Query psy11510
Match_columns 171
No_of_seqs 117 out of 1182
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 20:17:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.8E-33 9.7E-38 207.6 14.9 136 34-170 9-175 (216)
2 1fzq_A ADP-ribosylation factor 100.0 1.2E-29 4.2E-34 182.5 16.7 136 35-170 13-177 (181)
3 2b6h_A ADP-ribosylation factor 100.0 4.7E-29 1.6E-33 181.1 17.0 137 34-170 25-190 (192)
4 1r8s_A ADP-ribosylation factor 100.0 6.9E-29 2.4E-33 174.8 16.8 132 39-170 1-161 (164)
5 3q72_A GTP-binding protein RAD 100.0 6.3E-29 2.2E-33 175.3 15.8 134 37-170 1-163 (166)
6 1ksh_A ARF-like protein 2; sma 100.0 8.3E-29 2.8E-33 178.2 15.8 135 36-170 16-179 (186)
7 1upt_A ARL1, ADP-ribosylation 100.0 1.6E-28 5.6E-33 173.8 16.6 135 36-170 5-168 (171)
8 1f6b_A SAR1; gtpases, N-termin 100.0 6.5E-29 2.2E-33 181.3 14.6 135 35-169 22-197 (198)
9 1zj6_A ADP-ribosylation factor 100.0 2.1E-28 7.2E-33 176.4 17.1 136 35-170 13-177 (187)
10 3kkq_A RAS-related protein M-R 100.0 8.2E-29 2.8E-33 177.6 14.7 136 35-170 15-181 (183)
11 1zd9_A ADP-ribosylation factor 100.0 1.4E-28 4.8E-33 177.7 15.6 136 35-170 19-184 (188)
12 1moz_A ARL1, ADP-ribosylation 100.0 5.6E-29 1.9E-33 178.3 13.2 136 35-170 15-179 (183)
13 3t1o_A Gliding protein MGLA; G 100.0 1.6E-28 5.6E-33 177.5 15.6 136 33-170 9-191 (198)
14 1m2o_B GTP-binding protein SAR 100.0 1.1E-28 3.6E-33 179.0 14.7 134 35-168 20-189 (190)
15 1c1y_A RAS-related protein RAP 100.0 1.7E-28 5.9E-33 172.9 15.4 134 37-170 2-166 (167)
16 3cbq_A GTP-binding protein REM 100.0 1.8E-28 6.1E-33 178.6 15.9 136 35-170 20-187 (195)
17 1u8z_A RAS-related protein RAL 100.0 1.8E-28 6E-33 172.7 15.0 135 36-170 2-166 (168)
18 4bas_A ADP-ribosylation factor 100.0 1.3E-28 4.6E-33 178.6 14.6 136 35-170 14-188 (199)
19 2h17_A ADP-ribosylation factor 100.0 1.5E-28 5.1E-33 176.5 14.1 134 35-168 18-180 (181)
20 3t5g_A GTP-binding protein RHE 100.0 9E-29 3.1E-33 177.1 12.8 136 35-170 3-168 (181)
21 2nzj_A GTP-binding protein REM 100.0 5.5E-28 1.9E-32 171.7 16.5 135 36-170 2-168 (175)
22 3ihw_A Centg3; RAS, centaurin, 100.0 2.9E-28 1E-32 175.9 15.1 131 35-170 17-179 (184)
23 3q85_A GTP-binding protein REM 100.0 2.2E-28 7.5E-33 173.0 14.1 133 38-170 2-166 (169)
24 1wms_A RAB-9, RAB9, RAS-relate 100.0 6.3E-28 2.1E-32 171.8 16.3 137 35-171 4-174 (177)
25 4dsu_A GTPase KRAS, isoform 2B 100.0 4.8E-28 1.7E-32 174.0 15.7 135 36-170 2-165 (189)
26 2x77_A ADP-ribosylation factor 100.0 1.7E-28 5.7E-33 177.1 12.8 135 36-170 20-183 (189)
27 2h57_A ADP-ribosylation factor 100.0 6.2E-28 2.1E-32 174.4 15.8 135 35-169 18-185 (190)
28 2hup_A RAS-related protein RAB 100.0 7E-28 2.4E-32 176.1 16.2 135 35-170 26-192 (201)
29 1z0f_A RAB14, member RAS oncog 100.0 7.9E-28 2.7E-32 171.3 15.7 136 35-171 12-178 (179)
30 2fn4_A P23, RAS-related protei 100.0 4E-28 1.4E-32 173.1 14.1 136 35-170 6-171 (181)
31 1x3s_A RAS-related protein RAB 100.0 7.8E-28 2.7E-32 173.8 15.7 136 35-170 12-177 (195)
32 2efe_B Small GTP-binding prote 100.0 8.5E-28 2.9E-32 171.7 15.6 135 35-170 9-174 (181)
33 1r2q_A RAS-related protein RAB 100.0 5.6E-28 1.9E-32 170.6 14.3 135 35-170 3-168 (170)
34 2bov_A RAla, RAS-related prote 100.0 1.4E-27 4.7E-32 174.1 16.3 136 35-170 11-176 (206)
35 1z08_A RAS-related protein RAB 100.0 3.7E-28 1.3E-32 171.8 12.8 136 35-171 3-169 (170)
36 3tkl_A RAS-related protein RAB 100.0 1E-27 3.5E-32 173.5 15.4 135 35-170 13-178 (196)
37 3reg_A RHO-like small GTPase; 100.0 5E-28 1.7E-32 175.4 13.7 137 33-171 18-188 (194)
38 3oes_A GTPase rhebl1; small GT 100.0 2.2E-28 7.4E-33 178.5 11.9 136 35-170 21-186 (201)
39 2a9k_A RAS-related protein RAL 100.0 8.9E-28 3E-32 172.1 14.9 136 35-170 15-180 (187)
40 3dz8_A RAS-related protein RAB 100.0 3.8E-28 1.3E-32 175.8 12.9 135 35-170 20-185 (191)
41 2ew1_A RAS-related protein RAB 100.0 7.8E-28 2.7E-32 176.2 14.7 135 35-170 23-188 (201)
42 2a5j_A RAS-related protein RAB 100.0 5.6E-28 1.9E-32 174.9 13.6 135 35-170 18-183 (191)
43 2bme_A RAB4A, RAS-related prot 100.0 9.9E-28 3.4E-32 172.2 14.8 135 35-170 7-172 (186)
44 1kao_A RAP2A; GTP-binding prot 100.0 5.7E-28 2E-32 169.9 13.3 134 37-170 2-165 (167)
45 2fu5_C RAS-related protein RAB 100.0 3.8E-28 1.3E-32 174.1 12.6 135 35-170 5-170 (183)
46 1ek0_A Protein (GTP-binding pr 100.0 1.2E-27 3.9E-32 169.0 14.7 133 37-170 2-168 (170)
47 2il1_A RAB12; G-protein, GDP, 100.0 7.3E-28 2.5E-32 174.6 14.0 135 35-170 23-189 (192)
48 1z0j_A RAB-22, RAS-related pro 100.0 1.7E-27 5.7E-32 168.3 15.4 134 36-170 4-168 (170)
49 3q3j_B RHO-related GTP-binding 100.0 4.3E-28 1.5E-32 179.0 12.7 135 35-171 24-203 (214)
50 2g6b_A RAS-related protein RAB 100.0 1.6E-27 5.6E-32 170.1 15.4 135 35-170 7-173 (180)
51 1z06_A RAS-related protein RAB 100.0 8.9E-28 3E-32 173.4 14.1 136 35-170 17-187 (189)
52 2hxs_A RAB-26, RAS-related pro 100.0 1.7E-27 5.8E-32 169.8 15.4 137 35-171 3-173 (178)
53 3bc1_A RAS-related protein RAB 100.0 2.5E-27 8.5E-32 170.7 16.3 136 35-170 8-184 (195)
54 1z2a_A RAS-related protein RAB 100.0 6.7E-28 2.3E-32 170.0 12.7 134 36-171 3-167 (168)
55 3tw8_B RAS-related protein RAB 100.0 1.5E-27 5E-32 170.2 14.4 134 35-170 6-170 (181)
56 2ce2_X GTPase HRAS; signaling 100.0 4.5E-27 1.5E-31 165.0 16.5 134 37-170 2-164 (166)
57 3c5c_A RAS-like protein 12; GD 100.0 7.5E-28 2.6E-32 174.0 12.7 136 35-171 18-186 (187)
58 2atx_A Small GTP binding prote 100.0 2.5E-27 8.6E-32 171.6 15.4 135 35-171 15-193 (194)
59 2fg5_A RAB-22B, RAS-related pr 100.0 1.8E-27 6.1E-32 172.5 14.5 135 35-170 20-185 (192)
60 2p5s_A RAS and EF-hand domain 100.0 1.5E-27 5E-32 173.8 13.7 135 35-170 25-196 (199)
61 2iwr_A Centaurin gamma 1; ANK 100.0 2.5E-27 8.6E-32 169.1 14.7 130 36-170 5-168 (178)
62 4gzl_A RAS-related C3 botulinu 100.0 6.9E-28 2.4E-32 176.5 12.0 138 31-170 23-204 (204)
63 2g3y_A GTP-binding protein GEM 100.0 3.7E-27 1.3E-31 174.1 15.9 136 35-170 34-202 (211)
64 2atv_A RERG, RAS-like estrogen 100.0 1.5E-27 5.1E-32 173.3 13.6 135 35-170 25-190 (196)
65 1zbd_A Rabphilin-3A; G protein 100.0 6E-27 2.1E-31 170.7 16.7 134 36-170 6-170 (203)
66 1g16_A RAS-related protein SEC 100.0 2.4E-27 8.2E-32 167.5 14.1 133 37-170 2-164 (170)
67 1ky3_A GTP-binding protein YPT 100.0 2.3E-27 7.7E-32 169.4 13.9 136 35-170 5-177 (182)
68 2f7s_A C25KG, RAS-related prot 100.0 2E-27 6.7E-32 175.1 13.8 136 35-170 22-198 (217)
69 2oil_A CATX-8, RAS-related pro 100.0 2.8E-27 9.5E-32 171.2 14.3 135 35-170 22-187 (193)
70 2y8e_A RAB-protein 6, GH09086P 100.0 2E-27 6.9E-32 169.2 13.2 135 35-170 11-176 (179)
71 1m7b_A RND3/RHOE small GTP-bin 100.0 1.8E-27 6.3E-32 171.2 13.1 135 35-171 4-183 (184)
72 2gf9_A RAS-related protein RAB 99.9 3.1E-27 1.1E-31 170.6 14.2 135 35-170 19-184 (189)
73 3con_A GTPase NRAS; structural 99.9 4.9E-27 1.7E-31 169.4 15.1 136 35-170 18-182 (190)
74 2o52_A RAS-related protein RAB 99.9 2E-27 7E-32 173.4 12.9 135 35-170 22-187 (200)
75 2bcg_Y Protein YP2, GTP-bindin 99.9 5.1E-27 1.7E-31 171.6 14.9 135 35-170 5-170 (206)
76 3o47_A ADP-ribosylation factor 99.9 5E-27 1.7E-31 184.0 15.1 137 35-171 162-327 (329)
77 3clv_A RAB5 protein, putative; 99.9 1.4E-26 4.8E-31 167.8 16.3 133 35-170 4-203 (208)
78 2gf0_A GTP-binding protein DI- 99.9 5.9E-27 2E-31 169.8 14.1 137 33-169 3-169 (199)
79 3cpj_B GTP-binding protein YPT 99.9 2.9E-27 1E-31 175.2 12.6 135 35-170 10-175 (223)
80 1vg8_A RAS-related protein RAB 99.9 6.2E-27 2.1E-31 170.8 13.7 136 35-170 5-174 (207)
81 3bwd_D RAC-like GTP-binding pr 99.9 2.5E-27 8.6E-32 169.4 11.2 135 35-171 5-181 (182)
82 2gco_A H9, RHO-related GTP-bin 99.9 7.7E-27 2.6E-31 170.3 14.0 135 35-171 22-200 (201)
83 2q3h_A RAS homolog gene family 99.9 4.6E-27 1.6E-31 171.1 12.7 134 35-170 17-194 (201)
84 1mh1_A RAC1; GTP-binding, GTPa 99.9 4.9E-27 1.7E-31 168.3 12.4 134 36-171 3-180 (186)
85 1gwn_A RHO-related GTP-binding 99.9 4.3E-27 1.5E-31 172.7 12.3 134 35-170 25-203 (205)
86 2j1l_A RHO-related GTP-binding 99.9 5.8E-27 2E-31 172.7 12.9 134 35-170 31-208 (214)
87 3gj0_A GTP-binding nuclear pro 99.9 2.5E-27 8.4E-32 175.2 10.9 134 35-170 12-174 (221)
88 2j0v_A RAC-like GTP-binding pr 99.9 6E-27 2.1E-31 171.9 12.9 134 35-170 6-179 (212)
89 2erx_A GTP-binding protein DI- 99.9 7.6E-27 2.6E-31 165.0 13.0 133 37-169 2-165 (172)
90 2yc2_C IFT27, small RAB-relate 99.9 5.2E-27 1.8E-31 171.1 11.3 135 36-170 18-191 (208)
91 4djt_A GTP-binding nuclear pro 99.9 6.8E-27 2.3E-31 172.3 11.7 135 35-170 8-174 (218)
92 2cjw_A GTP-binding protein GEM 99.9 2.5E-26 8.7E-31 166.8 14.3 135 36-170 4-171 (192)
93 2fv8_A H6, RHO-related GTP-bin 99.9 2.2E-26 7.6E-31 168.6 13.8 135 35-171 22-200 (207)
94 3cph_A RAS-related protein SEC 99.9 3.1E-26 1.1E-30 167.8 14.0 135 35-170 17-181 (213)
95 3lvq_E ARF-GAP with SH3 domain 99.9 5.9E-26 2E-30 186.4 15.9 135 35-169 319-482 (497)
96 3llu_A RAS-related GTP-binding 99.9 6.2E-26 2.1E-30 164.9 11.8 133 35-170 17-196 (196)
97 2fh5_B SR-beta, signal recogni 99.9 3.2E-25 1.1E-29 162.9 15.3 135 35-169 4-214 (214)
98 3l0i_B RAS-related protein RAB 99.9 1E-27 3.4E-32 174.7 1.8 135 35-170 30-195 (199)
99 3th5_A RAS-related C3 botulinu 99.9 1.9E-27 6.5E-32 173.7 0.0 135 34-170 26-204 (204)
100 2wkq_A NPH1-1, RAS-related C3 99.9 1.6E-24 5.4E-29 168.6 12.7 134 36-171 153-330 (332)
101 2zej_A Dardarin, leucine-rich 99.9 8.4E-25 2.9E-29 157.4 8.5 131 38-170 2-177 (184)
102 3ohm_A Guanine nucleotide-bind 99.9 1.6E-24 5.3E-29 169.1 9.3 108 63-170 164-317 (327)
103 2f9l_A RAB11B, member RAS onco 99.9 1.9E-23 6.6E-28 152.0 14.4 134 36-170 3-167 (199)
