAKMI 175 (218)
T ss_pred HHHHHHH
Confidence 9987654
No 92
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=1.6e-26 Score=175.40 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=112.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|||||||++++.. +++..+.+++||++|++.|..++..++.++|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 5899999999999999999975 23345788999999999999999989999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcc--------ccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHH
Q psy11510 99 SADKRRLEDCARELHELLQEE--------RLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQ 159 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~ 159 (171)
+++.++|+++..|+..+.+.. ...++|+++|+||+|+.. .+..+++.+.. ++||++|.|++
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~ 160 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLD 160 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence 999999999999999886531 235799999999999974 56666666553 57999999999
Q ss_pred HHHHHHHHHH
Q psy11510 160 SKFQVLLNEV 169 (171)
Q Consensus 160 ~~f~~l~~~i 169 (171)
++|+.+++..
T Consensus 161 elf~~L~~~~ 170 (247)
T cd04143 161 EMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=2.3e-26 Score=163.33 Aligned_cols=131 Identities=24% Similarity=0.410 Sum_probs=112.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ .++..+.+++||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999987 2233468899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++.+++.+..|+..+.... .+++|+++|+||+|+.. ..+.+.+..+. ++|+++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988886543 25899999999999875 34555555554 6699999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00175 160 EIL 162 (164)
T ss_pred HHh
Confidence 765
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=2.5e-26 Score=163.05 Aligned_cols=130 Identities=23% Similarity=0.350 Sum_probs=112.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ .....+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999997 2233578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
|++++++|+.+..|+..+......++.|+++|+||+|+.. ....++..++. ++|+++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999988887665567899999999999974 44555555554 66999999999999998865
No 95
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=2.7e-26 Score=162.77 Aligned_cols=129 Identities=18% Similarity=0.354 Sum_probs=109.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ .++..+.+++||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999987 1223467899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++++|+.+..|+..+.... ..+.|+++++||+|+.+ ....++..... ++||+++.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999999886543 24799999999999954 33444444443 5699999999999999987
Q ss_pred H
Q psy11510 168 E 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 5
No 96
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=4.1e-26 Score=162.39 Aligned_cols=129 Identities=19% Similarity=0.292 Sum_probs=108.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-----------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-----------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-----------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
+||+++|++|||||||++++.. . ....+.+.+||++|++.+..+++.+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 5899999999999999999963 1 235688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++.+++.+..|+..+.+.. .++|+++|+||+|+.+. +...+...+. ++||++|.|++++|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 9999999999999999998886542 57999999999999652 3443322222 6799999999999999
Q ss_pred HHHHH
Q psy11510 165 LLNEV 169 (171)
Q Consensus 165 l~~~i 169 (171)
+++.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 99875
No 97
>KOG0071|consensus
Probab=99.94 E-value=1.4e-26 Score=156.83 Aligned_cols=134 Identities=34% Similarity=0.614 Sum_probs=126.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
..++++|+.+|..++||||+++++.. +.+.++.+++||++|++..++.|..||....++|||+|
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D 93 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 93 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence 56799999999999999999999997 67889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
+.+.+.+++.++.+..++++..+.+.|++|.+||+|++++..+.|+.+++ .+++.+|.+..+-|.++
T Consensus 94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswl 173 (180)
T KOG0071|consen 94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWL 173 (180)
T ss_pred ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 44899999999999998
Q ss_pred HHH
Q psy11510 166 LNE 168 (171)
Q Consensus 166 ~~~ 168 (171)
++.
T Consensus 174 snn 176 (180)
T KOG0071|consen 174 SNN 176 (180)
T ss_pred Hhh
Confidence 764
No 98
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=1.9e-26 Score=165.69 Aligned_cols=130 Identities=13% Similarity=0.181 Sum_probs=107.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|+|||||++++.. .+...+.+.+||++|++.+...++.+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999986 22334668899999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhcc
Q psy11510 99 SADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATKV 154 (171)
Q Consensus 99 ~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~~ 154 (171)
++++.+|+.+. .|+..+... .++.|+++|+||+|+.+ .++.++..... ++||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 99999999986 465555332 57899999999999854 23344433332 679999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy11510 155 KLNKQSKFQVLLNEVS 170 (171)
Q Consensus 155 ~~~v~~~f~~l~~~i~ 170 (171)
|.|++++|+.+++.++
T Consensus 159 ~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 159 QKGLKTVFDEAILAIL 174 (174)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999998874
No 99
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=4.4e-26 Score=161.36 Aligned_cols=130 Identities=25% Similarity=0.347 Sum_probs=110.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|+|||||++++.. ..+....+.+||++|++.+..+++.+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999997 2234567899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++++++.+..|+..+.... ..++|+++|+||+|+.. .+..+++.+.. ++|+++|.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMR-GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988885543 24799999999999975 34455554443 6699999999999999988
Q ss_pred HH
Q psy11510 168 EV 169 (171)
Q Consensus 168 ~i 169 (171)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 75
No 100
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=2.5e-26 Score=163.92 Aligned_cols=131 Identities=17% Similarity=0.232 Sum_probs=106.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-hhHHHHHhhhCCCEEEEEEe
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-LRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ii~v~d 98 (171)
||+++|++|||||||++++.. .++..+.+++||+||+++ +...+..+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999864 344456789999999985 34567788999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC-CCHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEER-LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK-LNKQSKFQVLL 166 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~-~~v~~~f~~l~ 166 (171)
++++++|+.+..|+..+..... ..+.|+++|+||+|+.. .++.++...+. ++||++| .|++++|+.++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence 9999999999998887755332 45899999999999864 45555554444 6699999 59999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 161 ~~~~ 164 (165)
T cd04146 161 REVR 164 (165)
T ss_pred HHHh
Confidence 8763
No 101
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=3.7e-26 Score=168.24 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=105.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhH--------HHHHhhhC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFES 89 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 89 (171)
+||+++|.+|||||||++++.+ .++..+.+++||++|.+.+.. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999987 122336788999999765421 12344789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCC--CCCHHHHHHH---------HHhhhccCC
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEE--RLAGATLLVFANKQDIEG--ALTPEDIKNV---------SEKATKVKL 156 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~---------~~~sa~~~~ 156 (171)
+|++++|||++++++|+.+..|+..+.+.. ...++|+++|+||+|+.+ .++.+++..+ .++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887653 246899999999999965 2444444333 266999999
Q ss_pred CHHHHHHHHHHHHh
Q psy11510 157 NKQSKFQVLLNEVS 170 (171)
Q Consensus 157 ~v~~~f~~l~~~i~ 170 (171)
|++++|+.+++.++
T Consensus 161 ~v~~lf~~i~~~~~ 174 (198)
T cd04142 161 HILLLFKELLISAT 174 (198)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998775
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=4.9e-26 Score=166.47 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=109.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+||+++|.+|||||||++++.. .++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 5899999999999999999986 223345678999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC------CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG------ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~------~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
||++++.+|+.+..|+..+... .++.|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888553 35799999999999854 22334444442 67999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.++
T Consensus 159 ~~i~~~~~ 166 (193)
T cd04118 159 QKVAEDFV 166 (193)
T ss_pred HHHHHHHH
Confidence 99998775
No 103
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=3.8e-26 Score=167.77 Aligned_cols=127 Identities=15% Similarity=0.217 Sum_probs=103.2
Q ss_pred eeEEEEEeCCCCcHHHHHH-HHhc---------------c--------------------ccCceEEEEEecCCccchhH
Q psy11510 38 VAVVSLLRNKNGGETLILK-KKKM---------------I--------------------MTFRFKLNIWDVGGQKSLRS 81 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~-~~~~---------------~--------------------~~~~~~~~i~d~~g~~~~~~ 81 (171)
.+||+++|+.|||||||+. ++.+ + ++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 4431 1 12257889999999975 3
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC---------------------CC
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG---------------------AL 139 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---------------------~~ 139 (171)
+.+.+++++|++++|||++++.||+.+. .|+..+... .++.|+++|+||+|+.+ .+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 4567899999999999999999999997 587777443 25799999999999853 45
Q ss_pred CHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 140 TPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 140 ~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
+.++...+. |+||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 666666665 77999999999999999875
No 104
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=8.9e-26 Score=167.59 Aligned_cols=136 Identities=20% Similarity=0.300 Sum_probs=111.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
....+||+++|.+|||||||++++.. .+...+.+.+||+||++++..++..+++++|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 44579999999999999999999985 2234578899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQE-ERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
+|||++++++|+.+..++...+.. ....+.|+++|+||+|+.. .+..++...+. ++||++|.|++++|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999998644443332 2235689999999999975 34444444433 679999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 171 ~l~~~~~ 177 (211)
T PLN03118 171 ELALKIM 177 (211)
T ss_pred HHHHHHH
Confidence 9998764
No 105
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=3.1e-26 Score=164.55 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=109.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
++.+||+++|++|||||||++++.. .++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 5789999999999999999999987 223336788999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--C---CHHHHHHH------HHhhhccCCCHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--L---TPEDIKNV------SEKATKVKLNKQSKF 162 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~---~~~~~~~~------~~~sa~~~~~v~~~f 162 (171)
++|+|++++.+|+.+..|+..+.. ..++|+++|+||+|+.+. . ..+++.+. .++||++|.|++++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 999999999999999888876632 247999999999999642 1 12333222 367999999999999
Q ss_pred HHHHHHHhC
Q psy11510 163 QVLLNEVSN 171 (171)
Q Consensus 163 ~~l~~~i~~ 171 (171)
+.+++.+++
T Consensus 159 ~~l~~~~~~ 167 (169)
T cd01892 159 TKLATAAQY 167 (169)
T ss_pred HHHHHHhhC
Confidence 999988753
No 106
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=6.3e-26 Score=160.62 Aligned_cols=128 Identities=38% Similarity=0.675 Sum_probs=111.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR 103 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 103 (171)
||+++|.+|||||||++++.+ .....+.+.+||+||++.+...+..+++.+|++++|+|++++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 689999999999999999988 2334678999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHH
Q psy11510 104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~ 167 (171)
++.....++..+.......+.|+++|+||+|+......+++.+.+ +.||++|.|++++|+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 999999999988776556789999999999998755555555443 4699999999999999875
No 107
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=5.3e-26 Score=163.28 Aligned_cols=139 Identities=45% Similarity=0.711 Sum_probs=117.1
Q ss_pred cccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 29 LRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 29 ~~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
+++.....+.++|+++|++|||||||++++.+ +...+..+.+||++|+..+...+..+++++|+
T Consensus 5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 5 LRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred HHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 44455556689999999999999999999998 22345678999999999998899999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQ 159 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~ 159 (171)
+++|+|+++..++.....++..++......++|+++++||+|+.+....+++.+.+ ++||++|+|++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 99999999999999888888888776555689999999999997755555554433 56999999999
Q ss_pred HHHHHHHH
Q psy11510 160 SKFQVLLN 167 (171)
Q Consensus 160 ~~f~~l~~ 167 (171)
++|+++++
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999976
No 108
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=1.2e-25 Score=159.63 Aligned_cols=132 Identities=23% Similarity=0.323 Sum_probs=112.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|||||||++++.. .+...+.+.+||++|++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 5899999999999999999976 23356789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
++++.+|..+..|+..+.......++|+++|+||+|+.+ ....++..... ++||++|.|++++|+.+++.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 999999999999999987764456899999999999976 33444333322 66999999999999999877
Q ss_pred Hh
Q psy11510 169 VS 170 (171)
Q Consensus 169 i~ 170 (171)
+.
T Consensus 161 ~~ 162 (164)
T cd04139 161 IR 162 (164)
T ss_pred HH
Confidence 53
No 109
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=2.1e-25 Score=159.47 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=109.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
+..+||+++|++|||||||++++.. ..+..+.+.+||++|++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999984 1233477899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .+..+....+. ++||++|.|++++|+.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 999999999999999988777432 335799999999999975 23333222222 6699999999999999
Q ss_pred HHHHH
Q psy11510 165 LLNEV 169 (171)
Q Consensus 165 l~~~i 169 (171)
+++.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 99865
No 110
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=5.9e-26 Score=163.44 Aligned_cols=127 Identities=13% Similarity=0.214 Sum_probs=105.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|+|||||+.++.. +++..+.+.+||++|++.+..+++.+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999975 23345778999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhcc
Q psy11510 99 SADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATKV 154 (171)
Q Consensus 99 ~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~~ 154 (171)
++++.+|+.+. .|+..+... .++.|+++|+||+|+.. .+..+++..+. ++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999985 577777532 35799999999999853 23444444333 679999
Q ss_pred CCCHHHHHHHHHH
Q psy11510 155 KLNKQSKFQVLLN 167 (171)
Q Consensus 155 ~~~v~~~f~~l~~ 167 (171)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998864
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=2.1e-25 Score=159.59 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=105.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
+||+++|.+|||||||++++.. .....+.+.+||++|++.+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 4899999999999999999987 222457889999999998888888889999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHH----------HHHhhhccCCCHHHHHHH
Q psy11510 100 ADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKN----------VSEKATKVKLNKQSKFQV 164 (171)
Q Consensus 100 ~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~----------~~~~sa~~~~~v~~~f~~ 164 (171)
+++.+|+.+. .|+..+... .++.|+++|+||+|+.+... .+++.. +.++||++|.|++++|+.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~--~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRL--GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 9999999986 455555332 24899999999999976332 122211 226799999999999999
Q ss_pred HHHHHhC
Q psy11510 165 LLNEVSN 171 (171)
Q Consensus 165 l~~~i~~ 171 (171)
+.+.+++
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9887753
No 112
>KOG0081|consensus
Probab=99.94 E-value=2.7e-27 Score=163.51 Aligned_cols=136 Identities=19% Similarity=0.307 Sum_probs=120.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------cccCceEEEEEecCCccchhHHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------IMTFRFKLNIWDVGGQKSLRSYWR 84 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------~~~~~~~~~i~d~~g~~~~~~~~~ 84 (171)
....+|.+.+|++|+||||+++++.. -....+.+++|||+||++|+++..
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT 85 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT 85 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence 34568999999999999999999987 123458899999999999999999
Q ss_pred HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhcc
Q psy11510 85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKV 154 (171)
Q Consensus 85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~ 154 (171)
.|++++.+++++||+++..||-++.+|+.++..+....++.+++++||+|+++ .++.++..... |+||-+
T Consensus 86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 99999999999999999999999999999998777778889999999999988 56666665554 889999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy11510 155 KLNKQSKFQVLLNEVS 170 (171)
Q Consensus 155 ~~~v~~~f~~l~~~i~ 170 (171)
|.||++..+.+.+.++
T Consensus 166 g~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVM 181 (219)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988876
No 113
>KOG0097|consensus
Probab=99.94 E-value=1.2e-25 Score=152.78 Aligned_cols=136 Identities=21% Similarity=0.341 Sum_probs=122.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
.+..+|.+++|+.|+|||+|+.+|.. +.+..+++++||+.||++|+....+|++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 45678999999999999999999987 567789999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++...+++.+..|+.+... ...++..+++++||+|+.. .++-++...+. +.||++|.||++.|-
T Consensus 88 lmvyditrrstynhlsswl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 999999999999999999988743 4457888999999999976 57778887776 669999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
..++.|++
T Consensus 167 e~akkiyq 174 (215)
T KOG0097|consen 167 ETAKKIYQ 174 (215)
T ss_pred HHHHHHHH
Confidence 99998875
No 114
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=4e-25 Score=162.61 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=109.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
||+++|..|||||||++++.. ..+..+.+++||++|+..+..+++.++.++|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999987 122336889999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---CCCHHHHHHH---------HHhhhccCCCHHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG---ALTPEDIKNV---------SEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~---------~~~sa~~~~~v~~~f~~l~~ 167 (171)
+++.+++.+..|+..+.+.....++|+++|+||+|+.. .+..++..+. .+.||++|.|++++|+++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888765556899999999999964 2333322221 25799999999999999998
Q ss_pred HH
Q psy11510 168 EV 169 (171)
Q Consensus 168 ~i 169 (171)
.+
T Consensus 161 ~~ 162 (198)
T cd04147 161 QA 162 (198)
T ss_pred Hh
Confidence 65
No 115
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=4.1e-25 Score=165.27 Aligned_cols=130 Identities=13% Similarity=0.177 Sum_probs=105.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhh-CCCEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE-STDGLIW 95 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~ii~ 95 (171)
+||+++|++|||||||++++.. ++...+.+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 5899999999999999999963 22345678899999998 233455666 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887654446899999999999965 34444443332 67999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 159 ~~~~~ 163 (221)
T cd04148 159 VRQIR 163 (221)
T ss_pred HHHHH
Confidence 98763
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=5.8e-25 Score=158.96 Aligned_cols=132 Identities=17% Similarity=0.284 Sum_probs=112.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
.||+++|++|||||||++++.. .....+.+.+||+||++++...+..++..+|++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 6899999999999999999997 22234567899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
+++..+++.+..|+..+++.....+.|+++|+||+|+.. ..+.++..... ++||++|.|+.++|.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999998766557899999999999874 34444433332 56999999999999999987
Q ss_pred Hh
Q psy11510 169 VS 170 (171)
Q Consensus 169 i~ 170 (171)
+.
T Consensus 162 ~~ 163 (180)
T cd04137 162 IE 163 (180)
T ss_pred HH
Confidence 64
No 117
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=6.2e-25 Score=157.96 Aligned_cols=130 Identities=17% Similarity=0.269 Sum_probs=105.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+.||+++|++|||||||++++.. ++...+.+.+||++|++.+..+++.++.++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36899999999999999999997 2234567899999999999988888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHH---------HHhhhc
Q psy11510 98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNV---------SEKATK 153 (171)
Q Consensus 98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~---------~~~sa~ 153 (171)
|+++.++|+.+. .|+..+... .++.|+++|+||+|+.+. +..++.++. .++||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 999999998886 466666432 358999999999998642 112222222 267999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy11510 154 VKLNKQSKFQVLLNEV 169 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~i 169 (171)
+|.|++++|+.++++.
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998765
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=8.7e-25 Score=153.53 Aligned_cols=128 Identities=27% Similarity=0.400 Sum_probs=110.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+||+++|++|||||||++++.+ .....+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999987 2234577899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--CCCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE--GALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++++++.+..|+..+.... ..+.|+++++||+|+. .....+++.++. ++|++++.|++++|+.+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999988886543 2579999999999995 455666666665 5699999999999998863
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=9.7e-25 Score=154.15 Aligned_cols=130 Identities=22% Similarity=0.347 Sum_probs=111.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
||+++|++|||||||++++.+ ..+..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999986 233357889999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i 169 (171)
++++++.++..|+..+.......++|+++|+||+|+.. ..+.+++..+. +.|++++.|++++|+.+++.+
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 99999999999998887665446899999999999976 34445554444 569999999999999998764
No 120
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=1.4e-24 Score=152.62 Aligned_cols=128 Identities=32% Similarity=0.579 Sum_probs=108.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 102 (171)
.|+++|++|||||||++++.+ ...+.+.+.+||++|++.++..+..+++.+|++++|+|+++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 378999999999999999998 233457789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-------------HHhhhccCCCHHHHHHHHHH
Q psy11510 103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-------------SEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-------------~~~sa~~~~~v~~~f~~l~~ 167 (171)
.++.....|+..++......++|+++|+||+|+.+....+++.+. .++|+++|.|++++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 999988888888877655578999999999999775444433322 25699999999999999875
No 121
>KOG0083|consensus
Probab=99.93 E-value=7.9e-27 Score=157.06 Aligned_cols=127 Identities=28% Similarity=0.465 Sum_probs=111.6
Q ss_pred EEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC
Q psy11510 43 LLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 100 (171)
Q Consensus 43 liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 100 (171)
++|++++|||+|+-++.. ++...+++++|||+||++|++....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999988876 5667889999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 101 DKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 101 ~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+..||++++.|+.++-+. ....+.+.+++||||+.. .+..++.++.. |+||++|-||+-.|-.++++..
T Consensus 82 nkasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred cchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 999999999999999543 446789999999999954 55666655544 8899999999999999998764
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=2.8e-24 Score=159.95 Aligned_cols=134 Identities=15% Similarity=0.252 Sum_probs=112.7
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
+....+||+++|+.|||||||++++.. .+...+.+++||++|++.+..++..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 356789999999999999999987765 13456899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-CCHHHHHHH--------HHhhhccCCCHHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA-LTPEDIKNV--------SEKATKVKLNKQSKFQ 163 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~--------~~~sa~~~~~v~~~f~ 163 (171)
+++|||+++..+|..+..|+..+... ..++|+++++||+|+.+. ...+.. .+ .++|+++|.|++++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQI-TFHRKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHH-HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888654 257999999999998653 333322 22 2679999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
++++.++
T Consensus 162 ~ia~~l~ 168 (215)
T PTZ00132 162 WLARRLT 168 (215)
T ss_pred HHHHHHh
Confidence 9998875
No 123
>KOG0075|consensus
Probab=99.92 E-value=2.6e-25 Score=151.75 Aligned_cols=133 Identities=31% Similarity=0.534 Sum_probs=122.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+.++.+.++|..++|||||++.+.. ++.+.+.+.+||.+||.+|+++|+.|++.++++++|+|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 4678999999999999999998776 66778999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
+++++.+.-..+.+++++..+...++|+++.|||.|++++.+..++.+-+ ..|++...|++.+.+++
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 99999999999999999999888999999999999999999988887776 33899999999999999
Q ss_pred HHH
Q psy11510 166 LNE 168 (171)
Q Consensus 166 ~~~ 168 (171)
++.
T Consensus 178 i~h 180 (186)
T KOG0075|consen 178 IEH 180 (186)
T ss_pred HHH
Confidence 864
No 124
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=1.6e-24 Score=154.91 Aligned_cols=127 Identities=14% Similarity=0.244 Sum_probs=103.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+||+++|++|||||||++++.+ .++..+.+.+||+||++.+....+.+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 5899999999999999999996 23446779999999999888888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC-------------HHHHHHHH---------HhhhccC
Q psy11510 99 SADKRRLEDCAR-ELHELLQEERLAGATLLVFANKQDIEGALT-------------PEDIKNVS---------EKATKVK 155 (171)
Q Consensus 99 ~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~~~~~~~---------~~sa~~~ 155 (171)
++++.+|..... |+..+... .++.|+++|+||+|+..+.+ .++..+.. +.||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999987664 55555433 24899999999999976432 33333332 6699999
Q ss_pred CCHHHHHHHHHH
Q psy11510 156 LNKQSKFQVLLN 167 (171)
Q Consensus 156 ~~v~~~f~~l~~ 167 (171)
.|+.++|+.+++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 125
>KOG0076|consensus
Probab=99.92 E-value=2.4e-25 Score=155.80 Aligned_cols=138 Identities=30% Similarity=0.529 Sum_probs=124.0
Q ss_pred CCCCCceeEEEEEeCCCCcHHHHHHHHhc------------------------cccCceEEEEEecCCccchhHHHHHhh
Q psy11510 32 RPQVSNVAVVSLLRNKNGGETLILKKKKM------------------------IMTFRFKLNIWDVGGQKSLRSYWRNYF 87 (171)
Q Consensus 32 ~~~~~~~~ki~liG~~~~GKttli~~~~~------------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~ 87 (171)
+...+..+.|+++|..++|||||+.+... +.-...++.+||.+||+..+++|..||
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHH
Confidence 34467889999999999999999999887 222356789999999999999999999
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHH--------------hhhc
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSE--------------KATK 153 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--------------~sa~ 153 (171)
..+|++|+++|++++++|++....+..+..+....++|+++.+||.|+++++...++..... .||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 99999999999999999999999999999988889999999999999999988888887763 4999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy11510 154 VKLNKQSKFQVLLNEV 169 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~i 169 (171)
+|+||++...++.+.+
T Consensus 171 ~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKL 186 (197)
T ss_pred hcccHHHHHHHHHHHH
Confidence 9999999999998764
No 126
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.92 E-value=4.3e-24 Score=155.74 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=106.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+.||+++|+.|+|||||++++.. .++..+.+.+||++|++.+....+.+++++|++++||
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 46999999999999999999984 2333466899999999988887778889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC------------CCHHHHHHH---------HHhhhccC
Q psy11510 98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA------------LTPEDIKNV---------SEKATKVK 155 (171)
Q Consensus 98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~---------~~~sa~~~ 155 (171)
|+++.++|+.+. .|+..+... .+++|+++|+||+|+.+. +..++...+ .++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 999999999987 577777543 357999999999998541 222333322 26799999
Q ss_pred CCHHHHHHHHHHHHh
Q psy11510 156 LNKQSKFQVLLNEVS 170 (171)
Q Consensus 156 ~~v~~~f~~l~~~i~ 170 (171)
.|++++|+.+++.++
T Consensus 159 ~~v~~~f~~l~~~~~ 173 (187)
T cd04129 159 EGVDDVFEAATRAAL 173 (187)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 127
>KOG0395|consensus
Probab=99.92 E-value=3.4e-24 Score=157.12 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=120.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+.+||+++|.+|||||+|..+|.. +++....+.|+||+|++.+..+...+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 578999999999999999999998 566677888999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
|+++++.||+.+..++..+.+......+|+++||||+|+.. .++.++..... |+||+.+.|++++|..+.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 99999999999999999997766667799999999999987 67888765553 889999999999999999
Q ss_pred HHH
Q psy11510 167 NEV 169 (171)
Q Consensus 167 ~~i 169 (171)
+.+
T Consensus 162 r~~ 164 (196)
T KOG0395|consen 162 REI 164 (196)
T ss_pred HHH
Confidence 875
No 128
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.91 E-value=1.1e-23 Score=155.41 Aligned_cols=99 Identities=22% Similarity=0.337 Sum_probs=87.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------c-----ccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------I-----MTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~-----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
+||+++|+.|||||||++++.+ . ....+.+++||++|++.|..+++.+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999987 1 1245789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhcc------------------ccCCCeEEEEEeCCCCCC
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEE------------------RLAGATLLVFANKQDIEG 137 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~p~ivv~nK~Dl~~ 137 (171)
+|+|||++++.||+.+..|+.++.... ...++|+++||||+|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999999997632 124799999999999965
No 129
>KOG0074|consensus
Probab=99.91 E-value=5.9e-24 Score=144.32 Aligned_cols=133 Identities=39% Similarity=0.621 Sum_probs=118.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccC-ceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
..+.+||+++|..++|||||++++.. +... .+.+++||++||...++.|..||.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 57899999999999999999999998 3333 488999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~ 164 (171)
|+++...|+++...+.+++++.+...+|+.+..||+|+.-+.+.+++..-+ ++||.+++++.+-.++
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 999999999999999999999999999999999999998777777665554 6789999888887777
Q ss_pred HHH
Q psy11510 165 LLN 167 (171)
Q Consensus 165 l~~ 167 (171)
++.
T Consensus 174 v~s 176 (185)
T KOG0074|consen 174 VQS 176 (185)
T ss_pred hhc
Confidence 653
No 130
>PLN00023 GTP-binding protein; Provisional
Probab=99.90 E-value=8.4e-23 Score=158.42 Aligned_cols=114 Identities=16% Similarity=0.241 Sum_probs=96.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc-------------cCceEEEEEecCCccchh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM-------------TFRFKLNIWDVGGQKSLR 80 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~-------------~~~~~~~i~d~~g~~~~~ 80 (171)
+...+||+++|+.|||||||++++.. ++ ...+.+++||++|+++|+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 56779999999999999999999987 11 124679999999999999
Q ss_pred HHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccc-----------cCCCeEEEEEeCCCCCCC--------CCH
Q psy11510 81 SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEER-----------LAGATLLVFANKQDIEGA--------LTP 141 (171)
Q Consensus 81 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ivv~nK~Dl~~~--------~~~ 141 (171)
.+++.|+++++++|+|||+++..+|+.+..|+..+..... ..++|+++|+||+|+.+. +..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999965421 135899999999999652 245
Q ss_pred HHHHHHH
Q psy11510 142 EDIKNVS 148 (171)
Q Consensus 142 ~~~~~~~ 148 (171)
++.+.++
T Consensus 178 e~a~~~A 184 (334)
T PLN00023 178 DAARQWV 184 (334)
T ss_pred HHHHHHH
Confidence 6666665
No 131
>KOG0072|consensus
Probab=99.89 E-value=2e-23 Score=142.06 Aligned_cols=139 Identities=35% Similarity=0.547 Sum_probs=126.2
Q ss_pred cCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 31 HRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 31 ~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.++.+.+..+|+++|..|+||||+++++.- +.+++.++++||.+|+-..++.|+-||.+.+++|
T Consensus 11 ~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 11 ALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred HhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 344466899999999999999999999986 6778899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSK 161 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~ 161 (171)
+|+|+++.+........+..+++++...+..+++++||+|...+....|+...+ ++||.+|+|++..
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 999999999998888889999999999999999999999999887777766665 7799999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
++|+.+.+
T Consensus 171 ~DWL~~~l 178 (182)
T KOG0072|consen 171 MDWLQRPL 178 (182)
T ss_pred HHHHHHHH
Confidence 99998765
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=3.2e-22 Score=144.34 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=98.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCccchh
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQKSLR 80 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~~~~~ 80 (171)
+|+++|..++|||||++++.+ . +...+.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999964 0 2346778999999999999
Q ss_pred HHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHH--------HH
Q psy11510 81 SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNV--------SE 149 (171)
Q Consensus 81 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~--------~~ 149 (171)
..+..+++.+|++++|+|+++..+++....|.... ..++|+++|+||+|+.+.... +++.+. .+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAIL 156 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEE
Confidence 99999999999999999999877666655543322 147899999999999653221 222222 25
Q ss_pred hhhccCCCHHHHHHHHHHHH
Q psy11510 150 KATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 150 ~sa~~~~~v~~~f~~l~~~i 169 (171)
+||++|.|++++|+.+++.+
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 157 VSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred eeccCCCCHHHHHHHHHhhC
Confidence 79999999999999998764
No 133
>KOG0393|consensus
Probab=99.89 E-value=4.2e-23 Score=149.39 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=113.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+|+++||+.++|||+|+..+.. + ++..+.+.+|||+||+.|..+++.-+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 578999999999999999988875 6 4888999999999999999888888999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510 96 VVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA 151 (171)
Q Consensus 96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s 151 (171)
+|++.++.||+++. +|+.++... .+++|+++||+|.||.+ .+..++..... |+|
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999965 888888554 48999999999999974 23333333332 789
Q ss_pred hccCCCHHHHHHHHHHHHh
Q psy11510 152 TKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~~i~ 170 (171)
|++..|++++|+.+++..+
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999999998765
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.88 E-value=1.1e-21 Score=140.08 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=92.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh---------HHHHHhhhCCC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR---------SYWRNYFESTD 91 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~~~~ 91 (171)
+|+++|.+|||||||++++.+ ...++..+.+|||||+.... .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 799999999999999999998 12234688999999974210 01111123468
Q ss_pred EEEEEEeCCChhhH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHH
Q psy11510 92 GLIWVVDSADKRRL--EDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSK 161 (171)
Q Consensus 92 ~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~ 161 (171)
++++|+|+++..++ +....|+..+... ..+.|+++|+||+|+.+.....+..++. ++||++|.|++++
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 99999999987654 5555666666432 2479999999999997633322222222 6699999999999
Q ss_pred HHHHHHHHh
Q psy11510 162 FQVLLNEVS 170 (171)
Q Consensus 162 f~~l~~~i~ 170 (171)
|+++++.++
T Consensus 160 ~~~l~~~~~ 168 (168)
T cd01897 160 KNKACELLL 168 (168)
T ss_pred HHHHHHHhC
Confidence 999988753
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=8.8e-22 Score=140.72 Aligned_cols=129 Identities=19% Similarity=0.136 Sum_probs=95.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------cccCc-eEEEEEecCCcc----chhHHHHHh---hhCCCE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------IMTFR-FKLNIWDVGGQK----SLRSYWRNY---FESTDG 92 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------~~~~~-~~~~i~d~~g~~----~~~~~~~~~---~~~~~~ 92 (171)
+|+++|.+|||||||++++.+ +...+ ..+.+|||||+. ..+.+...+ +..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 589999999999999999985 11223 388999999963 222233333 346999
Q ss_pred EEEEEeCCCh-hhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCH-HHHHHHH---------HhhhccCCCHHH
Q psy11510 93 LIWVVDSADK-RRLEDCARELHELLQEER-LAGATLLVFANKQDIEGALTP-EDIKNVS---------EKATKVKLNKQS 160 (171)
Q Consensus 93 ii~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~---------~~sa~~~~~v~~ 160 (171)
+++|+|++++ .+++.+..|...+.+... ..++|+++|+||+|+.+.... +.+.... ++||+++.|+++
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDE 161 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHH
Confidence 9999999999 788888888877754321 247999999999999763332 2222221 569999999999
Q ss_pred HHHHHHHH
Q psy11510 161 KFQVLLNE 168 (171)
Q Consensus 161 ~f~~l~~~ 168 (171)
+|+.+++.
T Consensus 162 l~~~i~~~ 169 (170)
T cd01898 162 LLRKLAEL 169 (170)
T ss_pred HHHHHHhh
Confidence 99999864
No 136
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=1.3e-21 Score=132.38 Aligned_cols=93 Identities=25% Similarity=0.405 Sum_probs=76.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
||+++|+.|||||||++++.+ .......+.+||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 799999999999999999997 222334588999999999888888889999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHHhccccCCCeEEEEEeCCC
Q psy11510 97 VDSADKRRLEDCARE---LHELLQEERLAGATLLVFANKQD 134 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~~p~ivv~nK~D 134 (171)
||++++.+|+++..+ +..+.. ...++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence 999999999987554 444532 235699999999998
No 137
>KOG4252|consensus
Probab=99.86 E-value=4.7e-22 Score=140.17 Aligned_cols=134 Identities=13% Similarity=0.291 Sum_probs=115.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
....+|++++|+.++||||+++++.. +...++...+||++||+.|..+...|++++.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 55689999999999999999999995 444566678999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++||+.++..||+...+|+.++..+ ...+|.++|-||+|+.+ .+..++++... .+|++...||-++|.
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~ 174 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA 174 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999554 47899999999999976 34444443332 679999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.++....