104 3c5h_A Glucocorticoid receptor 99.9 1.8E-24 6.1E-29 163.8 8.8 136 35-170 16-254 (255)
105 2lkc_A Translation initiation 99.9 8.8E-24 3E-28 150.4 11.2 129 35-169 5-169 (178)
106 1cip_A Protein (guanine nucleo 99.9 5.5E-24 1.9E-28 167.9 10.6 107 64-170 191-343 (353)
107 2wji_A Ferrous iron transport 99.9 3.7E-23 1.3E-27 146.4 13.7 126 37-169 2-163 (165)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 2.4E-24 8.1E-29 167.6 7.7 128 40-170 1-173 (331)
109 1oix_A RAS-related protein RAB 99.9 5E-23 1.7E-27 149.2 13.3 135 35-170 26-191 (191)
110 2dyk_A GTP-binding protein; GT 99.9 1.1E-23 3.8E-28 147.4 9.1 124 39-169 2-160 (161)
111 2qu8_A Putative nucleolar GTP- 99.9 1.4E-22 4.8E-27 150.5 15.0 137 31-170 21-204 (228)
112 3r7w_A Gtpase1, GTP-binding pr 99.9 4E-23 1.4E-27 160.3 11.9 133 37-170 2-180 (307)
113 1nrj_B SR-beta, signal recogni 99.9 7.5E-23 2.6E-27 150.6 10.6 107 35-141 9-138 (218)
114 3pqc_A Probable GTP-binding pr 99.9 1.5E-22 5.3E-27 145.8 12.0 129 35-170 20-193 (195)
115 2gj8_A MNME, tRNA modification 99.9 4.7E-24 1.6E-28 152.2 3.3 132 36-169 2-164 (172)
116 1svi_A GTP-binding protein YSX 99.9 1.8E-22 6.1E-27 145.8 11.7 131 35-170 20-194 (195)
117 2wjg_A FEOB, ferrous iron tran 99.9 3.2E-22 1.1E-26 143.7 12.9 128 35-169 4-167 (188)
118 2xtz_A Guanine nucleotide-bind 99.9 2.4E-23 8.3E-28 164.2 7.4 107 64-170 181-344 (354)
119 2cxx_A Probable GTP-binding pr 99.9 2.4E-23 8.2E-28 149.6 6.7 131 39-170 2-183 (190)
120 4fid_A G protein alpha subunit 99.9 1.5E-22 5.2E-27 158.5 11.1 107 64-170 159-327 (340)
121 1zcb_A G alpha I/13; GTP-bindi 99.9 8.5E-23 2.9E-27 161.6 9.4 107 64-170 199-352 (362)
122 2ged_A SR-beta, signal recogni 99.9 3.1E-22 1.1E-26 144.5 9.8 114 35-148 45-181 (193)
123 3iev_A GTP-binding protein ERA 99.9 1.7E-21 5.8E-26 151.2 12.6 133 33-169 5-180 (308)
124 3a1s_A Iron(II) transport prot 99.9 1.6E-21 5.3E-26 148.0 11.6 127 36-169 3-165 (258)
125 1azs_C GS-alpha; complex (lyas 99.9 3.6E-22 1.2E-26 159.5 8.3 107 64-170 215-384 (402)
126 3dpu_A RAB family protein; roc 99.9 1.9E-21 6.5E-26 161.0 12.3 131 35-170 38-207 (535)
127 3iby_A Ferrous iron transport 99.9 1.2E-21 4.3E-26 148.3 8.7 122 39-167 2-163 (256)
128 3i8s_A Ferrous iron transport 99.9 1.4E-21 4.8E-26 149.4 8.9 126 37-169 2-167 (274)
129 3b1v_A Ferrous iron uptake tra 99.9 2.9E-21 9.9E-26 147.5 10.5 124 37-168 2-161 (272)
130 1wf3_A GTP-binding protein; GT 99.8 3.1E-21 1.1E-25 149.3 9.9 130 36-168 5-170 (301)
131 2hjg_A GTP-binding protein ENG 99.8 5.2E-21 1.8E-25 154.9 11.0 154 11-169 135-347 (436)
132 3gee_A MNME, tRNA modification 99.8 2.9E-21 9.8E-26 157.7 9.3 131 36-169 231-396 (476)
133 4dhe_A Probable GTP-binding pr 99.8 1.8E-21 6.2E-26 143.5 7.3 130 35-169 26-209 (223)
134 4dcu_A GTP-binding protein ENG 99.8 1.9E-20 6.5E-25 152.4 13.3 155 10-169 154-367 (456)
135 3k53_A Ferrous iron transport 99.8 2.3E-20 7.7E-25 142.3 12.0 127 37-169 2-164 (271)
136 3sjy_A Translation initiation 99.8 4.2E-20 1.4E-24 148.2 13.7 134 33-169 3-190 (403)
137 2e87_A Hypothetical protein PH 99.8 1.4E-19 4.7E-24 143.1 14.7 132 36-169 165-334 (357)
138 1xzp_A Probable tRNA modificat 99.8 3E-20 1E-24 151.9 11.1 126 37-169 242-403 (482)
139 1mky_A Probable GTP-binding pr 99.8 4.2E-20 1.4E-24 149.7 11.6 124 40-169 3-164 (439)
140 3qq5_A Small GTP-binding prote 99.8 1.3E-20 4.6E-25 151.6 7.3 128 35-169 31-194 (423)
141 2hjg_A GTP-binding protein ENG 99.8 3.3E-20 1.1E-24 150.2 8.1 127 38-169 3-163 (436)
142 3geh_A MNME, tRNA modification 99.8 4.8E-20 1.7E-24 150.0 7.2 127 36-169 222-382 (462)
143 2ywe_A GTP-binding protein LEP 99.8 1E-18 3.4E-23 145.9 15.1 129 36-169 4-182 (600)
144 1lnz_A SPO0B-associated GTP-bi 99.8 9.5E-20 3.2E-24 143.2 8.5 132 39-170 159-329 (342)
145 3cb4_D GTP-binding protein LEP 99.8 6.6E-19 2.3E-23 147.1 13.0 128 37-169 3-180 (599)
146 3tr5_A RF-3, peptide chain rel 99.8 5.7E-18 1.9E-22 139.9 16.2 98 36-138 11-149 (528)
147 2xtp_A GTPase IMAP family memb 99.8 2.1E-18 7.3E-23 130.3 11.4 132 35-169 19-206 (260)
148 4dcu_A GTP-binding protein ENG 99.8 3.9E-19 1.3E-23 144.6 7.5 128 35-169 20-183 (456)
149 3izy_P Translation initiation 99.8 9.7E-20 3.3E-24 150.3 2.3 128 37-169 3-166 (537)
150 1s0u_A EIF-2-gamma, translatio 99.8 1.3E-17 4.4E-22 133.9 14.5 128 35-169 5-196 (408)
151 1mky_A Probable GTP-binding pr 99.8 7.3E-18 2.5E-22 136.5 12.8 153 12-169 137-353 (439)
152 1wb1_A Translation elongation 99.8 7.3E-18 2.5E-22 138.0 12.7 127 35-169 16-187 (482)
153 3lxx_A GTPase IMAP family memb 99.8 3.9E-18 1.3E-22 127.4 10.0 133 35-169 26-212 (239)
154 3p26_A Elongation factor 1 alp 99.7 2.3E-18 7.8E-23 141.0 8.4 124 35-160 30-227 (483)
155 1ega_A Protein (GTP-binding pr 99.7 2.6E-18 8.9E-23 132.9 7.9 126 37-168 7-172 (301)
156 1kk1_A EIF2gamma; initiation o 99.7 1.1E-17 3.9E-22 134.3 11.9 130 33-169 5-198 (410)
157 3lxw_A GTPase IMAP family memb 99.7 3.1E-17 1.1E-21 123.5 13.0 134 35-169 18-206 (247)
158 2qtf_A Protein HFLX, GTP-bindi 99.7 3.1E-17 1.1E-21 129.9 12.9 130 38-169 178-352 (364)
159 3j2k_7 ERF3, eukaryotic polype 99.7 3.5E-17 1.2E-21 132.6 13.1 125 35-163 14-217 (439)
160 1jny_A EF-1-alpha, elongation 99.7 3.2E-18 1.1E-22 138.5 5.7 127 35-162 3-204 (435)
161 2aka_B Dynamin-1; fusion prote 99.7 2.3E-17 7.9E-22 126.7 9.9 130 35-168 23-250 (299)
162 3def_A T7I23.11 protein; chlor 99.7 2.5E-17 8.6E-22 124.9 9.8 102 35-137 33-165 (262)
163 3t5d_A Septin-7; GTP-binding p 99.7 2.1E-17 7.3E-22 126.0 9.4 128 36-168 6-201 (274)
164 2elf_A Protein translation elo 99.7 4.5E-17 1.5E-21 129.2 11.6 123 40-169 23-178 (370)
165 2c78_A Elongation factor TU-A; 99.7 4.5E-17 1.5E-21 130.6 11.7 98 35-137 8-142 (405)
166 1zo1_I IF2, translation initia 99.7 7.8E-19 2.7E-23 143.8 0.5 124 36-167 2-163 (501)
167 1d2e_A Elongation factor TU (E 99.7 4.1E-17 1.4E-21 130.6 10.3 127 37-168 2-192 (397)
168 1g7s_A Translation initiation 99.7 2.4E-17 8.2E-22 137.7 8.7 124 37-168 4-167 (594)
169 1zun_B Sulfate adenylate trans 99.7 1.5E-16 5.1E-21 128.7 12.5 124 35-162 21-215 (434)
170 3izq_1 HBS1P, elongation facto 99.7 2E-17 6.8E-22 138.7 7.4 124 35-161 164-362 (611)
171 2h5e_A Peptide chain release f 99.7 7.5E-17 2.6E-21 133.2 10.2 100 36-140 11-151 (529)
172 1f60_A Elongation factor EEF1A 99.7 1.7E-16 5.9E-21 129.2 9.7 122 35-161 4-202 (458)
173 2qag_A Septin-2, protein NEDD5 99.7 3E-17 1E-21 129.9 4.1 128 36-170 35-232 (361)
174 1dar_A EF-G, elongation factor 99.6 4.3E-15 1.5E-19 126.3 15.9 98 35-137 9-143 (691)
175 1r5b_A Eukaryotic peptide chai 99.6 7.4E-17 2.5E-21 131.6 4.9 127 35-162 40-243 (467)
176 1h65_A Chloroplast outer envel 99.6 5.5E-16 1.9E-20 117.9 8.9 101 36-137 37-168 (270)
177 3avx_A Elongation factor TS, e 99.6 9E-16 3.1E-20 134.8 10.7 129 35-168 293-483 (1289)
178 2dy1_A Elongation factor G; tr 99.6 6E-15 2E-19 124.9 14.8 97 35-136 6-139 (665)
179 1pui_A ENGB, probable GTP-bind 99.6 1.3E-15 4.4E-20 111.0 9.3 132 33-169 21-197 (210)
180 1jwy_B Dynamin A GTPase domain 99.6 3.9E-15 1.3E-19 115.1 10.4 99 66-168 131-259 (315)
181 3l82_B F-box only protein 4; T 99.6 5.4E-16 1.9E-20 113.0 4.9 97 73-170 109-222 (227)
182 3mca_A HBS1, elongation factor 99.6 1.6E-16 5.6E-21 132.8 1.6 117 35-159 174-371 (592)
183 2j69_A Bacterial dynamin-like 99.6 7.6E-15 2.6E-19 124.8 11.6 67 67-137 175-244 (695)
184 1udx_A The GTP-binding protein 99.6 1.5E-14 5E-19 116.3 11.3 131 39-170 158-324 (416)
185 2xex_A Elongation factor G; GT 99.6 3E-14 1E-18 121.1 12.5 99 35-138 7-142 (693)
186 2qpt_A EH domain-containing pr 99.6 2.3E-15 7.7E-20 125.0 5.3 99 35-137 62-232 (550)
187 1n0u_A EF-2, elongation factor 99.5 1E-14 3.6E-19 126.2 8.6 98 35-137 16-164 (842)
188 2rdo_7 EF-G, elongation factor 99.5 6E-14 2.1E-18 119.4 13.1 99 35-138 7-149 (704)
189 3l2o_B F-box only protein 4; s 99.5 6.1E-15 2.1E-19 112.3 5.2 97 73-170 194-307 (312)
190 3vqt_A RF-3, peptide chain rel 99.5 3.3E-13 1.1E-17 111.9 16.0 98 35-137 28-166 (548)
191 2x2e_A Dynamin-1; nitration, h 99.5 2.1E-14 7.3E-19 113.1 7.6 128 36-167 29-254 (353)
192 3t34_A Dynamin-related protein 99.5 7.5E-14 2.6E-18 110.2 8.9 68 67-137 137-217 (360)
193 3p32_A Probable GTPase RV1496/ 99.5 4.7E-14 1.6E-18 111.3 7.6 123 35-169 76-282 (355)
194 2qnr_A Septin-2, protein NEDD5 99.5 2.8E-14 9.7E-19 110.2 6.1 128 36-170 16-213 (301)
195 1u0l_A Probable GTPase ENGC; p 99.5 1.4E-14 4.8E-19 111.9 3.3 96 67-168 64-170 (301)
196 1wxq_A GTP-binding protein; st 99.5 2.1E-14 7.3E-19 114.8 4.2 64 39-102 1-114 (397)
197 2wsm_A Hydrogenase expression/ 99.5 5.9E-14 2E-18 103.1 6.1 122 36-170 28-213 (221)
198 1yrb_A ATP(GTP)binding protein 99.5 2.7E-13 9.2E-18 102.0 9.5 134 35-169 11-255 (262)
199 2qag_C Septin-7; cell cycle, c 99.4 1.2E-13 4.1E-18 111.0 6.1 127 36-168 29-224 (418)
200 2www_A Methylmalonic aciduria 99.4 1.1E-12 3.8E-17 103.2 9.9 121 36-168 72-276 (349)
201 2p67_A LAO/AO transport system 99.4 5.6E-13 1.9E-17 104.6 7.9 123 35-169 53-259 (341)
202 3j25_A Tetracycline resistance 99.4 9.8E-13 3.4E-17 110.9 9.3 94 39-137 3-133 (638)
203 1jal_A YCHF protein; nucleotid 99.3 4E-11 1.4E-15 94.6 12.5 63 39-101 3-108 (363)
204 4fn5_A EF-G 1, elongation fact 99.3 5.7E-11 2E-15 101.3 13.2 98 36-138 11-152 (709)
205 4a9a_A Ribosome-interacting GT 99.3 2.1E-11 7.1E-16 96.7 9.4 97 38-136 72-195 (376)
206 2hf9_A Probable hydrogenase ni 99.3 1.5E-12 5.3E-17 95.7 2.4 46 124-169 165-222 (226)
207 2dby_A GTP-binding protein; GD 99.2 5.4E-11 1.9E-15 94.1 10.3 63 39-101 2-111 (368)
208 3zvr_A Dynamin-1; hydrolase, D 99.2 5.8E-11 2E-15 101.4 9.6 128 36-167 49-274 (772)
209 2qm8_A GTPase/ATPase; G protei 99.1 4.5E-10 1.5E-14 88.0 9.5 122 35-168 52-258 (337)
210 2yv5_A YJEQ protein; hydrolase 99.1 5.2E-11 1.8E-15 91.9 3.2 102 62-167 46-165 (302)
211 2ohf_A Protein OLA1, GTP-bindi 99.0 3.2E-10 1.1E-14 90.3 6.6 70 35-104 19-131 (396)
212 2j37_W Signal recognition part 98.8 2.7E-08 9.3E-13 81.6 10.8 124 36-167 99-309 (504)
213 2qag_B Septin-6, protein NEDD5 98.6 2E-07 6.9E-12 74.9 8.9 26 35-60 39-64 (427)
214 3h2y_A GTPase family protein; 98.6 9.2E-08 3.2E-12 75.7 6.9 109 50-167 32-156 (368)
215 3sop_A Neuronal-specific septi 98.6 3.4E-07 1.2E-11 69.4 9.1 23 38-60 2-24 (270)
216 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 3E-07 1E-11 73.3 8.7 67 35-101 17-127 (392)
217 3ec1_A YQEH GTPase; atnos1, at 98.5 2.1E-08 7.2E-13 79.4 -0.0 106 38-148 162-299 (369)
218 3ec1_A YQEH GTPase; atnos1, at 98.4 2.3E-07 7.9E-12 73.4 5.7 108 51-167 35-158 (369)
219 3h2y_A GTPase family protein; 98.4 1.3E-07 4.3E-12 74.9 2.8 106 38-148 160-298 (368)
220 3dm5_A SRP54, signal recogniti 98.4 2.6E-06 8.8E-11 68.8 10.2 94 37-137 99-253 (443)
221 1puj_A YLQF, conserved hypothe 98.3 6E-07 2.1E-11 68.5 5.6 92 70-168 3-103 (282)
222 1bif_A 6-phosphofructo-2-kinas 98.2 1.4E-06 5E-11 70.8 6.3 79 36-115 37-145 (469)
223 3kl4_A SRP54, signal recogniti 98.2 7.3E-06 2.5E-10 66.0 10.0 93 37-136 96-251 (433)
224 1tq4_A IIGP1, interferon-induc 98.2 2.5E-05 8.5E-10 62.6 12.2 90 37-135 68-187 (413)
225 2v3c_C SRP54, signal recogniti 98.1 1.8E-05 6.1E-10 63.8 9.6 94 36-137 97-252 (432)
226 3cnl_A YLQF, putative uncharac 98.1 1.6E-06 5.6E-11 65.4 2.9 40 39-78 100-156 (262)
227 1puj_A YLQF, conserved hypothe 98.0 3.3E-06 1.1E-10 64.4 4.3 42 36-77 118-176 (282)
228 1j8m_F SRP54, signal recogniti 98.0 3.1E-05 1.1E-09 59.4 8.5 92 38-137 98-253 (297)
229 3szr_A Interferon-induced GTP- 97.9 1.2E-05 4.1E-10 67.5 6.2 21 40-60 47-67 (608)
230 3e70_C DPA, signal recognition 97.7 0.00013 4.6E-09 56.6 8.4 25 36-60 127-151 (328)
231 2yhs_A FTSY, cell division pro 97.7 0.00013 4.3E-09 59.7 8.1 26 35-60 290-315 (503)
232 3cnl_A YLQF, putative uncharac 97.7 1.1E-05 3.8E-10 60.8 1.5 84 74-166 5-96 (262)
233 2xxa_A Signal recognition part 97.7 0.00037 1.2E-08 56.2 10.4 94 36-137 98-254 (433)
234 1f5n_A Interferon-induced guan 97.6 5.8E-05 2E-09 63.0 5.4 44 35-78 35-103 (592)
235 1rj9_A FTSY, signal recognitio 97.6 0.00032 1.1E-08 53.9 8.9 24 37-60 101-124 (304)
236 4dzz_A Plasmid partitioning pr 97.5 0.00066 2.2E-08 48.4 9.4 69 65-137 75-144 (206)
237 1vma_A Cell division protein F 97.5 0.00063 2.2E-08 52.3 9.2 25 36-60 102-126 (306)
238 3end_A Light-independent proto 97.5 0.0018 6.3E-08 49.3 11.6 68 66-135 157-225 (307)
239 2ffh_A Protein (FFH); SRP54, s 97.4 0.00079 2.7E-08 54.1 9.4 24 37-60 97-120 (425)
240 2kjq_A DNAA-related protein; s 97.4 0.00037 1.2E-08 47.9 6.4 24 37-60 35-58 (149)
241 1np6_A Molybdopterin-guanine d 97.4 0.00064 2.2E-08 48.0 7.7 22 39-60 7-28 (174)
242 2v1u_A Cell division control p 97.3 0.0033 1.1E-07 48.8 11.4 25 36-60 42-66 (387)
243 1ye8_A Protein THEP1, hypothet 97.3 0.00013 4.6E-09 51.6 3.0 22 39-60 1-22 (178)
244 1kgd_A CASK, peripheral plasma 97.3 0.00014 4.9E-09 51.3 2.8 22 39-60 6-27 (180)
245 2chg_A Replication factor C sm 97.2 0.0012 4.1E-08 47.0 7.6 21 40-60 40-60 (226)
246 1t9h_A YLOQ, probable GTPase E 97.2 0.00019 6.4E-09 55.3 3.0 75 85-163 82-169 (307)
247 1lvg_A Guanylate kinase, GMP k 97.2 0.00018 6.2E-09 51.6 2.6 22 39-60 5-26 (198)
248 1zp6_A Hypothetical protein AT 97.2 0.0003 1E-08 49.7 3.7 26 36-61 7-32 (191)
249 3a00_A Guanylate kinase, GMP k 97.1 0.00027 9.2E-09 50.1 2.6 20 41-60 4-23 (186)
250 1ls1_A Signal recognition part 97.1 0.0026 8.9E-08 48.5 8.3 24 37-60 97-120 (295)
251 1ex7_A Guanylate kinase; subst 97.1 0.00031 1.1E-08 50.2 2.9 20 41-60 4-23 (186)
252 3tr0_A Guanylate kinase, GMP k 97.1 0.00029 1E-08 50.2 2.8 22 39-60 8-29 (205)
253 3bos_A Putative DNA replicatio 97.0 0.00074 2.5E-08 49.0 4.7 38 37-74 51-89 (242)
254 3c8u_A Fructokinase; YP_612366 97.0 0.00039 1.3E-08 50.1 3.2 26 35-60 19-44 (208)
255 1s96_A Guanylate kinase, GMP k 97.0 0.00034 1.2E-08 51.2 2.8 24 37-60 15-38 (219)
256 3n70_A Transport activator; si 97.0 0.0011 3.6E-08 45.0 5.1 24 37-60 23-46 (145)
257 2yvu_A Probable adenylyl-sulfa 97.0 0.0006 2E-08 48.1 3.9 26 35-60 10-35 (186)
258 1z6g_A Guanylate kinase; struc 97.0 0.00036 1.2E-08 50.8 2.7 25 37-61 22-46 (218)
259 1znw_A Guanylate kinase, GMP k 97.0 0.00037 1.3E-08 50.2 2.7 24 37-60 19-42 (207)
260 1zu4_A FTSY; GTPase, signal re 97.0 0.0048 1.6E-07 47.7 9.1 25 36-60 103-127 (320)
261 4gp7_A Metallophosphoesterase; 97.0 0.00037 1.3E-08 48.7 2.5 22 38-59 9-30 (171)
262 3tau_A Guanylate kinase, GMP k 96.9 0.00043 1.5E-08 50.0 2.8 23 38-60 8-30 (208)
263 3ney_A 55 kDa erythrocyte memb 96.9 0.00061 2.1E-08 49.1 3.4 24 37-60 18-41 (197)
264 2qor_A Guanylate kinase; phosp 96.9 0.00052 1.8E-08 49.3 2.9 24 37-60 11-34 (204)
265 3asz_A Uridine kinase; cytidin 96.9 0.00062 2.1E-08 48.9 3.4 26 36-61 4-29 (211)
266 3lw7_A Adenylate kinase relate 96.9 0.00061 2.1E-08 46.9 3.1 20 39-58 2-21 (179)
267 2j41_A Guanylate kinase; GMP, 96.9 0.00064 2.2E-08 48.5 3.2 24 37-60 5-28 (207)
268 3co5_A Putative two-component 96.9 0.0019 6.7E-08 43.6 5.5 88 38-132 27-115 (143)
269 3kb2_A SPBC2 prophage-derived 96.9 0.00061 2.1E-08 47.0 3.0 21 40-60 3-23 (173)
270 3lnc_A Guanylate kinase, GMP k 96.9 0.00032 1.1E-08 51.3 1.6 23 38-60 27-50 (231)
271 1htw_A HI0065; nucleotide-bind 96.8 0.00059 2E-08 47.4 2.7 24 37-60 32-55 (158)
272 2rhm_A Putative kinase; P-loop 96.8 0.00083 2.8E-08 47.3 3.6 24 37-60 4-27 (193)
273 1kag_A SKI, shikimate kinase I 96.8 0.00063 2.2E-08 47.2 2.9 22 39-60 5-26 (173)
274 3tif_A Uncharacterized ABC tra 96.8 0.00062 2.1E-08 50.3 2.9 24 37-60 30-53 (235)
275 1d2n_A N-ethylmaleimide-sensit 96.8 0.0053 1.8E-07 45.8 8.1 26 35-60 61-86 (272)
276 1ly1_A Polynucleotide kinase; 96.8 0.0008 2.7E-08 46.8 3.3 22 39-60 3-24 (181)
277 3fb4_A Adenylate kinase; psych 96.8 0.00071 2.4E-08 48.8 3.1 22 39-60 1-22 (216)
278 2bdt_A BH3686; alpha-beta prot 96.8 0.00066 2.2E-08 47.9 2.8 21 40-60 4-24 (189)
279 1qhx_A CPT, protein (chloramph 96.8 0.0007 2.4E-08 47.1 2.9 22 39-60 4-25 (178)
280 1aky_A Adenylate kinase; ATP:A 96.8 0.00083 2.8E-08 48.7 3.2 24 37-60 3-26 (220)
281 3dl0_A Adenylate kinase; phosp 96.8 0.00077 2.6E-08 48.6 3.1 22 39-60 1-22 (216)
282 2jaq_A Deoxyguanosine kinase; 96.8 0.00081 2.8E-08 47.7 3.1 21 40-60 2-22 (205)
283 1kht_A Adenylate kinase; phosp 96.8 0.00083 2.8E-08 47.2 3.1 23 38-60 3-25 (192)
284 2pcj_A ABC transporter, lipopr 96.8 0.00079 2.7E-08 49.3 3.1 23 38-60 30-52 (224)
285 1zd8_A GTP:AMP phosphotransfer 96.8 0.00087 3E-08 48.8 3.3 24 37-60 6-29 (227)
286 3cm0_A Adenylate kinase; ATP-b 96.8 0.00097 3.3E-08 46.8 3.4 24 37-60 3-26 (186)
287 2bbw_A Adenylate kinase 4, AK4 96.8 0.00088 3E-08 49.5 3.3 23 37-59 26-48 (246)
288 2wwf_A Thymidilate kinase, put 96.8 0.0012 4.1E-08 47.2 4.0 24 37-60 9-32 (212)
289 4eun_A Thermoresistant glucoki 96.8 0.00087 3E-08 47.9 3.2 25 36-60 27-51 (200)
290 1nks_A Adenylate kinase; therm 96.7 0.00098 3.3E-08 46.8 3.3 33 40-72 3-36 (194)
291 1knq_A Gluconate kinase; ALFA/ 96.7 0.0011 3.8E-08 46.1 3.5 24 37-60 7-30 (175)
292 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 47.3 3.5 26 35-60 17-42 (201)
293 1l8q_A Chromosomal replication 96.7 0.0032 1.1E-07 48.3 6.4 24 37-60 36-59 (324)
294 3vaa_A Shikimate kinase, SK; s 96.7 0.00099 3.4E-08 47.6 3.2 24 37-60 24-47 (199)
295 2orw_A Thymidine kinase; TMTK, 96.7 0.0045 1.6E-07 43.8 6.6 21 40-60 5-25 (184)
296 3t61_A Gluconokinase; PSI-biol 96.7 0.00092 3.2E-08 47.7 2.9 23 38-60 18-40 (202)
297 2qby_B CDC6 homolog 3, cell di 96.7 0.0064 2.2E-07 47.3 8.0 23 38-60 45-67 (384)
298 2rcn_A Probable GTPase ENGC; Y 96.7 0.0034 1.2E-07 49.3 6.3 74 87-165 128-213 (358)
299 1fnn_A CDC6P, cell division co 96.7 0.0072 2.5E-07 47.0 8.2 21 40-60 46-66 (389)
300 2if2_A Dephospho-COA kinase; a 96.7 0.0011 3.7E-08 47.3 3.2 22 39-60 2-23 (204)
301 2plr_A DTMP kinase, probable t 96.7 0.0012 4.2E-08 47.0 3.5 23 38-60 4-26 (213)
302 2i3b_A HCR-ntpase, human cance 96.7 0.00083 2.9E-08 48.0 2.5 21 40-60 3-23 (189)
303 2eyu_A Twitching motility prot 96.7 0.00089 3E-08 50.3 2.8 25 36-60 23-47 (261)
304 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.8E-08 48.0 3.2 22 39-60 6-27 (227)
305 4b4t_L 26S protease subunit RP 96.7 0.018 6.3E-07 46.3 10.6 25 36-60 213-237 (437)
306 2onk_A Molybdate/tungstate ABC 96.7 0.00098 3.4E-08 49.4 3.0 22 39-60 25-46 (240)
307 3tlx_A Adenylate kinase 2; str 96.7 0.0012 4.2E-08 48.8 3.5 25 36-60 27-51 (243)
308 2cbz_A Multidrug resistance-as 96.7 0.0011 3.7E-08 49.1 3.1 24 37-60 30-53 (237)
309 3uie_A Adenylyl-sulfate kinase 96.7 0.0013 4.6E-08 46.9 3.6 25 36-60 23-47 (200)
310 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 46.9 3.4 23 38-60 4-26 (204)
311 1tev_A UMP-CMP kinase; ploop, 96.7 0.0012 4.1E-08 46.4 3.2 23 38-60 3-25 (196)
312 3ea0_A ATPase, para family; al 96.6 0.046 1.6E-06 39.7 12.0 61 86-148 137-197 (245)
313 1b0u_A Histidine permease; ABC 96.6 0.001 3.4E-08 50.0 2.9 24 37-60 31-54 (262)
314 1e4v_A Adenylate kinase; trans 96.6 0.0012 4E-08 47.7 3.2 22 39-60 1-22 (214)
315 3trf_A Shikimate kinase, SK; a 96.6 0.0011 3.8E-08 46.4 3.0 23 38-60 5-27 (185)
316 1y63_A LMAJ004144AAA protein; 96.6 0.0014 4.8E-08 46.2 3.5 24 37-60 9-32 (184)