T Consensus 175 YLaeK~~ 181 (246)
T KOG4252|consen 175 YLAEKLT 181 (246)
T ss_pred HHHHHHH
Confidence 9987643
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=1.4e-21 Score=136.09 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=86.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--cc-----cCceEEEEEecCCcc-----chhHHHHHhhhCCCEEEEEEeCCChhhHHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--IM-----TFRFKLNIWDVGGQK-----SLRSYWRNYFESTDGLIWVVDSADKRRLED 107 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--~~-----~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 107 (171)
||+++|++|||||||++++.+ .. .....-.+||+||+. .+..+.+ .++++|++++|+|++++.++..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~~t~~~~~~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~ 80 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYKKTQAVEYNDGAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP 80 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccccceeEEEcCeeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC
Confidence 899999999999999999998 11 111222789999972 3444444 4789999999999999988754
Q ss_pred HHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHHHHHHHH
Q psy11510 108 CARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 108 ~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~ 166 (171)
..|.. .. ..|+++|+||+|+.+ ....++..++. ++||++|.|++++|+.++
T Consensus 81 -~~~~~-~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 81 -PGFAS-IF------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -hhHHH-hc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 23322 21 249999999999965 33444433332 569999999999998875
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.86 E-value=1.1e-20 Score=140.53 Aligned_cols=133 Identities=23% Similarity=0.308 Sum_probs=104.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+||+++|++|||||||++++.. .....+.+.+||++|++.++.+++.|+.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 349999999999999999999997 12226779999999999999999999999999999
Q ss_pred EEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--------------HHHHH-----------HHH
Q psy11510 96 VVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP--------------EDIKN-----------VSE 149 (171)
Q Consensus 96 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~--------------~~~~~-----------~~~ 149 (171)
|+|.++.. +++....|...+.... ..+.|+++|+||+|+...... ..... ..+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 99999944 4555667777775432 247999999999999774211 11111 115
Q ss_pred hhhc--cCCCHHHHHHHHHHHHh
Q psy11510 150 KATK--VKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 150 ~sa~--~~~~v~~~f~~l~~~i~ 170 (171)
+|++ ++.++.++|..+++.+.
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHH
Confidence 5888 99999999999887764
No 140
>PTZ00099 rab6; Provisional
Probab=99.86 E-value=7.5e-21 Score=137.56 Aligned_cols=108 Identities=21% Similarity=0.363 Sum_probs=93.0
Q ss_pred ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CC
Q psy11510 62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--AL 139 (171)
Q Consensus 62 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~ 139 (171)
++..+.+.+|||+|++++..+++.+++++|++++|||++++.+|+.+..|+..++... .+++|+++|+||+|+.+ .+
T Consensus 25 ~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v 103 (176)
T PTZ00099 25 DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKV 103 (176)
T ss_pred CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCC
Confidence 3457899999999999999999999999999999999999999999999999987653 35799999999999964 45
Q ss_pred CHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 140 TPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 140 ~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+.++..... ++||++|.||+++|+++++.+.
T Consensus 104 ~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 104 TYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 665555543 6799999999999999998763
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=1.5e-20 Score=133.29 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------cccC-ceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------IMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
+.|+++|.+|||||||++++.+ .... ...+.+|||||++++......+++++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 3689999999999999999973 1112 5678999999999987777777889999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH-----------HhhhccCCC
Q psy11510 96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS-----------EKATKVKLN 157 (171)
Q Consensus 96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~-----------~~sa~~~~~ 157 (171)
|+|+++ .++++.+. .+ ... ...|+++|+||+|+.+... .+++.+.+ ++||++|.|
T Consensus 81 V~d~~~~~~~~~~~~~~----~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 81 VVAADEGIMPQTREHLE----IL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEECCCCccHhHHHHHH----HH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 999987 33333322 11 111 2349999999999976311 12222222 459999999
Q ss_pred HHHHHHHHHH
Q psy11510 158 KQSKFQVLLN 167 (171)
Q Consensus 158 v~~~f~~l~~ 167 (171)
++++|+.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 142
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.85 E-value=1.9e-20 Score=130.92 Aligned_cols=127 Identities=18% Similarity=0.312 Sum_probs=100.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCc--eEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFR--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
.+||+++|.+|+|||||++++.. ....+ +.+.+||+||+..+..++..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998 22233 7789999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCCHHHHHHHH
Q psy11510 97 VDSADK-RRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 97 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l 165 (171)
+|.... .++.... .|...+..... .+.|+++++||+|+......++..... +.||++|.|+.++|+.+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998887 6776665 66666654432 289999999999997632222222222 66999999999999876
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.85 E-value=1e-20 Score=139.54 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=96.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------ccc-CceEEEEEecCCccc---------hhHHHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMT-FRFKLNIWDVGGQKS---------LRSYWRN 85 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~-~~~~~~i~d~~g~~~---------~~~~~~~ 85 (171)
.++.++|+++|++|||||||++++.+ +.. ....+.+||+||... +...+ .
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 35568999999999999999999997 111 123789999999732 22222 2
Q ss_pred hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH-----HHHHHHhhhccCCCHHH
Q psy11510 86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED-----IKNVSEKATKVKLNKQS 160 (171)
Q Consensus 86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~~~~~~~sa~~~~~v~~ 160 (171)
.+.++|++++|+|++++.++.....|...+ ......++|+++|+||+|+.+...... .....++||++|.|+++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence 356899999999999988887766655444 333345799999999999966322110 01123679999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+++.+.+.+
T Consensus 196 l~~~L~~~~ 204 (204)
T cd01878 196 LLEAIEELL 204 (204)
T ss_pred HHHHHHhhC
Confidence 999998753
No 144
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=3.8e-20 Score=136.76 Aligned_cols=109 Identities=28% Similarity=0.369 Sum_probs=91.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------cc----cCceEEEEEecCCccchhHHHHHhhhCC-CEEEEEEe
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------IM----TFRFKLNIWDVGGQKSLRSYWRNYFEST-DGLIWVVD 98 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------~~----~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~ii~v~d 98 (171)
+|+++|++|||||||++++.. .. .....+.+||+||+.+++..+..+++.+ +++|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999987 01 2356789999999999999999999998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 99 SADK-RRLEDCARELHELLQEE--RLAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 99 ~~~~-~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
+++. .++....+++..++... ..+++|+++++||+|+..+.+.+.+++.+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~l 134 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQL 134 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHH
Confidence 9997 78888888887776532 22689999999999998877776666665
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=4.8e-20 Score=151.66 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=93.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHhhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNYFE 88 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~ 88 (171)
...+|+++|.+|||||||++++.+ ....+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 347899999999999999999997 122345688999999763 3344566788
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHH
Q psy11510 89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQS 160 (171)
Q Consensus 89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~ 160 (171)
.+|++++|+|+++..++.. ..+ ...+.. .++|+++|+||+|+.... .+ ..+. .++||++|.|+++
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i-~~~l~~---~~~piilV~NK~Dl~~~~-~~-~~~~~~~g~~~~~~iSA~~g~gi~e 189 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAV-ARVLRR---SGKPVILAANKVDDERGE-AD-AAALWSLGLGEPHPVSALHGRGVGD 189 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHH-HHHHHH---cCCCEEEEEECccCCccc-hh-hHHHHhcCCCCeEEEEcCCCCCcHH
Confidence 9999999999998766533 222 233232 479999999999996521 11 1121 1579999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+|+.+++.+
T Consensus 190 L~~~i~~~l 198 (472)
T PRK03003 190 LLDAVLAAL 198 (472)
T ss_pred HHHHHHhhc
Confidence 999998765
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.83 E-value=5.2e-20 Score=145.99 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=95.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------ccc-CceEEEEEecCCc---------cchhHHHHHhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMT-FRFKLNIWDVGGQ---------KSLRSYWRNYF 87 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~-~~~~~~i~d~~g~---------~~~~~~~~~~~ 87 (171)
...+|+++|.+|||||||++++.+ +.. ....+.+|||+|. +.|+..+. .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HH
Confidence 458999999999999999999998 111 3468899999997 22333222 36
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH----HHHHhhhccCCCHHHHHH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK----NVSEKATKVKLNKQSKFQ 163 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~sa~~~~~v~~~f~ 163 (171)
.++|++++|+|++++.+++.+..|.. ++......++|+++|+||+|+.+........ ....+||++|.|++++++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~-~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEK-VLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHH-HHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHH
Confidence 78999999999999988877655433 3343334578999999999996521111111 123579999999999999
Q ss_pred HHHHH
Q psy11510 164 VLLNE 168 (171)
Q Consensus 164 ~l~~~ 168 (171)
.+.+.
T Consensus 346 ~I~~~ 350 (351)
T TIGR03156 346 AIAER 350 (351)
T ss_pred HHHhh
Confidence 98764
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.6e-19 Score=148.58 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=109.4
Q ss_pred eeeccceeeeccceecccc-------cccCCC-------CCceeEEEEEeCCCCcHHHHHHHHhc---------------
Q psy11510 10 WDVGGQKSLRSYSYYGMGM-------LRHRPQ-------VSNVAVVSLLRNKNGGETLILKKKKM--------------- 60 (171)
Q Consensus 10 ~~~~~~~~~~~~~~~~m~~-------~~~~~~-------~~~~~ki~liG~~~~GKttli~~~~~--------------- 60 (171)
|.+|...+++.+|.++-|. ++.... ....++|+++|.+|||||||++++.+
T Consensus 169 ~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d 248 (472)
T PRK03003 169 WSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVD 248 (472)
T ss_pred HhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCC
Confidence 4455566778888777665 111111 13468999999999999999999997
Q ss_pred -----cccCceEEEEEecCCc----------cchhHHH-HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCC
Q psy11510 61 -----IMTFRFKLNIWDVGGQ----------KSLRSYW-RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124 (171)
Q Consensus 61 -----~~~~~~~~~i~d~~g~----------~~~~~~~-~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 124 (171)
+...+..+.+|||+|. +.+..+. ..+++++|++++|+|++++.++.... ++..+.. .++
T Consensus 249 ~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~ 323 (472)
T PRK03003 249 PVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGR 323 (472)
T ss_pred cceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence 2234556789999995 3333332 34578999999999999988887663 3444432 579
Q ss_pred eEEEEEeCCCCCCCCCH----HHHHHH---------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 125 TLLVFANKQDIEGALTP----EDIKNV---------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 125 p~ivv~nK~Dl~~~~~~----~~~~~~---------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
|+++|+||+|+.+.... +++.+. .++||++|.|++++|+.+++.+
T Consensus 324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred CEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999753211 122221 1569999999999999998754
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.3e-19 Score=127.05 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=91.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------ccc---CceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------IMT---FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.|+++|.+|+|||||++++.. ... ....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999987 112 2567899999999999999998999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHH--------------HHHhhhccCCCHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKN--------------VSEKATKVKLNKQS 160 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~--------------~~~~sa~~~~~v~~ 160 (171)
|+++...-+. ...+..+ .. .++|+++|+||+|+...... +++.. ..++|+++|.|+.+
T Consensus 82 d~~~~~~~~~-~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 82 AADDGVMPQT-IEAIKLA-KA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ECCCCccHHH-HHHHHHH-HH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 9987432111 1112222 22 47899999999998753211 11111 12559999999999
Q ss_pred HHHHHHHH
Q psy11510 161 KFQVLLNE 168 (171)
Q Consensus 161 ~f~~l~~~ 168 (171)
+++.+.+.
T Consensus 157 l~~~l~~~ 164 (168)
T cd01887 157 LLEAILLL 164 (168)
T ss_pred HHHHHHHh
Confidence 99999764
No 149
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2e-19 Score=141.71 Aligned_cols=131 Identities=18% Similarity=0.088 Sum_probs=98.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------ccc-CceEEEEEecCCccc----hhHHH---HHhhhCCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMT-FRFKLNIWDVGGQKS----LRSYW---RNYFESTD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~-~~~~~~i~d~~g~~~----~~~~~---~~~~~~~~ 91 (171)
-.|.++|.+|||||||++++.+ +.. +...+.+||+||.-. ...+. -.+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 5789999999999999999986 222 345789999999632 11233 33456799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCC--HHHHHHHH--------HhhhccCCCHHH
Q psy11510 92 GLIWVVDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALT--PEDIKNVS--------EKATKVKLNKQS 160 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~--------~~sa~~~~~v~~ 160 (171)
++++|+|+++.++++.+..|..++.... ...++|+++|+||+|+.+... .+....+. ++||++++|+++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDE 318 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHH
Confidence 9999999998888988888888775432 225799999999999976322 22232221 469999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+++.+.+.+
T Consensus 319 L~~~L~~~l 327 (335)
T PRK12299 319 LLRALWELL 327 (335)
T ss_pred HHHHHHHHH
Confidence 999998765
No 150
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=2e-19 Score=142.21 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=91.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-hhHHH-------HHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-LRSYW-------RNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-~~~~~-------~~~ 86 (171)
..+..+|+++|.+|||||||++++.+ ...++.++.+|||||+.. +..+. ...
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 35678999999999999999999988 223456789999999842 22221 123
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------HhhhccCC
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------EKATKVKL 156 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~sa~~~~ 156 (171)
+.++|++++|+|+++ ++.....++...+.. .+.|+++|+||+|+.+. ..+++.+.+ .+||++|.
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGK 202 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence 678999999999765 344444333333232 25677889999999754 333444433 45999999
Q ss_pred CHHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNEV 169 (171)
Q Consensus 157 ~v~~~f~~l~~~i 169 (171)
|++++|+.+.+..
T Consensus 203 gv~eL~~~L~~~l 215 (339)
T PRK15494 203 NIDGLLEYITSKA 215 (339)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998653
No 151
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.82 E-value=3.3e-19 Score=123.22 Aligned_cols=124 Identities=25% Similarity=0.385 Sum_probs=99.4
Q ss_pred EEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC
Q psy11510 43 LLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 101 (171)
Q Consensus 43 liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 101 (171)
++|++|+|||||++++.+ .......+.+||++|+..+...+..+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999986 11236778999999999888888889999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH--HH---------HHhhhccCCCHHHHHHHHH
Q psy11510 102 KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK--NV---------SEKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 102 ~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~---------~~~sa~~~~~v~~~f~~l~ 166 (171)
+.++.....|+..........++|+++++||+|+......+... .. .++|+..+.|+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99998888774444444455789999999999997744333321 11 1669999999999999875
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=2e-19 Score=146.47 Aligned_cols=128 Identities=15% Similarity=0.212 Sum_probs=96.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 86 (171)
.++.+||+++|++|||||||++++.+ +..++..+.+|||||+..+... ...+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 34678999999999999999999987 2334567899999998655432 2356
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-----HHhhhccCCCHHHH
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-----SEKATKVKLNKQSK 161 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~sa~~~~~v~~~ 161 (171)
++++|++++|+|++++.+++.. |+..+.. .++|+++|+||+|+.+. +.++..+. .++||++ .|+++.
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhhcCCceEEEEEec-CCHHHH
Confidence 7899999999999998887664 5555522 47899999999999754 22222221 3568887 699999
Q ss_pred HHHHHHHHh
Q psy11510 162 FQVLLNEVS 170 (171)
Q Consensus 162 f~~l~~~i~ 170 (171)
|+.+.+.+.
T Consensus 352 ~~~L~~~i~ 360 (442)
T TIGR00450 352 VDLLTQKIN 360 (442)
T ss_pred HHHHHHHHH
Confidence 999988763
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=5.2e-19 Score=139.20 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=96.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCc-eEEEEEecCCccch----hHHHHH---hhhCC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFR-FKLNIWDVGGQKSL----RSYWRN---YFEST 90 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~-~~~~i~d~~g~~~~----~~~~~~---~~~~~ 90 (171)
.-.|+++|.+|||||||++++.. +...+ ..+.+||+||.... ..+... +++++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 36799999999999999999996 22223 67899999997421 123333 35579
Q ss_pred CEEEEEEeCCCh---hhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCC
Q psy11510 91 DGLIWVVDSADK---RRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLN 157 (171)
Q Consensus 91 ~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~ 157 (171)
+++++|+|+++. ++++.+..|..++.... ...++|+++|+||+|+.+....++..+.+ ++||++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 999999999976 67777777777664432 23579999999999997643222332222 459999999
Q ss_pred HHHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNEV 169 (171)
Q Consensus 158 v~~~f~~l~~~i 169 (171)
++++++.+.+.+
T Consensus 317 I~eL~~~I~~~l 328 (329)
T TIGR02729 317 LDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.81 E-value=2.2e-19 Score=128.74 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=92.5
Q ss_pred EEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccc----hhHH---HHHhhhCCCEEEE
Q psy11510 43 LLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKS----LRSY---WRNYFESTDGLIW 95 (171)
Q Consensus 43 liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~----~~~~---~~~~~~~~~~ii~ 95 (171)
++|++|||||||++++.+ .... ...+.+||+||... .+.+ +..+++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999987 1223 67789999999632 1112 2345678999999
Q ss_pred EEeCCCh------hhHHHHHHHHHHHHhccc------cCCCeEEEEEeCCCCCCCCCHHHH--HHHH--------Hhhhc
Q psy11510 96 VVDSADK------RRLEDCARELHELLQEER------LAGATLLVFANKQDIEGALTPEDI--KNVS--------EKATK 153 (171)
Q Consensus 96 v~d~~~~------~s~~~~~~~~~~i~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~--------~~sa~ 153 (171)
|+|+++. .++++...|...+..... ..+.|+++|+||+|+.......+. .... ++||+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK 160 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence 9999988 578887777777754332 147999999999999763322221 1111 56999
Q ss_pred cCCCHHHHHHHHHHH
Q psy11510 154 VKLNKQSKFQVLLNE 168 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~ 168 (171)
++.|++++++.+++.
T Consensus 161 ~~~gl~~l~~~l~~~ 175 (176)
T cd01881 161 TEEGLDELIRAIYEL 175 (176)
T ss_pred hhcCHHHHHHHHHhh
Confidence 999999999998764
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=2.9e-19 Score=125.63 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=88.6
Q ss_pred EEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH--------HHHHhhhCCCEE
Q psy11510 42 SLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFESTDGL 93 (171)
Q Consensus 42 ~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~~i 93 (171)
+++|.+|+|||||++++.. ....+..+.+||+||...+.. .+...++++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999986 222346789999999887544 334567889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHH-----HHHHhhhccCCCHHHHHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP-EDIK-----NVSEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~-----~~~~~sa~~~~~v~~~f~~l~~ 167 (171)
++|+|+.+..+.... ++...+.. .+.|+++|+||+|+.+.... +... ...++|+++|.|++++|+.+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 999999875444332 22333332 36999999999999773222 1111 1125799999999999999987
Q ss_pred HH
Q psy11510 168 EV 169 (171)
Q Consensus 168 ~i 169 (171)
.+
T Consensus 156 ~~ 157 (157)
T cd01894 156 LL 157 (157)
T ss_pred hC
Confidence 53
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.81 E-value=7.8e-19 Score=128.69 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=75.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhHHH
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRSYW 83 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~~~ 83 (171)
.+|+++|..++|||||++++.+ +......+++||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999984 12235678999999999999999
Q ss_pred HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
..+++++|++++|+|+++.. +.....++..+.. .++|+++|+||+|+.+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPD 131 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 99999999999999998742 3333344444422 4789999999999975
No 157
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=9.5e-20 Score=134.02 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=89.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------ccc-----CceEEEEEecCC-----------ccchhHHHHHhhh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------IMT-----FRFKLNIWDVGG-----------QKSLRSYWRNYFE 88 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------~~~-----~~~~~~i~d~~g-----------~~~~~~~~~~~~~ 88 (171)
+.+.++|+++|.+|||||||++++.+ ... ..-.+.+||||| ++.++..+..++.
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999987 000 001578999999 6777777777765
Q ss_pred ----CCCEEEEEEeCCChhhH-HH--------HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHH-------
Q psy11510 89 ----STDGLIWVVDSADKRRL-ED--------CARELHELLQEERLAGATLLVFANKQDIEGAL--TPEDIKN------- 146 (171)
Q Consensus 89 ----~~~~ii~v~d~~~~~s~-~~--------~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~------- 146 (171)
.++++++|+|.++...+ +. ....+...+. ..++|+++|+||+|+.+.. ..+++.+
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP 162 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence 35788888887653221 00 0111122222 2479999999999996532 1122222
Q ss_pred -------HHHhhhccCCCHHHHHHHHHHHH
Q psy11510 147 -------VSEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 147 -------~~~~sa~~~~~v~~~f~~l~~~i 169 (171)
..++||++| |++++|+++++.+
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 135699999 9999999998764
No 158
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.81 E-value=3.2e-19 Score=126.91 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=87.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc---cccCceEE-----EEEecCCcc-----chhHHHHHhhhCCCEEEEEEeCCChhhHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM---IMTFRFKL-----NIWDVGGQK-----SLRSYWRNYFESTDGLIWVVDSADKRRLE 106 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~---~~~~~~~~-----~i~d~~g~~-----~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 106 (171)
+|+++|.+|+|||||++++.+ .......+ .+||+||.. .++.+. ..++++|++++|+|+++..++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~v~~~~~~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~ 81 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL 81 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccCccceEEEECCCCcccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc
Confidence 799999999999999999888 11111111 269999973 222232 2368999999999999887652
Q ss_pred HHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 107 DCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
..|+..+ ..++|+++++||+|+.+ .+.+.+.+++ ++||++|+|++++|+.+++.+
T Consensus 82 --~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 82 --PAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred --CHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 2344443 13679999999999965 3444444443 569999999999999998754
No 159
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.4e-18 Score=123.17 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=105.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------cccCceEEEEEecCCccchhHHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------IMTFRFKLNIWDVGGQKSLRSYWR 84 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------~~~~~~~~~i~d~~g~~~~~~~~~ 84 (171)
.....||+++|+.++||||+++++.. ...++..+.+++||||++|.-+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 45689999999999999999999998 223347889999999999999999
Q ss_pred HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHh----------hhcc
Q psy11510 85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEK----------ATKV 154 (171)
Q Consensus 85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----------sa~~ 154 (171)
.+++++.+.++++|++.+..+ .....+.-+ ... ..+|++|++||+|+++..+.+.++++++. +|..
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e 162 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATE 162 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeeccc
Confidence 999999999999999999998 333333333 322 12999999999999999999999998844 5677
Q ss_pred CCCHHHHHHHHHH
Q psy11510 155 KLNKQSKFQVLLN 167 (171)
Q Consensus 155 ~~~v~~~f~~l~~ 167 (171)
+++..+.++.+..
T Consensus 163 ~~~~~~~L~~ll~ 175 (187)
T COG2229 163 GEGARDQLDVLLL 175 (187)
T ss_pred chhHHHHHHHHHh
Confidence 8888888777654
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=5.3e-19 Score=124.64 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=87.8
Q ss_pred EEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH------HHHHhhh--CCCEEEE
Q psy11510 43 LLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS------YWRNYFE--STDGLIW 95 (171)
Q Consensus 43 liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~~~ii~ 95 (171)
++|..|||||||++++.+ +..++..+.+|||||++.+.. ++..++. ++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 589999999999999988 223346789999999877654 3566664 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHH--------HHhhhccCCCHHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNV--------SEKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~--------~~~sa~~~~~v~~~f~~l~ 166 (171)
|+|++++.+.. .++..+.+ .++|+++|+||+|+.+... ..+...+ .+.|+.+|.|+.++|+.+.
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 99998865432 33334422 3789999999999976321 1112222 1569999999999999998
Q ss_pred HHH
Q psy11510 167 NEV 169 (171)
Q Consensus 167 ~~i 169 (171)
+..
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 753
No 161
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=9.4e-19 Score=134.57 Aligned_cols=124 Identities=18% Similarity=0.065 Sum_probs=88.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh-H-------HHHHhhhCCC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR-S-------YWRNYFESTD 91 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~-~-------~~~~~~~~~~ 91 (171)
+|+++|.+|||||||++++.+ ....+.++.+|||||..... . ....+++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999998 11233568999999964321 1 1335578999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHH---------HHhhhccCCCHHHH
Q psy11510 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNV---------SEKATKVKLNKQSK 161 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~---------~~~sa~~~~~v~~~ 161 (171)
++++|+|+++..+.+ +++...+.. .+.|+++|+||+|+.+... .+....+ ...||++|.|++++
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFL 155 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 999999999876664 222333332 4789999999999964211 1111111 25699999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
++.+.+.+
T Consensus 156 ~~~l~~~l 163 (270)
T TIGR00436 156 AAFIEVHL 163 (270)
T ss_pred HHHHHHhC
Confidence 99987653
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=4e-19 Score=124.83 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=91.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHhhhCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNYFEST 90 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~~ 90 (171)
++|+++|++|+|||||++++.+ ....+..+.+||+||...+... ...++.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999987 2223467899999997654321 22456789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH---HHHHHHhhhccCCCHHHHHHHHHH
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED---IKNVSEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+...... .....+.||+++.|++++++.+.+
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 154 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLE 154 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 99999999998777765543222 35799999999999976332210 112337799999999999999876
Q ss_pred H
Q psy11510 168 E 168 (171)
Q Consensus 168 ~ 168 (171)
.
T Consensus 155 ~ 155 (157)
T cd04164 155 L 155 (157)
T ss_pred h
Confidence 4
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=1.1e-18 Score=146.73 Aligned_cols=127 Identities=16% Similarity=0.236 Sum_probs=100.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCccc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~~~ 78 (171)
..+|+++|..++|||||++++.. + +...+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 45899999999999999999975 1 12247899999999999
Q ss_pred hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHH--------
Q psy11510 79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNV-------- 147 (171)
Q Consensus 79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~-------- 147 (171)
|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.+.... +++.+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~v 157 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEA 157 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceE
Confidence 9999999999999999999999977776665554433 2 46899999999999763322 223332
Q ss_pred HHhhhccCCCHHHHHHHHHHHH
Q psy11510 148 SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 148 ~~~sa~~~~~v~~~f~~l~~~i 169 (171)
...||++|.|++++|+.+++.+
T Consensus 158 i~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhC
Confidence 2469999999999999998754
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=8.7e-19 Score=142.67 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=106.2
Q ss_pred eeccceeeeccceecccc-------cccCCC-------CCceeEEEEEeCCCCcHHHHHHHHhc----------------
Q psy11510 11 DVGGQKSLRSYSYYGMGM-------LRHRPQ-------VSNVAVVSLLRNKNGGETLILKKKKM---------------- 60 (171)
Q Consensus 11 ~~~~~~~~~~~~~~~m~~-------~~~~~~-------~~~~~ki~liG~~~~GKttli~~~~~---------------- 60 (171)
.+|..+.+..+|.++.|. .+.+.. ....++|+++|.+|+|||||++++.+
T Consensus 131 ~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~ 210 (429)
T TIGR03594 131 SLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS 210 (429)
T ss_pred hcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc
Confidence 455556777777666665 111111 23468999999999999999999987
Q ss_pred ----cccCceEEEEEecCCccchhHH-----------HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe
Q psy11510 61 ----IMTFRFKLNIWDVGGQKSLRSY-----------WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125 (171)
Q Consensus 61 ----~~~~~~~~~i~d~~g~~~~~~~-----------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 125 (171)
....+..+.+|||||..++... ...+++.+|++++|+|++++.+..... ++..+. ..++|
T Consensus 211 ~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----~~~~~ 285 (429)
T TIGR03594 211 IDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLIL----EAGKA 285 (429)
T ss_pred EeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----HcCCc
Confidence 2233457899999997554322 123578999999999999887765542 233332 24799
Q ss_pred EEEEEeCCCCCC-CCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510 126 LLVFANKQDIEG-ALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 126 ~ivv~nK~Dl~~-~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i 169 (171)
+++|+||+|+.+ ....+++.+.+ ++||++|.|++++|+.+.+..
T Consensus 286 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 286 LVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred EEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999972 21222222221 459999999999999987653
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=1.4e-18 Score=125.82 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=94.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhHHHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRSYWR 84 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~~~~ 84 (171)
+|+++|..|+|||||++.+.. .......+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999977 011245789999999999988899
Q ss_pred HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH------------
Q psy11510 85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS------------ 148 (171)
Q Consensus 85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~------------ 148 (171)
.+++.+|++++|+|++++.+... .+++..+.. .+.|+++|+||+|+...... +++.+.+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654332 233333321 57999999999999752221 2222221
Q ss_pred ----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 ----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 ----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
+.||++|.|++++|+.+.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 459999999999999998764
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=3.4e-19 Score=145.58 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=96.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHhh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNYF 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~~ 87 (171)
+..++|+++|.+|+|||||++++.+ +...+.++.+|||+|.+.+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3568999999999999999999987 2234567899999998654332 22357
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH--HHHHHHhhhccCCCHHHHHHHH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED--IKNVSEKATKVKLNKQSKFQVL 165 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~sa~~~~~v~~~f~~l 165 (171)
+++|++++|+|++++.+++....|.. ..++|+++|+||+|+.+...... .....+.||++|.|++++++.+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~L 365 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREAI 365 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHHH
Confidence 88999999999999887775433322 35789999999999976322210 1123467999999999999999
Q ss_pred HHHH
Q psy11510 166 LNEV 169 (171)
Q Consensus 166 ~~~i 169 (171)
.+.+
T Consensus 366 ~~~l 369 (449)
T PRK05291 366 KELA 369 (449)
T ss_pred HHHH
Confidence 8764
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=2.1e-18 Score=139.84 Aligned_cols=130 Identities=21% Similarity=0.184 Sum_probs=92.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccCc-eEEEEEecCCccch--hHHHHHh------hhCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFR-FKLNIWDVGGQKSL--RSYWRNY------FEST 90 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~-~~~~i~d~~g~~~~--~~~~~~~------~~~~ 90 (171)
.+|+++|.+|||||||++++.+ +...+ ..+.+|||+|..+. ...+..| ++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 5899999999999999999987 11122 26789999997432 2233333 5789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH-HHHH-----HHHhhhccCCCHHHHHHH
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE-DIKN-----VSEKATKVKLNKQSKFQV 164 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~-----~~~~sa~~~~~v~~~f~~ 164 (171)
|++++|+|++++.+++.+..|.. ++......++|+++|+||+|+.+..... +... ....||++|.|++++++.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~ 356 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQA 356 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHH
Confidence 99999999999887777644322 2333333579999999999996531111 1110 135799999999999999
Q ss_pred HHHHH
Q psy11510 165 LLNEV 169 (171)
Q Consensus 165 l~~~i 169 (171)
+.+.+
T Consensus 357 I~~~l 361 (426)
T PRK11058 357 LTERL 361 (426)
T ss_pred HHHHh
Confidence 98765
No 168
>KOG0077|consensus
Probab=99.78 E-value=1.8e-18 Score=120.48 Aligned_cols=117 Identities=26% Similarity=0.485 Sum_probs=107.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
.++.-|++++|..|+|||||+..+.. +...++.+..+|.+|+..-+..|..|+..+|++++.+|
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd 96 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD 96 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence 56788999999999999999999998 55678899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhh
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKA 151 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~s 151 (171)
+.+.++|.+....+..++........|+++.+||+|.+.+.++++.+.....+
T Consensus 97 a~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~ 149 (193)
T KOG0077|consen 97 AYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLS 149 (193)
T ss_pred hhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHH
Confidence 99999999999999999888778899999999999999999988888777443
No 169
>KOG1673|consensus
Probab=99.78 E-value=1.1e-18 Score=120.43 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=110.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.-.+||-++|++..|||||+-++.+ +.+.++.+.+||.+|++++..+.+....++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 3469999999999999999999887 6677899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH---H----HHHH--------HhhhccCCCHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED---I----KNVS--------EKATKVKLNKQ 159 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~----~~~~--------~~sa~~~~~v~ 159 (171)
|+||++++++++.+.+|+.+...-. ..-+|+ +||+|.|+.-..+.+. + +.+. .+|+..+.||.
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~N-ktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLN-KTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccC-CccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999985432 234665 5699999865444432 1 2222 34888999999
Q ss_pred HHHHHHHHHHhC
Q psy11510 160 SKFQVLLNEVSN 171 (171)
Q Consensus 160 ~~f~~l~~~i~~ 171 (171)
.+|.-+...++|
T Consensus 176 KIFK~vlAklFn 187 (205)
T KOG1673|consen 176 KIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHhC
Confidence 999988877764
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=4.2e-18 Score=121.29 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=89.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh----------HH-HHHh
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR----------SY-WRNY 86 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~----------~~-~~~~ 86 (171)
.++|+++|.+|+|||||++++.+ ....+..+.+||+||..... .. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 57899999999999999999977 12234567899999964331 11 1234
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHH-------------Hhh
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTPEDIKNVS-------------EKA 151 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~s 151 (171)
+..+|++++|+|++++.+.... .++..+. ..+.|+++++||+|+.+. ...++..... .+|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999988765443 2223222 246899999999999764 2222222222 459
Q ss_pred hccCCCHHHHHHHHHHH
Q psy11510 152 TKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~~ 168 (171)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998763
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=5.9e-18 Score=119.51 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=88.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH--------HHHHhhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFE 88 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 88 (171)
...+|+++|++|+|||||++++.+ .......+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999987 122346688999999754332 2334577
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH----------HhhhccCCC
Q psy11510 89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS----------EKATKVKLN 157 (171)
Q Consensus 89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~----------~~sa~~~~~ 157 (171)
.+|++++|+|++++. .....++...+.. .+.|+++|+||+|+.. .....+..... ++|++++.+
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 899999999999872 2222222222222 2689999999999974 22222222222 458999999
Q ss_pred HHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNE 168 (171)
Q Consensus 158 v~~~f~~l~~~ 168 (171)
++++++.+.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 172
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=1.8e-18 Score=122.08 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=86.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccch------hHHHHHhh--hCCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSL------RSYWRNYF--ESTD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~------~~~~~~~~--~~~~ 91 (171)
++|+++|.+|||||||++++.+ +...+..+.+.|+||.-.. +.+...++ .++|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 5899999999999999999999 4445678999999994322 22344444 5899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHHHH
Q psy11510 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQSKF 162 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~~f 162 (171)
+++.|+|++..+ .-.....++++ .++|++++.||+|+.. .++.+.+.+.+ .+||.++.|+++++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 999999998743 32333445543 4799999999999865 35666777766 55999999999998
Q ss_pred HHH
Q psy11510 163 QVL 165 (171)
Q Consensus 163 ~~l 165 (171)
+.+
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 764
No 173
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=6.9e-18 Score=123.46 Aligned_cols=127 Identities=18% Similarity=0.112 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------------cc------------cCceEEEEEecCCccc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------------IM------------TFRFKLNIWDVGGQKS 78 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------------~~------------~~~~~~~i~d~~g~~~ 78 (171)
++|+++|..++|||||++++.. .. .....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 5899999999999999999973 11 2267889999999876
Q ss_pred hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHH-------
Q psy11510 79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNV------- 147 (171)
Q Consensus 79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~------- 147 (171)
+..........+|++++|+|+++..+......+. +... .+.|+++|+||+|+..... .+++.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5333334456789999999998854443322221 1111 3679999999999974221 1222211
Q ss_pred --------HHhhhccCCCHHHHHHHHHHHHh
Q psy11510 148 --------SEKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 148 --------~~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
..+||++|.|++++++.+.++|.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 14699999999999999988763
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=9.1e-18 Score=136.99 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=89.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHhhhCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNYFEST 90 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~ 90 (171)
.+|+++|.+|||||||++++.+ ....+..+.+|||||.+. +......++.++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999986 233357789999999876 233345667899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHHHH
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQSKF 162 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~~f 162 (171)
|++++|+|++++.+... .++...+.. .++|+++|+||+|+.+. .+...++ .+.||++|.|+.++|
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcCCCCCEEEEeeCCCCHHHHH
Confidence 99999999987544322 122233332 27899999999997651 1222222 256999999999999
Q ss_pred HHHHH
Q psy11510 163 QVLLN 167 (171)
Q Consensus 163 ~~l~~ 167 (171)
+.+++
T Consensus 155 ~~I~~ 159 (435)
T PRK00093 155 DAILE 159 (435)
T ss_pred HHHHh
Confidence 99876
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.76 E-value=1e-17 Score=123.79 Aligned_cols=124 Identities=14% Similarity=0.195 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------cccC---------------------------c----
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------IMTF---------------------------R---- 65 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~---------------------------~---- 65 (171)
++|.++|..|+|||||++.+.. .... .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999865 1100 1
Q ss_pred --eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q psy11510 66 --FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----RRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL 139 (171)
Q Consensus 66 --~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~ 139 (171)
..+.+||+||++.+...+...+..+|++++|+|++++ .+++.+ ..+ ... ...|+++|+||+|+.+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~-~~~--~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AAL-EIM--GLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHH-HHc--CCCcEEEEEEchhccCHH
Confidence 5789999999998887777778889999999999874 233322 222 111 235799999999997522
Q ss_pred CH----HHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 140 TP----EDIKNVS-----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 140 ~~----~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
.. +++.+.+ ..||++|+|++++|+.+.+.+
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 11 2233322 449999999999999998754
No 176
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.76 E-value=2.2e-17 Score=138.93 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=100.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~ 76 (171)
.+..+|+++|..++|||||+.+++. + ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3456899999999999999999974 1 223578999999999
Q ss_pred cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHH------
Q psy11510 77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNV------ 147 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~------ 147 (171)
.+|...+..+++.+|++++|+|+++....+....|.... ..++|+++|+||+|+.+.... +++.+.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999876555544443322 147899999999999764322 233332
Q ss_pred --HHhhhccCCCHHHHHHHHHHHH
Q psy11510 148 --SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 148 --~~~sa~~~~~v~~~f~~l~~~i 169 (171)
...||++|.|+.++++.+++.+
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhC
Confidence 2569999999999999998754
No 177
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=1.7e-17 Score=142.41 Aligned_cols=155 Identities=16% Similarity=0.208 Sum_probs=107.7
Q ss_pred eeeccceeeeccceecccc-------cccCCC---------CCceeEEEEEeCCCCcHHHHHHHHhc-------------
Q psy11510 10 WDVGGQKSLRSYSYYGMGM-------LRHRPQ---------VSNVAVVSLLRNKNGGETLILKKKKM------------- 60 (171)
Q Consensus 10 ~~~~~~~~~~~~~~~~m~~-------~~~~~~---------~~~~~ki~liG~~~~GKttli~~~~~------------- 60 (171)
|.+|..+.++.+|.++.|. +..... .....||+++|.+|||||||++++.+
T Consensus 406 ~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT 485 (712)
T PRK09518 406 WKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT 485 (712)
T ss_pred HHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC
Confidence 3455566777888777776 111111 13458999999999999999999988
Q ss_pred -------cccCceEEEEEecCCccc----------hhHH-HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510 61 -------IMTFRFKLNIWDVGGQKS----------LRSY-WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA 122 (171)
Q Consensus 61 -------~~~~~~~~~i~d~~g~~~----------~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 122 (171)
...++..+.+|||+|..+ +..+ ....++.+|++++|+|+++..+.+... ++..+.. .