317 1gvn_B Zeta; postsegregational 96.6 0.0014 4.9E-08 49.7 3.8 26 35-60 30-55 (287)
318 3gfo_A Cobalt import ATP-bindi 96.6 0.001 3.5E-08 50.4 2.9 24 37-60 33-56 (275)
319 1sgw_A Putative ABC transporte 96.6 0.0011 3.7E-08 48.3 2.9 22 39-60 36-57 (214)
320 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0052 1.8E-07 47.6 6.9 23 38-60 171-193 (330)
321 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.021 7.3E-07 43.9 10.4 25 36-60 43-67 (322)
322 2ff7_A Alpha-hemolysin translo 96.6 0.0012 4E-08 49.2 3.1 24 37-60 34-57 (247)
323 2c95_A Adenylate kinase 1; tra 96.6 0.0014 4.8E-08 46.2 3.4 24 37-60 8-31 (196)
324 2qt1_A Nicotinamide riboside k 96.6 0.0019 6.3E-08 46.3 4.1 26 35-60 18-43 (207)
325 2ehv_A Hypothetical protein PH 96.6 0.0011 3.7E-08 48.6 2.9 24 37-60 29-52 (251)
326 1mv5_A LMRA, multidrug resista 96.6 0.0012 4.2E-08 48.9 3.2 24 37-60 27-50 (243)
327 4g1u_C Hemin import ATP-bindin 96.6 0.0011 3.8E-08 49.9 2.9 24 37-60 36-59 (266)
328 4b4t_M 26S protease regulatory 96.6 0.014 4.9E-07 46.9 9.5 25 36-60 213-237 (434)
329 3ec2_A DNA replication protein 96.6 0.00092 3.1E-08 46.8 2.3 24 37-60 37-60 (180)
330 4eaq_A DTMP kinase, thymidylat 96.6 0.0034 1.2E-07 46.0 5.5 39 36-75 24-63 (229)
331 2pze_A Cystic fibrosis transme 96.6 0.0013 4.4E-08 48.3 3.2 24 37-60 33-56 (229)
332 4fcw_A Chaperone protein CLPB; 96.6 0.012 4E-07 44.5 8.7 25 36-60 45-69 (311)
333 1g6h_A High-affinity branched- 96.6 0.0011 3.9E-08 49.5 2.9 24 37-60 32-55 (257)
334 1w4r_A Thymidine kinase; type 96.6 0.013 4.4E-07 42.0 8.2 89 40-137 22-131 (195)
335 4a74_A DNA repair and recombin 96.6 0.0012 4E-08 47.8 2.9 24 37-60 24-47 (231)
336 1nn5_A Similar to deoxythymidy 96.6 0.0015 5.3E-08 46.7 3.5 24 37-60 8-31 (215)
337 2olj_A Amino acid ABC transpor 96.6 0.0012 4.2E-08 49.6 2.9 24 37-60 49-72 (263)
338 1ji0_A ABC transporter; ATP bi 96.6 0.0012 4.1E-08 48.9 2.9 24 37-60 31-54 (240)
339 2z0h_A DTMP kinase, thymidylat 96.6 0.0035 1.2E-07 44.1 5.2 36 40-75 2-38 (197)
340 3sr0_A Adenylate kinase; phosp 96.6 0.0014 4.9E-08 47.4 3.1 22 39-60 1-22 (206)
341 1ukz_A Uridylate kinase; trans 96.6 0.002 6.9E-08 45.8 3.9 26 35-60 12-37 (203)
342 1zak_A Adenylate kinase; ATP:A 96.6 0.0013 4.5E-08 47.6 3.0 23 38-60 5-27 (222)
343 2pt5_A Shikimate kinase, SK; a 96.5 0.0015 5E-08 45.1 3.1 22 39-60 1-22 (168)
344 3be4_A Adenylate kinase; malar 96.5 0.0015 5.2E-08 47.3 3.2 24 37-60 4-27 (217)
345 2ghi_A Transport protein; mult 96.5 0.0014 4.9E-08 49.1 3.1 24 37-60 45-68 (260)
346 2qi9_C Vitamin B12 import ATP- 96.5 0.0013 4.6E-08 49.0 2.9 23 38-60 26-48 (249)
347 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0013 4.5E-08 48.9 2.9 25 37-61 28-52 (250)
348 1uf9_A TT1252 protein; P-loop, 96.5 0.0019 6.4E-08 45.8 3.6 26 36-61 6-31 (203)
349 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.011 3.9E-07 43.4 8.0 24 37-60 38-61 (262)
350 2f1r_A Molybdopterin-guanine d 96.5 0.00077 2.6E-08 47.4 1.5 21 40-60 4-24 (171)
351 2pbr_A DTMP kinase, thymidylat 96.5 0.0035 1.2E-07 43.9 5.0 21 40-60 2-22 (195)
352 1vpl_A ABC transporter, ATP-bi 96.5 0.0014 4.7E-08 49.1 2.9 24 37-60 40-63 (256)
353 2zu0_C Probable ATP-dependent 96.5 0.0014 4.8E-08 49.3 3.0 25 37-61 45-69 (267)
354 4f4c_A Multidrug resistance pr 96.5 0.0049 1.7E-07 56.1 7.0 25 36-60 442-466 (1321)
355 4b4t_K 26S protease regulatory 96.5 0.021 7.1E-07 45.9 9.9 25 36-60 204-228 (428)
356 1jjv_A Dephospho-COA kinase; P 96.5 0.0017 5.7E-08 46.4 3.3 22 39-60 3-24 (206)
357 2rcn_A Probable GTPase ENGC; Y 96.5 0.0015 5.1E-08 51.3 3.2 22 39-60 216-237 (358)
358 2v9p_A Replication protein E1; 96.5 0.0014 4.7E-08 50.4 2.9 27 36-62 124-150 (305)
359 3h4m_A Proteasome-activating n 96.5 0.011 3.7E-07 44.3 7.8 24 37-60 50-73 (285)
360 2ihy_A ABC transporter, ATP-bi 96.5 0.0016 5.4E-08 49.4 3.2 24 37-60 46-69 (279)
361 2ixe_A Antigen peptide transpo 96.5 0.0015 5.3E-08 49.2 3.1 24 37-60 44-67 (271)
362 4b4t_J 26S protease regulatory 96.5 0.019 6.5E-07 45.8 9.5 25 36-60 180-204 (405)
363 1lw7_A Transcriptional regulat 96.5 0.0013 4.5E-08 51.5 2.8 23 38-60 170-192 (365)
364 3b85_A Phosphate starvation-in 96.5 0.0012 4.2E-08 47.8 2.4 21 40-60 24-44 (208)
365 2p5t_B PEZT; postsegregational 96.5 0.0014 4.8E-08 48.7 2.8 27 34-60 28-54 (253)
366 1via_A Shikimate kinase; struc 96.5 0.0014 4.9E-08 45.6 2.7 21 40-60 6-26 (175)
367 2vli_A Antibiotic resistance p 96.5 0.0012 4E-08 46.2 2.2 24 37-60 4-27 (183)
368 3iij_A Coilin-interacting nucl 96.5 0.0016 5.4E-08 45.5 2.9 24 37-60 10-33 (180)
369 2nq2_C Hypothetical ABC transp 96.5 0.0015 5.2E-08 48.8 2.9 23 38-60 31-53 (253)
370 3ld9_A DTMP kinase, thymidylat 96.5 0.0021 7.3E-08 47.1 3.6 37 24-60 7-43 (223)
371 1sxj_D Activator 1 41 kDa subu 96.5 0.0059 2E-07 46.9 6.3 20 41-60 61-80 (353)
372 3aez_A Pantothenate kinase; tr 96.5 0.002 6.8E-08 49.6 3.5 26 35-60 87-112 (312)
373 2yz2_A Putative ABC transporte 96.4 0.0016 5.4E-08 49.0 2.9 24 37-60 32-55 (266)
374 2jeo_A Uridine-cytidine kinase 96.4 0.0019 6.6E-08 47.6 3.3 25 36-60 23-47 (245)
375 1jbk_A CLPB protein; beta barr 96.4 0.002 6.9E-08 44.6 3.3 24 37-60 42-65 (195)
376 3e2i_A Thymidine kinase; Zn-bi 96.4 0.017 6E-07 42.1 8.2 91 39-137 29-142 (219)
377 1rz3_A Hypothetical protein rb 96.4 0.0024 8.2E-08 45.7 3.6 25 36-60 20-44 (201)
378 4b4t_I 26S protease regulatory 96.4 0.025 8.4E-07 45.5 9.7 25 36-60 214-238 (437)
379 1qf9_A UMP/CMP kinase, protein 96.4 0.0027 9.2E-08 44.5 3.8 23 38-60 6-28 (194)
380 2pjz_A Hypothetical protein ST 96.4 0.0019 6.6E-08 48.5 3.2 24 38-61 30-53 (263)
381 2xb4_A Adenylate kinase; ATP-b 96.4 0.0019 6.6E-08 47.0 3.1 22 39-60 1-22 (223)
382 3eie_A Vacuolar protein sortin 96.4 0.01 3.5E-07 45.5 7.3 25 36-60 49-73 (322)
383 1odf_A YGR205W, hypothetical 3 96.4 0.0023 7.9E-08 48.8 3.5 26 35-60 28-53 (290)
384 1u0l_A Probable GTPase ENGC; p 96.4 0.0017 5.8E-08 49.6 2.8 23 38-60 169-191 (301)
385 2bwj_A Adenylate kinase 5; pho 96.4 0.002 6.8E-08 45.5 3.0 23 38-60 12-34 (199)
386 1sxj_C Activator 1 40 kDa subu 96.4 0.015 5.2E-07 44.8 8.2 21 40-60 48-68 (340)
387 1ak2_A Adenylate kinase isoenz 96.4 0.0024 8.1E-08 46.7 3.4 24 37-60 15-38 (233)
388 1gtv_A TMK, thymidylate kinase 96.4 0.00088 3E-08 48.0 1.0 21 40-60 2-22 (214)
389 3fvq_A Fe(3+) IONS import ATP- 96.4 0.002 6.8E-08 50.6 3.1 24 37-60 29-52 (359)
390 4b4t_H 26S protease regulatory 96.3 0.02 7E-07 46.3 8.9 25 36-60 241-265 (467)
391 4e22_A Cytidylate kinase; P-lo 96.3 0.0024 8.1E-08 47.5 3.3 23 37-59 26-48 (252)
392 3tqc_A Pantothenate kinase; bi 96.3 0.0025 8.6E-08 49.3 3.5 26 35-60 89-114 (321)
393 2pez_A Bifunctional 3'-phospho 96.3 0.0027 9.1E-08 44.4 3.3 24 37-60 4-27 (179)
394 2yv5_A YJEQ protein; hydrolase 96.3 0.002 6.8E-08 49.3 2.9 22 38-59 165-186 (302)
395 2bbs_A Cystic fibrosis transme 96.3 0.0024 8.1E-08 48.7 3.3 24 37-60 63-86 (290)
396 1t9h_A YLOQ, probable GTPase E 96.3 0.00087 3E-08 51.6 0.8 24 37-60 172-195 (307)
397 1vht_A Dephospho-COA kinase; s 96.3 0.0027 9.4E-08 45.7 3.5 23 38-60 4-26 (218)
398 3nh6_A ATP-binding cassette SU 96.3 0.0015 5.2E-08 50.2 2.2 25 36-60 78-102 (306)
399 3jvv_A Twitching mobility prot 96.3 0.0019 6.5E-08 50.7 2.7 22 39-60 124-145 (356)
400 1xx6_A Thymidine kinase; NESG, 96.3 0.037 1.3E-06 39.4 9.3 22 39-60 9-30 (191)
401 3kjh_A CO dehydrogenase/acetyl 96.3 0.015 5.2E-07 42.3 7.4 65 65-135 131-195 (254)
402 1sq5_A Pantothenate kinase; P- 96.3 0.003 1E-07 48.4 3.6 41 36-76 78-121 (308)
403 2z4s_A Chromosomal replication 96.3 0.01 3.4E-07 47.8 6.9 23 38-60 130-152 (440)
404 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0028 9.4E-08 47.3 3.3 23 38-60 4-26 (260)
405 1ixz_A ATP-dependent metallopr 96.3 0.0022 7.5E-08 47.4 2.8 20 41-60 52-71 (254)
406 3k9g_A PF-32 protein; ssgcid, 96.3 0.058 2E-06 39.9 10.6 64 66-134 145-208 (267)
407 2zr9_A Protein RECA, recombina 96.3 0.01 3.5E-07 46.4 6.6 23 38-60 61-83 (349)
408 2vp4_A Deoxynucleoside kinase; 96.2 0.0026 8.8E-08 46.5 3.0 27 35-61 17-43 (230)
409 2x8a_A Nuclear valosin-contain 96.2 0.0022 7.6E-08 48.3 2.7 20 41-60 47-66 (274)
410 4edh_A DTMP kinase, thymidylat 96.2 0.0097 3.3E-07 43.2 6.0 39 37-75 5-44 (213)
411 1xjc_A MOBB protein homolog; s 96.2 0.0031 1.1E-07 44.2 3.2 34 39-72 5-39 (169)
412 1z47_A CYSA, putative ABC-tran 96.2 0.0024 8.3E-08 50.1 2.9 23 38-60 41-63 (355)
413 3cwq_A Para family chromosome 96.2 0.12 4E-06 37.0 11.7 91 41-137 3-134 (209)
414 2ze6_A Isopentenyl transferase 96.2 0.0025 8.5E-08 47.4 2.9 21 40-60 3-23 (253)
415 1e6c_A Shikimate kinase; phosp 96.2 0.0026 9E-08 43.9 2.8 21 40-60 4-24 (173)
416 3q5d_A Atlastin-1; G protein, 96.2 0.0069 2.4E-07 48.9 5.6 25 35-59 64-88 (447)
417 2gza_A Type IV secretion syste 96.2 0.0026 8.8E-08 49.9 3.0 24 37-60 174-197 (361)
418 2yyz_A Sugar ABC transporter, 96.2 0.0026 8.8E-08 50.0 2.9 24 37-60 28-51 (359)
419 3rlf_A Maltose/maltodextrin im 96.2 0.0026 8.9E-08 50.3 3.0 24 37-60 28-51 (381)
420 2it1_A 362AA long hypothetical 96.2 0.0026 9E-08 50.0 3.0 24 37-60 28-51 (362)
421 3b9q_A Chloroplast SRP recepto 96.2 0.0025 8.5E-08 48.8 2.8 25 36-60 98-122 (302)
422 1uj2_A Uridine-cytidine kinase 96.2 0.0032 1.1E-07 46.6 3.3 26 35-60 19-44 (252)
423 2f6r_A COA synthase, bifunctio 96.2 0.0038 1.3E-07 47.2 3.7 26 35-60 72-97 (281)
424 2ewv_A Twitching motility prot 96.2 0.0027 9.2E-08 50.1 2.9 24 37-60 135-158 (372)
425 3tui_C Methionine import ATP-b 96.2 0.0028 9.7E-08 49.9 3.0 24 37-60 53-76 (366)
426 2p65_A Hypothetical protein PF 96.1 0.0024 8.2E-08 44.2 2.3 24 37-60 42-65 (187)