T Consensus 486 ~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~ 560 (712)
T PRK09518 486 RDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----A 560 (712)
T ss_pred cCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----c
Confidence 123444678999999532 2222 123468899999999999988777654 3333422 4
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510 123 GATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 123 ~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i 169 (171)
++|+++|+||+|+.+....+.+.... .+||++|.|++++|+.+.+..
T Consensus 561 ~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 561 GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999997632222222221 459999999999999988764
No 178
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.9e-17 Score=132.72 Aligned_cols=131 Identities=21% Similarity=0.168 Sum_probs=93.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccc----hhHHHHHh---hhCCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKS----LRSYWRNY---FESTD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~----~~~~~~~~---~~~~~ 91 (171)
..|+++|.+|||||||++++.+ +... ...+.+||+||... ...+...| +++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 3899999999999999999997 1222 46789999999632 22233444 45699
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCC-HHHHHHHH-----HhhhccCCCHHHH
Q psy11510 92 GLIWVVDSADK---RRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALT-PEDIKNVS-----EKATKVKLNKQSK 161 (171)
Q Consensus 92 ~ii~v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~-----~~sa~~~~~v~~~ 161 (171)
++++|+|+++. ++++....|...+.... ...++|+++|+||+|+.+... .+++.+.+ .+||++++|++++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL 318 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDEL 318 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHH
Confidence 99999999864 56666666666664322 235799999999999854211 12222221 5699999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
++.+.+.+
T Consensus 319 ~~~L~~~l 326 (424)
T PRK12297 319 LYAVAELL 326 (424)
T ss_pred HHHHHHHH
Confidence 99998765
No 179
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=1.7e-17 Score=135.88 Aligned_cols=132 Identities=23% Similarity=0.148 Sum_probs=91.9
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccc----hhHHH---HHhhhCCC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKS----LRSYW---RNYFESTD 91 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~----~~~~~---~~~~~~~~ 91 (171)
..+|+|+|.+|||||||++++.+ +...+..+.+||+||... ...+. -.++++|+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 46899999999999999999986 334557899999999521 11222 22456799
Q ss_pred EEEEEEeCCCh----hhHHHHHHHHHHHHhcc----------ccCCCeEEEEEeCCCCCCCCCH-HHHHHH--------H
Q psy11510 92 GLIWVVDSADK----RRLEDCARELHELLQEE----------RLAGATLLVFANKQDIEGALTP-EDIKNV--------S 148 (171)
Q Consensus 92 ~ii~v~d~~~~----~s~~~~~~~~~~i~~~~----------~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~--------~ 148 (171)
++++|+|+++. +.++.+..+..++.... ...++|+++|+||+|+++.... +.+... .
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVF 318 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEE
Confidence 99999999752 34444444444443221 2357999999999999763221 122222 2
Q ss_pred HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 ~~sa~~~~~v~~~f~~l~~~i 169 (171)
..||++++|+++++..+.+.+
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 319 EVSAASREGLRELSFALAELV 339 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 559999999999999998764
No 180
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.75 E-value=5e-17 Score=118.60 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=96.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cc--cCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IM--TFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~--~~~~~~~i~d~~g~ 76 (171)
++..+|+++|+.++|||||+.++.. .. .....++++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 3678999999999999999999996 23 56778999999999
Q ss_pred cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC---CHHHHHHHH-----
Q psy11510 77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL---TPEDIKNVS----- 148 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~----- 148 (171)
..|.......+..+|++++|+|+.+...-. ..+.+..+. ..++|+++|.||+|+.... ..+++.+.+
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeecccceecccccceeeeecccccccc-ccccccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 999887778899999999999998754332 222223332 2478999999999998311 112222111
Q ss_pred ----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 ----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 ----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
..||.+|.|+.++++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 238999999999999987653
No 181
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.75 E-value=2.3e-17 Score=138.23 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=94.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+..+|+++|..++|||||++++.. +... ...+.+|||||++.|..++...+..+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34567899999999999999999986 1111 227899999999999999998899999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-----------------HHhhhcc
Q psy11510 95 WVVDSADK---RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-----------------SEKATKV 154 (171)
Q Consensus 95 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----------------~~~sa~~ 154 (171)
+|+|+++. ++.+.+ ... ...++|+++++||+|+++. +.+++... .++||++
T Consensus 164 LVVda~dgv~~qT~e~i----~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI----SHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EEEECCCCCCHhHHHHH----HHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 99998873 333322 221 2257999999999999763 22332222 2569999
Q ss_pred CCCHHHHHHHHHH
Q psy11510 155 KLNKQSKFQVLLN 167 (171)
Q Consensus 155 ~~~v~~~f~~l~~ 167 (171)
|+|++++|+.+..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999998864
No 182
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=3e-17 Score=127.47 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=89.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh--------HHHHHhhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR--------SYWRNYFE 88 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~ 88 (171)
+.-.|+++|.+|||||||++++.+ ...++..+.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 456799999999999999999987 12244788999999964432 12334567
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-CCHH-HHHHHH---------HhhhccCCC
Q psy11510 89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA-LTPE-DIKNVS---------EKATKVKLN 157 (171)
Q Consensus 89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~-~~~~~~---------~~sa~~~~~ 157 (171)
++|++++|+|+++.. .....++...+.. .+.|+++|+||+|+... .... .+..+. ..||+++.|
T Consensus 84 ~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 84 DVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred cCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 899999999998832 2222233333332 46899999999999732 1111 122221 459999999
Q ss_pred HHHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNEV 169 (171)
Q Consensus 158 v~~~f~~l~~~i 169 (171)
++++++.+.+.+
T Consensus 159 v~~L~~~L~~~l 170 (292)
T PRK00089 159 VDELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHHhC
Confidence 999999988754
No 183
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.74 E-value=2.1e-17 Score=119.02 Aligned_cols=113 Identities=29% Similarity=0.440 Sum_probs=82.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-----------------c-ccCceEEEEEecCCccchhHHHHH---hhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-----------------I-MTFRFKLNIWDVGGQKSLRSYWRN---YFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-----------------~-~~~~~~~~i~d~~g~~~~~~~~~~---~~~~~~~ii~ 95 (171)
+.-.|+++|+.|+|||+|..++.. . ......+.+.|+||+++.+..... +..++.+|||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 345799999999999999999998 1 124557889999999998874333 4788999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHHH
Q psy11510 96 VVDSAD-KRRLEDCARELHELLQEER--LAGATLLVFANKQDIEGALTPEDIKNVSE 149 (171)
Q Consensus 96 v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 149 (171)
|+|++. +..+.+..+++..++.... ...+|++|++||+|+..+.+...++..+|
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 999974 5567788888888776433 35799999999999999888877777763
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=4.3e-17 Score=132.76 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=90.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCc--------cchhHHHHHhhhCCC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQ--------KSLRSYWRNYFESTD 91 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~--------~~~~~~~~~~~~~~~ 91 (171)
+|+++|.+|||||||++++.+ ....+..+.+|||||. +.+......+++++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999987 2234567899999996 334445666788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHH-----HHHhhhccCCCHHHHHHHH
Q psy11510 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL-TPEDIKN-----VSEKATKVKLNKQSKFQVL 165 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~-----~~~~sa~~~~~v~~~f~~l 165 (171)
++++|+|+.+..+... ..+...++. .++|+++|+||+|+.... ...+... ....||++|.|+.++++.+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 9999999987544332 122233332 378999999999987522 2222111 1256999999999999998
Q ss_pred HHHH
Q psy11510 166 LNEV 169 (171)
Q Consensus 166 ~~~i 169 (171)
.+.+
T Consensus 156 ~~~l 159 (429)
T TIGR03594 156 LELL 159 (429)
T ss_pred HHhc
Confidence 7654
No 185
>KOG3883|consensus
Probab=99.73 E-value=1.3e-16 Score=110.05 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=104.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-----------------------cccCceEEEEEecCCccch-hHHHHHhhhCCCE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-----------------------IMTFRFKLNIWDVGGQKSL-RSYWRNYFESTDG 92 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-----------------------~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~ 92 (171)
+..||+++|..++|||++++++.. -.+..-.+.+|||.|...+ ..+...|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 788999999999999999999997 1223457899999997777 5567788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++||+..+++||+.+...-+.|-.......+|+++++||+|+.+ .++.+-...++ +..+.+.-..-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999998876666665555557899999999999966 45555555555 34666666777777
Q ss_pred HHHHHHH
Q psy11510 163 QVLLNEV 169 (171)
Q Consensus 163 ~~l~~~i 169 (171)
..++...
T Consensus 168 ~~l~~rl 174 (198)
T KOG3883|consen 168 TYLASRL 174 (198)
T ss_pred HHHHHhc
Confidence 7666543
No 186
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.73 E-value=1.4e-16 Score=120.02 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=89.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh-------HHHHHhhhCCCEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR-------SYWRNYFESTDGL 93 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~i 93 (171)
+|+++|.+|+|||||++++.+ +...+..+++||+||..... .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 789999999999999999998 12356778999999974332 1234568899999
Q ss_pred EEEEeCCChh-hHHHHHHHHH----------------------------------------HHHhccc------------
Q psy11510 94 IWVVDSADKR-RLEDCARELH----------------------------------------ELLQEER------------ 120 (171)
Q Consensus 94 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~i~~~~~------------ 120 (171)
++|+|++++. ..+.+.+.+. .++.+.+
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998755 3333322221 2222111
Q ss_pred ------------cCCCeEEEEEeCCCCCCCCCHHHHHHHH------HhhhccCCCHHHHHHHHHHHH
Q psy11510 121 ------------LAGATLLVFANKQDIEGALTPEDIKNVS------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 121 ------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~sa~~~~~v~~~f~~l~~~i 169 (171)
..-+|+++|+||+|+.. .++...+. +.||++|.|++++|+.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDLLARQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01369999999999854 33333322 569999999999999998753
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.73 E-value=2.8e-17 Score=140.01 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=95.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc--cCceEEEEEecCCccchhHHHHHhhhCCC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM--TFRFKLNIWDVGGQKSLRSYWRNYFESTD 91 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 91 (171)
..+..+|+++|..++|||||++++.. .. .....+.+|||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 34667999999999999999999986 01 13478899999999999999999999999
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH-----------------HHHhh
Q psy11510 92 GLIWVVDSADK---RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN-----------------VSEKA 151 (171)
Q Consensus 92 ~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-----------------~~~~s 151 (171)
++++|+|+++. ++++.+ ..+ ...++|+++++||+|+.+. +.+++.. ..+.|
T Consensus 321 iaILVVDA~dGv~~QT~E~I----~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI----NYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEEECcCCCChhhHHHH----HHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 99999999874 444333 222 1257999999999999763 2222221 12569
Q ss_pred hccCCCHHHHHHHHHH
Q psy11510 152 TKVKLNKQSKFQVLLN 167 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~ 167 (171)
|++|.|++++|+.++.
T Consensus 392 AktG~GIdeLle~I~~ 407 (742)
T CHL00189 392 ASQGTNIDKLLETILL 407 (742)
T ss_pred CCCCCCHHHHHHhhhh
Confidence 9999999999998865
No 188
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.73 E-value=7.6e-17 Score=117.85 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcc------------------ccCceEEEEEecCCc----------cchhHHHHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMI------------------MTFRFKLNIWDVGGQ----------KSLRSYWRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~------------------~~~~~~~~i~d~~g~----------~~~~~~~~~~ 86 (171)
.....+|+++|.+|+|||||++++.+- ......+.+||+||. +.+..+...+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 457799999999999999999999971 011246889999994 3444455556
Q ss_pred hhCC---CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH--------Hhh
Q psy11510 87 FEST---DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS--------EKA 151 (171)
Q Consensus 87 ~~~~---~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~--------~~s 151 (171)
++.+ +++++|+|++++.+... .++...+.. .+.|+++++||+|+...-.. +++.+.+ .+|
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 6544 67888899877544332 122222222 47899999999998652211 2232332 459
Q ss_pred hccCCCHHHHHHHHHHHH
Q psy11510 152 TKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~~i 169 (171)
|+++.|++++++.+.+.+
T Consensus 176 a~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 176 SLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999987653
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.8e-17 Score=132.76 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=92.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH----------H-HH
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS----------Y-WR 84 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~----------~-~~ 84 (171)
...++|+++|.+|+|||||++++.+ ....+..+.+|||||..+... . ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 3579999999999999999999986 223456789999999643221 1 12
Q ss_pred HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------Hhh
Q psy11510 85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKA 151 (171)
Q Consensus 85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~s 151 (171)
.+++.+|++++|+|++++.+..... ++..+.+ .++|+++|+||+|+.+....+++.+.+ .+|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 3577899999999999887765542 2233322 478999999999997422222222222 459
Q ss_pred hccCCCHHHHHHHHHHH
Q psy11510 152 TKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~~ 168 (171)
|++|.|+.++|+.+.+.
T Consensus 326 A~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEA 342 (435)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988754
No 190
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=5.5e-17 Score=139.24 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=95.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+...|+++|..++|||||++++.. +...+..+++|||||++.|..++...+..+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45678899999999999999999975 22235678999999999999999988999999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH-----------------HHHhhhccC
Q psy11510 96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN-----------------VSEKATKVK 155 (171)
Q Consensus 96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-----------------~~~~sa~~~ 155 (171)
|+|+++ +++.+.+ .. ....++|+++++||+|+.+. +.+.+.. ++..||++|
T Consensus 367 VVdAddGv~~qT~e~i----~~----a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 367 VVAADDGVMPQTIEAI----NH----AKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEECCCCCCHhHHHHH----HH----HHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 999987 3344332 11 12357999999999999763 2222221 124599999
Q ss_pred CCHHHHHHHHHH
Q psy11510 156 LNKQSKFQVLLN 167 (171)
Q Consensus 156 ~~v~~~f~~l~~ 167 (171)
.|++++|+.+..
T Consensus 438 ~GI~eLle~I~~ 449 (787)
T PRK05306 438 EGIDELLEAILL 449 (787)
T ss_pred CCchHHHHhhhh
Confidence 999999998864
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=5.7e-17 Score=139.23 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=92.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~ 86 (171)
.....+|+++|.+|||||||++++.+ ....+..+.+|||||.+. +......+
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34457899999999999999999986 122356789999999763 33344567
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCH
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNK 158 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v 158 (171)
++.+|++++|+|+++..+ .....+...+.. .++|+++|+||+|+..... ...++. .+||++|.|+
T Consensus 352 ~~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg~~~~~~iSA~~g~GI 424 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLGLGEPYPISAMHGRGV 424 (712)
T ss_pred HHhCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcCCCCeEEEECCCCCCc
Confidence 889999999999986422 222222333332 5799999999999865321 122222 4699999999
Q ss_pred HHHHHHHHHHH
Q psy11510 159 QSKFQVLLNEV 169 (171)
Q Consensus 159 ~~~f~~l~~~i 169 (171)
.++|+.+++.+
T Consensus 425 ~eLl~~i~~~l 435 (712)
T PRK09518 425 GDLLDEALDSL 435 (712)
T ss_pred hHHHHHHHHhc
Confidence 99999998764
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=5e-17 Score=113.53 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=89.7
Q ss_pred EEeCCCCcHHHHHHHHhc--------------------cccC-ceEEEEEecCCccchhH-------HHHHhhhCCCEEE
Q psy11510 43 LLRNKNGGETLILKKKKM--------------------IMTF-RFKLNIWDVGGQKSLRS-------YWRNYFESTDGLI 94 (171)
Q Consensus 43 liG~~~~GKttli~~~~~--------------------~~~~-~~~~~i~d~~g~~~~~~-------~~~~~~~~~~~ii 94 (171)
++|+.|+|||||++++.+ .... ...+.+||+||...+.. ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999997 1111 45789999999776543 3345778999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH---HH----------HhhhccCCCHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN---VS----------EKATKVKLNKQSK 161 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~----------~~sa~~~~~v~~~ 161 (171)
+|+|+++..+..... +.... ...+.|+++|+||+|+.......+..+ .. +.|++++.|+.++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999987765554 22222 235899999999999977544433321 11 4599999999999
Q ss_pred HHHHHHH
Q psy11510 162 FQVLLNE 168 (171)
Q Consensus 162 f~~l~~~ 168 (171)
++.+.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 193
>KOG4423|consensus
Probab=99.72 E-value=9.5e-19 Score=124.09 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=111.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
...+|++++|..|+|||+++++... -+...+.+++||+.||++|..+..-|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 4569999999999999999999987 334456789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhcccc---CCCeEEEEEeCCCCCCC-CC--HHHHHHHH---------HhhhccCCCH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERL---AGATLLVFANKQDIEGA-LT--PEDIKNVS---------EKATKVKLNK 158 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~Dl~~~-~~--~~~~~~~~---------~~sa~~~~~v 158 (171)
.+|||+++..+|+....|..++-...-. .-.|+++..||||.... .. ...+.++. ++|+|.+.|+
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 9999999999999999999887543322 34788999999999762 22 23344443 7899999999
Q ss_pred HHHHHHHHHHHh
Q psy11510 159 QSKFQVLLNEVS 170 (171)
Q Consensus 159 ~~~f~~l~~~i~ 170 (171)
.|+...++..++
T Consensus 183 ~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 183 PEAQRELVEKIL 194 (229)
T ss_pred hHHHHHHHHHHH
Confidence 999999887664
No 194
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.72 E-value=9.9e-17 Score=134.73 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=92.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+.|+++|..++|||||++++.+ +..++..+.+||+||+++|......++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 4689999999999999999984 122336789999999999988888888999999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC----HHHHHHHH------------HhhhccCC
Q psy11510 97 VDSAD---KRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT----PEDIKNVS------------EKATKVKL 156 (171)
Q Consensus 97 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~----~~~~~~~~------------~~sa~~~~ 156 (171)
+|+++ +++++.+. ++.. .++| +++|+||+|+.+... .+++.+.+ ++||++|.
T Consensus 81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99988 44554432 2222 3677 999999999976221 22233322 45999999
Q ss_pred CHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNE 168 (171)
Q Consensus 157 ~v~~~f~~l~~~ 168 (171)
|++++++.+.+.
T Consensus 153 GI~eL~~~L~~l 164 (581)
T TIGR00475 153 GIGELKKELKNL 164 (581)
T ss_pred CchhHHHHHHHH
Confidence 999999887654
No 195
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=7.4e-17 Score=116.77 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=79.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcc---------ccC---------ceEEEEEecCCcc----------chhHHHHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMI---------MTF---------RFKLNIWDVGGQK----------SLRSYWRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~---------~~~---------~~~~~i~d~~g~~----------~~~~~~~~~ 86 (171)
..+..+|+++|.+|+|||||++++.+. .+. +-.+.+||+||.. .+..+...+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 467899999999999999999999861 000 1146899999942 233344455
Q ss_pred hhC---CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH----------H
Q psy11510 87 FES---TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS----------E 149 (171)
Q Consensus 87 ~~~---~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~----------~ 149 (171)
++. +|++++|+|++++-+..... +...+.. .++|+++++||+|+..... .+++++.+ .
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 553 68999999998755444432 2233332 4789999999999965321 22233332 4
Q ss_pred hhhccCCCHH
Q psy11510 150 KATKVKLNKQ 159 (171)
Q Consensus 150 ~sa~~~~~v~ 159 (171)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 4888888763
No 196
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.70 E-value=2.6e-16 Score=123.53 Aligned_cols=110 Identities=21% Similarity=0.366 Sum_probs=86.4
Q ss_pred cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----------RRLEDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
+..++..+.+||++||...+..|..++.++++++||+|+++- +++.+....+..+++.....++|+++++
T Consensus 156 f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~ 235 (317)
T cd00066 156 FTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFL 235 (317)
T ss_pred EEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEc
Confidence 344678899999999999999999999999999999999873 6788888889999988877899999999
Q ss_pred eCCCCCC------------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 131 NKQDIEG------------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 131 nK~Dl~~------------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
||.|+.. +.+.+++.+++ .++|.+..+++.+|+.+.+.|+
T Consensus 236 NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 236 NKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred cChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 9999632 12334444443 2256666777778777666554
No 197
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=4.1e-16 Score=125.22 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=92.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccchh-------HHHHHhhhCCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKSLR-------SYWRNYFESTD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~~~-------~~~~~~~~~~~ 91 (171)
..|.++|.+|||||||++++.+ +... ...+.++|+||...-. ...-.++++++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 3799999999999999999997 2222 2458999999964311 11123477899
Q ss_pred EEEEEEeCC---ChhhHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCCCCH-HHHHHH----------HHhhhccCC
Q psy11510 92 GLIWVVDSA---DKRRLEDCARELHELLQE-ERLAGATLLVFANKQDIEGALTP-EDIKNV----------SEKATKVKL 156 (171)
Q Consensus 92 ~ii~v~d~~---~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~----------~~~sa~~~~ 156 (171)
++++|+|++ +.+.++....|+..+... ....+.|+++|+||+|+...... +.+..+ ...||+++.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~ 319 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGL 319 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCc
Confidence 999999988 455677776776666442 12247899999999999653211 112111 145999999
Q ss_pred CHHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNEV 169 (171)
Q Consensus 157 ~v~~~f~~l~~~i 169 (171)
|++++++.+.+.+
T Consensus 320 GIdeLl~~I~~~L 332 (390)
T PRK12298 320 GVKELCWDLMTFI 332 (390)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.70 E-value=2e-16 Score=132.58 Aligned_cols=115 Identities=22% Similarity=0.215 Sum_probs=88.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------c--cc-C----------c-----eEEEEEecCCccchhHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------I--MT-F----------R-----FKLNIWDVGGQKSLRSY 82 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------~--~~-~----------~-----~~~~i~d~~g~~~~~~~ 82 (171)
-|+++|..++|||||++++.+ . +. . . ..+.+|||||++.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 599999999999999999986 0 00 0 0 12789999999999999
Q ss_pred HHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhhhccCCCHH
Q psy11510 83 WRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQ 159 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~~v~ 159 (171)
+..+++.+|++++|+|+++ +++++.+. ++.. .++|+++++||+|+...........+.++|++++.++.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 9999999999999999987 45554432 2122 47899999999999764444455677888999887765
Q ss_pred HHH
Q psy11510 160 SKF 162 (171)
Q Consensus 160 ~~f 162 (171)
.-|
T Consensus 158 ~~~ 160 (590)
T TIGR00491 158 QNL 160 (590)
T ss_pred HHH
Confidence 544
No 199
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.69 E-value=1.9e-16 Score=109.68 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=83.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--cccC-----ceEEEEEecCCcc----chhHHHHHhhhCCCEEEEEEeCCChhhH-HH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--IMTF-----RFKLNIWDVGGQK----SLRSYWRNYFESTDGLIWVVDSADKRRL-ED 107 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--~~~~-----~~~~~i~d~~g~~----~~~~~~~~~~~~~~~ii~v~d~~~~~s~-~~ 107 (171)
||+++|+.|||||||++.+.+ .... .+.=.++||||.- .+....-....+||.+++|.|++++.+. ..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP 82 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP 82 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc
Confidence 799999999999999999999 1111 1222568999932 2222233345689999999999986542 21
Q ss_pred HHHHHHHHHhccccCCCeEEEEEeCCCCC-CCCCHHHHHHHH---------HhhhccCCCHHHHHHHH
Q psy11510 108 CARELHELLQEERLAGATLLVFANKQDIE-GALTPEDIKNVS---------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 108 ~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l 165 (171)
- +..+ -+.|+|-|.||+|+. +..+.+..++++ +.|+.+|+|++++.+.|
T Consensus 83 ~---fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 83 G---FASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred h---hhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 1 1122 368999999999998 344556666666 55999999999999876
No 200
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.69 E-value=4.1e-16 Score=123.42 Aligned_cols=76 Identities=22% Similarity=0.521 Sum_probs=68.2
Q ss_pred cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
+...+..+.+||++|+...+..|..++.++++++||+|+++ .+++.+....+..+++.....++|+++++
T Consensus 179 f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~ 258 (342)
T smart00275 179 FIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFL 258 (342)
T ss_pred EEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 45567788999999999999999999999999999999997 45788888899999988888899999999
Q ss_pred eCCCCC
Q psy11510 131 NKQDIE 136 (171)
Q Consensus 131 nK~Dl~ 136 (171)
||.|+.
T Consensus 259 NK~D~~ 264 (342)
T smart00275 259 NKIDLF 264 (342)
T ss_pred ecHHhH
Confidence 999984
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.69 E-value=6.3e-16 Score=129.92 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=97.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhHHH
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRSYW 83 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~~~ 83 (171)
-+|+++|..++|||||+.+++. +.+.+..+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 3799999999999999999985 34456789999999999999888
Q ss_pred HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHH------------
Q psy11510 84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNVS------------ 148 (171)
Q Consensus 84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~------------ 148 (171)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+.+.... +++.+.+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999998743 3444555555543 47899999999999763221 2222222
Q ss_pred ---HhhhccCC----------CHHHHHHHHHHHH
Q psy11510 149 ---EKATKVKL----------NKQSKFQVLLNEV 169 (171)
Q Consensus 149 ---~~sa~~~~----------~v~~~f~~l~~~i 169 (171)
..||++|. |+..+|+.+++.+
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 34788885 7999998887654
No 202
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=2.4e-16 Score=128.36 Aligned_cols=126 Identities=16% Similarity=0.077 Sum_probs=88.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||+.+++. +..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56789999999999999999999974 2223
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC---
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAR-ELHELLQEERLAGATLLVFANKQDIEGALT--- 140 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--- 140 (171)
+..+.+||+||+++|.......+..+|++++|+|+++.+++...+. +...+.... ...|+++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 5789999999999887655666789999999999998754321111 111222221 2358999999999975211
Q ss_pred ---HHHHHHHH-------------HhhhccCCCHHHHH
Q psy11510 141 ---PEDIKNVS-------------EKATKVKLNKQSKF 162 (171)
Q Consensus 141 ---~~~~~~~~-------------~~sa~~~~~v~~~f 162 (171)
.+++.+++ ++||++|.|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12233322 34999999998744
No 203
>COG1159 Era GTPase [General function prediction only]
Probab=99.68 E-value=7.7e-16 Score=117.15 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=91.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh--------HHHHHhh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR--------SYWRNYF 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~--------~~~~~~~ 87 (171)
.+.--|+++|.+|||||||+|++.+ ...++.++.+.||||-..-+ ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 3556799999999999999999999 45568889999999943211 1233446
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHH----------HhhhccCC
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNVS----------EKATKVKL 156 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~----------~~sa~~~~ 156 (171)
.++|+++||+|++.+..- -.+++.+.+.. .+.|++++.||+|...... ...+.+.. ..||++|.
T Consensus 84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 84 KDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred ccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 789999999999884332 22223333332 4689999999999877443 23333333 34999999
Q ss_pred CHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNE 168 (171)
Q Consensus 157 ~v~~~f~~l~~~ 168 (171)
|++.+.+.+...
T Consensus 159 n~~~L~~~i~~~ 170 (298)
T COG1159 159 NVDTLLEIIKEY 170 (298)
T ss_pred CHHHHHHHHHHh
Confidence 999999887653
No 204
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.67 E-value=8.1e-16 Score=132.40 Aligned_cols=124 Identities=20% Similarity=0.192 Sum_probs=90.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHH----------HHHhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSY----------WRNYF 87 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~----------~~~~~ 87 (171)
+.++|+++|++|||||||++++.+ ....+..+++||+||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 457899999999999999999998 3455678999999998766431 22333
Q ss_pred --hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH-----HhhhccCC
Q psy11510 88 --ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS-----EKATKVKL 156 (171)
Q Consensus 88 --~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~-----~~sa~~~~ 156 (171)
.++|++++|+|+++.++- ..+..++.+ .++|+++++||+|+.+... .+++.+.+ ..|+.+|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR 154 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence 379999999999885432 233444432 4799999999999975222 12222222 45999999
Q ss_pred CHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLN 167 (171)
Q Consensus 157 ~v~~~f~~l~~ 167 (171)
|++++.+.+.+
T Consensus 155 GIdeL~~~I~~ 165 (772)
T PRK09554 155 GIEALKLAIDR 165 (772)
T ss_pred CHHHHHHHHHH
Confidence 99999988765
No 205
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.67 E-value=7.4e-16 Score=118.24 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=75.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEecCCcc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
.+|+++|..|+|||||+++++. +...+..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999974 23446889999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT 140 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~ 140 (171)
+|.......++.+|++++|+|+++.... ....++... . ..++|+++++||+|+.....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCCCH
Confidence 9888777778999999999999875322 222323222 2 24789999999999977543
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.67 E-value=2.2e-15 Score=126.72 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=95.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS 81 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~ 81 (171)
+..+|+++|..++|||||+.+++. +...+..+++||+||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457899999999999999999985 234567899999999999999
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHH----------
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNVS---------- 148 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~---------- 148 (171)
.+..+++.+|++++|+|+++.... ....++..... .++|.++++||+|+.++... +++.+.+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 999999999999999999875332 22333343332 47899999999999764332 2233332
Q ss_pred -----HhhhccCC----------CHHHHHHHHHHH
Q psy11510 149 -----EKATKVKL----------NKQSKFQVLLNE 168 (171)
Q Consensus 149 -----~~sa~~~~----------~v~~~f~~l~~~ 168 (171)
..||.+|. ++..+++.+++.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 23888887 577888777654
No 207
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.67 E-value=1.1e-15 Score=115.43 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=76.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSY 82 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~ 82 (171)
+|+++|..|+|||||++++.. +...+.++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999975 2345678999999999999988
Q ss_pred HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+..+++.+|++++|+|+++.... ....++..+ .. .++|+++++||+|+..+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~-~~---~~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLL-RK---LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECccccCC
Confidence 89999999999999999886543 233334433 22 47899999999999753
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=8.6e-16 Score=128.99 Aligned_cols=125 Identities=21% Similarity=0.184 Sum_probs=93.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccC--------c-----e-----EEEEEecCCccch
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTF--------R-----F-----KLNIWDVGGQKSL 79 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~--------~-----~-----~~~i~d~~g~~~~ 79 (171)
+...|+++|..++|||||++++.+ .+.. . . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 344699999999999999999986 0000 0 0 1689999999999
Q ss_pred hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhhhccCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKL 156 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~ 156 (171)
..++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+........-..+.+++++++.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~-----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI-----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH-----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 9999888899999999999987 566655431 122 47899999999998643333333456788888888
Q ss_pred CHHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNEV 169 (171)
Q Consensus 157 ~v~~~f~~l~~~i 169 (171)
++.+.|+.....+
T Consensus 157 ~v~~~f~~~l~ev 169 (586)
T PRK04004 157 RVQQELEEKLYEL 169 (586)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887766554
No 209
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.67 E-value=1e-15 Score=122.32 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=115.1
Q ss_pred eeeeeccceeeeccceecccc-------cccC-CC----CC---ceeEEEEEeCCCCcHHHHHHHHhc------------
Q psy11510 8 NIWDVGGQKSLRSYSYYGMGM-------LRHR-PQ----VS---NVAVVSLLRNKNGGETLILKKKKM------------ 60 (171)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~m~~-------~~~~-~~----~~---~~~ki~liG~~~~GKttli~~~~~------------ 60 (171)
+-|.+|.+++++.+|.|+-|. +..+ .. .. ..+||+++|-+++|||||+|++++
T Consensus 133 efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGT 212 (444)
T COG1160 133 EFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGT 212 (444)
T ss_pred HHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCc
Confidence 358899999999999999888 3332 11 21 469999999999999999999999
Q ss_pred --------cccCceEEEEEecCCccchhHH-----------HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhcccc
Q psy11510 61 --------IMTFRFKLNIWDVGGQKSLRSY-----------WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERL 121 (171)
Q Consensus 61 --------~~~~~~~~~i~d~~g~~~~~~~-----------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~ 121 (171)
...++-++.+.||+|..+-... ....+..+|.+++|+|++.+-+-+.. . +..+.. .
T Consensus 213 TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~-ia~~i~---~ 287 (444)
T COG1160 213 TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-R-IAGLIE---E 287 (444)
T ss_pred cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-H-HHHHHH---H
Confidence 4556778899999995432222 22346789999999999998655443 2 222222 2
Q ss_pred CCCeEEEEEeCCCCCCC--CCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHH
Q psy11510 122 AGATLLVFANKQDIEGA--LTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 122 ~~~p~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~ 168 (171)
.+.++++|.||+|+.+. ...++.++.+ ..||++|.++.++|+.+.+.
T Consensus 288 ~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 288 AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 58999999999998764 3444443333 33999999999999988653
No 210
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.67 E-value=3.7e-16 Score=131.48 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=84.7
Q ss_pred eCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHH------HHHhhh--CCCEEEEEE
Q psy11510 45 RNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSY------WRNYFE--STDGLIWVV 97 (171)
Q Consensus 45 G~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~------~~~~~~--~~~~ii~v~ 97 (171)
|++|||||||++++.+ ...++..+++||+||+.++... ...++. ++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999997 2234556899999999876543 444443 799999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CC--HHHHHHH-----HHhhhccCCCHHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LT--PEDIKNV-----SEKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~--~~~~~~~-----~~~sa~~~~~v~~~f~~l~~~ 168 (171)
|+++.+. ...+..++.+ .++|+++|+||+|+.+. .. .+++.+. .++||++|.|++++++.+++.
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9987432 2233334422 47999999999998652 22 2222222 267999999999999999864
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=1.2e-15 Score=123.57 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=93.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--c---------------c-------------------c------------CceE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--I---------------M-------------------T------------FRFK 67 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--~---------------~-------------------~------------~~~~ 67 (171)
++.++|+++|..++|||||++.+.. . . . ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 5789999999999999999999975 0 0 0 1357
Q ss_pred EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHH
Q psy11510 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PED 143 (171)
Q Consensus 68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~ 143 (171)
+.+||+||+++|...+......+|++++|+|++++....+..+.+..+ ... ...|+++++||+|+.+... .++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 899999999999887777788899999999998643111222222222 211 2357899999999975211 233
Q ss_pred HHHHH-----------HhhhccCCCHHHHHHHHHHH
Q psy11510 144 IKNVS-----------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 144 ~~~~~-----------~~sa~~~~~v~~~f~~l~~~ 168 (171)
+.+++ ..||++|+|++++++.+...
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 33332 34999999999999998764
No 212
>KOG0096|consensus
Probab=99.67 E-value=7.8e-17 Score=114.65 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=111.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
...+|++++|..|.||||++++... .+.+.+.+..||+.|++.+.-....|+=...+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4589999999999999999999987 3445699999999999999999999998999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC------CHHHH--HHHHHhhhccCCCHHHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL------TPEDI--KNVSEKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~--~~~~~~sa~~~~~v~~~f~~l~ 166 (171)
++||++...++..+.+|.+++.... .++|++++|||.|..... +.... ..+.+.||+.+-|.+.-|-+++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHh
Confidence 9999999999999999999997653 579999999999987632 11111 1223679999999999999999
Q ss_pred HHH
Q psy11510 167 NEV 169 (171)
Q Consensus 167 ~~i 169 (171)
+.+
T Consensus 166 rKl 168 (216)
T KOG0096|consen 166 RKL 168 (216)
T ss_pred hhh
Confidence 865
No 213
>KOG1707|consensus
Probab=99.66 E-value=1.8e-15 Score=123.39 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=105.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
.++.++|+++|+.|||||||+-.+.. ...+.+...+.|++..+.-+.....-++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 46789999999999999999999998 44456778999998776655555666899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCC-CC---H---------HHHHHHHHhhhccCCCHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEGA-LT---P---------EDIKNVSEKATKVKLNKQS 160 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~~-~~---~---------~~~~~~~~~sa~~~~~v~~ 160 (171)
+|+.+++.+++.+...+..++.+.. ..++|+|+||||+|.... .. . .+++...++||++-.|+.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 9999999999998854444444432 257999999999999762 11 1 1233334889999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+|--.-+++
T Consensus 166 ~fYyaqKaV 174 (625)
T KOG1707|consen 166 LFYYAQKAV 174 (625)
T ss_pred hhhhhhhee
Confidence 998766554
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=3.7e-15 Score=119.09 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=89.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh---------HHHHHhhhC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR---------SYWRNYFES 89 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~~ 89 (171)
..|+++|-+|||||||+|++.+ ....+..+.+.||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999 23345568999999966322 123345678
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHH
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSK 161 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~ 161 (171)
||+++||+|....-+-.+ +.+.+++.. .++|+++|+||+|-.. ..+...++. ..||.+|.|+.++
T Consensus 84 ADvilfvVD~~~Git~~D--~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 84 ADVILFVVDGREGITPAD--EEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence 999999999877433221 223333332 4799999999999863 233344444 4499999999999
Q ss_pred HHHHHHH
Q psy11510 162 FQVLLNE 168 (171)
Q Consensus 162 f~~l~~~ 168 (171)
.+.+.+.
T Consensus 157 ld~v~~~ 163 (444)
T COG1160 157 LDAVLEL 163 (444)
T ss_pred HHHHHhh
Confidence 9998765
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.65 E-value=3.6e-15 Score=120.87 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=91.2
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------cc-----c---------------------C-----c
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM-----------------IM-----T---------------------F-----R 65 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~-----------------~~-----~---------------------~-----~ 65 (171)
..++.++|+++|..++|||||+..+.+ .. . + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 367899999999999999999999965 00 0 0 2
Q ss_pred eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-
Q psy11510 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT- 140 (171)
Q Consensus 66 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~- 140 (171)
..+++||+||+++|..........+|++++|+|++++ ++.+.+. .+ ... ...|+++|+||+|+.+...
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l-~~~--~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----AL-DII--GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HH-HHc--CCCcEEEEEEeeccccchhH
Confidence 4689999999988866544445678999999999864 3333222 11 211 2347899999999975321
Q ss_pred ---HHHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 141 ---PEDIKNVS-----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 141 ---~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
.+++..++ ..||++|.|++++++.+.+.+
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 12333332 359999999999999987643
No 216
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.64 E-value=2e-15 Score=123.02 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=86.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||+.+++. +..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46889999999999999999999983 2234
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT---- 140 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~---- 140 (171)
+..+.+|||||+++|.......+..+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 6789999999998886544445678999999999987312211111112222221 2247999999999975111
Q ss_pred --HHHHHHHH-------------HhhhccCCCHHHHH
Q psy11510 141 --PEDIKNVS-------------EKATKVKLNKQSKF 162 (171)
Q Consensus 141 --~~~~~~~~-------------~~sa~~~~~v~~~f 162 (171)
.+++.+.+ ..||++|.|+.+.+
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12333332 34999999998744
No 217
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.63 E-value=5.2e-15 Score=110.61 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=74.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------------------------cc--------cCceEEEEEecC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------------------------IM--------TFRFKLNIWDVG 74 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------------------------~~--------~~~~~~~i~d~~ 74 (171)
+|+++|..++|||||+.+++. .. +....+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974 11 226788999999
Q ss_pred CccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 75 GQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 75 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
|+..|......+++.+|++++|+|+++..+.+. ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999988999999999999999998765543 222333322 368999999999986
No 218
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.63 E-value=3.1e-15 Score=119.82 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=96.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~ 86 (171)
-+..+|++++|.+|||||||+|.+.+ +.-.++++.+.||+|.+..... ....
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 45789999999999999999999999 6667899999999996643332 2234
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH--H---HHHHhhhccCCCHHHH
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI--K---NVSEKATKVKLNKQSK 161 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~---~~~~~sa~~~~~v~~~ 161 (171)
++.||.+++|+|.+.+.+-.... .+. ....++|+++|.||.|+......... . .....|+++|+|++.+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-LIE-----LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-HHH-----hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHH
Confidence 67899999999999863222211 111 22367999999999999885443322 1 1246799999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
.+.+.+.+
T Consensus 368 ~~~i~~~~ 375 (454)
T COG0486 368 REAIKQLF 375 (454)
T ss_pred HHHHHHHH
Confidence 98887654
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.63 E-value=4.9e-15 Score=110.15 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=73.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------------------------c-----ccCceEEEEEecCCc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------------------------I-----MTFRFKLNIWDVGGQ 76 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------------------------~-----~~~~~~~~i~d~~g~ 76 (171)
+|+++|..|+|||||+.++.. . +.....+++||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999864 0 123578899999999
Q ss_pred cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
.+|......++..+|++++|+|+++..+... ..++..... .++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999988765533 333333322 358999999999985
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.63 E-value=7.5e-15 Score=103.84 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=81.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc------c------------ccCceEEEEEecCCcc----------chhHHHHHhhh---
Q psy11510 40 VVSLLRNKNGGETLILKKKKM------I------------MTFRFKLNIWDVGGQK----------SLRSYWRNYFE--- 88 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~------~------------~~~~~~~~i~d~~g~~----------~~~~~~~~~~~--- 88 (171)
.|+++|..|+|||||++.+.+ . ......+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 489999999999999999993 0 0011167789999943 24444455554
Q ss_pred CCCEEEEEEeCCChhhH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH----------Hhhh
Q psy11510 89 STDGLIWVVDSADKRRL--EDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS----------EKAT 152 (171)
Q Consensus 89 ~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~----------~~sa 152 (171)
+.+++++++|.+...+. ..+.+|+.. .+.|+++++||+|+...-.. ......+ .+|+
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 46788999998765322 223333332 25899999999999542111 1222111 5599
Q ss_pred ccCCCHHHHHHHHHHH
Q psy11510 153 KVKLNKQSKFQVLLNE 168 (171)
Q Consensus 153 ~~~~~v~~~f~~l~~~ 168 (171)
+++.+++++++.+.+.
T Consensus 154 ~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQGIDELRALIEKW 169 (170)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999764
No 221
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.62 E-value=5.4e-15 Score=109.60 Aligned_cols=117 Identities=17% Similarity=0.049 Sum_probs=79.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----c----------------------------------------------ccCceEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----I----------------------------------------------MTFRFKLN 69 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----~----------------------------------------------~~~~~~~~ 69 (171)
+|+++|..|+|||||+++++. + ...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975 1 12344789
Q ss_pred EEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC------HHH
Q psy11510 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT------PED 143 (171)
Q Consensus 70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~ 143 (171)
+|||||+++|.......++.+|++++|+|++++..-. ... ...+.... ...++++|+||+|+.+... .++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999888666666788999999999998753211 111 11222221 1245788999999975211 112
Q ss_pred HHHH-----------HHhhhccCCCHHH
Q psy11510 144 IKNV-----------SEKATKVKLNKQS 160 (171)
Q Consensus 144 ~~~~-----------~~~sa~~~~~v~~ 160 (171)
+.+. ...||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 2221 1458999988864
No 222
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.60 E-value=5.3e-15 Score=110.47 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=69.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccCceEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTFRFKLN 69 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~~~~~~ 69 (171)
+|+++|..++|||||+.+++. +...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999998853 223567899
Q ss_pred EEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+||+||+..|...+...++.+|++++|+|+++... | ....+.+. +... ...+|+++++||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEEEEcccccc
Confidence 99999998887766677788999999999988421 1 11122111 1121 12368999999999974
No 223
>KOG0090|consensus
Probab=99.60 E-value=1e-14 Score=105.94 Aligned_cols=113 Identities=26% Similarity=0.337 Sum_probs=88.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhh---CCCEEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE---STDGLIWV 96 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~ii~v 96 (171)
.+.-.|+++|+.+||||+|..++.. .....-..++.|.||+.+.+.....++. .+-+++||
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 3446899999999999999999997 1122334789999999999987777777 79999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 97 VDSAD-KRRLEDCARELHELLQEE--RLAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 97 ~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
+|+.. ........+++-+++-.. ....+|+++++||+|+.-+.+.+-+++.+
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~L 170 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQL 170 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHH
Confidence 99755 334566677777776554 34679999999999998877777776665
No 224
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.58 E-value=1.4e-14 Score=120.36 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=78.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV 73 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~ 73 (171)
..+..+|+++|..++|||||+++++. +...+..+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 34678999999999999999999963 2334678999999
Q ss_pred CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510 74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT 140 (171)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~ 140 (171)
||+.+|......+++.+|++++|+|+++...- ....++.. ....++|+++++||+|+.....
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~----~~~~~iPiiv~iNK~D~~~a~~ 148 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV----CRLRDTPIFTFINKLDRDGREP 148 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH----HHhcCCCEEEEEECCcccccCH
Confidence 99999988777788999999999999875322 12222322 2235899999999999977543
No 225
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.58 E-value=3.6e-14 Score=119.87 Aligned_cols=121 Identities=21% Similarity=0.149 Sum_probs=87.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
-|.++|..++|||||++++.+ . ..++..+.+||+||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 478999999999999999985 0 11245679999999999976666668899999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC----HHHHHHHH-----------HhhhccCCC
Q psy11510 97 VDSAD---KRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT----PEDIKNVS-----------EKATKVKLN 157 (171)
Q Consensus 97 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~----~~~~~~~~-----------~~sa~~~~~ 157 (171)
+|+++ +++.+.+ .++.. .++| +++|+||+|+.+... .+++.+.+ ..||++|.|
T Consensus 82 Vda~eg~~~qT~ehl-----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 82 VACDDGVMAQTREHL-----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EECCCCCcHHHHHHH-----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 99987 4444333 22222 2455 679999999965211 22333332 349999999
Q ss_pred HHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNE 168 (171)
Q Consensus 158 v~~~f~~l~~~ 168 (171)
++++++.+.+.
T Consensus 154 I~~L~~~L~~~ 164 (614)
T PRK10512 154 IDALREHLLQL 164 (614)
T ss_pred CHHHHHHHHHh
Confidence 99999988753
No 226
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.57 E-value=3.6e-14 Score=109.04 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=73.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSY 82 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~ 82 (171)
+|+++|..|+|||||+++++. +...+..++++||||..++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974 2335678899999999988888
Q ss_pred HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+...++.+|++++|+|+.+...-.. ...+..+ . ..++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~-~---~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQA-D---RYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCCC
Confidence 8899999999999999987532221 2222222 2 247899999999999763
No 227
>KOG0082|consensus
Probab=99.57 E-value=3e-14 Score=111.62 Aligned_cols=110 Identities=22% Similarity=0.389 Sum_probs=87.2
Q ss_pred cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
+..++..+.++|++||..-+..|...+.+++++|||+++++ .+.+.+....+..+.+.....+.++|++.
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 55677889999999999999999999999999999999876 45677778889999999888999999999
Q ss_pred eCCCCCC-----------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 131 NKQDIEG-----------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 131 nK~Dl~~-----------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
||.|+.. ....+++.++. .+.|.+..||+.+|..+.+.|.
T Consensus 270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii 344 (354)
T KOG0082|consen 270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII 344 (354)
T ss_pred ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence 9999843 12333444443 2356667788888887776654
No 228
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.57 E-value=3.4e-14 Score=118.14 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=79.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV 73 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~ 73 (171)
..+..+|+++|..++|||||+++++. ++..+..+++|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 45678999999999999999999853 3345678999999
Q ss_pred CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy11510 74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV 147 (171)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 147 (171)
||+.+|.......++.+|++++|+|+++... .....++. +.. ..++|+++++||+|+... +.+++.+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~---~~~~PiivviNKiD~~~~-~~~~ll~~ 155 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTR---LRDTPIFTFMNKLDRDIR-DPLELLDE 155 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHH---hcCCCEEEEEECccccCC-CHHHHHHH
Confidence 9999888766667899999999999987421 12223232 222 257899999999999753 33333333
No 229
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.56 E-value=3.3e-14 Score=109.26 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=73.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSY 82 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~ 82 (171)
+|+++|..|+|||||++++.. ....+..+++|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999864 1234567899999999888888
Q ss_pred HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+..+++.+|++++|+|+++........ .+..+ . ..++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~-~---~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEK-LWEFA-D---EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-H---HcCCCEEEEEECCccCCC
Confidence 888899999999999998865443222 22222 2 247899999999999874
No 230
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.56 E-value=3.5e-14 Score=106.46 Aligned_cols=96 Identities=24% Similarity=0.311 Sum_probs=69.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhH-----HHHHhhhCCCEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRS-----YWRNYFESTDGL 93 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~~i 93 (171)
||+++|+.++||||+.+-+.. + ....+.+++||.||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999987 2 24567899999999976644 356678999999
Q ss_pred EEEEeCCChhhHH---HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 94 IWVVDSADKRRLE---DCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 94 i~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
|||+|+.+.+..+ .+...+..+.+ ..+++.+.++.+|.|+..
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~--~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQ--YSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHH--HSTT-EEEEEEE-CCCS-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHH--hCCCCeEEEEEeecccCC
Confidence 9999998544333 33333444433 347999999999999865
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=5.4e-14 Score=108.24 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=93.4
Q ss_pred cccCCC-CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH-------
Q psy11510 29 LRHRPQ-VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS------- 81 (171)
Q Consensus 29 ~~~~~~-~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~------- 81 (171)
+++++. ......|++.|.+|||||||++.+.. +..+...+++.||||.-+-..
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence 666777 55788999999999999999999999 556677899999999422110
Q ss_pred -HHHHhhh-CCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------
Q psy11510 82 -YWRNYFE-STDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------- 148 (171)
Q Consensus 82 -~~~~~~~-~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------- 148 (171)
..-..++ -.++|+|++|.+..+ +.+.-...+.++... -+.|+++|.||.|..+.-..+++....
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~ 314 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPL 314 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhcccccc
Confidence 1111223 378999999998854 567777777887443 248999999999998644444444443
Q ss_pred HhhhccCCCHHHHHHHHH
Q psy11510 149 EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 149 ~~sa~~~~~v~~~f~~l~ 166 (171)
..++..+.+++..-..+.
T Consensus 315 ~~~~~~~~~~d~~~~~v~ 332 (346)
T COG1084 315 KISATKGCGLDKLREEVR 332 (346)
T ss_pred ceeeeehhhHHHHHHHHH
Confidence 224555556555544443
No 232
>COG2262 HflX GTPases [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=109.16 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCC---------ccchhHHH
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGG---------QKSLRSYW 83 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g---------~~~~~~~~ 83 (171)
+.......|.++|..|+|||||+|.+.+ +. .++-.+.+-||.| .+.|++..
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH
Confidence 3355678999999999999999999998 11 2245577889998 12233333
Q ss_pred HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHH----HHhhhccCCCH
Q psy11510 84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNV----SEKATKVKLNK 158 (171)
Q Consensus 84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~----~~~sa~~~~~v 158 (171)
+. ...+|.++.|+|++++...+.+.. ...++.+....++|+++|.||+|+..... ...+... ...||++|+|+
T Consensus 267 EE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl 344 (411)
T COG2262 267 EE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGL 344 (411)
T ss_pred HH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCH
Confidence 33 347999999999999966655544 45666666667899999999999765222 2222222 24599999999
Q ss_pred HHHHHHHHHHH
Q psy11510 159 QSKFQVLLNEV 169 (171)
Q Consensus 159 ~~~f~~l~~~i 169 (171)
+.+.+.|...+
T Consensus 345 ~~L~~~i~~~l 355 (411)
T COG2262 345 DLLRERIIELL 355 (411)
T ss_pred HHHHHHHHHHh
Confidence 99999887754
No 233
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=2.4e-13 Score=101.85 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=84.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----------------------------------cc----------------------
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----------------------------------IM---------------------- 62 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----------------------------------~~---------------------- 62 (171)
||+++|+.++|||||+.++.. ++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999985 11
Q ss_pred cCceEEEEEecCCccchhHHHHHhhh--CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510 63 TFRFKLNIWDVGGQKSLRSYWRNYFE--STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT 140 (171)
Q Consensus 63 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~ 140 (171)
..+..+.+.|+||+++|.......+. .+|++++|+|+....+ ....+++..+ .. .++|+++|.||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 11356899999999988654333343 6899999999876533 1222222322 22 4689999999999854211
Q ss_pred ----HHHHHHHH----------------------------------HhhhccCCCHHHHHHHHHH
Q psy11510 141 ----PEDIKNVS----------------------------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 141 ----~~~~~~~~----------------------------------~~sa~~~~~v~~~f~~l~~ 167 (171)
.+++.+.+ .+|+.+|+|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 12222222 2399999999999877643
No 234
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.54 E-value=2e-13 Score=100.28 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=70.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS 81 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~ 81 (171)
+.++|+++|..++|||||+.+++. ...++..+.+.||||...|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 368999999999999999999964 223456789999999988876
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
.....+..+|++++|+|+..... ....+.+..+ .. .++| ++++.||+|+..
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCC
Confidence 66666788999999999987432 1122222333 22 3566 778999999853
No 235
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.54 E-value=1.3e-13 Score=92.84 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=60.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccch---------hHHHHHhhhCC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSL---------RSYWRNYFEST 90 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~~ 90 (171)
+|+++|.+|+|||||++.+.+ ....+..+.++|+||-..- .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999998 1234566789999995321 11122234789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANK 132 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 132 (171)
|++++|+|++++.. +...+.+..+ . .+.|+++|.||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 99999999877322 2222223333 2 68999999998
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.52 E-value=1.8e-13 Score=117.52 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=80.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|+++|..++|||||++++.. +...+..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34678999999999999999999963 22346789999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+|...+..+++.+|++++|+|+++.........| ..+ . ..++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~-~---~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQA-D---RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHH-H---hcCCCEEEEEECCCCCCC
Confidence 9988899999999999999999987666543332 333 2 247899999999999874
No 237
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.9e-13 Score=113.92 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=94.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh--C
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE--S 89 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~ 89 (171)
+..+|+++|++|||||||+|++.+ ....+-.+++.|.||.-+.. .....|+. +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 456799999999999999999999 44455568999999943332 23444443 5
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHH
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQS 160 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~ 160 (171)
+|+++-|+|+++.++= ...-.++++ -+.|++++.|+.|..+ .++.+.+.+.+ .++|++|.|+++
T Consensus 82 ~D~ivnVvDAtnLeRn---LyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 82 PDLIVNVVDATNLERN---LYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCEEEEEcccchHHHH---HHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 8999999999986432 222334443 3889999999999976 57788887777 779999999999
Q ss_pred HHHHHHH
Q psy11510 161 KFQVLLN 167 (171)
Q Consensus 161 ~f~~l~~ 167 (171)
+.+.+.+
T Consensus 155 l~~~i~~ 161 (653)
T COG0370 155 LKRAIIE 161 (653)
T ss_pred HHHHHHH
Confidence 9998875
No 238
>KOG0462|consensus
Probab=99.51 E-value=2.5e-13 Score=110.41 Aligned_cols=129 Identities=21% Similarity=0.296 Sum_probs=104.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+.-++.+|-.-..|||||..+++. .++..+.++++||||+-
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 35678899999999999999999998 22345899999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------- 148 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------- 148 (171)
+|...-...+.-|+++++|+|++....-+...+++..+ ..+..+|.|+||+|++.+ +.++....+
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-----e~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-----EAGLAIIPVLNKIDLPSA-DPERVENQLFELFDIPPA 210 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-----HcCCeEEEeeeccCCCCC-CHHHHHHHHHHHhcCCcc
Confidence 99887677778899999999999977666666666666 247899999999999884 333333333
Q ss_pred ---HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 ---EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 ---~~sa~~~~~v~~~f~~l~~~i 169 (171)
..||++|.|++++++.+++.|
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhC
Confidence 349999999999999998865
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.50 E-value=7e-13 Score=97.51 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=61.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhcc----------c-----cC--------ceEEEEEecCCccchhHHHHHh-----hhC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKMI----------M-----TF--------RFKLNIWDVGGQKSLRSYWRNY-----FES 89 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~~----------~-----~~--------~~~~~i~d~~g~~~~~~~~~~~-----~~~ 89 (171)
++||+++|.+|+|||||++.+.+. . .. ...+.+||+||..........| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 478999999999999999999870 0 00 1257899999975432222222 567
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
+|++++|.+. +|......+...+.. .+.|+++|+||+|+.
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccch
Confidence 8998887542 233333333333333 268999999999984
No 240
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.2e-13 Score=110.72 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=95.1
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------------ccc---CceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------------IMT---FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
.-=|.++|.-..|||||+-.+.. +.. +.-.+.|.||||++.|..|...-.+-+|.+++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 34588999999999999999998 222 23468899999999999998888888999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------------HhhhccCC
Q psy11510 96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------------EKATKVKL 156 (171)
Q Consensus 96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------------~~sa~~~~ 156 (171)
|+++++ |++.+.+ ++....++|+++..||+|.++..+.....+.. ..||++|+
T Consensus 85 VVa~dDGv~pQTiEAI--------~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 85 VVAADDGVMPQTIEAI--------NHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEccCCcchhHHHHH--------HHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999988 5555544 22334699999999999999744433332322 44999999
Q ss_pred CHHHHHHHHH
Q psy11510 157 NKQSKFQVLL 166 (171)
Q Consensus 157 ~v~~~f~~l~ 166 (171)
|+.++++.++
T Consensus 157 Gi~eLL~~il 166 (509)
T COG0532 157 GIDELLELIL 166 (509)
T ss_pred CHHHHHHHHH
Confidence 9999998876
No 241
>PRK12735 elongation factor Tu; Reviewed
Probab=99.48 E-value=1.2e-12 Score=105.80 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=72.7
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccc
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~ 78 (171)
..++.++|+++|..++|||||++++++ ...++..+.++||||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 367899999999999999999999973 123455789999999988
Q ss_pred hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCC
Q psy11510 79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDIEG 137 (171)
Q Consensus 79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl~~ 137 (171)
|..........+|++++|+|+.+... ....+.+..+ . ..++|.+ ++.||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~---~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-H---HcCCCeEEEEEEecCCcc
Confidence 86655566778999999999987432 2222323322 2 2367865 5799999964
No 242
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=5.1e-13 Score=107.16 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=102.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------cccCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------------------------IMTFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------------------------~~~~~~~~~i~d~~g~ 76 (171)
++.-+..++-.-..|||||..|++. -++..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 4456788899999999999999998 3446789999999999
Q ss_pred cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------
Q psy11510 77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------- 148 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------- 148 (171)
-+|.-.-..-+..|.+.++|+|++..-.-+.+.+.+..+ ..+.-++-|+||+||+.+.+ +.+....
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-----e~~LeIiPViNKIDLP~Adp-ervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPAADP-ERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-----HcCcEEEEeeecccCCCCCH-HHHHHHHHHHhCCCc
Confidence 888665555577899999999999987777777767777 25789999999999988433 3333333
Q ss_pred ----HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 ----EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 ----~~sa~~~~~v~~~f~~l~~~i 169 (171)
..|||+|.||+++++.+++.|
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhC
Confidence 449999999999999998764
No 243
>PRK12736 elongation factor Tu; Reviewed
Probab=99.47 E-value=1.5e-12 Score=105.23 Aligned_cols=98 Identities=18% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.++.++|+++|..++|||||+.++.+ ...++..+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 67899999999999999999999864 1223557899999999888
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
..........+|++++|+|++.... ....+.+..+ .. .++| +++++||+|+.+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcc
Confidence 6655555678999999999987421 1112222222 22 3677 678899999864
No 244
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.46 E-value=5.8e-13 Score=114.33 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|+++|..++|||||++++.. +...+..+++|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 44567999999999999999999964 22346789999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
++...+...++.+|++++|+|+++....+.. ..+..+ . ..++|+++++||+|+..+
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~---~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-N---RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-H---HcCCCEEEEEECCCCCCC
Confidence 9888888889999999999999886554332 222333 2 246899999999999863
No 245
>KOG1423|consensus
Probab=99.45 E-value=6.7e-13 Score=101.39 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=87.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc------chhHHH-----
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK------SLRSYW----- 83 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~------~~~~~~----- 83 (171)
..+.++|++||++|+|||||.|++.+ +..+..++.++||||.- ++..+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 46789999999999999999999999 66778999999999932 222111
Q ss_pred -HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------------CC--HHHHH
Q psy11510 84 -RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------------LT--PEDIK 145 (171)
Q Consensus 84 -~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------------~~--~~~~~ 145 (171)
.....+||.++.|+|+++....-.. ..+..+ .. ..++|-++|.||.|.... ++ .-++.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l-~~--ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHP-RVLHML-EE--YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccCh-HHHHHH-HH--HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1225679999999999963222111 112222 11 257899999999997431 11 11111
Q ss_pred HHH----------------------HhhhccCCCHHHHHHHHHHH
Q psy11510 146 NVS----------------------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 146 ~~~----------------------~~sa~~~~~v~~~f~~l~~~ 168 (171)
+.. -.||++|+|++++-+.+..+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence 111 12899999999999988754
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.44 E-value=1.6e-12 Score=106.41 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=86.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.+++++|+++|..++|||||+.+++. +...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 56889999999999999999988864 2234
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHH-------HHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLE-------DCARELHELLQEERLAGAT-LLVFANKQDIE 136 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~ 136 (171)
+..+++.|+||+++|.......+..+|+.++|+|+++. .|+ ...+.+... . ..++| +++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCC
Confidence 56889999999999988888888999999999999873 222 222222222 1 13664 68889999986
Q ss_pred C-CCC-------HHHHHHHH-------------HhhhccCCCHHH
Q psy11510 137 G-ALT-------PEDIKNVS-------------EKATKVKLNKQS 160 (171)
Q Consensus 137 ~-~~~-------~~~~~~~~-------------~~sa~~~~~v~~ 160 (171)
+ ..+ .+++..++ ..||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 3 122 22333333 238999999853
No 247
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.44 E-value=1.5e-12 Score=88.00 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=83.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhccccC-ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy11510 39 AVVSLLRNKNGGETLILKKKKMIMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQ 117 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~ 117 (171)
+|++++|..|+|||+|+.++...... ... + -+.| +..+...+.+.+++++.|++.++..+++.. |...+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~-~t~~---~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~ 72 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V-FTIG---IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLV 72 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCc--e-ehhh---hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHh
Confidence 58999999999999999999762221 111 0 1122 444456677889999999999999998765 6665544
Q ss_pred ccccCCCeEEEEEeCCCCCC--CCCHHHHHHHHHhhhccCCCHH
Q psy11510 118 EERLAGATLLVFANKQDIEG--ALTPEDIKNVSEKATKVKLNKQ 159 (171)
Q Consensus 118 ~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~sa~~~~~v~ 159 (171)
.. ..+.|.++++||.|+.+ ....++...+.+.|+++|.|+.
T Consensus 73 ~~-k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 73 GN-KSDLPILVGGNRDVLEEERQVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred cC-CCCCcEEEEeechhhHhhCcCCHHHHHHHHHHhCCCcchhh
Confidence 32 35789999999999854 4566667788899999999985
No 248
>PRK13768 GTPase; Provisional
Probab=99.43 E-value=1.5e-12 Score=99.29 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=63.9
Q ss_pred EEEEEecCCccch---hHHHHHhhhC-----CCEEEEEEeCCChhhHHHHH--HHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 67 KLNIWDVGGQKSL---RSYWRNYFES-----TDGLIWVVDSADKRRLEDCA--RELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 67 ~~~i~d~~g~~~~---~~~~~~~~~~-----~~~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
.+.+||+||+... +..++.+.+. ++++++|+|++...+-.... .|+...... ..++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence 5789999997653 3444444433 89999999996644332221 222211111 2479999999999987
Q ss_pred CCCCHHHHHHH--------------------------------------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 137 GALTPEDIKNV--------------------------------------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 137 ~~~~~~~~~~~--------------------------------------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
.....++..+. ...|+++++|++++.+.+.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 63222221110 1348889999999999987654
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.43 E-value=3.6e-12 Score=104.31 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=72.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||+.+++. +...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 56889999999999999999998865 2333
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGAT-LLVFANKQDIE 136 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~ 136 (171)
+..+++.|+||+++|..........+|++++|+|++.... | ....+.+..+ . ..++| ++++.||+|.+
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~---~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-F---TLGVKQMIVCINKMDDK 158 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-H---HcCCCeEEEEEEccccc
Confidence 5688999999999997777777889999999999987521 1 1222222222 2 13666 67899999964
No 250
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.42 E-value=1.9e-12 Score=106.75 Aligned_cols=124 Identities=15% Similarity=0.042 Sum_probs=82.2
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------c
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------I 61 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------~ 61 (171)
..++.++|+++|..++|||||+.+++. .
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 357789999999999999999999986 1
Q ss_pred ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-
Q psy11510 62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT- 140 (171)
Q Consensus 62 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~- 140 (171)
..++..+.++||||+++|..........+|++++|+|+.....-.. .+. ..+.... .-.|+++++||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~-~~l~~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRH-SFIATLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHH-HHHHHHh--CCCceEEEEEeeccccchhH
Confidence 1223578899999998886544444689999999999976431111 111 1111111 1247899999999974211
Q ss_pred -HHH----HHHHH------------HhhhccCCCHHHH
Q psy11510 141 -PED----IKNVS------------EKATKVKLNKQSK 161 (171)
Q Consensus 141 -~~~----~~~~~------------~~sa~~~~~v~~~ 161 (171)
.++ +..++ ..||++|.|+.+.
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 112 21211 2389999998764
No 251
>KOG1145|consensus
Probab=99.42 E-value=2.1e-12 Score=105.21 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=98.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
+.--|-++|.-..|||||+..|.+ .+ .+-.+.|.||||+..|..|...-..-+|.+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 445678899999999999999998 33 45778999999999999999888888999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------------HhhhccCC
Q psy11510 96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------------EKATKVKL 156 (171)
Q Consensus 96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------------~~sa~~~~ 156 (171)
|+.+.| +++.+.+ ++....++|+++.+||+|.+++.+..-.++++ ..||++|+
T Consensus 231 VVAadDGVmpQT~EaI--------khAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 231 VVAADDGVMPQTLEAI--------KHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEccCCccHhHHHHH--------HHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 999888 4455444 34445799999999999999865554455554 33999999
Q ss_pred CHHHHHHHHH
Q psy11510 157 NKQSKFQVLL 166 (171)
Q Consensus 157 ~v~~~f~~l~ 166 (171)
|++.+-+.+.