427 1g29_1 MALK, maltose transport 96.1 0.0028 9.6E-08 50.0 2.9 23 38-60 29-51 (372)
428 1v43_A Sugar-binding transport 96.1 0.0029 9.9E-08 50.0 3.0 24 37-60 36-59 (372)
429 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0031 1E-07 45.5 2.9 22 39-60 24-45 (235)
430 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.007 2.4E-07 46.9 4.9 21 40-60 125-145 (331)
431 2iyv_A Shikimate kinase, SK; t 96.1 0.0032 1.1E-07 44.0 2.8 21 40-60 4-24 (184)
432 3kta_A Chromosome segregation 96.1 0.0037 1.3E-07 43.7 3.1 21 40-60 28-48 (182)
433 3r20_A Cytidylate kinase; stru 96.1 0.0037 1.3E-07 46.1 3.1 24 37-60 8-31 (233)
434 3q9l_A Septum site-determining 96.1 0.061 2.1E-06 39.4 9.8 68 65-135 113-185 (260)
435 1iy2_A ATP-dependent metallopr 96.1 0.0032 1.1E-07 47.3 2.8 20 41-60 76-95 (278)
436 2oap_1 GSPE-2, type II secreti 96.1 0.0063 2.1E-07 50.0 4.7 24 37-60 259-282 (511)
437 1zuh_A Shikimate kinase; alpha 96.1 0.0039 1.3E-07 43.0 3.0 22 39-60 8-29 (168)
438 1m7g_A Adenylylsulfate kinase; 96.1 0.0044 1.5E-07 44.5 3.4 25 36-60 23-47 (211)
439 3fwy_A Light-independent proto 96.0 0.12 4.2E-06 39.6 11.7 23 38-60 48-70 (314)
440 3d31_A Sulfate/molybdate ABC t 96.0 0.0024 8.3E-08 49.9 2.1 24 37-60 25-48 (348)
441 2qp9_X Vacuolar protein sortin 96.0 0.016 5.3E-07 45.3 6.7 25 36-60 82-106 (355)
442 3gd7_A Fusion complex of cysti 96.0 0.0036 1.2E-07 49.7 3.1 24 37-60 46-69 (390)
443 1lv7_A FTSH; alpha/beta domain 96.0 0.0044 1.5E-07 45.8 3.3 23 38-60 45-67 (257)
444 1p9r_A General secretion pathw 96.0 0.0033 1.1E-07 50.4 2.7 24 37-60 166-189 (418)
445 1in4_A RUVB, holliday junction 96.0 0.0035 1.2E-07 48.5 2.7 22 39-60 52-73 (334)
446 1iqp_A RFCS; clamp loader, ext 96.0 0.0097 3.3E-07 45.1 5.1 21 40-60 48-68 (327)
447 3d8b_A Fidgetin-like protein 1 96.0 0.039 1.3E-06 42.9 8.7 25 36-60 115-139 (357)
448 3u61_B DNA polymerase accessor 96.0 0.017 5.7E-07 44.1 6.5 91 41-134 51-147 (324)
449 1cr0_A DNA primase/helicase; R 95.9 0.004 1.4E-07 47.1 2.9 24 37-60 34-57 (296)
450 3syl_A Protein CBBX; photosynt 95.9 0.0064 2.2E-07 46.0 4.0 26 35-60 64-89 (309)
451 3pfi_A Holliday junction ATP-d 95.9 0.047 1.6E-06 41.8 8.9 24 37-60 54-77 (338)
452 1xp8_A RECA protein, recombina 95.9 0.023 7.9E-07 44.7 7.2 21 40-60 76-96 (366)
453 3vfd_A Spastin; ATPase, microt 95.9 0.028 9.5E-07 44.2 7.7 24 37-60 147-170 (389)
454 1sxj_A Activator 1 95 kDa subu 95.9 0.031 1E-06 45.8 8.2 23 38-60 77-99 (516)
455 2w58_A DNAI, primosome compone 95.9 0.0047 1.6E-07 43.9 3.0 22 39-60 55-76 (202)
456 2cvh_A DNA repair and recombin 95.9 0.0042 1.4E-07 44.5 2.7 24 37-60 19-42 (220)
457 1njg_A DNA polymerase III subu 95.9 0.0042 1.4E-07 44.6 2.7 22 39-60 46-67 (250)
458 2bjv_A PSP operon transcriptio 95.9 0.034 1.2E-06 41.1 7.8 37 38-74 29-66 (265)
459 3ozx_A RNAse L inhibitor; ATP 95.9 0.0073 2.5E-07 49.9 4.4 30 31-60 18-47 (538)
460 1n0w_A DNA repair protein RAD5 95.9 0.0044 1.5E-07 45.1 2.8 24 37-60 23-46 (243)
461 4a1f_A DNAB helicase, replicat 95.9 0.016 5.6E-07 45.0 6.1 23 38-60 46-68 (338)
462 3te6_A Regulatory protein SIR3 95.9 0.056 1.9E-06 41.7 9.0 26 35-60 42-67 (318)
463 1oxx_K GLCV, glucose, ABC tran 95.8 0.0024 8.3E-08 50.0 1.3 24 37-60 30-53 (353)
464 3nwj_A ATSK2; P loop, shikimat 95.8 0.0043 1.5E-07 46.2 2.6 23 38-60 48-70 (250)
465 4f4c_A Multidrug resistance pr 95.8 0.0052 1.8E-07 55.9 3.5 25 36-60 1103-1127(1321)
466 2chq_A Replication factor C sm 95.8 0.01 3.4E-07 44.9 4.6 21 40-60 40-60 (319)
467 1nij_A Hypothetical protein YJ 95.8 0.0038 1.3E-07 48.1 2.3 21 40-60 6-26 (318)
468 3crm_A TRNA delta(2)-isopenten 95.8 0.01 3.4E-07 46.0 4.6 22 39-60 6-27 (323)
469 2grj_A Dephospho-COA kinase; T 95.8 0.0068 2.3E-07 43.3 3.4 25 36-60 10-34 (192)
470 1ltq_A Polynucleotide kinase; 95.8 0.005 1.7E-07 46.6 2.9 22 39-60 3-24 (301)
471 2og2_A Putative signal recogni 95.8 0.0061 2.1E-07 47.9 3.4 25 36-60 155-179 (359)
472 2zan_A Vacuolar protein sortin 95.8 0.03 1E-06 45.1 7.5 24 37-60 166-189 (444)
473 2obl_A ESCN; ATPase, hydrolase 95.8 0.0057 1.9E-07 47.8 3.1 28 35-62 68-95 (347)
474 3umf_A Adenylate kinase; rossm 95.8 0.0075 2.6E-07 44.0 3.6 21 40-60 31-51 (217)
475 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0046 1.6E-07 50.2 2.7 24 37-60 137-160 (460)
476 3t15_A Ribulose bisphosphate c 95.8 0.008 2.7E-07 45.6 3.9 26 35-60 33-58 (293)
477 2b8t_A Thymidine kinase; deoxy 95.8 0.037 1.3E-06 40.5 7.3 24 37-60 11-34 (223)
478 2zts_A Putative uncharacterize 95.8 0.037 1.2E-06 40.2 7.4 24 37-60 29-52 (251)
479 3zvl_A Bifunctional polynucleo 95.7 0.068 2.3E-06 42.6 9.3 25 36-60 256-280 (416)
480 3hr8_A Protein RECA; alpha and 95.7 0.05 1.7E-06 42.6 8.2 39 38-76 61-100 (356)
481 3b9p_A CG5977-PA, isoform A; A 95.7 0.0066 2.2E-07 45.8 3.1 24 37-60 53-76 (297)
482 2ce7_A Cell division protein F 95.7 0.029 1E-06 45.6 7.1 22 39-60 50-71 (476)
483 3foz_A TRNA delta(2)-isopenten 95.7 0.02 6.9E-07 44.1 5.7 23 38-60 10-32 (316)
484 1hqc_A RUVB; extended AAA-ATPa 95.6 0.061 2.1E-06 40.8 8.5 24 37-60 37-60 (324)
485 1q3t_A Cytidylate kinase; nucl 95.6 0.0082 2.8E-07 43.9 3.3 26 35-60 13-38 (236)
486 4ag6_A VIRB4 ATPase, type IV s 95.6 0.011 3.8E-07 46.6 4.2 39 37-75 34-73 (392)
487 1nlf_A Regulatory protein REPA 95.5 0.0076 2.6E-07 45.2 3.0 24 37-60 29-52 (279)
488 1p5z_B DCK, deoxycytidine kina 95.5 0.0057 1.9E-07 45.5 2.3 25 36-60 22-46 (263)
489 2dpy_A FLII, flagellum-specifi 95.5 0.0077 2.6E-07 48.5 3.1 26 35-60 154-179 (438)
490 3b60_A Lipid A export ATP-bind 95.5 0.0079 2.7E-07 50.1 3.3 24 37-60 368-391 (582)
491 1sxj_B Activator 1 37 kDa subu 95.5 0.013 4.6E-07 44.2 4.4 20 41-60 45-64 (323)
492 2qby_A CDC6 homolog 1, cell di 95.5 0.0074 2.5E-07 46.7 2.9 25 36-60 43-67 (386)
493 1f2t_A RAD50 ABC-ATPase; DNA d 95.5 0.0086 2.9E-07 40.9 2.9 20 41-60 26-45 (149)
494 3cf0_A Transitional endoplasmi 95.5 0.0084 2.9E-07 45.6 3.1 24 37-60 48-71 (301)
495 2ius_A DNA translocase FTSK; n 95.5 0.015 5E-07 47.8 4.7 38 38-75 167-209 (512)
496 4tmk_A Protein (thymidylate ki 95.5 0.024 8.1E-07 41.1 5.3 23 38-60 3-25 (213)
497 3eph_A TRNA isopentenyltransfe 95.5 0.029 9.9E-07 44.7 6.2 21 40-60 4-24 (409)
498 2ocp_A DGK, deoxyguanosine kin 95.5 0.011 3.6E-07 43.4 3.5 23 38-60 2-24 (241)
499 2z43_A DNA repair and recombin 95.4 0.15 5.2E-06 39.0 10.1 39 38-76 107-152 (324)
500 3cf2_A TER ATPase, transitiona 95.4 0.05 1.7E-06 47.1 7.9 26 35-60 235-260 (806)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.8e-33 Score=207.57 Aligned_cols=136 Identities=16% Similarity=0.306 Sum_probs=119.1
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
.+.+.+||+++|++|||||||++++.. .+...+.+++|||+|+++|+.+++.|++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 356789999999999999999999986 44567889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++|||++++.+|+.+..|+..+... ..+++|+++||||+|+.+ .++.+++.++. ++||++|.||+++|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence 99999999999999999999998654 346899999999999976 57888887776 67999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 168 ~~i~~~i~ 175 (216)
T 4dkx_A 168 RRVAAALP 175 (216)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99998774
No 2
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=1.2e-29 Score=182.48 Aligned_cols=136 Identities=39% Similarity=0.644 Sum_probs=119.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+.+.+||+++|++|||||||++++.+ +....+.+.+||++|++.++..+..+++++|++++|+|
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 46789999999999999999999997 22346789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
++++.+|+.+..|+..++......++|+++|+||+|+.+....+++.+.. ++||++|.|++++|+++
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 99999999999999998776556789999999999998876666665442 57999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 173 ~~~~~ 177 (181)
T 1fzq_A 173 CKNVN 177 (181)
T ss_dssp HHTC-
T ss_pred HHHHH
Confidence 88764
No 3
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=4.7e-29 Score=181.12 Aligned_cols=137 Identities=35% Similarity=0.577 Sum_probs=116.2
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
..++.+||+++|++|||||||++++.. +....+.+.+||+||++++...+..+++++|++++|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 367889999999999999999999976 3445688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~ 164 (171)
|++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDW 184 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHH
Confidence 999999999999999999876666789999999999998866666655443 5799999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 185 l~~~i~ 190 (192)
T 2b6h_A 185 LSHELS 190 (192)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 998764
No 4
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=6.9e-29 Score=174.79 Aligned_cols=132 Identities=35% Similarity=0.599 Sum_probs=115.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK 102 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 102 (171)
+||+++|++|||||||++++.+ +....+.+.+||+||++.++.++..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 5899999999999999999986 344568899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510 103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i 169 (171)
.+|+.+..|+..++.....++.|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.+++.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 9999999999999876666789999999999998866655555433 579999999999999999876
Q ss_pred h
Q psy11510 170 S 170 (171)
Q Consensus 170 ~ 170 (171)
.