T Consensus 303 nl~~L~eail 312 (683)
T KOG1145|consen 303 NLDLLEEAIL 312 (683)
T ss_pred ChHHHHHHHH
Confidence 9999887765
No 252
>KOG1489|consensus
Probab=99.41 E-value=1.5e-12 Score=99.91 Aligned_cols=130 Identities=22% Similarity=0.226 Sum_probs=93.3
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccc----hhHHHHHh---hhCC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKS----LRSYWRNY---FEST 90 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~----~~~~~~~~---~~~~ 90 (171)
.-.+-+||-+|+|||||++.+.. +.++ ...+.+=|.||.-. .+-+-..| ++.|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 34677999999999999999998 2333 34488889999422 22233333 5679
Q ss_pred CEEEEEEeCCCh---hhHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCC-CCH-HHHHHHH------HhhhccCCCH
Q psy11510 91 DGLIWVVDSADK---RRLEDCARELHELLQ-EERLAGATLLVFANKQDIEGA-LTP-EDIKNVS------EKATKVKLNK 158 (171)
Q Consensus 91 ~~ii~v~d~~~~---~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~------~~sa~~~~~v 158 (171)
+.++||+|.+.+ +.++.++....++-. +....+.|.++|+||+|+++. .+. +++.+.+ ..||++++++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGL 355 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccch
Confidence 999999999998 777777665555522 344578999999999999752 221 3444444 4599999999
Q ss_pred HHHHHHHHH
Q psy11510 159 QSKFQVLLN 167 (171)
Q Consensus 159 ~~~f~~l~~ 167 (171)
.++...+-+
T Consensus 356 ~~ll~~lr~ 364 (366)
T KOG1489|consen 356 EELLNGLRE 364 (366)
T ss_pred HHHHHHHhh
Confidence 999887643
No 253
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=1.1e-11 Score=89.96 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=86.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccC--ceEEEEEecCC----------ccchhHHHHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTF--RFKLNIWDVGG----------QKSLRSYWRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~--~~~~~i~d~~g----------~~~~~~~~~~~ 86 (171)
.....-|+++|-+|||||||++.+.+ ++.- .-.+.+.|.|| ++....+...|
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 44677999999999999999999999 1111 11267889999 33444455556
Q ss_pred hh---CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH-----------
Q psy11510 87 FE---STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS----------- 148 (171)
Q Consensus 87 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~----------- 148 (171)
++ +-.++++++|+..+..- ....+-+.+.+ .++|+++++||+|....... ..+.+.+
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~ 175 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKD--LDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVV 175 (200)
T ss_pred HhhchhheEEEEEEECCCCCcH--HHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEE
Confidence 65 35778888998775433 22223333333 48999999999998763222 2333322
Q ss_pred HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 ~~sa~~~~~v~~~f~~l~~~i 169 (171)
..|+.++.|++++-..|.+.+
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEecccccCHHHHHHHHHHHh
Confidence 237788889999888887654
No 254
>KOG1532|consensus
Probab=99.39 E-value=9.2e-12 Score=94.03 Aligned_cols=131 Identities=13% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
.+++.-|+++|..|+|||||++|+..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 56788999999999999999999987
Q ss_pred -------------c--ccCceEEEEEecCCccc-h------hHHHHHhh-hCCCEEEEEEeC---CChhhHHHHHHHHHH
Q psy11510 61 -------------I--MTFRFKLNIWDVGGQKS-L------RSYWRNYF-ESTDGLIWVVDS---ADKRRLEDCARELHE 114 (171)
Q Consensus 61 -------------~--~~~~~~~~i~d~~g~~~-~------~~~~~~~~-~~~~~ii~v~d~---~~~~s~~~~~~~~~~ 114 (171)
+ ........+.|||||-. | .-+...+. ....++++|+|. +++.+|-.-.-+-..
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 1 12335567888888632 1 11223322 246788899985 457778666666677
Q ss_pred HHhccccCCCeEEEEEeCCCCCCC-CCHHHH------HHHH-----------------------------HhhhccCCCH
Q psy11510 115 LLQEERLAGATLLVFANKQDIEGA-LTPEDI------KNVS-----------------------------EKATKVKLNK 158 (171)
Q Consensus 115 i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~------~~~~-----------------------------~~sa~~~~~v 158 (171)
++.. .+.|.|++.||+|+.++ .-.+.+ ++++ ..|+.+|.|.
T Consensus 176 ilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 176 ILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 7765 57999999999999763 111111 1111 2289999999
Q ss_pred HHHHHHHHHH
Q psy11510 159 QSKFQVLLNE 168 (171)
Q Consensus 159 ~~~f~~l~~~ 168 (171)
++.|..+-+.
T Consensus 253 ddf~~av~~~ 262 (366)
T KOG1532|consen 253 DDFFTAVDES 262 (366)
T ss_pred HHHHHHHHHH
Confidence 9999877543
No 255
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.39 E-value=2.7e-12 Score=104.08 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=79.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------cccCce
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------------------------------------IMTFRF 66 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------------------------------------~~~~~~ 66 (171)
++|+++|..++|||||+.+++. +..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999975 112345
Q ss_pred EEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC------
Q psy11510 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT------ 140 (171)
Q Consensus 67 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~------ 140 (171)
.+.++|+||+++|.......+..+|++++|+|+.....-+ ..+.+ .+.... ...++++++||+|+.+...
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHS-YIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHH-HHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 7899999999988665555678999999999987653211 11111 121221 1346889999999975211
Q ss_pred HHHHHHHH-----------HhhhccCCCHHH
Q psy11510 141 PEDIKNVS-----------EKATKVKLNKQS 160 (171)
Q Consensus 141 ~~~~~~~~-----------~~sa~~~~~v~~ 160 (171)
.+++..+. ..||.+|+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 11222111 348999999875
No 256
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.39 E-value=6e-12 Score=101.71 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.++.++|+++|..++|||||+.++.. ....+..+.+||+||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 67899999999999999999999962 2234567899999999988
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl~~ 137 (171)
..........+|++++|+|+.+...-+ ..+.+..+ .. .++|.+ +++||+|+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~-~~---~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEEecccCC
Confidence 765555567889999999998732211 11222222 21 366755 6899999865
No 257
>PRK12739 elongation factor G; Reviewed
Probab=99.39 E-value=4.6e-12 Score=108.87 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=77.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|+++|..++|||||+++++. +..++..++++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 44678999999999999999999963 33456788999999998
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+|...+...++.+|++++|+|+.+...-+. ...+..+ . ..++|+++++||+|+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~---~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-D---KYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCCC
Confidence 888888888999999999999987643322 1222222 2 247899999999999863
No 258
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.38 E-value=6.7e-12 Score=108.21 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=75.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------cccCceEEEEEecCC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------------------------IMTFRFKLNIWDVGG 75 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------------------------~~~~~~~~~i~d~~g 75 (171)
..+..+|+++|..++|||||+.++.. .+..+..+++|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 45678999999999999999999952 123467899999999
Q ss_pred ccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 76 QKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+.+|.......++.+|++++|+|+.+....+.. ..+.... ..+.|.++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH----HcCCCEEEEEEChhccc
Confidence 999888778889999999999999874322221 1122221 24678889999999864
No 259
>PLN03126 Elongation factor Tu; Provisional
Probab=99.38 E-value=5.8e-12 Score=103.72 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=74.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.++.++|+++|..++|||||++++++ +...+..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 67799999999999999999999983 2234567899999999998
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
.......+..+|++++|+|+.+... ....+++..+ .. .++| ++++.||+|+.+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccC
Confidence 7666666778999999999887532 2223333333 22 3678 778899999965
No 260
>CHL00071 tufA elongation factor Tu
Probab=99.38 E-value=8.4e-12 Score=101.30 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=73.7
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccc
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~ 78 (171)
..++.++|+++|..++|||||++++++ ...++..+.+.|+||+.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 367889999999999999999999985 122345678999999988
Q ss_pred hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
|.......+..+|++++|+|+..... ....+.+..+ .. .++| ++++.||+|+.+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCC
Confidence 86655666788999999999986432 2222223222 22 3678 778999999965
No 261
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.37 E-value=3.2e-12 Score=98.65 Aligned_cols=95 Identities=12% Similarity=0.186 Sum_probs=62.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------c--ccCceEEEEEecCCccchhH---H
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------I--MTFRFKLNIWDVGGQKSLRS---Y 82 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------~--~~~~~~~~i~d~~g~~~~~~---~ 82 (171)
-.++|+++|.+|+|||||++++.+ + ++..+.+.+|||||-..... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999987 1 11225689999999322110 0
Q ss_pred HH-----------------------Hhhh--CCCEEEEEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 83 WR-----------------------NYFE--STDGLIWVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 83 ~~-----------------------~~~~--~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
|. ..+. .+|+++++++.+... +... .+.+..+ . .++|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcC
Confidence 10 1222 478888888876521 2121 2223344 2 268999999999985
Q ss_pred C
Q psy11510 137 G 137 (171)
Q Consensus 137 ~ 137 (171)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 4
No 262
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.37 E-value=1.5e-11 Score=100.83 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=89.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cc------------------cC-------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IM------------------TF------------- 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~------------------~~------------- 64 (171)
....++|.++|.-..|||||++.+.+ +. ..
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 46789999999999999999999997 00 00
Q ss_pred -----ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q psy11510 65 -----RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL 139 (171)
Q Consensus 65 -----~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~ 139 (171)
...+.+.|+||+++|..........+|++++|+|+..+.......+.+. ++... .-.|+++|.||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHH
Confidence 1257899999999886655555678999999999987421111122222 22221 124689999999997522
Q ss_pred C----HHHHHHHH-----------HhhhccCCCHHHHHHHHHH
Q psy11510 140 T----PEDIKNVS-----------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 140 ~----~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~ 167 (171)
. .+++.+++ ..||.+|.|++.+++.|.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT 230 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence 1 12333322 2399999999999988874
No 263
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.37 E-value=7.2e-12 Score=106.74 Aligned_cols=122 Identities=13% Similarity=0.055 Sum_probs=81.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----cc------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----IM------------------------------------------------ 62 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----~~------------------------------------------------ 62 (171)
.++.++|+++|..++|||||+++++. +.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 56789999999999999999999997 11
Q ss_pred cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--
Q psy11510 63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-- 140 (171)
Q Consensus 63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-- 140 (171)
..+..+.++||||++.|..........+|++++|+|+.....-+ ..+.+. ++... ...|++++.||+|+.+...
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEecccccchhHH
Confidence 11226789999999888655555578999999999997643211 111111 11111 2367889999999964111
Q ss_pred H----HHHHHHH-----------HhhhccCCCHHH
Q psy11510 141 P----EDIKNVS-----------EKATKVKLNKQS 160 (171)
Q Consensus 141 ~----~~~~~~~-----------~~sa~~~~~v~~ 160 (171)
. +++.++. ..||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 1222211 238999999874
No 264
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.36 E-value=2.9e-12 Score=103.36 Aligned_cols=75 Identities=27% Similarity=0.473 Sum_probs=65.1
Q ss_pred ccc-CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 61 IMT-FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 61 ~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
+.. ....+.++|++||...+..|..++.++++|+||+++++ .+++.+....+..+.+.....+.|++++
T Consensus 230 f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~ 309 (389)
T PF00503_consen 230 FNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILF 309 (389)
T ss_dssp EEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred EEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEe
Confidence 344 67788999999999999999999999999999999854 3568888888999999888889999999
Q ss_pred EeCCCC
Q psy11510 130 ANKQDI 135 (171)
Q Consensus 130 ~nK~Dl 135 (171)
.||.|+
T Consensus 310 lnK~D~ 315 (389)
T PF00503_consen 310 LNKIDL 315 (389)
T ss_dssp EE-HHH
T ss_pred eecHHH
Confidence 999997
No 265
>PLN03127 Elongation factor Tu; Provisional
Probab=99.36 E-value=2e-11 Score=99.99 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=71.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.++.++|+++|..++|||||+.++.+ +..++..+.+.|+||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 67899999999999999999999962 2233457899999999888
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
..........+|++++|+|+.+... ....+.+..+ .. .++| ++++.||+|+.+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCC
Confidence 6655555667999999999876432 1222222222 22 3688 578899999964
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.36 E-value=1.8e-11 Score=89.87 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=79.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh----H----HH---HHh
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR----S----YW---RNY 86 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~----~----~~---~~~ 86 (171)
++|+++|.+|+||||+++.+++ ....+..+.++||||-.... . +. ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999997 12245678999999954331 1 11 112
Q ss_pred hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--------HHHHHHHHh-------
Q psy11510 87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP--------EDIKNVSEK------- 150 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~------- 150 (171)
..++|++++|+++.+.. ....+.+++.+++... .-.+++++.|++|....... ..+....+.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 35789999999987622 2233334444443321 23578889999987553221 222222211
Q ss_pred ------hhccCCCHHHHHHHHHHH
Q psy11510 151 ------ATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 151 ------sa~~~~~v~~~f~~l~~~ 168 (171)
++..+.++.++++.+.+.
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHH
Confidence 255567777777776543
No 267
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=94.97 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=92.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH-------HHHHhhhCC
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS-------YWRNYFEST 90 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~ 90 (171)
--.++++||.+++|||||++.+.+ +.+++.++++.|+||.-.-.+ ..-+..++|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 457899999999999999999999 678899999999998321111 123456899
Q ss_pred CEEEEEEeCCChhh-HHHHHHHHH----------------------------------------HHHhcccc--------
Q psy11510 91 DGLIWVVDSADKRR-LEDCARELH----------------------------------------ELLQEERL-------- 121 (171)
Q Consensus 91 ~~ii~v~d~~~~~s-~~~~~~~~~----------------------------------------~i~~~~~~-------- 121 (171)
|.+++|+|+..... .+.+...+. .++.+.+.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999986554 444433222 22222111
Q ss_pred ----------------CCCeEEEEEeCCCCCCCCCHHHHHHHH---HhhhccCCCHHHHHHHHHHH
Q psy11510 122 ----------------AGATLLVFANKQDIEGALTPEDIKNVS---EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 122 ----------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~sa~~~~~v~~~f~~l~~~ 168 (171)
.=+|.+.|.||.|+...-..+.+.+.. ..||+.+.|++++.+.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~ 287 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDV 287 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHh
Confidence 127999999999997732333333222 34999999999999988764
No 268
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.34 E-value=1.7e-11 Score=96.14 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=48.3
Q ss_pred EEEEeCCCCcHHHHHHHHhc---------------------c---------------------c-cCceEEEEEecCCc-
Q psy11510 41 VSLLRNKNGGETLILKKKKM---------------------I---------------------M-TFRFKLNIWDVGGQ- 76 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~---------------------~---------------------~-~~~~~~~i~d~~g~- 76 (171)
|.++|.++||||||++++.+ . + ...+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998 1 0 12367999999997
Q ss_pred ---cchhHHHHHh---hhCCCEEEEEEeCC
Q psy11510 77 ---KSLRSYWRNY---FESTDGLIWVVDSA 100 (171)
Q Consensus 77 ---~~~~~~~~~~---~~~~~~ii~v~d~~ 100 (171)
+.+..+...+ +++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5555555554 88999999999997
No 269
>KOG0099|consensus
Probab=99.32 E-value=3.3e-12 Score=95.83 Aligned_cols=75 Identities=25% Similarity=0.552 Sum_probs=66.9
Q ss_pred cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
+.-+.++++.+|++||.+-+..|-..+.++.++|||+..++ .+++++....++.+++......+.+|++.
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL 276 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL 276 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence 44466789999999999999999999999999999998755 55788888899999999888999999999
Q ss_pred eCCCC
Q psy11510 131 NKQDI 135 (171)
Q Consensus 131 nK~Dl 135 (171)
||+|+
T Consensus 277 NKqDl 281 (379)
T KOG0099|consen 277 NKQDL 281 (379)
T ss_pred cHHHH
Confidence 99997
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.32 E-value=6.4e-12 Score=84.18 Aligned_cols=119 Identities=12% Similarity=0.140 Sum_probs=83.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--cccCc---eEE---EEEecCCccchhHHH----HHhhhCCCEEEEEEeCCChhhH-H
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--IMTFR---FKL---NIWDVGGQKSLRSYW----RNYFESTDGLIWVVDSADKRRL-E 106 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--~~~~~---~~~---~i~d~~g~~~~~~~~----~~~~~~~~~ii~v~d~~~~~s~-~ 106 (171)
|+.++|..|+|||||.+++.+ .-.+. +.+ -.+||||.---+..| .....+++++++|-.++++.+. .
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC
Confidence 789999999999999999999 11111 122 146889832222222 2335689999999999987643 2
Q ss_pred HHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCCHHHHHHHHHH
Q psy11510 107 DCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~~ 167 (171)
.. +.. ....|+|-|.+|+|+++..+.+..++++ ++|+.++.|++++++.+..
T Consensus 83 p~---f~~------~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 83 PG---FLD------IGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cc---ccc------ccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 11 111 1346799999999999755655566665 5699999999999988764
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.31 E-value=7.4e-11 Score=98.68 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=64.2
Q ss_pred eEEEEEecCCccc-----hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-
Q psy11510 66 FKLNIWDVGGQKS-----LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL- 139 (171)
Q Consensus 66 ~~~~i~d~~g~~~-----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~- 139 (171)
..+.+.||||-.. +.......+.++|+|+||+|.....+..+ +.+.+.+... ..+.|+++|.||+|+.+.-
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~-~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAV-GQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence 4567889999643 12233446889999999999987433322 1122222221 1136999999999986421
Q ss_pred -CHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510 140 -TPEDIKNVS---------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 140 -~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~ 167 (171)
..+.+.++. ..||+.|.|++.+++.+.+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 244444442 2389999999999988865
No 272
>PRK00049 elongation factor Tu; Reviewed
Probab=99.30 E-value=3.7e-11 Score=97.13 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=72.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.++.++|+++|..++|||||+.++.+ ...++..+.+.||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 57899999999999999999999975 1123567889999999887
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl~~ 137 (171)
..........+|++++|+|+..... ....+.+..+ .. .++|.+ ++.||+|+.+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcc
Confidence 6655566789999999999987432 2222223222 22 368876 5899999964
No 273
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=5.7e-11 Score=89.86 Aligned_cols=131 Identities=16% Similarity=0.283 Sum_probs=92.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-------hhHHHHHhh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-------LRSYWRNYF 87 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-------~~~~~~~~~ 87 (171)
..++++|+++|..|+||||++|.+.. ..++.-.+.+||+||-++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 56889999999999999999999994 233445689999999654 666677778
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------CCHHHHHHHHHh--------
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------LTPEDIKNVSEK-------- 150 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~-------- 150 (171)
.+.|.++.+.+..++. +.--..++.++.... -+.+++++.|.+|...+ .+...++.+++.
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999987753 222233455554332 35899999999998653 233444444422
Q ss_pred ----------hhccCCCHHHHHHHHHHH
Q psy11510 151 ----------ATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 151 ----------sa~~~~~v~~~f~~l~~~ 168 (171)
+...+-|++.+...+++.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHh
Confidence 345567777777776654
No 274
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.30 E-value=6.7e-12 Score=94.80 Aligned_cols=70 Identities=16% Similarity=0.008 Sum_probs=37.7
Q ss_pred EEEEEecCCccchhHHHHHhh--------hCCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 67 KLNIWDVGGQKSLRSYWRNYF--------ESTDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 67 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
.+.++|||||-++-..|.... ...-++++++|+....+ -..+...+..+.-.. ..+.|.+.|.||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence 789999999988777666544 34678899999764332 122222222221111 13799999999999976
No 275
>PRK00007 elongation factor G; Reviewed
Probab=99.28 E-value=4.2e-11 Score=103.00 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|+++|..++|||||+++++. +...+..+++.||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 44567999999999999999999963 23346688999999998
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+|.......++.+|++++|+|+.....-+. ...+..+. ..++|.+++.||+|+.+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~----~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD----KYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 887666666788999999999887643332 22222332 247899999999999863
No 276
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6.2e-11 Score=94.01 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.+++++++++|...+|||||+-+++. +..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 57899999999999999999999998 5556
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
...+.+.|+||+.+|-...-.-...||+.|+|+|+.+.+. | ....+ ..-+.... .-..+||+.||.|+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tl--Gi~~lIVavNKMD~v~- 159 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTL--GIKQLIVAVNKMDLVS- 159 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhc--CCceEEEEEEcccccc-
Confidence 7789999999999887766666788999999999988631 1 11111 11111111 1346888899999987
Q ss_pred CCHHHH
Q psy11510 139 LTPEDI 144 (171)
Q Consensus 139 ~~~~~~ 144 (171)
.+++..
T Consensus 160 wde~rf 165 (428)
T COG5256 160 WDEERF 165 (428)
T ss_pred cCHHHH
Confidence 454443
No 277
>PRK12740 elongation factor G; Reviewed
Probab=99.26 E-value=5.5e-11 Score=102.03 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=71.1
Q ss_pred EeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHHHHHh
Q psy11510 44 LRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSYWRNY 86 (171)
Q Consensus 44 iG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~~~~~ 86 (171)
+|..++|||||++++.. +...+..+++|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999954 23356789999999999888888888
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+..+|++++|+|++...+...... +..+. ..++|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~~~~~----~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-WRQAE----KYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-HHHHH----HcCCCEEEEEECCCCCCC
Confidence 999999999999988765544322 22232 247899999999999763
No 278
>KOG0085|consensus
Probab=99.25 E-value=2.3e-12 Score=95.28 Aligned_cols=111 Identities=18% Similarity=0.337 Sum_probs=87.2
Q ss_pred cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC----------CChhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADKRRLEDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
.+...+.+.+.|++||..-+..|-..+.+...++|++.+ ++.+++++....+..++..+...+.++|++.
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 344567788999999999999999999999888887664 4466788888999999999999999999999
Q ss_pred eCCCCCC------------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHhC
Q psy11510 131 NKQDIEG------------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 131 nK~Dl~~------------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~~ 171 (171)
||.|+.+ ..+.+..++++ .+.|.+.+||+-+|...-+.|++
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 9999843 12233344443 34688889999999988877763
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.22 E-value=2.7e-10 Score=88.46 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=68.8
Q ss_pred cccCCC-CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHH---
Q psy11510 29 LRHRPQ-VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWR--- 84 (171)
Q Consensus 29 ~~~~~~-~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~--- 84 (171)
+.+++. ..+.++|+++|.+|+||||+++++++ ....+..+.++||||.........
T Consensus 28 l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~ 107 (313)
T TIGR00991 28 LGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAV 107 (313)
T ss_pred HHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHH
Confidence 444444 56789999999999999999999997 112456899999999765422211
Q ss_pred ----Hhh--hCCCEEEEEEeCCC--hhhH-HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 85 ----NYF--ESTDGLIWVVDSAD--KRRL-EDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 85 ----~~~--~~~~~ii~v~d~~~--~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
.++ ...|+++||.+++. .... ..+.+.+..++... --.+.+++.|++|...
T Consensus 108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 111 25899999965442 2212 22333333433221 1246899999999753
No 280
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.22 E-value=1.8e-10 Score=89.47 Aligned_cols=130 Identities=20% Similarity=0.177 Sum_probs=86.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCCccchhH----H---HHHhhhCCCE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGGQKSLRS----Y---WRNYFESTDG 92 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g~~~~~~----~---~~~~~~~~~~ 92 (171)
-|-+||.+++|||||++.+.. +. ...-.+.+=|+||.-.-.+ + .-.++++|.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 456899999999999999998 12 2334477789998321111 1 2234567999
Q ss_pred EEEEEeCCChhh---HHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCC-CCHHHHHHHHH----------hhhccCCC
Q psy11510 93 LIWVVDSADKRR---LEDCARELHELLQ-EERLAGATLLVFANKQDIEGA-LTPEDIKNVSE----------KATKVKLN 157 (171)
Q Consensus 93 ii~v~d~~~~~s---~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~----------~sa~~~~~ 157 (171)
+++|+|++..+. .+..+....++-. .....++|.++|+||+|+... -..++..+.+. .||.++.|
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence 999999986442 3443333333322 244568999999999997552 22233333332 78999999
Q ss_pred HHHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNEV 169 (171)
Q Consensus 158 v~~~f~~l~~~i 169 (171)
++++...+.+.+
T Consensus 321 ~~~L~~~~~~~l 332 (369)
T COG0536 321 LDELLRALAELL 332 (369)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 281
>KOG1191|consensus
Probab=99.22 E-value=6.5e-11 Score=95.50 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=91.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccch--hH-------HHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSL--RS-------YWRN 85 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~--~~-------~~~~ 85 (171)
-+..++|+++|.+|||||||+|.+.+ ++..+.++.+.||+|-..- .. -...
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 34669999999999999999999998 6677899999999996541 11 1223
Q ss_pred hhhCCCEEEEEEeC--CChhhHHHHHHHHHHHHh-----ccccCCCeEEEEEeCCCCCCCCCHHH------H--------
Q psy11510 86 YFESTDGLIWVVDS--ADKRRLEDCARELHELLQ-----EERLAGATLLVFANKQDIEGALTPED------I-------- 144 (171)
Q Consensus 86 ~~~~~~~ii~v~d~--~~~~s~~~~~~~~~~i~~-----~~~~~~~p~ivv~nK~Dl~~~~~~~~------~-------- 144 (171)
-++.+|++++|+|+ +.-++--.+.+.+...-. ..+....|++++.||.|+....+.-. .
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 46689999999999 332222222233333211 12224589999999999966421110 0
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHH
Q psy11510 145 KNVSEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 145 ~~~~~~sa~~~~~v~~~f~~l~~~i 169 (171)
.-..++|+.++++.+.+.+.+....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHH
Confidence 1111478999999999988776543
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.22 E-value=1.8e-10 Score=84.92 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHH----------HhhhccCCC
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKNVS----------EKATKVKLN 157 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~----------~~sa~~~~~ 157 (171)
+|.++.|+|+.+..+... ....++ ...-++++||+|+.+..+ .+.+.+.. ++|+++|+|
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 183 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG 183 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 577899999987655321 111111 223478899999986322 33323222 669999999
Q ss_pred HHHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNEV 169 (171)
Q Consensus 158 v~~~f~~l~~~i 169 (171)
++++|+++.+..
T Consensus 184 i~el~~~i~~~~ 195 (199)
T TIGR00101 184 LDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
No 283
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.21 E-value=1.6e-10 Score=101.99 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=49.8
Q ss_pred EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+.+|||||++.|..+....+..+|++++|+|+++ +++++.+. ++.. .++|+++|+||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCcc
Confidence 7999999999998888888889999999999987 55555442 2222 3689999999999963
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.21 E-value=7.2e-11 Score=103.40 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=76.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------ccc----------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMT---------------- 63 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~---------------- 63 (171)
..+..+|+++|..++|||||+.+++. +..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 56678999999999999999999975 111
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
.+..++++||||+.+|.......++.+|+.++|+|+...-.... +..+..+.. .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 25678999999999998877777899999999999987644332 222333332 478999999999997
No 285
>PTZ00416 elongation factor 2; Provisional
Probab=99.18 E-value=1e-10 Score=102.30 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=75.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cc----------cCceEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IM----------TFRFKLN 69 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~----------~~~~~~~ 69 (171)
..+..+|+++|..++|||||+.+++. .. ..+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45567999999999999999999985 01 1145688
Q ss_pred EEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
+.||||+.+|.......++.+|++++|+|+...-.-.. ...+..+.+ .++|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999887777777899999999999988543332 233344432 468999999999997
No 286
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.18 E-value=1.9e-10 Score=82.02 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=44.4
Q ss_pred ceEEEEEecCCccc----hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 65 RFKLNIWDVGGQKS----LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 65 ~~~~~i~d~~g~~~----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
...+.++|+||-.. ...++..++..+|++++|.+++...+-.....+.... .. .+...++|.||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 34578999999532 3357888889999999999999865544444433333 22 244588889984
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.15 E-value=5.1e-10 Score=96.87 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=74.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------c----ccCceEEEEEecCC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------I----MTFRFKLNIWDVGG 75 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~----~~~~~~~~i~d~~g 75 (171)
..+..+|+++|..++|||||+.+++. . ...+..+++.||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 45667899999999999999999975 0 11356789999999
Q ss_pred ccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 76 QKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+.+|.......++.+|++++|+|+.....-+ ....+..... .+.|.+++.||+|+..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 9999887778889999999999988753322 2222233222 2567899999999864
No 288
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.15 E-value=4.2e-10 Score=90.50 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=80.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS 81 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~ 81 (171)
+.-+|++|-.-..|||||+..++. +.+.++.+++.||||+.+|--
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 456899999999999999999997 677889999999999999988
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK 145 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 145 (171)
.-+..+.=+|++++++|+.+.. +.+.+--+.+-+. .+.+.|+|.||+|.+++-+.+-+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd 142 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVD 142 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHH
Confidence 7777788899999999998843 2222222333333 477888899999999865544333
No 289
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3e-10 Score=90.67 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=84.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV 73 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~ 73 (171)
..++-..++|-.+.+|||||-++++. +++.+..+++.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 34667889999999999999999987 7788999999999
Q ss_pred CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH
Q psy11510 74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE 142 (171)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 142 (171)
||+++|..-....+..+|+.++|+|+...-.-+. .++.+-.+.+++|++-++||.|.....+.+
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFiNKlDR~~rdP~E 152 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFINKLDREGRDPLE 152 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEeeccccccCChHH
Confidence 9999998877777889999999999987432222 234445566899999999999998755543
No 290
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.13 E-value=1.1e-09 Score=86.33 Aligned_cols=122 Identities=9% Similarity=0.086 Sum_probs=82.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
..+.+.|.+.|++|+|||||+..+..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 45678999999999999999998766
Q ss_pred -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
.+..+..+.+.||+|...-... ....+|.+++|.+...++.+..+. ..+++ ..-++|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiV 200 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIV 200 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEE
Confidence 2223456678888886522222 355699999997755554444332 22322 234799
Q ss_pred EeCCCCCCCCC----HHHHHHHH---------------HhhhccCCCHHHHHHHHHHH
Q psy11510 130 ANKQDIEGALT----PEDIKNVS---------------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 130 ~nK~Dl~~~~~----~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~~ 168 (171)
.||+|+..... ..++...+ .+||.++.|++++++.+.+.
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~ 258 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH 258 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 99999875322 12233222 35999999999999998764
No 291
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.13 E-value=1e-09 Score=83.44 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=66.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH-------H---HH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS-------Y---WR 84 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~-------~---~~ 84 (171)
....++|+++|.+|||||||++.+.+ ....+..+.+|||||-..... . ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 56789999999999999999999998 122456789999999654411 0 12
Q ss_pred Hhhh--CCCEEEEEEeCCChh-hHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 85 NYFE--STDGLIWVVDSADKR-RLE--DCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 85 ~~~~--~~~~ii~v~d~~~~~-s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
.++. ..|++++|..++... +.. .+...+.+.+... --.++++|.||+|...
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCC
Confidence 2333 578888887655421 222 2333334433211 1256999999999854
No 292
>KOG1490|consensus
Probab=99.11 E-value=2.6e-10 Score=92.37 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=97.6
Q ss_pred cccCCC-CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----HH-
Q psy11510 29 LRHRPQ-VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----YW- 83 (171)
Q Consensus 29 ~~~~~~-~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----~~- 83 (171)
++++++ ..+.-.++++|.++||||||++.+.. +++.-..+++.||||.-+... ..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence 445555 66788999999999999999998887 455556778889999433211 11
Q ss_pred ----HHhhhCCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHH--HHHHH-----
Q psy11510 84 ----RNYFESTDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPED--IKNVS----- 148 (171)
Q Consensus 84 ----~~~~~~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~--~~~~~----- 148 (171)
....+-..+++|+.|++... |..+-...++.+ .+...+.|+|+|+||+|+-. .++++. +.+.+
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 11223357889999999854 566666777777 44467999999999999865 333322 22221
Q ss_pred ----HhhhccCCCHHHHHHHHHHHHh
Q psy11510 149 ----EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 149 ----~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
++|+.+.+||-++-..++...+
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHH
Confidence 5688888999888777776553
No 293
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.09 E-value=1.7e-09 Score=80.39 Aligned_cols=100 Identities=13% Similarity=0.035 Sum_probs=63.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccch----hH----HHH---Hh
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSL----RS----YWR---NY 86 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~----~~----~~~---~~ 86 (171)
++|+|+|..|+||||+++.+++ ....+..+.++||||-... .. +.. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998 2234678999999993221 11 111 12
Q ss_pred hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510 87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALT 140 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~ 140 (171)
..+.|++++|++..... .-....+++..++..... .-++||.|.+|......
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDS 133 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTT
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhcccccccc
Confidence 34689999999988422 123344556666554322 34777788887766444
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.08 E-value=1.7e-09 Score=81.13 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=66.3
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
...+...|+++|.+|+|||||++.+.. ....+..+.++|+||.. ..+. ...+.+|++++|+
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllvi 111 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLI 111 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEEEecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEE
Confidence 356788999999999999999998887 11244567899999853 2333 3357899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeE-EEEEeCCCCCC
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATL-LVFANKQDIEG 137 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~Dl~~ 137 (171)
|++....... .. +...+.. .+.|. ++|.||.|+.+
T Consensus 112 Da~~~~~~~~-~~-i~~~l~~---~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 112 DASFGFEMET-FE-FLNILQV---HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred ecCcCCCHHH-HH-HHHHHHH---cCCCeEEEEEeccccCC
Confidence 9876543322 12 2222222 35674 55999999864
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.07 E-value=1.3e-10 Score=88.28 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=68.4
Q ss_pred cchhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHH-----
Q psy11510 77 KSLRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTPEDIKNVS----- 148 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~----- 148 (171)
+++..+.+.+++++|++++|+|++++. +++.+.+|+..+.. .++|+++|+||+|+.+. ...+.+..+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCe
Confidence 577777888999999999999999877 89999999876632 57999999999999652 1222233232
Q ss_pred --HhhhccCCCHHHHHHHHHH
Q psy11510 149 --EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 149 --~~sa~~~~~v~~~f~~l~~ 167 (171)
++||++|.|++++|+.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 5699999999999988764
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.06 E-value=1.2e-09 Score=80.89 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=34.0
Q ss_pred CCeEEEEEeCCCCCCCC--CHHHHHHHH----------HhhhccCCCHHHHHHHHHHH
Q psy11510 123 GATLLVFANKQDIEGAL--TPEDIKNVS----------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 123 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~ 168 (171)
..|.++++||+|+.+.. ..++..+.+ .+||++|.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999997532 223333332 45999999999999999865
No 297
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.04 E-value=3.3e-09 Score=82.90 Aligned_cols=122 Identities=15% Similarity=0.121 Sum_probs=75.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
..+...|.++|++|+|||||+..+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG 110 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence 45678889999999999999999776
Q ss_pred -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
.+..++.+.+.||+|..... ......+|.++++.+... -+++......+ .++|.++|
T Consensus 111 ~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l------~~~~~ivv 178 (300)
T TIGR00750 111 LSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL------MEIADIYV 178 (300)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH------hhhccEEE
Confidence 01113444555555532111 122445667766643332 23333323333 35788999
Q ss_pred EeCCCCCCCCCHHH--------HHH-----------HHHhhhccCCCHHHHHHHHHHH
Q psy11510 130 ANKQDIEGALTPED--------IKN-----------VSEKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 130 ~nK~Dl~~~~~~~~--------~~~-----------~~~~sa~~~~~v~~~f~~l~~~ 168 (171)
.||+|+........ +.. ...+||+++.|++++++.+.+.