T Consensus 161 ~ 161 (164)
T 1r8s_A 161 R 161 (164)
T ss_dssp -
T ss_pred h
Confidence 4
No 5
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=6.3e-29 Score=175.33 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=101.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
+.+||+++|++|||||||++++.+ .+...+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 368999999999999999999987 3445678899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
|++++.+|+.+..|+..+......+++|+++|+||+|+.+ .++.++...+. ++||++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Confidence 9999999999999999998765567899999999999975 45666655554 5799999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.+.
T Consensus 161 ~~~ 163 (166)
T 3q72_A 161 QIR 163 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 6
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=8.3e-29 Score=178.17 Aligned_cols=135 Identities=56% Similarity=0.843 Sum_probs=119.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
++.+||+++|++|||||||++++.+ +..+...+.+||+||++++...+..+++++|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 6889999999999999999999986 233567899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
+++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.++
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999876656789999999999998876766665543 579999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 176 ~~i~ 179 (186)
T 1ksh_A 176 DDIS 179 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=1.6e-28 Score=173.81 Aligned_cols=135 Identities=33% Similarity=0.586 Sum_probs=118.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
++.+||+++|++|||||||++++.. +......+.+||+||++.+...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 4679999999999999999999976 334468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
+++.+|+....|+..++......++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.++
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 9999999999999998876555789999999999998866666655443 579999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 165 ~~i~ 168 (171)
T 1upt_A 165 ETLK 168 (171)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8774
No 8
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=6.5e-29 Score=181.26 Aligned_cols=135 Identities=24% Similarity=0.446 Sum_probs=115.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
..+.+||+++|++|||||||++++.+ +..+++.+.+||+||++.++.+++.+++++|++++|+|
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D 101 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD 101 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEE
Confidence 35678999999999999999999986 33345889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------------------Hhhhc
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------------------EKATK 153 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------------------~~sa~ 153 (171)
++++.+|+.+..|+..+++.....++|+++|+||+|+.+.++.+++.+.+ ++||+
T Consensus 102 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 181 (198)
T 1f6b_A 102 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181 (198)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECC
Confidence 99999999999999999876556789999999999998877888777653 46999
Q ss_pred cCCCHHHHHHHHHHHH
Q psy11510 154 VKLNKQSKFQVLLNEV 169 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~i 169 (171)
+|.|++++|+++++.+
T Consensus 182 ~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 182 KRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTBSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998654
No 9
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-28 Score=176.43 Aligned_cols=136 Identities=32% Similarity=0.483 Sum_probs=116.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
.++.+||+++|.+|||||||++++.+ +..++..+.+||++|++++...+..+++++|++++|+|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 36789999999999999999999995 33356889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
++++++|+.+..|+..++......+.|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999999876555789999999999998877777666553 57999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 173 ~~~~~ 177 (187)
T 1zj6_A 173 MSRLK 177 (187)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98764
No 10
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=8.2e-29 Score=177.64 Aligned_cols=136 Identities=20% Similarity=0.266 Sum_probs=120.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.. .+...+.+.+||++|++.+..++..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 56789999999999999999999996 3344567888999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhc-cCCCHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATK-VKLNKQSKFQ 163 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~-~~~~v~~~f~ 163 (171)
+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ .++.+++..+. ++||+ +|.|++++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence 9999999999999999999987755567899999999999976 56777776665 56999 9999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 175 ~l~~~i~ 181 (183)
T 3kkq_A 175 DLVRVIR 181 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 11
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=1.4e-28 Score=177.72 Aligned_cols=136 Identities=28% Similarity=0.511 Sum_probs=119.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 97 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 97 (171)
.++.+||+++|.+|||||||++++.+ +....+.+.+||++|++.+..++..+++++|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 45789999999999999999999986 3345678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHH
Q psy11510 98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~ 164 (171)
|++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 999999999999999999876555789999999999998866666555442 6799999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 179 l~~~~~ 184 (188)
T 1zd9_A 179 LIQHSK 184 (188)
T ss_dssp HHHTCC
T ss_pred HHHHHH
Confidence 988653
No 12
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.6e-29 Score=178.33 Aligned_cols=136 Identities=37% Similarity=0.617 Sum_probs=115.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
+++.+||+++|++|||||||++++.. +..++..+.+||+||++.+...+..+++++|++++|+|
T Consensus 15 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 15 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD 94 (183)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 37899999999999999999999985 33346889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.+
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 95 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999999776555789999999999998877777666553 56999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 175 ~~~~~ 179 (183)
T 1moz_A 175 IDVIK 179 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 13
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=1.6e-28 Score=177.50 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=116.9
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------cccCceEEEEEecCCccchh
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------------------IMTFRFKLNIWDVGGQKSLR 80 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------------------~~~~~~~~~i~d~~g~~~~~ 80 (171)
....+.+||+++|++|||||||++.+.+ .+...+.+.+||+||++.+.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456789999999999999999987764 11234679999999999999
Q ss_pred HHHHHhhhCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------
Q psy11510 81 SYWRNYFESTDGLIWVVDSA------DKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------ 148 (171)
Q Consensus 81 ~~~~~~~~~~~~ii~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------ 148 (171)
.+++.+++++|++++|||++ +..+|+.+..|+..+. ....++|+++|+||+|+.+.++.+++.+++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKF 166 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCS
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCc
Confidence 99999999999999999999 5677888888888772 334789999999999999888888888776
Q ss_pred ---HhhhccCCCHHHHHHHHHHHHh
Q psy11510 149 ---EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 149 ---~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
++||++|.|++++|+.+++.++
T Consensus 167 ~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 167 PVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHHHHHH
Confidence 6699999999999999998875
No 14
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.1e-28 Score=178.96 Aligned_cols=134 Identities=23% Similarity=0.426 Sum_probs=116.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
..+.+||+++|++|||||||++++.+ +..++..+.+||+||++.++.+++.+++++|++++|+|
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 45778999999999999999999986 33345889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------------HhhhccCCCH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------------EKATKVKLNK 158 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------~~sa~~~~~v 158 (171)
++++.+|+.+..|+..+++.....++|+++|+||+|+.+.++.+++.+.+ ++||++|.|+
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCH
Confidence 99999999999999999876556789999999999998877777777653 5699999999
Q ss_pred HHHHHHHHHH
Q psy11510 159 QSKFQVLLNE 168 (171)
Q Consensus 159 ~~~f~~l~~~ 168 (171)
+++|+++++.
T Consensus 180 ~~l~~~l~~~ 189 (190)
T 1m2o_B 180 LEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 15
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=1.7e-28 Score=172.93 Aligned_cols=134 Identities=17% Similarity=0.267 Sum_probs=116.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+..++..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 578999999999999999999986 233467899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l 165 (171)
+|++++.+++.+..|+..+.......++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999998887655456899999999999975 35566666554 46999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 162 ~~~i~ 166 (167)
T 1c1y_A 162 VRQIN 166 (167)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98774
No 16
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=178.60 Aligned_cols=136 Identities=14% Similarity=0.228 Sum_probs=115.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhH-HHHHhhhCCCE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRS-YWRNYFESTDG 92 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ 92 (171)
..+.+||+++|++|||||||++++.+ +++..+.+.+||++|++.+.. +++.+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 56789999999999999999999964 234457889999999998765 78889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence 999999999999999999999887654445899999999999975 46666666554 67999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 180 ~~l~~~i~ 187 (195)
T 3cbq_A 180 EGAVRQIR 187 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 17
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=1.8e-28 Score=172.69 Aligned_cols=135 Identities=21% Similarity=0.322 Sum_probs=115.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
.+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3579999999999999999999986 23345689999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 999999999999999999987765556899999999999965 46666666665 56999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 18
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=1.3e-28 Score=178.56 Aligned_cols=136 Identities=28% Similarity=0.452 Sum_probs=117.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
..+..||+++|..|||||||++++.+ ++...+.+.+||++|++.+..++..+++++|++++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 67889999999999999999999997 344568899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcccc-------CCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccC
Q psy11510 97 VDSADKRRLEDCARELHELLQEERL-------AGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVK 155 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~ 155 (171)
||++++.+|+.+..|+..++..... .++|+++|+||+|+.+....+++.+.+ ++||++|
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 173 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKG 173 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTT
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCc
Confidence 9999999999999999998765332 389999999999998876666655443 5799999
Q ss_pred CCHHHHHHHHHHHHh
Q psy11510 156 LNKQSKFQVLLNEVS 170 (171)
Q Consensus 156 ~~v~~~f~~l~~~i~ 170 (171)
.|++++|+.+++.+.