T Consensus 179 ~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 179 VNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred EEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 99999976432211 011 1246999999999999998764
No 298
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.01 E-value=1.1e-09 Score=87.06 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=55.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCc-eEEEEEecCCccchhHHHHHh-----h
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFR-FKLNIWDVGGQKSLRSYWRNY-----F 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~-~~~~i~d~~g~~~~~~~~~~~-----~ 87 (171)
..+++|+|+|.+|+|||||||.+.+ ...+. -++.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4679999999999999999999987 12222 248999999965433333444 4
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
...|.+|++.+. +|....-++..-++. .++|+.+|-+|+|.
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 468988876652 244433334443333 48999999999985
No 299
>KOG3905|consensus
Probab=99.00 E-value=7.4e-09 Score=80.21 Aligned_cols=134 Identities=14% Similarity=0.147 Sum_probs=92.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhC---C-CE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFES---T-DG 92 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~---~-~~ 92 (171)
..-+|+++|..++|||||+.++.+ -..+...+.+|-..|...+..+....+.. + ..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 456899999999999999999998 11234678899988876665554443332 3 45
Q ss_pred EEEEEeCCChhh-HHHHHHHHHHHHhc------------------------cc-----c---------------------
Q psy11510 93 LIWVVDSADKRR-LEDCARELHELLQE------------------------ER-----L--------------------- 121 (171)
Q Consensus 93 ii~v~d~~~~~s-~~~~~~~~~~i~~~------------------------~~-----~--------------------- 121 (171)
+|++.|.+++.+ ++.++.|..-+.++ +. .
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 688899999955 46666665422210 00 0
Q ss_pred ----------CCCeEEEEEeCCCCCC----C--CC-------HHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 122 ----------AGATLLVFANKQDIEG----A--LT-------PEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 122 ----------~~~p~ivv~nK~Dl~~----~--~~-------~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
.++|++||++|||... . -. +..+++++ .+|++...|++-+...|.+.+|
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 1699999999999832 1 11 12344444 6699999999999999887765
No 300
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=5.8e-09 Score=89.12 Aligned_cols=98 Identities=16% Similarity=0.309 Sum_probs=79.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccC-ceEEEEEecCCc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTF-RFKLNIWDVGGQ 76 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~-~~~~~i~d~~g~ 76 (171)
..+..+|.++|+..+||||+..+++. .... +..++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45778999999999999999999998 3344 589999999999
Q ss_pred cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
-+|...-...++-+|+.+.|+|+...-..+. + .++++....++|.+++.||.|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-E----tv~rqa~~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-E----TVWRQADKYGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-H----HHHHHHhhcCCCeEEEEECccccc
Confidence 9999888888899999999999988643332 1 222333335899999999999976
No 301
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.96 E-value=1.3e-08 Score=76.90 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=42.5
Q ss_pred eEEEEEecCCccc-------------hhHHHHHhhhC-CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510 66 FKLNIWDVGGQKS-------------LRSYWRNYFES-TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFAN 131 (171)
Q Consensus 66 ~~~~i~d~~g~~~-------------~~~~~~~~~~~-~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 131 (171)
..+.+.|+||-.. ...+...|+++ .+.+++|+|+...-+-....+....+ ...+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence 5678999999642 12245567774 45788889876532211211222222 225789999999
Q ss_pred CCCCCC
Q psy11510 132 KQDIEG 137 (171)
Q Consensus 132 K~Dl~~ 137 (171)
|+|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999976
No 302
>KOG3886|consensus
Probab=98.95 E-value=3.3e-09 Score=78.48 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=71.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhH-----HHHHhhhCC
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRS-----YWRNYFEST 90 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~ 90 (171)
..-||+++|.+|+|||++-.-+.. . --+++.+++||.+||+.+.. ....-+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 456999999999999998766653 1 12347789999999986543 223457789
Q ss_pred CEEEEEEeCCChhhHHH---HHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 91 DGLIWVVDSADKRRLED---CARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+++++|||++..+-... .+.-++.+++. .|...+++..+|.|+..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcc
Confidence 99999999988653333 33334455444 46788899999999976
No 303
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.94 E-value=1.2e-08 Score=78.93 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=63.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------------------------cccCceEEEEEecCCccc-------h
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------------------------IMTFRFKLNIWDVGGQKS-------L 79 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------------------------~~~~~~~~~i~d~~g~~~-------~ 79 (171)
.++|+|+|.+|+|||||++.+.+ -++..+.+.++||||-.. +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998 223456789999999221 1
Q ss_pred hHH-------HHHhh-------------hCCCEEEEEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 80 RSY-------WRNYF-------------ESTDGLIWVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 80 ~~~-------~~~~~-------------~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
..+ ...++ ..+|+++|.++.+... +..+ .+.++.+. ..+++|-|+.|+|.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~--- 154 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADT--- 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGG---
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccc---
Confidence 110 11111 1479999999976532 2222 23345552 46899999999997
Q ss_pred CCHHHHHHH
Q psy11510 139 LTPEDIKNV 147 (171)
Q Consensus 139 ~~~~~~~~~ 147 (171)
...+|+..+
T Consensus 155 lt~~el~~~ 163 (281)
T PF00735_consen 155 LTPEELQAF 163 (281)
T ss_dssp S-HHHHHHH
T ss_pred cCHHHHHHH
Confidence 444554433
No 304
>KOG1144|consensus
Probab=98.93 E-value=7.9e-09 Score=87.17 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=71.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc----------------------------------ccc--Cce-EEEEEecCCccch
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM----------------------------------IMT--FRF-KLNIWDVGGQKSL 79 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~----------------------------------~~~--~~~-~~~i~d~~g~~~~ 79 (171)
+.--|+++|...+|||-|+..+.+ ... -.+ -+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 344588999999999999999987 011 111 2578999999999
Q ss_pred hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
..+.......||..|+|+|+-. +++.+.+ .+++ .++.|+||.+||+|.
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR---~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLR---MRKTPFIVALNKIDR 604 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHH-----HHHH---hcCCCeEEeehhhhh
Confidence 9999999999999999999855 5566554 2222 368999999999997
No 305
>KOG1707|consensus
Probab=98.93 E-value=1.7e-08 Score=83.13 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=92.9
Q ss_pred ccCCCCCceeEEEEEeCCCCcHHHHHHHHhc---------cccCceEEEEEecCCccchhHHHH------Hh----hhCC
Q psy11510 30 RHRPQVSNVAVVSLLRNKNGGETLILKKKKM---------IMTFRFKLNIWDVGGQKSLRSYWR------NY----FEST 90 (171)
Q Consensus 30 ~~~~~~~~~~ki~liG~~~~GKttli~~~~~---------~~~~~~~~~i~d~~g~~~~~~~~~------~~----~~~~ 90 (171)
++....++.+++.++|+.++|||.+++.+++ .....+.++..+..|++.+--+.+ .+ -..|
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke~~c 496 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKEAAC 496 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCcccee
Confidence 3344478899999999999999999999998 222345566666667654432211 01 1469
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-----CCCHHHHHHHH------HhhhccCCCHH
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-----ALTPEDIKNVS------EKATKVKLNKQ 159 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~------~~sa~~~~~v~ 159 (171)
|+++++||++++.+|+.+.+.+..-... ...|++.|++|+|+.+ ++.+++..... ..|.++... .
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~ 572 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-N 572 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-c
Confidence 9999999999999999887655544222 6899999999999976 23444444444 224553222 6
Q ss_pred HHHHHHHHHH
Q psy11510 160 SKFQVLLNEV 169 (171)
Q Consensus 160 ~~f~~l~~~i 169 (171)
++|..|+...
T Consensus 573 ~lf~kL~~~A 582 (625)
T KOG1707|consen 573 ELFIKLATMA 582 (625)
T ss_pred hHHHHHHHhh
Confidence 7887776543
No 306
>KOG0458|consensus
Probab=98.89 E-value=2.3e-08 Score=82.35 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
++..+..+++|...+|||||+-+++. ++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 67899999999999999999999998 5556
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHH------HHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC------ARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~------~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
...+.+.|.||+.+|.+-.-.-...+|+.++|+|++... |+.- -+....+++.. .-.-++|++||.|+.+
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVS 329 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccC
Confidence 678899999999998876666677899999999987632 2211 11223333332 2456888999999977
No 307
>KOG0468|consensus
Probab=98.88 E-value=7.8e-09 Score=86.35 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=80.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV 73 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~ 73 (171)
+....++.++|.-..|||+|+.-+.. ..++...+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 55678999999999999999998887 4556678999999
Q ss_pred CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
||+-.|.......++-+|++++|+|+.+.-+++.=+. ++.. ...+.|+.+|+||.|..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikha----iq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHA----IQNRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHH----HhccCcEEEEEehhHHH
Confidence 9999998888888999999999999999887765322 3333 23579999999999974
No 308
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.87 E-value=1.9e-08 Score=81.32 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=49.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc------------------c-c------------------------cCceEEEEEecCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM------------------I-M------------------------TFRFKLNIWDVGG 75 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~------------------~-~------------------------~~~~~~~i~d~~g 75 (171)
++|.++|.+|||||||++++.+ . . ....++++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998 0 0 1125688999999
Q ss_pred c----cchhHHHHHh---hhCCCEEEEEEeCC
Q psy11510 76 Q----KSLRSYWRNY---FESTDGLIWVVDSA 100 (171)
Q Consensus 76 ~----~~~~~~~~~~---~~~~~~ii~v~d~~ 100 (171)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3444455555 78999999999997
No 309
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.3e-08 Score=78.73 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=91.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------c------ccCceE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM------------------------------------------I------MTFRFK 67 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~------------------------------------------~------~~~~~~ 67 (171)
++.++|-++|.-..||||+.+.+.+ . ..-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999998 0 011235
Q ss_pred EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHH
Q psy11510 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA----LTPED 143 (171)
Q Consensus 68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~ 143 (171)
+.+.|.||++-.....-+-..--|+.++|+.++.+..=.+..+.+..+ +- ..-.-++++-||.|+... -+.++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eI--igik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EI--IGIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hh--hccceEEEEecccceecHHHHHHHHHH
Confidence 789999999866553333233359999999998844333333333333 11 123568899999999651 23445
Q ss_pred HHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 144 IKNVS-----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 144 ~~~~~-----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
+.++. ..||..+.|++.+++.+.+.|
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 55555 339999999999999998765
No 310
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.87 E-value=2e-09 Score=81.30 Aligned_cols=121 Identities=12% Similarity=0.173 Sum_probs=76.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
..+.+.|-+.|++|+|||||+..+..
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 34678999999999999999999987
Q ss_pred -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
++.-.+.+.+.+|.|.-.-.. ....-+|.+++|......+..+-++.=+.++ +-++|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~v 173 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFV 173 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEE
Confidence 333445555666666332221 1234589999999877766555444323333 55789
Q ss_pred EeCCCCCCC-CCHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510 130 ANKQDIEGA-LTPEDIKNVS---------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 130 ~nK~Dl~~~-~~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~ 167 (171)
.||+|.+.+ ....+++..+ .+||.++.|++++++.+.+
T Consensus 174 VNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 174 VNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp EE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 999997652 1223333333 4589999999999988864
No 311
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.80 E-value=1.3e-08 Score=78.52 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=33.6
Q ss_pred CCeEEEEEeCCCCCCCC--CHHHHHHHH----------HhhhccCCCHHHHHHHHHHH
Q psy11510 123 GATLLVFANKQDIEGAL--TPEDIKNVS----------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 123 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~ 168 (171)
..+-++|+||+|+.... +.+++.+.+ ..|+++|+|++++.+++...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46778999999997532 233333333 44999999999999999764
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.79 E-value=1.7e-08 Score=73.00 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=44.6
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCCC--CHHHHHHHH----------HhhhccCCC
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQ-EERLAGATLLVFANKQDIEGAL--TPEDIKNVS----------EKATKVKLN 157 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------~~sa~~~~~ 157 (171)
+.-|+|+|++..+-- -++ .+.... .-++|+||.|+...+ +.+...+.. .++.++|.|
T Consensus 119 ~~~v~VidvteGe~~---------P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 119 HLRVVVIDVTEGEDI---------PRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred ceEEEEEECCCCCCC---------cccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 366777777765311 001 222223 678899999998743 334443333 569999999
Q ss_pred HHHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNEV 169 (171)
Q Consensus 158 v~~~f~~l~~~i 169 (171)
.+++++++....
T Consensus 189 ~~~~~~~i~~~~ 200 (202)
T COG0378 189 LDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 313
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.79 E-value=5e-08 Score=76.35 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=71.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------cc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------IM 62 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------~~ 62 (171)
.+..++++-+|.-.-|||||+=|++. +.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 35679999999999999999999998 33
Q ss_pred cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHH--HHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAR--ELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
-++-++.+-||||++.|....-.-..-||+.|+++|+...- +++.++ ++..++. =.-+++..||+||.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvd 153 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG-----IRHVVVAVNKMDLVD 153 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC-----CcEEEEEEeeecccc
Confidence 45667889999999988665555566799999999985531 222221 2333332 245778889999987
No 314
>KOG0410|consensus
Probab=98.78 E-value=2.9e-08 Score=76.91 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=84.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCc---------cchhHHHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQ---------KSLRSYWRN 85 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~---------~~~~~~~~~ 85 (171)
....--|.++|..|+|||||++++.. .-..+-.+-+.||.|= ..|+...+.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 34456799999999999999999998 1123345677799981 112221111
Q ss_pred hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe----EEEEEeCCCCCCCCCHHHHHHHHHhhhccCCCHHHH
Q psy11510 86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT----LLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSK 161 (171)
Q Consensus 86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~~v~~~ 161 (171)
...+|.++-|.|++.|+.-..... ....+++...+..| ++=|=||.|......++|-....-.|+++|+|.++.
T Consensus 255 -VaeadlllHvvDiShP~ae~q~e~-Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~v~isaltgdgl~el 332 (410)
T KOG0410|consen 255 -VAEADLLLHVVDISHPNAEEQRET-VLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLDVGISALTGDGLEEL 332 (410)
T ss_pred -HhhcceEEEEeecCCccHHHHHHH-HHHHHHhcCCCcHHHHhHHHhhccccccccccCccccCCccccccccCccHHHH
Confidence 347999999999999876554433 33344444444444 334558888766444433333456699999999998
Q ss_pred HHHHHH
Q psy11510 162 FQVLLN 167 (171)
Q Consensus 162 f~~l~~ 167 (171)
...+-.
T Consensus 333 ~~a~~~ 338 (410)
T KOG0410|consen 333 LKAEET 338 (410)
T ss_pred HHHHHH
Confidence 776543
No 315
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.76 E-value=1e-07 Score=78.45 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=56.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCCccchhHHHHHhhhC----CC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFES----TD 91 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~ 91 (171)
...-.|+|+|..++|||||+.+|.+ -+ .+...+++|-..|...+..+.+..+.. --
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 3567899999999999999999987 11 123578999999876676665554442 35
Q ss_pred EEEEEEeCCChhhH-HHHHHHHH
Q psy11510 92 GLIWVVDSADKRRL-EDCARELH 113 (171)
Q Consensus 92 ~ii~v~d~~~~~s~-~~~~~~~~ 113 (171)
.+++|+|.+.|..+ +.+..|+.
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~ 125 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLS 125 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHH
Confidence 67888999998765 44555443
No 316
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.73 E-value=1e-07 Score=73.29 Aligned_cols=121 Identities=11% Similarity=0.153 Sum_probs=78.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
..+...|-+.|.+|+|||||+..|..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 55778999999999999999999987
Q ss_pred -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
++...+-+.|.+|.|.-.-..- ...-+|.+++|.=..-.+..+-++. .++ .+.-++|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim------EiaDi~v 195 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKA---GIM------EIADIIV 195 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHh---hhh------hhhheee
Confidence 3333444455555553322211 1234788888776666655555443 332 2355689
Q ss_pred EeCCCCCCC-CCHHHHHHHH-----------------HhhhccCCCHHHHHHHHHH
Q psy11510 130 ANKQDIEGA-LTPEDIKNVS-----------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 130 ~nK~Dl~~~-~~~~~~~~~~-----------------~~sa~~~~~v~~~f~~l~~ 167 (171)
.||.|..++ ....++...+ .++|.+|+|++++++.+.+
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence 999997663 1222222222 5699999999999988754
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.68 E-value=5.4e-07 Score=72.53 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=64.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------cccCceEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------IMTFRFKLN 69 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------~~~~~~~~~ 69 (171)
.-.+.|.++|+.++|||||+++|.+ .++...++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 3578999999999999999999998 223346788
Q ss_pred EEecCCccc--------hhH------H---------------HHHhhh-CCCEEEEEE-eCC--C--hhhHHHH-HHHHH
Q psy11510 70 IWDVGGQKS--------LRS------Y---------------WRNYFE-STDGLIWVV-DSA--D--KRRLEDC-ARELH 113 (171)
Q Consensus 70 i~d~~g~~~--------~~~------~---------------~~~~~~-~~~~ii~v~-d~~--~--~~s~~~~-~~~~~ 113 (171)
+.|++|-.. ... . ....+. +++.-++|. |.+ + ++.+.+. .+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999211 000 0 234455 788888888 653 1 1122222 23344
Q ss_pred HHHhccccCCCeEEEEEeCCCC
Q psy11510 114 ELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 114 ~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
.+. ..++|++++.||+|-
T Consensus 175 eLk----~~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELK----ELNKPFIILLNSTHP 192 (492)
T ss_pred HHH----hcCCCEEEEEECcCC
Confidence 442 258999999999994
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.66 E-value=2.3e-07 Score=78.40 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=63.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh-------HH---HHHh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR-------SY---WRNY 86 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~-------~~---~~~~ 86 (171)
..++|+++|.+|+||||++|.+++ ....+..+.++||||-.... .+ ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 457999999999999999999998 11234678999999965421 11 1123
Q ss_pred hh--CCCEEEEEEeCCChhhH-H--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 87 FE--STDGLIWVVDSADKRRL-E--DCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 87 ~~--~~~~ii~v~d~~~~~s~-~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+. .+|++++|..++..... + .+.+.+..+..... -.-+|||.|+.|...
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 33 48999999877543221 2 22233444433211 144677789888765
No 319
>KOG1954|consensus
Probab=98.65 E-value=2.6e-07 Score=72.93 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------------
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------------------------------------------- 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------------------------------------------- 60 (171)
-=|+++|+-+.|||||++.++.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 3589999999999999999998
Q ss_pred --ccc-CceEEEEEecCCcc-----------chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeE
Q psy11510 61 --IMT-FRFKLNIWDVGGQK-----------SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126 (171)
Q Consensus 61 --~~~-~~~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ 126 (171)
+.+ ---.+++.||||.- .|....+=|...||.|+++||++.-+--++..+.+..+..+ .=.+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Edki 214 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKI 214 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----ccee
Confidence 111 12357899999932 24445666778999999999988755444444445555433 3456
Q ss_pred EEEEeCCCCCCCCCHHHHHHHH
Q psy11510 127 LVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 127 ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
-||.||+|.. .++++.+..
T Consensus 215 RVVLNKADqV---dtqqLmRVy 233 (532)
T KOG1954|consen 215 RVVLNKADQV---DTQQLMRVY 233 (532)
T ss_pred EEEecccccc---CHHHHHHHH
Confidence 6789999974 445555443
No 320
>KOG0705|consensus
Probab=98.65 E-value=4.6e-08 Score=80.29 Aligned_cols=131 Identities=15% Similarity=0.250 Sum_probs=100.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
.-+.+|+-++|..++|||+++.+++. .+.....+.+.|.+|. ....|...+|++||
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavIf 101 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVVF 101 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCC-----chhhhhhhccceEE
Confidence 45789999999999999999999987 3344455566676662 23456778999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC----CCCCCCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ----DIEGALTPEDIKNVS---------EKATKVKLNKQSKF 162 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~----Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f 162 (171)
||...+.++|+.+......+........+|.++++++- |.+......+.+..+ ++++.+|.|+..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 99999999999998887777665555679999998873 334444444444443 67999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 182 ~~~~~k~i 189 (749)
T KOG0705|consen 182 QEVAQKIV 189 (749)
T ss_pred HHHHHHHH
Confidence 99988764
No 321
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=6.8e-07 Score=71.84 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=88.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
-|...|.-.-|||||++.+.+ .+.++..+.+.|+||++++-...-.-....|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 467788999999999999998 3445568899999999988665555567899999999
Q ss_pred eCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------------HhhhccCCCHHHHH
Q psy11510 98 DSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------------EKATKVKLNKQSKF 162 (171)
Q Consensus 98 d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------------~~sa~~~~~v~~~f 162 (171)
|.++ +++.+.+. ..+++ .-.-.++|+||+|..+....++..+.+ .+|+++|.||+++-
T Consensus 82 ~~deGl~~qtgEhL~--iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 82 AADEGLMAQTGEHLL--ILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred eCccCcchhhHHHHH--HHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 9965 44444332 11221 234468999999998743322222221 45899999999999
Q ss_pred HHHHHHH
Q psy11510 163 QVLLNEV 169 (171)
Q Consensus 163 ~~l~~~i 169 (171)
+.+.+..
T Consensus 155 ~~l~~L~ 161 (447)
T COG3276 155 NELIDLL 161 (447)
T ss_pred HHHHHhh
Confidence 8887653
No 322
>KOG0461|consensus
Probab=98.61 E-value=5.6e-07 Score=70.53 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=81.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.+-.+++-++|.-.+|||||.+++.. .......+.+.|.||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 44569999999999999999999987 4556788999999998655
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCC-CCHHHHHHH-------H--
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCAR-ELHELLQEERLAGATLLVFANKQDIEGA-LTPEDIKNV-------S-- 148 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~-------~-- 148 (171)
-...-.-..-.|..++|+|+...-.=+..+. .+.+++ ....++|.||.|.-.+ .....+.+. +
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 4433344455788899999876422222211 122222 2345666777765432 111112222 1
Q ss_pred ----------HhhhccC----CCHHHHHHHHHHHHh
Q psy11510 149 ----------EKATKVK----LNKQSKFQVLLNEVS 170 (171)
Q Consensus 149 ----------~~sa~~~----~~v~~~f~~l~~~i~ 170 (171)
+.||+.| +.+.++.+.+-.+|+
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 3478888 666666666655553
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.60 E-value=1.6e-07 Score=68.49 Aligned_cols=84 Identities=14% Similarity=0.010 Sum_probs=58.8
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHH---------
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNV--------- 147 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~--------- 147 (171)
.++.++..+++++|++++|+|++++..- |...+... ..++|+++|+||+|+.. ....+.+..+
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 3577888999999999999999875421 11222111 24689999999999964 3333322222
Q ss_pred -------HHhhhccCCCHHHHHHHHHHH
Q psy11510 148 -------SEKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 148 -------~~~sa~~~~~v~~~f~~l~~~ 168 (171)
...||++|.|++++++.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~ 123 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKL 123 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 135999999999999998764
No 324
>PTZ00258 GTP-binding protein; Provisional
Probab=98.58 E-value=4.4e-07 Score=73.02 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccC-----------------ceEEEEEecCCccc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTF-----------------RFKLNIWDVGGQKS 78 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~-----------------~~~~~i~d~~g~~~ 78 (171)
....++|.++|.+|||||||++.+.+ +..+ ..++.+.|+||-..
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 35678999999999999999999987 0001 23489999999432
Q ss_pred h----hHHHH---HhhhCCCEEEEEEeCC
Q psy11510 79 L----RSYWR---NYFESTDGLIWVVDSA 100 (171)
Q Consensus 79 ~----~~~~~---~~~~~~~~ii~v~d~~ 100 (171)
- ..+.. ..++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 11222 3357899999999974
No 325
>KOG3887|consensus
Probab=98.56 E-value=6.4e-07 Score=67.06 Aligned_cols=96 Identities=23% Similarity=0.290 Sum_probs=69.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH---HHHHhhhCCCEEEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS---YWRNYFESTDGLIWV 96 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~ii~v 96 (171)
+|+++|...+||||+-+-... +...-+.+++||.|||-.+-. -....++.+.+++||
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv 108 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV 108 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence 499999999999999877665 333567899999999866533 346678999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCC
Q psy11510 97 VDSADKRRLEDCARELHELLQ-EERLAGATLLVFANKQDIE 136 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~ 136 (171)
+|+.+. ..+.+.+....+-+ ....+++.+=+++.|.|-.
T Consensus 109 IDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 109 IDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred EechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 997653 33444333222221 2334788899999999964
No 326
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.3e-07 Score=67.93 Aligned_cols=95 Identities=21% Similarity=0.209 Sum_probs=69.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.+++++|..+|.-+-|||||...+.. ..-.+..+...|.||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 67899999999999999999998876 2334456678899999888
Q ss_pred hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
-...-.-.-..|+.|+|+.+++ |++-+.+. +.++ -++| ++++.||+|+.+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larq---vGvp~ivvflnK~Dmvd 142 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVD 142 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhh---cCCcEEEEEEecccccC
Confidence 5533333456899999999988 44444431 1111 2665 666789999976
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.45 E-value=3.7e-07 Score=64.41 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=54.9
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhh
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKA 151 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~s 151 (171)
+.+++...+++|++++|+|++++...... . +...+. ..++|+++|+||+|+.+....+..... ...|
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 34566677889999999999876433221 1 222222 246899999999998542111111111 1348
Q ss_pred hccCCCHHHHHHHHHHH
Q psy11510 152 TKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~~ 168 (171)
|+++.|++++++.+.+.
T Consensus 78 a~~~~gi~~L~~~l~~~ 94 (156)
T cd01859 78 AKERLGTKILRRTIKEL 94 (156)
T ss_pred ccccccHHHHHHHHHHH
Confidence 99999999999988764
No 328
>KOG0447|consensus
Probab=98.44 E-value=3.3e-06 Score=69.87 Aligned_cols=110 Identities=14% Similarity=0.286 Sum_probs=80.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------- 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------- 60 (171)
-..-+|+++|+.++||||.+..+..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 3557899999999999999998876
Q ss_pred --------------------cccCc-eEEEEEecCC-------------ccchhHHHHHhhhCCCEEEEEEeCCChhhHH
Q psy11510 61 --------------------IMTFR-FKLNIWDVGG-------------QKSLRSYWRNYFESTDGLIWVVDSADKRRLE 106 (171)
Q Consensus 61 --------------------~~~~~-~~~~i~d~~g-------------~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 106 (171)
+.+++ -.+.+.|.|| .+....+...|..++++||+|+--.+.+.-.
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 33443 3577889999 2344557788899999999998644433333
Q ss_pred HHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH
Q psy11510 107 DCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS 148 (171)
Q Consensus 107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~ 148 (171)
.. .-++..+....+...|+|.+|.|+.+ -.+++.+++.+
T Consensus 466 Sn---VTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 466 SI---VTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQII 506 (980)
T ss_pred hh---HHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHH
Confidence 33 23444455567899999999999987 35677777766
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.43 E-value=3.2e-06 Score=66.65 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=63.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------cccCceEEEEEecCCccc------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------IMTFRFKLNIWDVGGQKS------ 78 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------~~~~~~~~~i~d~~g~~~------ 78 (171)
.-.+.|+++|+.|.|||||++.+.+ -++..+.+++.||||=.+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4679999999999999999999998 233457789999999221
Q ss_pred -hhH-------HHHHhhh--------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 79 -LRS-------YWRNYFE--------------STDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 79 -~~~-------~~~~~~~--------------~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
+.+ ....|+. .+|+++|.+..+.- .+..+. +.++.+. ..+-+|-|+-|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 111 1222221 47999998886542 233332 3345552 34677888889997
Q ss_pred C
Q psy11510 136 E 136 (171)
Q Consensus 136 ~ 136 (171)
.
T Consensus 175 l 175 (373)
T COG5019 175 L 175 (373)
T ss_pred C
Confidence 4
No 330
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.43 E-value=2e-06 Score=68.61 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=45.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc---------------------cccC---------------ceEEEEEecCCccch---
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM---------------------IMTF---------------RFKLNIWDVGGQKSL--- 79 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~---------------~~~~~i~d~~g~~~~--- 79 (171)
++|.++|.+|||||||++.+.+ +... ...+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998 0000 124899999994321
Q ss_pred -hHHHHH---hhhCCCEEEEEEeCC
Q psy11510 80 -RSYWRN---YFESTDGLIWVVDSA 100 (171)
Q Consensus 80 -~~~~~~---~~~~~~~ii~v~d~~ 100 (171)
..+... .++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122222 356899999999984
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.40 E-value=8.1e-07 Score=68.48 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=42.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc-------------------cccC-----------------ceEEEEEecCCccch----h
Q psy11510 41 VSLLRNKNGGETLILKKKKM-------------------IMTF-----------------RFKLNIWDVGGQKSL----R 80 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~-------------------~~~~-----------------~~~~~i~d~~g~~~~----~ 80 (171)
|.++|.++||||||++.+.+ .... ...+.+.|+||--.- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57899999999999999998 0001 124899999994321 1
Q ss_pred HHHHH---hhhCCCEEEEEEeCC
Q psy11510 81 SYWRN---YFESTDGLIWVVDSA 100 (171)
Q Consensus 81 ~~~~~---~~~~~~~ii~v~d~~ 100 (171)
.+... .++++|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22222 356799999999874
No 332
>PRK12289 GTPase RsgA; Reviewed
Probab=98.36 E-value=9e-07 Score=70.55 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=57.0
Q ss_pred HHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------Hhhhc
Q psy11510 83 WRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATK 153 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~ 153 (171)
....+.++|.+++|+|+.++. ....+.+|+.... ..++|+++|+||+|+.+....+...+.+ .+||+
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~ 158 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE 158 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence 344578999999999998765 4445666666552 2579999999999996421112222222 34999
Q ss_pred cCCCHHHHHHHHHH
Q psy11510 154 VKLNKQSKFQVLLN 167 (171)
Q Consensus 154 ~~~~v~~~f~~l~~ 167 (171)
++.|++++++.+..
T Consensus 159 tg~GI~eL~~~L~~ 172 (352)
T PRK12289 159 TGIGLEALLEQLRN 172 (352)
T ss_pred CCCCHHHHhhhhcc
Confidence 99999999988764
No 333
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.35 E-value=4.4e-06 Score=59.34 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
++++|..|+||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~ 22 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILT 22 (158)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 67999999999999998875
No 334
>KOG2655|consensus
Probab=98.33 E-value=6.7e-06 Score=65.17 Aligned_cols=95 Identities=13% Similarity=0.210 Sum_probs=62.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc----------------------------c--ccCceEEEEEecCCcc-------ch
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM----------------------------I--MTFRFKLNIWDVGGQK-------SL 79 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~----------------------------~--~~~~~~~~i~d~~g~~-------~~ 79 (171)
-.+.+.++|++|.|||||++.+.. + ++-.+.+++.||||-. .+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 459999999999999999999887 2 3345778899999922 11
Q ss_pred hH-------HHHHhhh-------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 80 RS-------YWRNYFE-------------STDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 80 ~~-------~~~~~~~-------------~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
++ ....|+. .+|+++|.+..+.. .+..+. +.++.+. ..+.+|-|+-|+|...
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLT 172 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCC
Confidence 11 2223321 57999998886543 222222 3344442 3577888888999743
No 335
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=7.6e-06 Score=57.75 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=70.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecC-Ccc-------------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVG-GQK------------------- 77 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~-g~~------------------- 77 (171)
+..+||.+.|++||||||++.++.. -.+..+-+.+.|+. |.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 4578999999999999999999997 23445667777776 311
Q ss_pred --chh----HHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhh
Q psy11510 78 --SLR----SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKA 151 (171)
Q Consensus 78 --~~~----~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~s 151 (171)
.+. ...+..++.+|.+|. |--.+ ++.....+.+.+++....+.|++.+..+.+... -.++++..-..-
T Consensus 83 v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~~~~v~ 156 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKKLGGVY 156 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhhcCCEE
Confidence 111 111222345677665 54333 333223333333443446889998888776522 111222222222
Q ss_pred h-ccCCCHHHHHHHHHH
Q psy11510 152 T-KVKLNKQSKFQVLLN 167 (171)
Q Consensus 152 a-~~~~~v~~~f~~l~~ 167 (171)
. .+.+|-+.++..+..
T Consensus 157 v~lt~~NR~~i~~~Il~ 173 (179)
T COG1618 157 VFLTPENRNRILNEILS 173 (179)
T ss_pred EEEccchhhHHHHHHHH
Confidence 2 455555566655544
No 336
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.31 E-value=1.7e-06 Score=69.32 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred ccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH------
Q psy11510 76 QKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS------ 148 (171)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~------ 148 (171)
.++|..+...+.+.++++++|+|+.+.. ..|...+.+. ..+.|+++|+||+|+.. ....+++.++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 5678888888889999999999987643 1122333222 13679999999999965 34444444332
Q ss_pred ---------HhhhccCCCHHHHHHHHHH
Q psy11510 149 ---------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 149 ---------~~sa~~~~~v~~~f~~l~~ 167 (171)
.+||++|.|++++|+.+.+
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 3599999999999998865
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.31 E-value=1.4e-06 Score=67.65 Aligned_cols=79 Identities=16% Similarity=0.016 Sum_probs=58.3
Q ss_pred HhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccC
Q psy11510 85 NYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVK 155 (171)
Q Consensus 85 ~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~ 155 (171)
..+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+........... ..||+++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 3477899999999999987 78888888776633 478999999999996542111111111 4599999
Q ss_pred CCHHHHHHHHHH
Q psy11510 156 LNKQSKFQVLLN 167 (171)
Q Consensus 156 ~~v~~~f~~l~~ 167 (171)
.|+++++..+..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999887653
No 338
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.29 E-value=1e-05 Score=59.45 Aligned_cols=93 Identities=18% Similarity=0.236 Sum_probs=58.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------ccc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------------------------------------------IMT 63 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~~~ 63 (171)
..|+++|+.||||||.+-++.. ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4689999999999999988876 111
Q ss_pred CceEEEEEecCCccchhH----HHHHhhh--CCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 64 FRFKLNIWDVGGQKSLRS----YWRNYFE--STDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~----~~~~~~~--~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
++..+.++||+|...... ....+.+ ..+-+++|.+++.... ++.+...+..+ +.. -++.+|.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------GID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------STC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------cCc-eEEEEeecCC
Confidence 335688999999654432 1222222 6789999999887543 33332222211 222 3558999986
Q ss_pred CCC
Q psy11510 137 GAL 139 (171)
Q Consensus 137 ~~~ 139 (171)
...