T Consensus 174 ~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 174 TGVHEGFSWLQETAS 188 (199)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998764
No 19
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.5e-28 Score=176.50 Aligned_cols=134 Identities=33% Similarity=0.488 Sum_probs=116.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
..+.+||+++|..|||||||++++.+ +...+..+.+||++|++++...+..+++++|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 56789999999999999999999986 33356889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.+
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999999876555789999999999998877777766553 57999999999999999
Q ss_pred HHH
Q psy11510 166 LNE 168 (171)
Q Consensus 166 ~~~ 168 (171)
++.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 864
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=9e-29 Score=177.11 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=116.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+..++..+++++|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 34689999999999999999999995 2334478899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++.+++.+..|+..+.+.....++|+++|+||+|+.+ .++.+++.++. ++||++|.|++++|+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999999998776667899999999999965 56677776665 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 163 l~~~~~ 168 (181)
T 3t5g_A 163 IILEAE 168 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 21
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=5.5e-28 Score=171.70 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=107.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--hhHHHHHhhhCCCEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--LRSYWRNYFESTDGL 93 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~~~i 93 (171)
.+.+||+++|++|||||||++++.+ .+...+.+.+||++|++. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4679999999999999999999987 233456789999999988 567788889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ .++.++...+. ++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999999988886654456899999999999976 35666655543 679999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 162 ~l~~~~~ 168 (175)
T 2nzj_A 162 GVVRQLR 168 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=2.9e-28 Score=175.89 Aligned_cols=131 Identities=16% Similarity=0.249 Sum_probs=113.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+.+||+++|++|||||||++++.+ +++..+.+.+||++|++.+. +++++|++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 67899999999999999999999987 33445788999999999887 7888999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC----CCCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE----GALTPEDIKNVS---------EKATKVKLNKQSKF 162 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~----~~~~~~~~~~~~---------~~sa~~~~~v~~~f 162 (171)
|||++++.+|+.+..|+..+.......++|+++|+||+|+. ..++.+++.++. ++||++|.|++++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999999766544689999999999994 256777666655 56999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 172 ~~l~~~i~ 179 (184)
T 3ihw_A 172 QDVAQKVV 179 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 23
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=2.2e-28 Score=173.01 Aligned_cols=133 Identities=15% Similarity=0.232 Sum_probs=110.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhH-HHHHhhhCCCEEEE
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRS-YWRNYFESTDGLIW 95 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii~ 95 (171)
.+||+++|++|||||||++++.+ .+...+.+.+||++|++.+.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999975 344467889999999998876 77788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
|||++++.+++.+..|+..+.......++|+++|+||+|+.+ .++.++...+. ++||++|.|++++|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 999999999999999999998765556899999999999974 56777766655 67999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 162 ~~~i~ 166 (169)
T 3q85_A 162 VRQIR 166 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 24
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=6.3e-28 Score=171.85 Aligned_cols=137 Identities=18% Similarity=0.303 Sum_probs=117.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999986 223346899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQS 160 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~ 160 (171)
++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+ .+..+++.++. ++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 999999999999999989888765322 26799999999999975 56677776665 469999999999
Q ss_pred HHHHHHHHHhC
Q psy11510 161 KFQVLLNEVSN 171 (171)
Q Consensus 161 ~f~~l~~~i~~ 171 (171)
+|+.+++.+++
T Consensus 164 l~~~l~~~~~~ 174 (177)
T 1wms_A 164 AFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=4.8e-28 Score=173.97 Aligned_cols=135 Identities=16% Similarity=0.275 Sum_probs=114.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
++.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999987 33445668899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....+++..+. ++||++|.|++++|+.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999987766567899999999999976 45566655554 569999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 162 ~~~~ 165 (189)
T 4dsu_A 162 REIR 165 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 26
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1.7e-28 Score=177.14 Aligned_cols=135 Identities=33% Similarity=0.563 Sum_probs=118.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 99 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~ 99 (171)
++.+||+++|++|||||||++++.. +......+.+||+||++++...+..+++++|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 6889999999999999999999976 334568899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510 100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~ 166 (171)
+++++++.+..|+..++.....+++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+.++
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 9999999999999998876656789999999999998866666655443 579999999999999998
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 180 ~~i~ 183 (189)
T 2x77_A 180 ERLR 183 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 27
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=174.37 Aligned_cols=135 Identities=26% Similarity=0.419 Sum_probs=117.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
..+.+||+++|..|||||||++++.+ +..++..+.+||++|++.+...+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 45789999999999999999999987 233457899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcccc--CCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERL--AGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSK 161 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~ 161 (171)
+|++++.+++.+..|+..++..... .++|+++|+||+|+.+..+.+++.+.+ ++||++|.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999999999999876544 689999999999998877777776655 4699999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
|+.+++.+
T Consensus 178 ~~~l~~~i 185 (190)
T 2h57_A 178 VDWLQDQI 185 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998765
No 28
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=7e-28 Score=176.08 Aligned_cols=135 Identities=21% Similarity=0.348 Sum_probs=117.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||++|++++..++..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 45679999999999999999999986 222347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKF 162 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f 162 (171)
++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+ .++.+++.++. ++||++|.|++++|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999998886543 46899999999999975 56677766654 56999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 185 ~~l~~~i~ 192 (201)
T 2hup_A 185 LRVATELI 192 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 29
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=7.9e-28 Score=171.31 Aligned_cols=136 Identities=21% Similarity=0.340 Sum_probs=117.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|..|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45689999999999999999999987 223456899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..+++.++. ++||++|.|++++|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998887543 235899999999999965 45666666665 569999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
.+++.+++
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988753
No 30
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=4e-28 Score=173.15 Aligned_cols=136 Identities=17% Similarity=0.329 Sum_probs=118.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|..|||||||++++.+ .++..+.+.+||+||++.+..++..+++++|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 56789999999999999999999986 2233468899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|+|++++.+++.+..|+..++......++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999987665557899999999999975 45666665554 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 166 l~~~~~ 171 (181)
T 2fn4_A 166 LVRAVR 171 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 31
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.8e-28 Score=173.84 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=118.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999986 233457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999987654456899999999999965 45666666654 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 172 l~~~~~ 177 (195)
T 1x3s_A 172 LVEKII 177 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=8.5e-28 Score=171.74 Aligned_cols=135 Identities=21% Similarity=0.313 Sum_probs=116.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.. .+...+.+.+||+||++.+...+..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 56789999999999999999999987 223356899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+.+ .+..+++.++. ++||++|.|++++|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999998886543 36899999999999965 45667776665 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 168 ~l~~~~~ 174 (181)
T 2efe_B 168 EIARRLP 174 (181)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 9987653
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=5.6e-28 Score=170.59 Aligned_cols=135 Identities=18% Similarity=0.280 Sum_probs=116.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
+.+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35689999999999999999999986 233467899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998886543 36899999999999965 45666666654 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 162 ~i~~~~~ 168 (170)
T 1r2q_A 162 AIAKKLP 168 (170)
T ss_dssp HHHHTSC
T ss_pred HHHHHHh
Confidence 9988653
No 34
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=174.06 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=118.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+..++..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 56789999999999999999999986 2334468999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++.+++.+..|+..+.......++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|+.
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999987765556899999999999976 46666666665 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 171 l~~~i~ 176 (206)
T 2bov_A 171 LMREIR 176 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 35
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=3.7e-28 Score=171.83 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=110.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35789999999999999999999986 334557899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+... ..+++|+++|+||+|+.+ .++.+++.++. ++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 9999999999999999998887543 235799999999999975 46666666665 569999999999999
Q ss_pred HHHHHHhC
Q psy11510 164 VLLNEVSN 171 (171)
Q Consensus 164 ~l~~~i~~ 171 (171)
.+++.+.+
T Consensus 162 ~l~~~~~~ 169 (170)
T 1z08_A 162 DLCKRMIE 169 (170)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988763
No 36
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=173.52 Aligned_cols=135 Identities=21% Similarity=0.342 Sum_probs=116.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+..++..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 45689999999999999999999997 233447899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998888543 235899999999999975 45555665554 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 172 ~l~~~i~ 178 (196)
T 3tkl_A 172 TMAAEIK 178 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 37
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=5e-28 Score=175.43 Aligned_cols=137 Identities=13% Similarity=0.220 Sum_probs=114.5
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
....+.+||+++|.+|||||||++++.+ .++..+.+.+||++|++.+..++..+++++|+
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3366789999999999999999999997 23345678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH---------HhhhccCCCH
Q psy11510 93 LIWVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS---------EKATKVKLNK 158 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~---------~~sa~~~~~v 158 (171)
+++|||++++.+|+.+ ..|+..+... .+++|+++|+||+|+.+ .+..+++.++. ++||++|.|+
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 9999999999999997 5666666432 46899999999999964 36666666554 5699999999
Q ss_pred HHHHHHHHHHHhC
Q psy11510 159 QSKFQVLLNEVSN 171 (171)
Q Consensus 159 ~~~f~~l~~~i~~ 171 (171)
+++|+.+++.+++
T Consensus 176 ~~l~~~l~~~i~~ 188 (194)
T 3reg_A 176 NEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 38
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=178.47 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=113.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|.+|||||||++++.+ .+...+.+.+||+||++.+..++..+++++|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 46789999999999999999999997 3345678899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999997765567899999999999974 45666665554 6799999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 181 l~~~i~ 186 (201)
T 3oes_A 181 VIQEIA 186 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 39
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=8.9e-28 Score=172.15 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=117.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|+.|||||||++++.+ .+...+.+.+||+||++.+..++..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 45789999999999999999999986 2333468999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|||++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..+++.++. ++||++|.|++++|+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999999987765556899999999999975 46666666665 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 175 l~~~i~ 180 (187)
T 2a9k_A 175 LMREIR 180 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 40
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.8e-28 Score=175.76 Aligned_cols=135 Identities=20% Similarity=0.327 Sum_probs=117.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|.+|||||||++++.+ .....+.+.+||++|++.+..++..+++++|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 45789999999999999999999997 344678899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999998888553 346899999999999965 45666665554 669999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 179 ~l~~~i~ 185 (191)
T 3dz8_A 179 RLVDAIC 185 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 41
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.8e-28 Score=176.19 Aligned_cols=135 Identities=23% Similarity=0.301 Sum_probs=116.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||++|++++..++..+++++|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 55689999999999999999999986 223346899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998888543 235799999999999974 46666666554 679999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 182 ~l~~~i~ 188 (201)
T 2ew1_A 182 DLACRLI 188 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=5.6e-28 Score=174.87 Aligned_cols=135 Identities=23% Similarity=0.345 Sum_probs=117.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|+.|||||||++++.+ .+...+.+.+||++|++.+..++..+++++|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 56789999999999999999999986 233457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|+
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888653 236899999999999975 56666666654 579999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 177 ~l~~~i~ 183 (191)
T 2a5j_A 177 NTAKEIY 183 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 43
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=9.9e-28 Score=172.24 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=116.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45689999999999999999999986 223347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+ .++.++...+. ++||++|.|++++|+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999988875432 36899999999999964 46666666554 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 166 ~l~~~~~ 172 (186)
T 2bme_A 166 QCARKIL 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 44
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=5.7e-28 Score=169.89 Aligned_cols=134 Identities=16% Similarity=0.271 Sum_probs=115.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+.+||+++|++|||||||++++.+ .+.....+.+||+||++.+..++..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 568999999999999999999986 233346689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 99999999999999999887765557899999999999864 45566655554 569999999999999998
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 162 ~~~~ 165 (167)
T 1kao_A 162 RQMN 165 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
No 45
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=3.8e-28 Score=174.13 Aligned_cols=135 Identities=20% Similarity=0.383 Sum_probs=92.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35689999999999999999999987 223347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+|+.+..|+..+... ..+++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888653 235899999999999976 45666666665 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 164 ~l~~~i~ 170 (183)
T 2fu5_C 164 TLARDIK 170 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 46
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.2e-27 Score=168.96 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=114.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 578999999999999999999987 23345689999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-----CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-----ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
|+|++++.+++.+..|+..+.... .++.|+++|+||+|+.+ .+..++..++. ++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999998886543 36899999999999864 35555555544 56999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 161 ~~l~~~i~ 168 (170)
T 1ek0_A 161 LGIGEKIP 168 (170)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHHh
Confidence 99987654
No 47
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=174.62 Aligned_cols=135 Identities=23% Similarity=0.370 Sum_probs=115.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|..|||||||++++.+ .+...+.+.+||++|++.+...+..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 55689999999999999999999987 223457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKF 162 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f 162 (171)
++|+|++++.+++.+..|+..+.. ....++|+++|+||+|+.+ .+..+++.++. ++||++|.|++++|
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999888777643 3345899999999999975 45666665554 56999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 182 ~~l~~~i~ 189 (192)
T 2il1_A 182 LKLVDDIL 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 48
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=1.7e-27 Score=168.32 Aligned_cols=134 Identities=20% Similarity=0.262 Sum_probs=115.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.+.+||+++|++|||||||++++.+ .......+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999987 2334577899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|+|++++.+++.+..|+..+... ..++.|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 999999999999999998888553 346899999999999975 45566666654 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 163 i~~~i~ 168 (170)
T 1z0j_A 163 ISRRIP 168 (170)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 998764
No 49
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=4.3e-28 Score=178.99 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=114.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.. .+...+.+.+||++|++++..++..+++++|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 56789999999999999999999986 3445678999999999999999999999999999
Q ss_pred EEEeCCChhhHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLED-CARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~ 150 (171)
+|||++++.+|+. +..|+..+... .+++|+++|+||+|+.+ .++.+++..+. ++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 9999999999998 67888888554 36899999999999964 36666666554 67
Q ss_pred hhccCCC-HHHHHHHHHHHHhC
Q psy11510 151 ATKVKLN-KQSKFQVLLNEVSN 171 (171)
Q Consensus 151 sa~~~~~-v~~~f~~l~~~i~~ 171 (171)
||++|.| ++++|+.+++.+++
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC
T ss_pred ccCCCcccHHHHHHHHHHHHhc
Confidence 9999998 99999999988753
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.6e-27 Score=170.13 Aligned_cols=135 Identities=24% Similarity=0.376 Sum_probs=108.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
..+.+||+++|.+|||||||++++.+ .++..+.+.+||+||++.+...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 56789999999999999999999986 22334689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988886543 26899999999999975 34566665554 56999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 166 ~~l~~~~~ 173 (180)
T 2g6b_A 166 TAIAKELK 173 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=8.9e-28 Score=173.43 Aligned_cols=136 Identities=18% Similarity=0.298 Sum_probs=113.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh-HHHHHhhhCCCE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR-SYWRNYFESTDG 92 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~ 92 (171)
..+.+||+++|.+|||||||++++.+ .+...+.+.+||++|++++. .++..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 45789999999999999999999986 22335789999999999998 889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC---CCHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK---LNKQ 159 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~---~~v~ 159 (171)
+++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..++...+. ++||++| .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999987765457899999999999965 45666666654 5699999 9999
Q ss_pred HHHHHHHHHHh
Q psy11510 160 SKFQVLLNEVS 170 (171)
Q Consensus 160 ~~f~~l~~~i~ 170 (171)
++|+.+++.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=1.7e-27 Score=169.76 Aligned_cols=137 Identities=19% Similarity=0.238 Sum_probs=114.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cc--c-CceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IM--T-FRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~--~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
..+.+||+++|++|||||||++++.+ +. . ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999987 11 1 24789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccc-cCCCe-EEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEER-LAGAT-LLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQS 160 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p-~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~ 160 (171)
+++|+|++++.+++.+..|+..+..... ..+.| +++|+||+|+.+ .++.+++..+. ++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999988888754311 12444 899999999975 45666666554 569999999999
Q ss_pred HHHHHHHHHhC
Q psy11510 161 KFQVLLNEVSN 171 (171)
Q Consensus 161 ~f~~l~~~i~~ 171 (171)
+|+.+++.+++
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 53
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=2.5e-27 Score=170.70 Aligned_cols=136 Identities=18% Similarity=0.317 Sum_probs=117.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cccC---------ceEEEEEecCCccchhHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IMTF---------RFKLNIWDVGGQKSLRSYW 83 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~---------~~~~~i~d~~g~~~~~~~~ 83 (171)
..+.+||+++|++|||||||++++.+ .... .+.+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 56789999999999999999999986 1111 4689999999999999999
Q ss_pred HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhc
Q psy11510 84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATK 153 (171)
Q Consensus 84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~ 153 (171)
..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..+++.++. ++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999999887655446899999999999976 56666666655 56999
Q ss_pred cCCCHHHHHHHHHHHHh
Q psy11510 154 VKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~i~ 170 (171)
+|.|++++|+.+++.+.