T Consensus 154 ~~~ 156 (196)
T PF00448_consen 154 ARL 156 (196)
T ss_dssp STT
T ss_pred CCc
Confidence 643
No 339
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.26 E-value=8.8e-06 Score=74.12 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=63.6
Q ss_pred EEEEeCCCCcHHHHHHHHhc---c------------ccC-c------eEEEEEecCCcc--------chhHHHHHhhh--
Q psy11510 41 VSLLRNKNGGETLILKKKKM---I------------MTF-R------FKLNIWDVGGQK--------SLRSYWRNYFE-- 88 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~---~------------~~~-~------~~~~i~d~~g~~--------~~~~~~~~~~~-- 88 (171)
.++||++|+||||++.+.-. . ... + -.-.++||+|.- .....|..++.
T Consensus 114 YlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L 193 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLL 193 (1169)
T ss_pred EEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHHH
Confidence 68999999999999998733 0 000 0 134578999922 23446777653
Q ss_pred -------CCCEEEEEEeCCCh-----hhH----HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 89 -------STDGLIWVVDSADK-----RRL----EDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 89 -------~~~~ii~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
..++||+++|+.+- ... ..+...+.++.+.. .-..||.++.||+|+..
T Consensus 194 ~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 194 RKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 48999999997552 111 23444455554332 24899999999999863
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.25 E-value=4.1e-06 Score=66.73 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=57.8
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH---HHHH--------HhhhccCC
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI---KNVS--------EKATKVKL 156 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~--------~~sa~~~~ 156 (171)
.++|.+++|++.....++..+..|+.... ..++|+++|+||+|+.+....+.. .+.+ ..||+++.
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 46999999999988888999999877552 257899999999999653221112 1221 44999999
Q ss_pred CHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNE 168 (171)
Q Consensus 157 ~v~~~f~~l~~~ 168 (171)
|++++++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.24 E-value=1.6e-06 Score=60.24 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
+++++|.+|+|||||++++.+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999997
No 342
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.19 E-value=6.7e-06 Score=65.40 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=73.5
Q ss_pred CCCCCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------
Q psy11510 32 RPQVSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------- 60 (171)
Q Consensus 32 ~~~~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------- 60 (171)
....+.++.+...|.-+.|||||+-.+..
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 34478899999999999999999876665
Q ss_pred -----cccCceEEEEEecCCccchhH-HHHHhh-hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 61 -----IMTFRFKLNIWDVGGQKSLRS-YWRNYF-ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 61 -----~~~~~~~~~i~d~~g~~~~~~-~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
+...+.-+.+.|+.|++.+-. .....+ ++.|-.++++-+++..+-- .++.+--.+ .-+.|++++.+|+
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~----a~~lPviVvvTK~ 265 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIAL----AMELPVIVVVTKI 265 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhh----hhcCCEEEEEEec
Confidence 344556789999999998744 334433 5789999999988864321 112222221 2479999999999
Q ss_pred CCCCC
Q psy11510 134 DIEGA 138 (171)
Q Consensus 134 Dl~~~ 138 (171)
|+.+.
T Consensus 266 D~~~d 270 (527)
T COG5258 266 DMVPD 270 (527)
T ss_pred ccCcH
Confidence 99763
No 343
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=2.7e-06 Score=66.47 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=53.7
Q ss_pred hhCCCEEEEEEeCCChhhHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHH--------HhhhccCC
Q psy11510 87 FESTDGLIWVVDSADKRRLED-CARELHELLQEERLAGATLLVFANKQDIEGAL-TPEDIKNVS--------EKATKVKL 156 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~--------~~sa~~~~ 156 (171)
..++|.+++|+|++++.+... +.+|+..+. . .++|+++|+||+|+.+.. ..++..... ..||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~-~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-A---NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 578999999999988765444 456665553 2 579999999999996321 111222222 45999999
Q ss_pred CHHHHHHHHH
Q psy11510 157 NKQSKFQVLL 166 (171)
Q Consensus 157 ~v~~~f~~l~ 166 (171)
|++++++.+.
T Consensus 154 gi~~L~~~l~ 163 (298)
T PRK00098 154 GLDELKPLLA 163 (298)
T ss_pred cHHHHHhhcc
Confidence 9999998764
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.18 E-value=7e-06 Score=58.01 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=49.3
Q ss_pred hhCCCEEEEEEeCCChhh--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------------Hhhh
Q psy11510 87 FESTDGLIWVVDSADKRR--LEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------------EKAT 152 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------------~~sa 152 (171)
++++|.+++|+|++++.. ...+.+ .+... ..++|+++|.||+|+.+. +++..+. ..||
T Consensus 6 l~~aD~il~VvD~~~p~~~~~~~i~~----~l~~~-~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~~~~~~iSa 77 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTRCKHVEE----YLKKE-KPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYPTIAFHASI 77 (157)
T ss_pred hhhCCEEEEEEECCCCccccCHHHHH----HHHhc-cCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCcEEEEEeec
Confidence 678999999999988632 233333 32221 246899999999999542 2222222 2378
Q ss_pred ccCCCHHHHHHHHHH
Q psy11510 153 KVKLNKQSKFQVLLN 167 (171)
Q Consensus 153 ~~~~~v~~~f~~l~~ 167 (171)
+.+.|++++++.+.+
T Consensus 78 ~~~~~~~~L~~~l~~ 92 (157)
T cd01858 78 NNPFGKGSLIQLLRQ 92 (157)
T ss_pred cccccHHHHHHHHHH
Confidence 889999998888754
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.18 E-value=2.7e-06 Score=60.12 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.++|+++|.+|+|||||++++.+
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhc
Confidence 3568899999999999999999987
No 346
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.17 E-value=2.2e-05 Score=64.03 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=57.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------cc-c------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------------------------IM-T------------ 63 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------------------------~~-~------------ 63 (171)
.+..-|+++|+.||||||.+.++.. .. .
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 3467899999999999999999964 00 0
Q ss_pred ---CceEEEEEecCCccchhH-HHH---Hh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510 64 ---FRFKLNIWDVGGQKSLRS-YWR---NY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQD 134 (171)
Q Consensus 64 ---~~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 134 (171)
....+.++||+|...... +.. .+ ..+++.++||+|++..+.-....+.+.+. -.+--+|.||.|
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD 250 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLD 250 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECcc
Confidence 245778999999654322 111 11 22578899999987654333322222221 124445577777
Q ss_pred C
Q psy11510 135 I 135 (171)
Q Consensus 135 l 135 (171)
.
T Consensus 251 ~ 251 (429)
T TIGR01425 251 G 251 (429)
T ss_pred C
Confidence 5
No 347
>PRK14974 cell division protein FtsY; Provisional
Probab=98.16 E-value=2.2e-05 Score=62.29 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=58.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------c
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------I 61 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~ 61 (171)
+...|+++|++|+||||.+.++.. .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998887765 0
Q ss_pred ccCceEEEEEecCCccchhH-HH---HHhh--hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 62 MTFRFKLNIWDVGGQKSLRS-YW---RNYF--ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 62 ~~~~~~~~i~d~~g~~~~~~-~~---~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
...+..+.+.||+|...... +. ..+. -++|.+++|.|+...+..-+....+... -+ +--++.||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~------~~-~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA------VG-IDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc------CC-CCEEEEeeecC
Confidence 11234578999999653221 11 2222 2578999999987654222111112211 12 34466899998
Q ss_pred CCCC
Q psy11510 136 EGAL 139 (171)
Q Consensus 136 ~~~~ 139 (171)
....
T Consensus 292 ~~~~ 295 (336)
T PRK14974 292 DAKG 295 (336)
T ss_pred CCCc
Confidence 6643
No 348
>KOG0467|consensus
Probab=98.16 E-value=9.4e-06 Score=69.18 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=76.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
....-++.++-.-..|||||...+.- .-.++..++++|+||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 45677899999999999999999986 3347788999999999999
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
.+.-.+..+=+|+.+.++|+...-.-+.. ..+++.+ ..+..+++|+||+|..
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~----~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAW----IEGLKPILVINKIDRL 137 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHH----HccCceEEEEehhhhH
Confidence 99888888889999999999875433322 2233333 3467888899999953
No 349
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.14 E-value=3e-06 Score=61.01 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
...++++++|.+|+|||||++++.+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~ 139 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKR 139 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhC
Confidence 3458999999999999999999998
No 350
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.2e-05 Score=65.34 Aligned_cols=96 Identities=10% Similarity=0.160 Sum_probs=66.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
..+++-++++|++|+|||||++.+.. +.++.-.+.+.+.| .+...+.. ..+-+|.+++++|
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlLlId 142 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLLLID 142 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEEEec
Confidence 55778899999999999999999987 44555667788877 23333332 3567999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCC
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGA 138 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~ 138 (171)
..=.-.++.+ + +..++..+ +.| ++.|.++.|+...
T Consensus 143 gnfGfEMETm-E-FLnil~~H---GmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 143 GNFGFEMETM-E-FLNILISH---GMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred cccCceehHH-H-HHHHHhhc---CCCceEEEEeecccccC
Confidence 7654333332 2 23444443 444 7788999999773
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.13 E-value=5.9e-06 Score=59.28 Aligned_cols=84 Identities=11% Similarity=-0.003 Sum_probs=54.1
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------H
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------E 149 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~ 149 (171)
+........+.++|.+++|+|++++..-.. ..... . ..+.|+++|.||+|+.+.....+..++. .
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~-~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEK-I-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHh-H-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 334444566789999999999987643211 11111 1 1357999999999996431111221221 3
Q ss_pred hhhccCCCHHHHHHHHHHH
Q psy11510 150 KATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 150 ~sa~~~~~v~~~f~~l~~~ 168 (171)
.||+++.|++++.+.+.+.
T Consensus 81 iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred EECCCcccHHHHHHHHHHH
Confidence 5999999999999888765
No 352
>PRK13695 putative NTPase; Provisional
Probab=98.13 E-value=6.6e-06 Score=59.16 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
+||++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.12 E-value=3.6e-05 Score=59.43 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc------------------------------------c------------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM------------------------------------I------------------ 61 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~------------------------------------~------------------ 61 (171)
.+...|+++|++|+||||.+.++.. .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 3456788899999999999988876 0
Q ss_pred -ccCceEEEEEecCCccchhHHH----HH---hh-----hCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEE
Q psy11510 62 -MTFRFKLNIWDVGGQKSLRSYW----RN---YF-----ESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLL 127 (171)
Q Consensus 62 -~~~~~~~~i~d~~g~~~~~~~~----~~---~~-----~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~i 127 (171)
...+..+.+.||+|........ .. .. ..+|.+++|+|++... .++.. ....+.. .+--
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g 221 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTG 221 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCE
Confidence 0133567889999965432221 11 11 1389999999987542 33333 2222111 2456
Q ss_pred EEEeCCCCCCC
Q psy11510 128 VFANKQDIEGA 138 (171)
Q Consensus 128 vv~nK~Dl~~~ 138 (171)
+|.||.|....
T Consensus 222 ~IlTKlDe~~~ 232 (272)
T TIGR00064 222 IILTKLDGTAK 232 (272)
T ss_pred EEEEccCCCCC
Confidence 77999998664
No 354
>KOG1547|consensus
Probab=98.11 E-value=1.7e-05 Score=59.57 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=59.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------------------cccC--ceEEEEEecCCccch-----
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------------IMTF--RFKLNIWDVGGQKSL----- 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------------~~~~--~~~~~i~d~~g~~~~----- 79 (171)
..-.++|.++|.+|.|||||++.+.. +..+ ..+++++||||=.+.
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 34579999999999999999999987 3333 467789999992211
Q ss_pred ---------hHHHHHhhh--------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 80 ---------RSYWRNYFE--------------STDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 80 ---------~~~~~~~~~--------------~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
...++.|++ .+|+++|.+..+.- ++..+. +.++.+-+ -+-++-|+-|+|-
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDt 196 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADT 196 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccc
Confidence 111223322 46888887776542 333332 22333321 2456677788885
Q ss_pred C
Q psy11510 136 E 136 (171)
Q Consensus 136 ~ 136 (171)
.
T Consensus 197 l 197 (336)
T KOG1547|consen 197 L 197 (336)
T ss_pred c
Confidence 3
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.10 E-value=5.3e-05 Score=54.31 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=55.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------cccC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-------------------------------------------------------IMTF 64 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-------------------------------------------------------~~~~ 64 (171)
-++++|++|+||||+...+.. ....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 478999999999999888775 0122
Q ss_pred ceEEEEEecCCccchhH----HHHHhh--hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRS----YWRNYF--ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~----~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+..+.+.|++|...+.. ....+. ...+.+++|+|...... ..+......+.. + ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 34567789988642211 111112 24899999999865432 223333443221 2 3556679999866
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.08 E-value=3.8e-05 Score=60.54 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.--++++|+.|+||||++..+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3467889999999999999999987
No 357
>KOG0464|consensus
Probab=98.08 E-value=1.3e-06 Score=70.12 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=85.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|-++..-.+||||...|++. ++.++..++++||||+-
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 34567889999999999999999987 67788999999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---CCHHHHHHHH
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---LTPEDIKNVS 148 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~ 148 (171)
+|+..-+..++--|+++-|||.+-...-+.+ .++.+....++|-+.++||.|...+ ...+.+++.+
T Consensus 114 df~leverclrvldgavav~dasagve~qtl-----tvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl 182 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTL-----TVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKL 182 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCccccee-----eeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 9998888888889999999998875433333 3344555578999999999998652 3344455544
No 358
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=4.8e-05 Score=61.11 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.-.++++|+.|+||||++.++..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999999875
No 359
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.5e-05 Score=63.19 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=46.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------------------cc-c---CceEEEEEecCCccc--
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------------------IM-T---FRFKLNIWDVGGQKS-- 78 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------------------~~-~---~~~~~~i~d~~g~~~-- 78 (171)
.+++-++|.+|||||||.+.+.. .. . ..+.+.++|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36899999999999999999998 11 1 245789999988322
Q ss_pred --hhHHHH---HhhhCCCEEEEEEeCC
Q psy11510 79 --LRSYWR---NYFESTDGLIWVVDSA 100 (171)
Q Consensus 79 --~~~~~~---~~~~~~~~ii~v~d~~ 100 (171)
-+-+-. ..++++|+++.|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 222222 3367899999999975
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.05 E-value=7e-06 Score=57.85 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.....+++++|.+|+||||+++++.+
T Consensus 98 ~~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 98 DGKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34568899999999999999999997
No 361
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.01 E-value=9.1e-06 Score=58.31 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=22.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
...++++++|.+|+|||||++++.+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3457999999999999999999997
No 362
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.98 E-value=6.7e-05 Score=52.70 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
+.++|..|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999887
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.97 E-value=1e-05 Score=62.58 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=31.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~ 76 (171)
.+.++++++|.+|+|||||++++.+ +.. .-.+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-CCCEEEEECCCc
Confidence 3568999999999999999999987 111 114689999996
No 364
>KOG1486|consensus
Probab=97.97 E-value=5e-05 Score=57.43 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=57.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHH-------HHhhhC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYW-------RNYFES 89 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~-------~~~~~~ 89 (171)
.-.-+|+++|-+++|||||+..+.. +.+.+..+++.|.||.-.-.+.- -+..+-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 3467999999999999999999998 56677888999999942221111 123456
Q ss_pred CCEEEEEEeCCChhhHH-HHHHHHHHH
Q psy11510 90 TDGLIWVVDSADKRRLE-DCARELHEL 115 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~-~~~~~~~~i 115 (171)
+|.+++|.|++..+--. -++..+..+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 99999999998866544 344455554
No 365
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.96 E-value=3.7e-05 Score=55.58 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=56.0
Q ss_pred EEEEeCCCCcHHHHHHHHh-c------------------------------------------------------cccC-
Q psy11510 41 VSLLRNKNGGETLILKKKK-M------------------------------------------------------IMTF- 64 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~-~------------------------------------------------------~~~~- 64 (171)
+++.|--|||||||++++. . ....
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 6889999999999999999 3 1222
Q ss_pred -ceEEEEEecCCccchhHH--H-HHh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 65 -RFKLNIWDVGGQKSLRSY--W-RNY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 65 -~~~~~i~d~~g~~~~~~~--~-~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
....-+.+++|......+ . +.+ .-..+.++.|+|+..-.........+...+.. .=+++.||+|+.+
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVS 155 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHH
T ss_pred CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCC
Confidence 344566788885544443 1 111 12479999999997643333333333333332 3357799999866
No 366
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.95 E-value=1.2e-05 Score=62.55 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------c--ccCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------I--MTFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------~--~~~~~~~~i~d~~g~ 76 (171)
.+.++++++|.+|||||||++++.+ . -..+-.+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence 4568999999999999999999988 0 001124679999995
No 367
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.95 E-value=2.6e-05 Score=54.17 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=34.8
Q ss_pred HhhhCCCEEEEEEeCCChhhHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 85 NYFESTDGLIWVVDSADKRRLE--DCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 85 ~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
..+.++|++++|+|+.++.+.. .+.+++... ..++|+++|+||+|+.+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCC
Confidence 3478899999999998876543 343433322 14789999999999854
No 368
>KOG1491|consensus
Probab=97.94 E-value=3.5e-05 Score=60.42 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=49.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------cccCceEEEEEecCCccc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------IMTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------~~~~~~~~~i~d~~g~~~ 78 (171)
..+.+++-++|.++||||||++.+.. -...+..++++|++|.-+
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 45789999999999999999999998 122346789999998432
Q ss_pred hhH----H---HHHhhhCCCEEEEEEeCCC
Q psy11510 79 LRS----Y---WRNYFESTDGLIWVVDSAD 101 (171)
Q Consensus 79 ~~~----~---~~~~~~~~~~ii~v~d~~~ 101 (171)
-.+ + .-+.++.+|+++-|+++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 222 2 2334678999999998643
No 369
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.91 E-value=1.7e-05 Score=55.99 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=23.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....+++++|.+|+||||+++.+.+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHc
Confidence 4568899999999999999999998
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.90 E-value=4.3e-05 Score=53.86 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=47.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHH-HHHhccccCCCeEEEEEeCCCCCCCCCHHH-HHHHH--------HhhhccCCCHHH
Q psy11510 91 DGLIWVVDSADKRRLEDCARELH-ELLQEERLAGATLLVFANKQDIEGALTPED-IKNVS--------EKATKVKLNKQS 160 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~--------~~sa~~~~~v~~ 160 (171)
|.+++|+|+.++.+... .++. ..+. ..++|+++|+||+|+.+.....+ +..+. ..||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 68999999988765432 1222 2222 25799999999999954211111 11111 348999999999
Q ss_pred HHHHHHHH
Q psy11510 161 KFQVLLNE 168 (171)
Q Consensus 161 ~f~~l~~~ 168 (171)
+.+.+.+.
T Consensus 76 L~~~i~~~ 83 (155)
T cd01849 76 KESAFTKQ 83 (155)
T ss_pred HHHHHHHH
Confidence 99987653
No 371
>KOG1534|consensus
Probab=97.89 E-value=4.5e-05 Score=56.21 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=67.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------------
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------------------------------------------- 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------------------------------------------- 60 (171)
++-++++|+.|+||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 56789999999999999999887
Q ss_pred ----------cccCceEEEEEecCCccch---hHHHHHhhh-----C-CCEEEEEEeCCC-hhhHHHHHHHHHHHHhccc
Q psy11510 61 ----------IMTFRFKLNIWDVGGQKSL---RSYWRNYFE-----S-TDGLIWVVDSAD-KRRLEDCARELHELLQEER 120 (171)
Q Consensus 61 ----------~~~~~~~~~i~d~~g~~~~---~~~~~~~~~-----~-~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~ 120 (171)
...-.-.+-++|.|||-.. .+..+...+ + -=+++++.|+.= .++.+.+.--+..+.. ..
T Consensus 83 ~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA-Mi 161 (273)
T KOG1534|consen 83 LENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA-MI 161 (273)
T ss_pred HHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH-HH
Confidence 1112334678999997532 223333322 1 124456666422 1122222221222211 11
Q ss_pred cCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 121 LAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 121 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
.-.+|.|-|.+|.|+....+.+++++++
T Consensus 162 ~lE~P~INvlsKMDLlk~~~k~~l~~Fl 189 (273)
T KOG1534|consen 162 SLEVPHINVLSKMDLLKDKNKKELERFL 189 (273)
T ss_pred HhcCcchhhhhHHHHhhhhhHHHHHHhc
Confidence 1368999999999998878888888887
No 372
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.89 E-value=3.8e-05 Score=44.70 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=28.5
Q ss_pred CCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510 89 STDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQD 134 (171)
Q Consensus 89 ~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 134 (171)
-.++++|++|.+... +.++-...+.++.. ..+++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 478999999998844 56666677777743 346899999999998
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.89 E-value=5.5e-06 Score=58.86 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.++++|++|||||||+|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6789999999999999999998
No 374
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=8.2e-05 Score=60.63 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|+.|+||||++.++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999986653
No 375
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.87 E-value=1.5e-05 Score=58.13 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+..+++++|.+|+|||||++.+.+
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 376
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00033 Score=56.67 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|+.||||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999975
No 377
>KOG2486|consensus
Probab=97.87 E-value=3.2e-05 Score=59.15 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=79.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------ccc--CceEEEEEecCC----------ccchhHHHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------IMT--FRFKLNIWDVGG----------QKSLRSYWRN 85 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~~~--~~~~~~i~d~~g----------~~~~~~~~~~ 85 (171)
..++..++++|.+++|||+|++-+.. ++. -+-.+.+.|.|| ...+..+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 45679999999999999999999988 121 223456779999 2344446666
Q ss_pred hhhCC---CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC------CCHHHHHH----------
Q psy11510 86 YFEST---DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA------LTPEDIKN---------- 146 (171)
Q Consensus 86 ~~~~~---~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~---------- 146 (171)
|+.+- -.+++++|++.+ ++.......+.+.+ .++|..+|.||||.... .+...+..
T Consensus 213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence 66543 233445666543 22222222233333 58999999999997431 11111222
Q ss_pred -----HHHhhhccCCCHHHHHHHHHH
Q psy11510 147 -----VSEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 147 -----~~~~sa~~~~~v~~~f~~l~~ 167 (171)
++.+|+-++.|++++.-.+++
T Consensus 288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 288 LVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eccCCceeeecccccCceeeeeehhh
Confidence 114678888888887766654
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.85 E-value=0.00019 Score=58.75 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=19.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~ 59 (171)
.++.-++++|++|+||||.+-++.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHH
Confidence 346789999999999999955443
No 379
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.84 E-value=0.00015 Score=59.49 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...|+++|.+|+||||.+..+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3567899999999999999998876
No 380
>KOG0448|consensus
Probab=97.84 E-value=0.00016 Score=61.34 Aligned_cols=98 Identities=15% Similarity=0.274 Sum_probs=66.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
.+...||++.|..++||||+++.++.
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 56789999999999999999999998
Q ss_pred ---------cccCc------eEEEEEecCCccc---hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510 61 ---------IMTFR------FKLNIWDVGGQKS---LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA 122 (171)
Q Consensus 61 ---------~~~~~------~~~~i~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 122 (171)
+..++ --+.+.|.||... ..+-...+..++|++|||.++.+--+..+ ..++....+.
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---- 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---- 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc----
Confidence 00000 1245677888432 33344567789999999999877554433 3445555332
Q ss_pred CCeEEEEEeCCCCCC
Q psy11510 123 GATLLVFANKQDIEG 137 (171)
Q Consensus 123 ~~p~ivv~nK~Dl~~ 137 (171)
++-++++-||.|...
T Consensus 261 KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 261 KPNIFILNNKWDASA 275 (749)
T ss_pred CCcEEEEechhhhhc
Confidence 344666677889754
No 381
>KOG1143|consensus
Probab=97.84 E-value=5.1e-05 Score=60.37 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------ccc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM------------------------------------------------------IMT 63 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~------------------------------------------------------~~~ 63 (171)
.++++++|...+|||||+--+.. .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 68999999999999999876665 233
Q ss_pred CceEEEEEecCCccchhHHHHHhh--hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYF--ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT 140 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~ 140 (171)
....+.+.|.+|+.+|....-.-+ ...|..++|+++....+... ++.+.-+.. -++|.+++.+|.|+.+...
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 445678999999988865332222 24788899998877543211 111222211 3799999999999987543
No 382
>KOG0780|consensus
Probab=97.82 E-value=0.00016 Score=57.74 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=71.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
..++--|.++|..|+||||-+-++..
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 45667799999999999999888876
Q ss_pred -cccCceEEEEEecCCccch-hHHHHHh-----hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhc---------------
Q psy11510 61 -IMTFRFKLNIWDVGGQKSL-RSYWRNY-----FESTDGLIWVVDSADKRRLEDCARELHELLQE--------------- 118 (171)
Q Consensus 61 -~~~~~~~~~i~d~~g~~~~-~~~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~--------------- 118 (171)
....+..+.|.||+|...- .++.+.. .-++|-+|||.|++-.+.-+....-+++...-
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGG 257 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGG 257 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCC
Confidence 4556788899999995322 1222221 22689999999999877766555545543321
Q ss_pred -----cccCCCeEEEEEeC--CCCCCCCCH
Q psy11510 119 -----ERLAGATLLVFANK--QDIEGALTP 141 (171)
Q Consensus 119 -----~~~~~~p~ivv~nK--~Dl~~~~~~ 141 (171)
....+.|++++|+- .|-.++.++
T Consensus 258 gAlSaVaaTksPIiFIGtGEhmdDlE~F~p 287 (483)
T KOG0780|consen 258 GALSAVAATKSPIIFIGTGEHMDDLEPFDP 287 (483)
T ss_pred ceeeehhhhCCCEEEEecCccccccCCCCh
Confidence 01136888888754 554444433
No 383
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00023 Score=57.68 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=55.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
.+++..|+++|..|+||||..-++..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 45788999999999999998888776
Q ss_pred -cccCceEEEEEecCCccchhH-HHHHh-----hhCCCEEEEEEeCCChhhHHHHHHHHHH
Q psy11510 61 -IMTFRFKLNIWDVGGQKSLRS-YWRNY-----FESTDGLIWVVDSADKRRLEDCARELHE 114 (171)
Q Consensus 61 -~~~~~~~~~i~d~~g~~~~~~-~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~~~ 114 (171)
.......+.|.||+|...... +.... .-++|-++||+|+.-.+.-......+++
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 223345688999999544332 21111 2368999999999876654444443443
No 384
>PRK10867 signal recognition particle protein; Provisional
Probab=97.81 E-value=0.00026 Score=58.08 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=19.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.++.-|+++|++|+||||.+-++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3467899999999999996666543
No 385
>KOG0460|consensus
Probab=97.81 E-value=0.00018 Score=56.65 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=64.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------cc--cCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------------------IM--TFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------------------~~--~~~~~~~i~d~~g~~~~ 79 (171)
.+++++|--||.-.-|||||-..+.. +. -..-.+.=.|.||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 67899999999999999999998887 11 11222334588998877
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCC-CeEEEEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG-ATLLVFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~Dl~~ 137 (171)
-...-.-...-|+.|+|+.++|.. +.+.++.+.-- ++. + ..+++++||.|+.+
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLA-rQV---GV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLA-RQV---GVKHIVVFINKVDLVD 184 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHH-HHc---CCceEEEEEecccccC
Confidence 543333344579999999999943 22222211111 222 3 34777899999974
No 386
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.81 E-value=3.3e-05 Score=61.04 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=32.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------c------ccCceEEEEEecCCc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------I------MTFRFKLNIWDVGGQ 76 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------~------~~~~~~~~i~d~~g~ 76 (171)
..+..++.++|.+||||||+|+++.+ . -.-.-.+.++||||-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 34568899999999999999999999 0 001122688999994
No 387
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.80 E-value=0.00025 Score=53.17 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=47.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cc---cCceEEEEEecCCccchhH------HH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IM---TFRFKLNIWDVGGQKSLRS------YW 83 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~---~~~~~~~i~d~~g~~~~~~------~~ 83 (171)
..+..-|.++|+.++|||+|+|++.+ .. ..+..+.+.||+|...... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 45678899999999999999999987 01 1346788999999543211 12
Q ss_pred HHhhhC--CCEEEEEEeCCChh
Q psy11510 84 RNYFES--TDGLIWVVDSADKR 103 (171)
Q Consensus 84 ~~~~~~--~~~ii~v~d~~~~~ 103 (171)
...+.- ++.+|+..+.+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccH
Confidence 222223 78888877765544
No 388
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.78 E-value=0.00026 Score=52.98 Aligned_cols=45 Identities=40% Similarity=0.515 Sum_probs=30.9
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCC-CeEEEEEeCCCCC
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG-ATLLVFANKQDIE 136 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~Dl~ 136 (171)
.+++|.++.|+|.+.. ++...++ +.++.++ -+ .++.+|.||.|..
T Consensus 153 ~~~vD~vivVvDpS~~-sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYK-SLRTAER-IKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHH-HHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence 4579999999998764 3433322 3444333 24 8999999999965
No 389
>PRK12288 GTPase RsgA; Reviewed
Probab=97.77 E-value=3.1e-05 Score=61.78 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-++++|.+|||||||+|++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcc
Confidence 379999999999999999997
No 390
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.77 E-value=6.8e-05 Score=57.98 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=51.6
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------Hhhhc
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATK 153 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~ 153 (171)
.....++.+|++++|+|+..+.+-+. .++...+ .+.|+++|.||+|+.+....+...+.. ..||+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~ 86 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAK 86 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECC
Confidence 34555789999999999987644322 1122232 368999999999995421111111112 24889
Q ss_pred cCCCHHHHHHHHHHH
Q psy11510 154 VKLNKQSKFQVLLNE 168 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~ 168 (171)
++.|++++.+.+.+.
T Consensus 87 ~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 87 KGKGVKKIIKAAKKL 101 (276)
T ss_pred CcccHHHHHHHHHHH
Confidence 999999988877653
No 391
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.75 E-value=0.00018 Score=56.77 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=41.0
Q ss_pred eEEEEEecCCccchhHHHHHhhh--------CCCEEEEEEeCCChhhH-HHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 66 FKLNIWDVGGQKSLRSYWRNYFE--------STDGLIWVVDSADKRRL-EDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 66 ~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
....+.++.|...-..+...++. ..++++.|+|+..-... +.......++. ..=+++.||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-------~AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-------YADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-------hCCEEEEeccccC
Confidence 33456788887665555555432 25889999998753221 11111122331 2345779999987
Q ss_pred CCCCHHHHHHHH
Q psy11510 137 GALTPEDIKNVS 148 (171)
Q Consensus 137 ~~~~~~~~~~~~ 148 (171)
.+ .+.+++.+
T Consensus 164 ~~--~~~~~~~l 173 (318)
T PRK11537 164 GE--AEKLRERL 173 (318)
T ss_pred CH--HHHHHHHH
Confidence 63 23444444
No 392
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.74 E-value=0.00015 Score=58.10 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=45.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------------c---------------ccCceEEEEEecCCccchh-
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------------I---------------MTFRFKLNIWDVGGQKSLR- 80 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------------~---------------~~~~~~~~i~d~~g~~~~~- 80 (171)
+++.++|.+++|||||++.+.+ + ......+.+.|+||.-.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998 0 0112356788999943321
Q ss_pred ------HHHHHhhhCCCEEEEEEeCC
Q psy11510 81 ------SYWRNYFESTDGLIWVVDSA 100 (171)
Q Consensus 81 ------~~~~~~~~~~~~ii~v~d~~ 100 (171)
...-..++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12334577899999999974
No 393
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.74 E-value=0.00047 Score=46.86 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-.+++.|++|+|||++++.+..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIAN 41 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999998
No 394
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.70 E-value=0.0004 Score=55.95 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=59.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------cccC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------------------------------------IMTF 64 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------------------------------------~~~~ 64 (171)
.+.-.|+++|+.||||||-+-++.. ....
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 3577899999999999998877665 2233
Q ss_pred ceEEEEEecCCccchhH----HHHHhhhCC--CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRS----YWRNYFEST--DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~----~~~~~~~~~--~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+..+.+.||.|...+.. ....++..+ .-+.+|++++... +.+.+.+... ..-+.. -++.||.|....
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f----~~~~i~-~~I~TKlDET~s 353 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF----SLFPID-GLIFTKLDETTS 353 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh----ccCCcc-eeEEEcccccCc
Confidence 44678899999665433 234444433 4456677877653 3444434443 111222 244788887654
No 395
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.69 E-value=0.0003 Score=47.66 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=49.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-cc-----cCceEEEEEecCCccchhHHH------------------------HHhh
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-IM-----TFRFKLNIWDVGGQKSLRSYW------------------------RNYF 87 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-~~-----~~~~~~~i~d~~g~~~~~~~~------------------------~~~~ 87 (171)
.--+++.|++|+|||++++++.. .. .....+-..+.+........+ ...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 34588999999999999999998 11 113333344444322111111 1223
Q ss_pred hCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510 88 ESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANK 132 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 132 (171)
......++++|-.+.- + ....+++..+.+ ..+++++++|+-
T Consensus 84 ~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 3445577788854432 2 333344455544 467888888875
No 396
>KOG0465|consensus
Probab=97.69 E-value=6.3e-05 Score=62.94 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=76.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~ 78 (171)
++.-+|-++-.-.+||||+-++++. ....+..++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4567788888899999999999987 445588999999999988
Q ss_pred hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH
Q psy11510 79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP 141 (171)
Q Consensus 79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~ 141 (171)
|.-.-+..++--|+.++|+|+...-.-+...-| +++ .--++|.+.+.||.|.-.+.+-
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~----~ry~vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQM----KRYNVPRICFINKMDRMGASPF 174 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHH----HhcCCCeEEEEehhhhcCCChH
Confidence 877666667888999999998764333222222 233 2248999999999998775443
No 397
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00029 Score=57.35 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-++++|++||||||++.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999874
No 398
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00036 Score=60.69 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.--|+++|+.||||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 34689999999999999998886
No 399
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.67 E-value=0.001 Score=42.16 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=53.9
Q ss_pred EEEEeCCCCcHHHHHHHHhc-cc--cCce----EEEEEecCCccchhHH-HHHhhhCCCEEEEEEeCCChhhHHHHHHHH
Q psy11510 41 VSLLRNKNGGETLILKKKKM-IM--TFRF----KLNIWDVGGQKSLRSY-WRNYFESTDGLIWVVDSADKRRLEDCAREL 112 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~-~~--~~~~----~~~i~d~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~ 112 (171)
+++.|..|+||||+...+.. .. +.++ .+.+.|+++....... .......+|.++++++.... +........
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-~~~~~~~~~ 80 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-AVLGARRLT 80 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECCEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-hHHHHHHHH
Confidence 67889999999999999887 11 1111 3678899886543321 14456678999999886554 343333332
Q ss_pred HHHHhccccCCCeEEEEEe
Q psy11510 113 HELLQEERLAGATLLVFAN 131 (171)
Q Consensus 113 ~~i~~~~~~~~~p~ivv~n 131 (171)
............+..++.|
T Consensus 81 ~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 81 EVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHHHhhccCCceEEEEeC
Confidence 2232222234455555544
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00061 Score=57.01 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.-.|+++|+.|+||||++.++..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999988764
No 401
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.63 E-value=0.00063 Score=53.75 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=60.7
Q ss_pred EEEEeCCCCcHHHHHHHHhc------------------cc--------------------------------------cC
Q psy11510 41 VSLLRNKNGGETLILKKKKM------------------IM--------------------------------------TF 64 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~------------------~~--------------------------------------~~ 64 (171)
.++-|-=|+||||++++++. ++ .+
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 46788999999999999998 11 12
Q ss_pred ceEEEEEecCCccchhHHHHHhhh--------CCCEEEEEEeCCChhhH-HHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFE--------STDGLIWVVDSADKRRL-EDCARELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
....-++++.|-..-.+....+.. ..|+++-|+|+..-..- ..+.+.+.+-+. ..=++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccC
Confidence 233446666665544444444333 35889999998774432 223333333322 234578999999
Q ss_pred CCCCCHHHHHHH
Q psy11510 136 EGALTPEDIKNV 147 (171)
Q Consensus 136 ~~~~~~~~~~~~ 147 (171)
.++...+.++..
T Consensus 158 v~~~~l~~l~~~ 169 (323)
T COG0523 158 VDAEELEALEAR 169 (323)
T ss_pred CCHHHHHHHHHH
Confidence 874433333333
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00034 Score=58.03 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.--++++|+.||||||.+.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999886
No 403
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.63 E-value=0.00046 Score=55.02 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
.++.|--|+|||||+++++.
T Consensus 7 ~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 67889999999999999986
No 404
>PRK12289 GTPase RsgA; Reviewed
Probab=97.63 E-value=7e-05 Score=59.84 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.++++|.+|||||||+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcC
Confidence 389999999999999999997
No 405
>PF05729 NACHT: NACHT domain
Probab=97.62 E-value=0.00073 Score=47.37 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=51.1
Q ss_pred EEEEeCCCCcHHHHHHHHhc-----cccC-ceEEEEEecCC----ccc---hh---------------HHHHHhhhCCCE
Q psy11510 41 VSLLRNKNGGETLILKKKKM-----IMTF-RFKLNIWDVGG----QKS---LR---------------SYWRNYFESTDG 92 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~-----~~~~-~~~~~i~d~~g----~~~---~~---------------~~~~~~~~~~~~ 92 (171)
+++.|++|+||||+++++.. .... ...+.+|-..+ ... .. ..+........-
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999997 1111 12333332222 110 00 011223445677
Q ss_pred EEEEEeCCChhhH-------HHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 93 LIWVVDSADKRRL-------EDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 93 ii~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
+++++|.-|.-.- .....++..++.....++..+++..
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~ 127 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITS 127 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEE
Confidence 7888886552221 2344566666665445677777664
No 406
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00023 Score=64.36 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=61.9
Q ss_pred EEEEeCCCCcHHHHHHHHhc------------cc---------cCceEEEEEecCCcc--------chhHHHHHhh----
Q psy11510 41 VSLLRNKNGGETLILKKKKM------------IM---------TFRFKLNIWDVGGQK--------SLRSYWRNYF---- 87 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~------------~~---------~~~~~~~i~d~~g~~--------~~~~~~~~~~---- 87 (171)
.++||++|+||||++..--. .. .-.-.-.++||.|.. .....|..++
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk 207 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK 207 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence 58999999999999876554 11 112234678999932 3344677663
Q ss_pred -----hCCCEEEEEEeCCChh------h---HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 88 -----ESTDGLIWVVDSADKR------R---LEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 88 -----~~~~~ii~v~d~~~~~------s---~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+..++||+.+|+++-- . ...+..-+.++.+. -....||.++.||.|+..
T Consensus 208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 3589999999975511 1 12233334444322 224799999999999854
No 407
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.61 E-value=7.1e-05 Score=58.08 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-.+++|.+|||||||+|++..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 789999999999999999997
No 408
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.60 E-value=0.00014 Score=56.57 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=51.1
Q ss_pred HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------Hhhhcc
Q psy11510 83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKV 154 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~ 154 (171)
....+..+|++++|+|+..+.+-+. .++...+ .+.|+++|.||+|+.+....+...++. ..|+++
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~ 90 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKK 90 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3455788999999999977654322 1223332 268999999999996431111222222 237899
Q ss_pred CCCHHHHHHHHHHH
Q psy11510 155 KLNKQSKFQVLLNE 168 (171)
Q Consensus 155 ~~~v~~~f~~l~~~ 168 (171)
+.|++++.+.+.+.
T Consensus 91 ~~gi~~L~~~l~~~ 104 (287)
T PRK09563 91 GQGVKKILKAAKKL 104 (287)
T ss_pred cccHHHHHHHHHHH
Confidence 99999988877543
No 409
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.00017 Score=48.82 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999998
No 410
>PRK13796 GTPase YqeH; Provisional
Probab=97.57 E-value=0.00028 Score=56.76 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=52.0
Q ss_pred chhHHHHHhhhCCC-EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH-------
Q psy11510 78 SLRSYWRNYFESTD-GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS------- 148 (171)
Q Consensus 78 ~~~~~~~~~~~~~~-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~------- 148 (171)
.|...... +...+ .+++|+|+.+... .....+.++. .+.|+++|+||+|+.. ....+++.++.
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 44444444 34455 8899999987431 1111222221 3679999999999965 33344444331
Q ss_pred --------HhhhccCCCHHHHHHHHHH
Q psy11510 149 --------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 149 --------~~sa~~~~~v~~~f~~l~~ 167 (171)
..||+++.|++++++.+.+
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999865
No 411
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.57 E-value=9.4e-05 Score=56.27 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.++++|.+|||||||++++..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDP 142 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999999997
No 412
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00099 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.-.++++|+.||||||++.++..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999876
No 413
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00075 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-+++++|+.|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 446999999999999999988765
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.51 E-value=0.0012 Score=54.09 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHh
Q psy11510 39 AVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~ 59 (171)
-.++++|+.||||||++-++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999877664
No 415
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00062 Score=51.42 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.==|.++|++|||||||++-+.+
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334588999999999999999998
No 416
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.50 E-value=0.0011 Score=48.03 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=50.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---cccCceEE-----EEE-e---cC-CccchhHHHHHhhhCCCEEEEEEe----
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---IMTFRFKL-----NIW-D---VG-GQKSLRSYWRNYFESTDGLIWVVD---- 98 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---~~~~~~~~-----~i~-d---~~-g~~~~~~~~~~~~~~~~~ii~v~d---- 98 (171)
.+.=.+.++|+.|+|||||++-+.+ .+...+.+ ... . .+ |+.+--.+...+..+++.+++ |
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL--DEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF--DEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE--ECCcc
Confidence 3555889999999999999999998 12222221 111 1 22 222333355566677776666 4
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFAN 131 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 131 (171)
.-|+.+-+.+.+++.++... .+..++++.+
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~---~~~tiiivsH 130 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEE---GKKTALVVEH 130 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHc---CCCEEEEEEC
Confidence 22344455555555555322 1256666543
No 417
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.50 E-value=0.0028 Score=41.27 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=46.9
Q ss_pred EEEEe-CCCCcHHHHHHHHhc-----------ccc-CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHH
Q psy11510 41 VSLLR-NKNGGETLILKKKKM-----------IMT-FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLED 107 (171)
Q Consensus 41 i~liG-~~~~GKttli~~~~~-----------~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 107 (171)
|.+.| ..|+||||+...+.. ++. ....+.++|+|+.... .....+..+|.++++++.+ ..++..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~ 78 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDG 78 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHH
Confidence 56677 558999999888776 111 1245678899886433 2336677899999999864 445655
Q ss_pred HHHHHH
Q psy11510 108 CARELH 113 (171)
Q Consensus 108 ~~~~~~ 113 (171)
..+++.
T Consensus 79 ~~~~~~ 84 (104)
T cd02042 79 LEKLLE 84 (104)
T ss_pred HHHHHH
Confidence 555444
No 418
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.49 E-value=0.00013 Score=56.73 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
..++++|++|+|||||++.+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999998
No 419
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.45 E-value=0.00013 Score=48.96 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.|++.|++||||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 420
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.44 E-value=0.00045 Score=41.08 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
..++.|+.|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 421
>PRK04195 replication factor C large subunit; Provisional
Probab=97.42 E-value=0.00038 Score=58.02 Aligned_cols=36 Identities=17% Similarity=-0.019 Sum_probs=27.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWD 72 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d 72 (171)
+.-.+++.|++|+||||+++.+.+ ....-+.++.-|
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 356799999999999999999988 444444444434
No 422
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0011 Score=52.22 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=23.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+++-|+++|-.|+||||-+-++..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHH
Confidence 45689999999999999999888877
No 423
>PRK08118 topology modulation protein; Reviewed
Probab=97.39 E-value=0.00014 Score=52.10 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
||+|+|++|||||||.+.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999997
No 424
>KOG0469|consensus
Probab=97.39 E-value=0.00066 Score=56.10 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=78.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------ccc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------------------------------------IMT 63 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------------------------------------~~~ 63 (171)
.++..++.+|-....|||||...+.. -+.
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 45667788999999999999999887 345
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---CCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG---ALT 140 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---~~~ 140 (171)
....++++|.||+-+|.+.-...++=.|+.+.|+|..+.--.+ .+.-+.+.+.+ .+.-+++.||.|..- ..+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHHh----hccceEEeehhhHHHHhhcCC
Confidence 5778999999999999998888899999999999976643221 12223343333 344456689999753 566
Q ss_pred HHHHHHHH
Q psy11510 141 PEDIKNVS 148 (171)
Q Consensus 141 ~~~~~~~~ 148 (171)
.+++-+..
T Consensus 171 ~EeLyqtf 178 (842)
T KOG0469|consen 171 QEELYQTF 178 (842)
T ss_pred HHHHHHHH
Confidence 66655443
No 425
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0025 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=19.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~ 59 (171)
....|+++|+.|+||||.+.++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999998775
No 426
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.38 E-value=0.0051 Score=42.54 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=58.9
Q ss_pred EEEeCCCCcHHHHHHHHhc---------------ccc--CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh
Q psy11510 42 SLLRNKNGGETLILKKKKM---------------IMT--FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR 104 (171)
Q Consensus 42 ~liG~~~~GKttli~~~~~---------------~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 104 (171)
+.-|.+|+||||+...+.. ... -...+.++|+|+.. .......+..+|.++++.+.+. .+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s 80 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-TS 80 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hH
Confidence 3457889999999877776 111 12557888998743 3334567889999999998764 34
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 105 LEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 105 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
+......+..+.+. ....++.+|.|+++..
T Consensus 81 ~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 81 ITDAYALIKKLAKQ--LRVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence 55444444444322 1355777899998743
No 427
>PRK13796 GTPase YqeH; Provisional
Probab=97.37 E-value=0.0002 Score=57.64 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+..++.++|.+|||||||+|++..
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHh
Confidence 345899999999999999999973
No 428
>PTZ00293 thymidine kinase; Provisional
Probab=97.36 E-value=0.0021 Score=47.66 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=49.7
Q ss_pred EEEEeCCCCcHHH-HHHHHhccccCceEEEEE----ecC-----------Ccc-------chhHHHHHhhhCCCEEEEEE
Q psy11510 41 VSLLRNKNGGETL-ILKKKKMIMTFRFKLNIW----DVG-----------GQK-------SLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 41 i~liG~~~~GKtt-li~~~~~~~~~~~~~~i~----d~~-----------g~~-------~~~~~~~~~~~~~~~ii~v~ 97 (171)
-++.|+.++|||| |++++.+....+.++.++ |+- |.. ....++.. +++.|++++
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~-~~~~dvI~I-- 83 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLET-AKNYDVIAI-- 83 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHh-ccCCCEEEE--
Confidence 3569999999999 999888722211111112 111 100 11112222 355666555
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+..+-|..+.++...+. ..++||++.|-..|-..
T Consensus 84 --DEaQFf~~i~~~~~~l~----~~g~~VivaGLd~Df~~ 117 (211)
T PTZ00293 84 --DEGQFFPDLVEFSEAAA----NLGKIVIVAALDGTFQR 117 (211)
T ss_pred --EchHhhHhHHHHHHHHH----HCCCeEEEEecCccccc
Confidence 35555555555544443 35899999999988755
No 429
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.36 E-value=0.00017 Score=57.90 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+++++|.+|||||||++++..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999975
No 430
>PRK00098 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.00022 Score=55.83 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...++++|.+|||||||++.+.+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999987
No 431
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.35 E-value=0.0007 Score=50.37 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=28.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG 74 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~ 74 (171)
....-.+++.|++|+|||++++.+.. .......+...+..
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 44567899999999999999999987 22223344444543
No 432
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.35 E-value=0.0035 Score=51.01 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+=|-++|+-.+|||||++||..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 46688999999999999999998
No 433
>PF13173 AAA_14: AAA domain
Probab=97.35 E-value=0.0013 Score=44.87 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-+++.|+.+|||||+++++..
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~ 24 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAK 24 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 434
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.34 E-value=0.00019 Score=49.54 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.34 E-value=0.00018 Score=51.74 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.+|+++|++|+|||||.+.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00019 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.||+++|++||||||+.+++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999998
No 437
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.32 E-value=0.0017 Score=50.56 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=60.2
Q ss_pred CCCCCceeEEEEEeCCCCcHHHHHHHHhc-----c--ccCceEEEEEecCCccchhH-----------------------
Q psy11510 32 RPQVSNVAVVSLLRNKNGGETLILKKKKM-----I--MTFRFKLNIWDVGGQKSLRS----------------------- 81 (171)
Q Consensus 32 ~~~~~~~~ki~liG~~~~GKttli~~~~~-----~--~~~~~~~~i~d~~g~~~~~~----------------------- 81 (171)
.+...+.-.++++|++|.|||+++++|.. . +...+++.....|.......
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~ 134 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLE 134 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHH
Confidence 44455567899999999999999999997 2 22235566666665332111
Q ss_pred -HHHHhhhCCCEEEEEEeCC-C--hhhHH---HHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510 82 -YWRNYFESTDGLIWVVDSA-D--KRRLE---DCARELHELLQEERLAGATLLVFANK 132 (171)
Q Consensus 82 -~~~~~~~~~~~ii~v~d~~-~--~~s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK 132 (171)
.....++...+=++++|-- + ..+.. .+.+.++.+-++ -++|++.||++
T Consensus 135 ~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne---L~ipiV~vGt~ 189 (302)
T PF05621_consen 135 QQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE---LQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc---cCCCeEEeccH
Confidence 1123456778888888832 2 11222 233344444222 47999999976
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.31 E-value=0.0015 Score=45.49 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
+++.|++|+|||+++..+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 68999999999999999977
No 439
>KOG0057|consensus
Probab=97.29 E-value=0.0019 Score=53.85 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
-++.=||.++|.+||||||+++.++.
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34667999999999999999999987
No 440
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.0023 Score=47.03 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.4
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.=-++++|++|||||||+|-+.+
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhc
Confidence 34578999999999999999988
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00042 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+.=.++++|++|||||||++-+..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34556789999999999999999998
No 442
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.23 E-value=0.0029 Score=47.94 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=40.6
Q ss_pred CCCCCceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCc--cchhHHHHHhhhCC-CEEEEEEeC
Q psy11510 32 RPQVSNVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQ--KSLRSYWRNYFEST-DGLIWVVDS 99 (171)
Q Consensus 32 ~~~~~~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~--~~~~~~~~~~~~~~-~~ii~v~d~ 99 (171)
+-...+..++++-|+.|+||||+++.+.+ ....+ +.+++++.. .....+....-... .-||||=|+
T Consensus 46 Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 46 FLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDL 115 (249)
T ss_pred HHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCC
Confidence 33467889999999999999999999998 33334 445554442 23333333333333 444444444
No 443
>KOG0054|consensus
Probab=97.18 E-value=0.0013 Score=60.46 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=23.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.++.-.++++|+.|+|||||+..+++
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLG 569 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILG 569 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45667899999999999999999999
No 444
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.18 E-value=0.00084 Score=48.17 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
||++.|++|+||||+++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 445
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.17 E-value=0.00027 Score=50.13 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=17.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
||++.|.+|+|||||++.+..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 446
>KOG1533|consensus
Probab=97.17 E-value=0.00041 Score=52.05 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=18.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
+--++||++|+||||.......
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred cceEEEcCCCCCccchhhhHHH
Confidence 4568999999999998776655
No 447
>PRK01889 GTPase RsgA; Reviewed
Probab=97.17 E-value=0.0023 Score=51.40 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=50.6
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHH------HHhhhccCCCH
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKNV------SEKATKVKLNK 158 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~------~~~sa~~~~~v 158 (171)
..++|.+++|+++..+-....+..++..+.. .++|.++|+||+|+.+... .+++... +..|++++.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccH
Confidence 4689999999999754444455555555432 4778899999999976311 1112211 13489999999
Q ss_pred HHHHHHHH
Q psy11510 159 QSKFQVLL 166 (171)
Q Consensus 159 ~~~f~~l~ 166 (171)
+++...+.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99887764
No 448
>PRK08727 hypothetical protein; Validated
Probab=97.16 E-value=0.0018 Score=48.79 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
+++.|++|+|||.|+..+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999877
No 449
>KOG0466|consensus
Probab=97.16 E-value=0.00023 Score=55.35 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=83.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
..-.++|--+|....||||+++.+.+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 45689999999999999999999887
Q ss_pred --cccC---ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----hhhHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510 61 --IMTF---RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----KRRLEDCARELHELLQEERLAGATLLVFAN 131 (171)
Q Consensus 61 --~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 131 (171)
..+. --.+.+.|.||++......-.-..--|+.++++.... +++-+.+.. -++ +.-+-++++-|
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--vei-----M~LkhiiilQN 187 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEI-----MKLKHIIILQN 187 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHH-----hhhceEEEEec
Confidence 1111 1236788999987665432222222477777776554 444444322 112 12357888899
Q ss_pred CCCCCCCC----CHHHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 132 KQDIEGAL----TPEDIKNVS-----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 132 K~Dl~~~~----~~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
|.|+..+. ..+++.++. ..||.-..|++.+.+.+.+.|
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 99997632 223344554 348888899999998887764
No 450
>KOG0459|consensus
Probab=97.15 E-value=0.00029 Score=56.55 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=68.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
++.+++++++|.-.+||||+-.++.. +.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 57789999999999999999888876 3344
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh---hHHHH-H-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR---RLEDC-A-RELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~-~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
.-.+.+.|.||+..|-+-.-.-...+|.-++|+++...+ -|+.- + +....+..- ..-...+++.||.|-+-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt--~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 231 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh--hccceEEEEEEeccCCc
Confidence 567899999999888664444456789889998874422 12221 0 001111111 12356888899999876
No 451
>KOG2743|consensus
Probab=97.15 E-value=0.0038 Score=48.56 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=47.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------------
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------- 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------- 60 (171)
+.---++.|--|+|||||++.++.
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvra 135 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRA 135 (391)
T ss_pred ccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHH
Confidence 334457889999999999999997
Q ss_pred -----cccCceEEEEEecCCccchhHHHHHhhh--------CCCEEEEEEeCCC
Q psy11510 61 -----IMTFRFKLNIWDVGGQKSLRSYWRNYFE--------STDGLIWVVDSAD 101 (171)
Q Consensus 61 -----~~~~~~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~ 101 (171)
-..+++-..+.+|.|...-.++.+.|+. .-|+++-|+|+..
T Consensus 136 ie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~ 189 (391)
T KOG2743|consen 136 IENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKH 189 (391)
T ss_pred HHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhh
Confidence 2223444567788887776666666654 3699999999744
No 452
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.12 E-value=0.0023 Score=53.82 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
-++.=+++++|++|+|||||++-+.+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45667899999999999999999998
No 453
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.10 E-value=0.005 Score=47.00 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
-.+.=+++++|++|+|||||++.+.+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n 38 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIAN 38 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44566899999999999999999998
No 454
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0032 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-+.++|+.|+|||||++.+++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 334688999999999999999999
No 455
>PRK06217 hypothetical protein; Validated
Probab=97.07 E-value=0.0005 Score=49.82 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.+|+|+|.+||||||+.+++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999997
No 456
>PRK05642 DNA replication initiation factor; Validated
Probab=97.06 E-value=0.0022 Score=48.42 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=46.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe-CCChhhHHHHHHHHHHHH
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD-SADKRRLEDCARELHELL 116 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~~~~~~~i~ 116 (171)
..+++.|++|+|||.|++.+.+ ....+..+...+...-..........+.++|.+ ++| +.....-...++.+..++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~L--iiDDi~~~~~~~~~~~~Lf~l~ 123 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELV--CLDDLDVIAGKADWEEALFHLF 123 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEE--EEechhhhcCChHHHHHHHHHH
Confidence 5678999999999999999876 222222333333211000111223345667754 344 221100012223344444
Q ss_pred hccccCCCeEEEEEeCC
Q psy11510 117 QEERLAGATLLVFANKQ 133 (171)
Q Consensus 117 ~~~~~~~~p~ivv~nK~ 133 (171)
+.....+.++++.++..
T Consensus 124 n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 124 NRLRDSGRRLLLAASKS 140 (234)
T ss_pred HHHHhcCCEEEEeCCCC
Confidence 44334567888777653
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.05 E-value=0.0025 Score=44.28 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=33.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-cccCceEEE--EEecCCccchh----HHHHHhhhCCCEEEEEEeC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLN--IWDVGGQKSLR----SYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~--i~d~~g~~~~~----~~~~~~~~~~~~ii~v~d~ 99 (171)
.|.++|+.|+|||||++.+.+ ....++.+- ..+-.|+..+. ..|.. -..|+.+++..+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA~~~~~~~~~ 67 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGADVVLVSSDE 67 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-SEEEEECSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccceEEEEEcCC
Confidence 478999999999999999998 333333333 22222232211 12333 4456666665543
No 458
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.05 E-value=0.0059 Score=47.59 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhC--CCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy11510 39 AVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFES--TDGLIWVVDSADKRRLEDCARELHELL 116 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--~~~ii~v~d~~~~~s~~~~~~~~~~i~ 116 (171)
-.|++.|.+||||||+++.+-... +...|......+..+....... .+.+.+++|+.+...++...+.+..+.
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g-----~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~ 81 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLG-----YYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELR 81 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcC-----CeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHH
Confidence 368999999999999999996321 1223444433333333333322 366788889887654455555555554
No 459
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=97.03 E-value=0.0019 Score=47.53 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----cccCceEEEEEecCCc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----IMTFRFKLNIWDVGGQ 76 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----~~~~~~~~~i~d~~g~ 76 (171)
++++.|.+|+|||++++.+.. .......+.+.|..|.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~ 81 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGS 81 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCcc
Confidence 999999999999999999887 3457888999999876
No 460
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.02 E-value=0.0073 Score=42.04 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 455788999999999999999998
No 461
>KOG3859|consensus
Probab=97.01 E-value=0.002 Score=49.59 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=34.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------cc--cCceEEEEEecCC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------IM--TFRFKLNIWDVGG 75 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------~~--~~~~~~~i~d~~g 75 (171)
..-.++|+-+|..|.|||||+..+.+ .. +-..++.+.||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 45679999999999999999999999 22 3356788999999
No 462
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.01 E-value=0.00072 Score=46.29 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++.+.+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEEccCCCccccceeeecc
Confidence 345789999999999999999998
No 463
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.98 E-value=0.00069 Score=45.55 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
|+|.|.+||||||+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.98 E-value=0.00074 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.++++|++|+||||+++.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 4789999999999999999998
No 465
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.98 E-value=0.0048 Score=46.57 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.+++.|++|+|||+|++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999887
No 466
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.00082 Score=53.28 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-++++|++||||||+++-+.+
T Consensus 31 f~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999999
No 467
>PLN03025 replication factor C subunit; Provisional
Probab=96.97 E-value=0.0077 Score=47.51 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=48.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-cccC-----ceEEEEEecCCccchhHHHHHhhh------CCCEEEEEEeCCChhhHH
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-IMTF-----RFKLNIWDVGGQKSLRSYWRNYFE------STDGLIWVVDSADKRRLE 106 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-~~~~-----~~~~~i~d~~g~~~~~~~~~~~~~------~~~~ii~v~d~~~~~s~~ 106 (171)
-++++.|++|+||||+++.+.. .... -+.++--|..|.+..+.....+.+ ....-++++|-.+.-+-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~- 113 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS- 113 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-
Confidence 4589999999999999999887 2111 223333444454444433333221 12233445553332221
Q ss_pred HHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510 107 DCARELHELLQEERLAGATLLVFANKQD 134 (171)
Q Consensus 107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~D 134 (171)
..+..+...++.. .....++++.|...
T Consensus 114 ~aq~aL~~~lE~~-~~~t~~il~~n~~~ 140 (319)
T PLN03025 114 GAQQALRRTMEIY-SNTTRFALACNTSS 140 (319)
T ss_pred HHHHHHHHHHhcc-cCCceEEEEeCCcc
Confidence 2233344444432 23466777777653
No 468
>KOG0781|consensus
Probab=96.96 E-value=0.0037 Score=51.42 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=69.5
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM---------------------------------------------------- 60 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~---------------------------------------------------- 60 (171)
+..+++|-|.++|-.||||||-+-++..
T Consensus 373 r~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a 452 (587)
T KOG0781|consen 373 RRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAA 452 (587)
T ss_pred HhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChH
Confidence 3356899999999999999999999887
Q ss_pred ---------cccCceEEEEEecCCccchhH-H---HHHhh--hCCCEEEEEEeC-CChhhHHHHHHHHHHHHhccccCCC
Q psy11510 61 ---------IMTFRFKLNIWDVGGQKSLRS-Y---WRNYF--ESTDGLIWVVDS-ADKRRLEDCARELHELLQEERLAGA 124 (171)
Q Consensus 61 ---------~~~~~~~~~i~d~~g~~~~~~-~---~~~~~--~~~~~ii~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~~ 124 (171)
-...+.-+.+.||+|...... + ...+. ...|.|++|-.+ ...++.+.+..+=..+. ....+..
T Consensus 453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~-~~~~~r~ 531 (587)
T KOG0781|consen 453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALA-DHSTPRL 531 (587)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHh-cCCCccc
Confidence 233456678999999543222 1 22222 368999999764 34556777766544553 3333333
Q ss_pred eEEEEEeCCCCCC
Q psy11510 125 TLLVFANKQDIEG 137 (171)
Q Consensus 125 p~ivv~nK~Dl~~ 137 (171)
---++++|+|-.+
T Consensus 532 id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 532 IDGILLTKFDTVD 544 (587)
T ss_pred cceEEEEeccchh
Confidence 4445688988654
No 469
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.96 E-value=0.00081 Score=40.84 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
|.+.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999987
No 470
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.95 E-value=0.011 Score=47.70 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-.+++.|++|+|||++++.+..
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 471
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.95 E-value=0.013 Score=41.64 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.=.++++|+.|+|||||++-+.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556789999999999999999998
No 472
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.94 E-value=0.00076 Score=48.98 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.++++|++|+||||+++.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999987
No 473
>PRK06893 DNA replication initiation factor; Validated
Probab=96.94 E-value=0.0031 Score=47.39 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
--+++.|++|+|||.|++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~ 61 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSN 61 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999987
No 474
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.94 E-value=0.02 Score=37.67 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=52.3
Q ss_pred eCCCCcHHHHHHHHhc---cc-c-----------CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHH
Q psy11510 45 RNKNGGETLILKKKKM---IM-T-----------FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCA 109 (171)
Q Consensus 45 G~~~~GKttli~~~~~---~~-~-----------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~ 109 (171)
+..|+||||+...+.. .. + ....+.+.|+|+.... .....+..+|.++++++.+. .++..+.
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~ 83 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAK 83 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHH
Confidence 4577999998887766 00 1 1124578899986533 23456788999999987544 4555555
Q ss_pred HHHHHHHhccccC-CCeEEEEEeC
Q psy11510 110 RELHELLQEERLA-GATLLVFANK 132 (171)
Q Consensus 110 ~~~~~i~~~~~~~-~~p~ivv~nK 132 (171)
..+..+.+. ..+ ...+.+|+|+
T Consensus 84 ~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 84 RLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHc-CCCCcCceEEEecC
Confidence 555554332 223 4466677775
No 475
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.90 E-value=0.001 Score=49.20 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+++..-|.++|++|||||||++.+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34567799999999999999999987
No 476
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.89 E-value=0.00084 Score=46.44 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
|+++|++|+||||+++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999988
No 477
>PRK03839 putative kinase; Provisional
Probab=96.89 E-value=0.00086 Score=48.32 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
+|+++|.+||||||+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
No 478
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.89 E-value=0.047 Score=38.80 Aligned_cols=90 Identities=12% Similarity=-0.030 Sum_probs=56.0
Q ss_pred EEeCCCCcHHHHHHHHhc------------------------ccc---------Cce--EEEEEecCCccchhHHHHHhh
Q psy11510 43 LLRNKNGGETLILKKKKM------------------------IMT---------FRF--KLNIWDVGGQKSLRSYWRNYF 87 (171)
Q Consensus 43 liG~~~~GKttli~~~~~------------------------~~~---------~~~--~~~i~d~~g~~~~~~~~~~~~ 87 (171)
.-+.+|+||||+.-.+.. ... +-+ .+.++|+|+.... .....+
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~~l 82 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFITAI 82 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHHHH
Confidence 345788999999887776 000 001 4778899885433 234446
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
..+|.++++++.+.. ++......+..+. .. ......+|.|+.|....
T Consensus 83 ~~ad~viiv~~~~~~-s~~~~~~~~~~~~-~~--~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 83 APADEALLVTTPEIS-SLRDADRVKGLLE-AL--GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred HhCCcEEEEeCCCcc-hHHHHHHHHHHHH-Hc--CCceEEEEEeCCccccc
Confidence 789999999986543 4544444444442 21 23457788999987653
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.89 E-value=0.004 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-+.++|.+|||||||++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 34689999999999999999997
No 480
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.89 E-value=0.0092 Score=43.93 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=39.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC--ccchhHHHHHhhhCCCEEEEEEeCCChhhH
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG--QKSLRSYWRNYFESTDGLIWVVDSADKRRL 105 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g--~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~ 105 (171)
+.--+.+.|++|+|||+|..++.. ....+..+.++|+-+ .+++..+...+......=+++++..+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQ 82 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHH
Confidence 344578999999999999999886 222345566778765 222222222222222223556676554443
No 481
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.88 E-value=0.0008 Score=50.41 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=22.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhccc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKMIM 62 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~~~ 62 (171)
+.=-++++|++|||||||++-+-.++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44468999999999999999999833
No 482
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.88 E-value=0.001 Score=49.18 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.+..-|+++|++|||||||++.+..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 44667788999999999999999975
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.86 E-value=0.00086 Score=48.23 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.++++|++||||||+++.+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999876
No 484
>KOG0066|consensus
Probab=96.86 E-value=0.014 Score=47.93 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=29.9
Q ss_pred eccceeeeccceecccccccCCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 12 VGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 12 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.++.++..-..|+.. -.-+|+++|+.|||||||+.-+++
T Consensus 596 y~gqkpLFkkldFGiD---------mdSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 596 YPGQKPLFKKLDFGID---------MDSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred CCCCCchhhccccccc---------ccceeEEECCCCccHHHHHHHHhc
Confidence 3455555555555533 345799999999999999999998
No 485
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.019 Score=40.36 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|+.|+|||||++.+.+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999998
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.83 E-value=0.001 Score=47.84 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-|+++|++||||||+++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 487
>PRK08116 hypothetical protein; Validated
Probab=96.83 E-value=0.0062 Score=46.97 Aligned_cols=93 Identities=10% Similarity=0.093 Sum_probs=51.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCc-cchh-----------HHHHHhhhCCCEEEEEEeCCChh-h
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQ-KSLR-----------SYWRNYFESTDGLIWVVDSADKR-R 104 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~-~~~~-----------~~~~~~~~~~~~ii~v~d~~~~~-s 104 (171)
.-+++.|++|+|||.|+..+.+ .......+.+++.+.- ..+. ......+.++| ++|+|--..+ .
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d--lLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD--LLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC--EEEEecccCCCC
Confidence 4599999999999999999988 2222455555554320 0000 01112245666 3444522111 1
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 105 LEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 105 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
-+.....+..+++.....+.|+|+-.|..
T Consensus 193 t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 193 TEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 12233445556555444678999987754
No 488
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.82 E-value=0.0079 Score=46.82 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
|+++|++|+|||+|...+..
T Consensus 2 i~i~G~t~~GKs~la~~l~~ 21 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAK 21 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 489
>PRK12377 putative replication protein; Provisional
Probab=96.82 E-value=0.0047 Score=47.12 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=51.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCcc-chh---------HHHHHhhhCCCEEEEEEeCCChhhH-
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQK-SLR---------SYWRNYFESTDGLIWVVDSADKRRL- 105 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~~-~~~---------~~~~~~~~~~~~ii~v~d~~~~~s~- 105 (171)
...+++.|++|+|||.|+..+.+ ....+..+.+...+.-- ... ......+.++|. +|+|--.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dL--LiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDL--LVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCE--EEEcCCCCCCCC
Confidence 35799999999999999999998 33334444444433200 000 001112334444 44453211111
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510 106 EDCARELHELLQEERLAGATLLVFANK 132 (171)
Q Consensus 106 ~~~~~~~~~i~~~~~~~~~p~ivv~nK 132 (171)
+.-...+..+++.......|.++.-|-
T Consensus 179 ~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 179 KNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 223455667766655567899988664
No 490
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.82 E-value=0.009 Score=42.95 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
+++.|++|+|||+|..++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 491
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.001 Score=50.03 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
=-|+++|++|+|||||++.+.+
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999998
No 492
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.00088 Score=49.75 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--.+++|++|||||||++.+..
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHh
Confidence 334468999999999999999987
No 493
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.81 E-value=0.0066 Score=51.77 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
-++.=+++++|++|+|||||++-+.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35677899999999999999999987
No 494
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.80 E-value=0.0066 Score=51.67 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.=+++++|++|+|||||++-+.+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4566899999999999999999998
No 495
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.79 E-value=0.0013 Score=45.15 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999998
No 496
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.79 E-value=0.0014 Score=48.47 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=23.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...|.+.|++|||||||.+.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 497
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.78 E-value=0.0022 Score=46.58 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=29.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---cccCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---IMTFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---~~~~~~~~~i~d~~g~ 76 (171)
...=.++++|++|+|||||++-+.+ .....+.++=-|..+.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~ 66 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS 66 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence 3455789999999999999999998 3333444444454443
No 498
>PRK14530 adenylate kinase; Provisional
Probab=96.77 E-value=0.0012 Score=49.08 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
+|+++|++||||||+.+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999976
No 499
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.77 E-value=0.0013 Score=49.79 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
-+..++++++|.+|||||+++..++.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999887
No 500
>PRK14532 adenylate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=47.78 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
++|+++|++||||||+.+++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999986
Done!