T Consensus 168 ~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIM 184 (195)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 54
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=6.7e-28 Score=170.02 Aligned_cols=134 Identities=16% Similarity=0.294 Sum_probs=115.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+..++..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999987 2233568999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998886543 6899999999999965 45666666655 5699999999999999
Q ss_pred HHHHHhC
Q psy11510 165 LLNEVSN 171 (171)
Q Consensus 165 l~~~i~~ 171 (171)
+++.+++
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 55
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=170.21 Aligned_cols=134 Identities=24% Similarity=0.365 Sum_probs=116.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+...+..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 56789999999999999999999987 223347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+... .+++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999999988654 36899999999999976 45556555554 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+.+.+.
T Consensus 164 ~l~~~~~ 170 (181)
T 3tw8_B 164 CITELVL 170 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 56
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=4.5e-27 Score=164.95 Aligned_cols=134 Identities=15% Similarity=0.277 Sum_probs=115.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 468999999999999999999986 223456789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
+|++++.+++.+..|+..+.......++|+++|+||+|+.+ ....+++.++. ++||++|.|++++|+.+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998887654445899999999999976 45566665554 5699999999999999998
Q ss_pred HHh
Q psy11510 168 EVS 170 (171)
Q Consensus 168 ~i~ 170 (171)
.+.
T Consensus 162 ~~~ 164 (166)
T 2ce2_X 162 EIR 164 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 57
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=7.5e-28 Score=173.96 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=111.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|.+|||||||++++.+ .+...+.+.+||++|++.+..+ ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 56789999999999999999999986 2344578899999999998875 67899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhh-ccCCCHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKAT-KVKLNKQSK 161 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa-~~~~~v~~~ 161 (171)
+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+ .++.+++.++. ++|| ++|.|++++
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence 99999999999999999988865422 25899999999999965 46667666665 6699 899999999
Q ss_pred HHHHHHHHhC
Q psy11510 162 FQVLLNEVSN 171 (171)
Q Consensus 162 f~~l~~~i~~ 171 (171)
|+.+++.+.+
T Consensus 177 f~~l~~~i~~ 186 (187)
T 3c5c_A 177 FHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 58
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.5e-27 Score=171.59 Aligned_cols=135 Identities=12% Similarity=0.169 Sum_probs=115.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|+.|||||||++++.+ .+...+.+.+||++|++++..++..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 45789999999999999999999986 2334578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~ 150 (171)
+|||++++.+|+.+. .|+..+... .+++|+++|+||+|+.+ .++.++..++. ++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999987 677777543 35899999999999975 35555555543 56
Q ss_pred hhccCCCHHHHHHHHHHHHhC
Q psy11510 151 ATKVKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 151 sa~~~~~v~~~f~~l~~~i~~ 171 (171)
||++|.|++++|+.+++.++.
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998763
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-27 Score=172.47 Aligned_cols=135 Identities=20% Similarity=0.264 Sum_probs=117.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|.+|||||||++++.+ .+.....+.+||+||++++...+..+++++|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 56789999999999999999999986 233567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+... ..+++|+++|+||+|+.+ .+..+++.++. ++||++|.|++++|+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 9999999999999999998888553 245899999999999974 56677777765 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 179 ~l~~~i~ 185 (192)
T 2fg5_A 179 GISRQIP 185 (192)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 9988653
No 60
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=173.82 Aligned_cols=135 Identities=19% Similarity=0.263 Sum_probs=111.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 56789999999999999999999986 233457799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--------CCCCHHHHHHHH--------HhhhccCCC
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE--------GALTPEDIKNVS--------EKATKVKLN 157 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~--------~~~~~~~~~~~~--------~~sa~~~~~ 157 (171)
++|||++++.+++.+..|+..+... ...++|+++|+||+|+. ..+..++...+. ++||++|.|
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999988877443 33579999999999985 245566655544 679999999
Q ss_pred HHHHHHHHHHHHh
Q psy11510 158 KQSKFQVLLNEVS 170 (171)
Q Consensus 158 v~~~f~~l~~~i~ 170 (171)
++++|+.+++.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 61
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=2.5e-27 Score=169.15 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=107.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
.+.+||+++|++|||||||++++.+ .++..+.+.+||++|+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 5789999999999999999999986 233457789999999987 4678889999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCC----CCCCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQE--ERLAGATLLVFANKQDIE----GALTPEDIKNVS---------EKATKVKLNKQSK 161 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~Dl~----~~~~~~~~~~~~---------~~sa~~~~~v~~~ 161 (171)
||++++.+|+.+..|+..+... ...+++|+++|+||+|+. ..++.+++.++. ++||++|.|++++
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence 9999999999999876554332 223689999999999994 246666666554 5699999999999
Q ss_pred HHHHHHHHh
Q psy11510 162 FQVLLNEVS 170 (171)
Q Consensus 162 f~~l~~~i~ 170 (171)
|+.+++.++
T Consensus 160 f~~l~~~~~ 168 (178)
T 2iwr_A 160 FQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
No 62
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=6.9e-28 Score=176.47 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=110.9
Q ss_pred cCCCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCC
Q psy11510 31 HRPQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFEST 90 (171)
Q Consensus 31 ~~~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 90 (171)
++....+.+||+++|.+|||||||++++.. .++..+.+.+||+||++.+...+..+++++
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 344467889999999999999999999986 344567788999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH-------
Q psy11510 91 DGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS------- 148 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~------- 148 (171)
|++++|||++++.+++.+. .|+..+.... +++|+++|+||+|+.+. ++.++...+.
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 9999999999999999987 6776664432 68999999999998653 4444544443
Q ss_pred --HhhhccCCCHHHHHHHHHHHHh
Q psy11510 149 --EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 149 --~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
++||++|.|++++|+.+++.++
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAVL 204 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999998753
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.7e-27 Score=174.07 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=111.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccc-hhHHHHHhhhCCC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKS-LRSYWRNYFESTD 91 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~ 91 (171)
..+.+||+++|++|||||||++++.+ +++..+.+.+||++|++. +..+.+.+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 45679999999999999999999974 223345678999999887 5667778889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHH
Q psy11510 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSK 161 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~ 161 (171)
++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ .+..++...+. ++||++|.||+++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999988876543346899999999999964 45666554432 6799999999999
Q ss_pred HHHHHHHHh
Q psy11510 162 FQVLLNEVS 170 (171)
Q Consensus 162 f~~l~~~i~ 170 (171)
|+.+++.+.
T Consensus 194 f~~l~~~i~ 202 (211)
T 2g3y_A 194 FEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998763
No 64
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.5e-27 Score=173.28 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=115.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|.+|||||||++++.+ .+...+.+.+||++|++. ...+..+++.+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 46789999999999999999999986 233457799999999988 788999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCC-CHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKL-NKQSKFQ 163 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~-~v~~~f~ 163 (171)
+|||++++.+++.+..|+..+.......++|+++|+||+|+.+ .++.+++.++. ++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999988887655456899999999999975 46666666554 56999999 9999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 184 ~l~~~i~ 190 (196)
T 2atv_A 184 ELCREVR 190 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=6e-27 Score=170.69 Aligned_cols=134 Identities=21% Similarity=0.340 Sum_probs=115.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4679999999999999999999987 2234578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|+.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999999998888543 245899999999999976 45566665554 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 165 l~~~i~ 170 (203)
T 1zbd_A 165 LVDVIC 170 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=2.4e-27 Score=167.48 Aligned_cols=133 Identities=24% Similarity=0.379 Sum_probs=114.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999986 23345789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~ 166 (171)
|+|++++.+++.+..|+..+.... .+++|+++|+||+|+.+ ....++..++. ++||++|.|++++|+.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999988886542 35899999999999965 45566655554 569999999999999998
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.+.
T Consensus 161 ~~~~ 164 (170)
T 1g16_A 161 KLIQ 164 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=2.3e-27 Score=169.35 Aligned_cols=136 Identities=17% Similarity=0.290 Sum_probs=105.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
..+.+||+++|++|||||||++++.+ .+ .....+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45789999999999999999999987 22 335789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC---CCCHHHHHHHH---------HhhhccCCC
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG---ALTPEDIKNVS---------EKATKVKLN 157 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~---------~~sa~~~~~ 157 (171)
+++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+ .+..+++.++. ++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999888865432 26899999999999954 35666666655 459999999
Q ss_pred HHHHHHHHHHHHh
Q psy11510 158 KQSKFQVLLNEVS 170 (171)
Q Consensus 158 v~~~f~~l~~~i~ 170 (171)
++++|+.+++.++
T Consensus 165 i~~l~~~l~~~~~ 177 (182)
T 1ky3_A 165 VDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998775
No 68
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=2e-27 Score=175.08 Aligned_cols=136 Identities=16% Similarity=0.312 Sum_probs=116.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccC----------ceEEEEEecCCccchhHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTF----------RFKLNIWDVGGQKSLRSYW 83 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~----------~~~~~i~d~~g~~~~~~~~ 83 (171)
..+.+||+++|.+|||||||++++.+ .+.. .+.+.+||++|++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 45689999999999999999999986 1122 5789999999999999999
Q ss_pred HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhc
Q psy11510 84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATK 153 (171)
Q Consensus 84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~ 153 (171)
..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..+++.++. ++||+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 999999999999999999999999999988876544346899999999999976 45666666655 56999
Q ss_pred cCCCHHHHHHHHHHHHh
Q psy11510 154 VKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 154 ~~~~v~~~f~~l~~~i~ 170 (171)
+|.|++++|+.+++.+.
T Consensus 182 ~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIM 198 (217)
T ss_dssp TTBTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 69
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=171.21 Aligned_cols=135 Identities=23% Similarity=0.329 Sum_probs=116.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|.+|||||||++++.+ .....+.+.+||+||++++..++..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 56689999999999999999999987 223456789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|+
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888653 246899999999999975 45666666654 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.++
T Consensus 181 ~l~~~i~ 187 (193)
T 2oil_A 181 TVLKEIF 187 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=2e-27 Score=169.19 Aligned_cols=135 Identities=16% Similarity=0.306 Sum_probs=114.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
+.+.+||+++|+.|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 55779999999999999999999986 223346899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+ .+..++..... ++||++|.|++++|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998886532 36899999999999965 45566655554 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 170 ~l~~~~~ 176 (179)
T 2y8e_A 170 RVAAALP 176 (179)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9987653
No 71
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=1.8e-27 Score=171.19 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=113.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+..+++.+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 45789999999999999999999987 2344678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~ 150 (171)
+|||++++.+|+.+ ..|+..+... .+++|+++|+||+|+.+ .++.+++.++. ++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 99999999999998 6777777443 36899999999999973 35666655554 56
Q ss_pred hhc-cCCCHHHHHHHHHHHHhC
Q psy11510 151 ATK-VKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 151 sa~-~~~~v~~~f~~l~~~i~~ 171 (171)
||+ ++.|++++|+.+++.+++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 998 689999999999998864
No 72
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=3.1e-27 Score=170.57 Aligned_cols=135 Identities=22% Similarity=0.354 Sum_probs=115.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|.+|||||||++++.+ .....+.+.+||++|++.+...+..+++++|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 45679999999999999999999987 223457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..+++.++. ++||++|.|++++|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999998888543 245899999999999975 45566666554 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 178 ~l~~~i~ 184 (189)
T 2gf9_A 178 RLVDVIC 184 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=4.9e-27 Score=169.40 Aligned_cols=136 Identities=14% Similarity=0.230 Sum_probs=105.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|..|||||||++++.+ .+...+.+.+||++|++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 55779999999999999999999986 2233467899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
+|+|+++..+++.+..|+..+.......++|+++|+||+|+.+ ....+++.++. ++||++|.|++++|+.+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988886554445899999999999976 45666666665 56999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 178 ~~~~~ 182 (190)
T 3con_A 178 VREIR 182 (190)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 74
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=173.38 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=116.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|..|||||||++++.+ .+...+.+.+||++|++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46789999999999999999999986 223347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+++.+..|+..+.... .+++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988885532 36899999999999964 46666666554 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.++
T Consensus 181 ~l~~~i~ 187 (200)
T 2o52_A 181 KCARTIL 187 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 75
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=5.1e-27 Score=171.58 Aligned_cols=135 Identities=21% Similarity=0.321 Sum_probs=116.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45689999999999999999999986 223346899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+++.+..|+..+.... .++.|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988885432 45899999999999976 45666666554 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 164 ~l~~~i~ 170 (206)
T 2bcg_Y 164 TMARQIK 170 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 76
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=5e-27 Score=183.95 Aligned_cols=137 Identities=34% Similarity=0.576 Sum_probs=117.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
.++.+||+++|.+|||||||++++.. +....+.+.+|||||++.+..++..+++.+|++++|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 45678999999999999999999987 44567889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
++++.+|+.+..|+..++.....+++|+++|+||+|+.+....+++.... ++||++|.|++++|+.+
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999887766799999999999998877776666654 56999999999999999
Q ss_pred HHHHhC
Q psy11510 166 LNEVSN 171 (171)
Q Consensus 166 ~~~i~~ 171 (171)
++.+.+
T Consensus 322 ~~~l~~ 327 (329)
T 3o47_A 322 SNQLRN 327 (329)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 988753
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=1.4e-26 Score=167.76 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=113.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCc----------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFR---------------------------- 65 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~---------------------------- 65 (171)
..+.+||+++|++|||||||++++.+ .+...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 35689999999999999999999987 11112
Q ss_pred ---------eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 66 ---------FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 66 ---------~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|+.
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcc
Confidence 789999999999999999999999999999999999999999999998886542 49999999999954
Q ss_pred C-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 137 G-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 137 ~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
. .+..+++.+++ ++||++|.|++++|+.+++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3 56677777765 5699999999999999998765
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.9e-27 Score=169.83 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=113.3
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
+...+.+||+++|.+|||||||++++.+ .+...+.+.+||+||++.+..++..+++++|+
T Consensus 3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 3456789999999999999999999986 22335678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEER-LAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++|||++++.+++.+..|+..+..... .+++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 9999999999999998888766644321 25789999999999976 45555555543 56999999999999
Q ss_pred HHHHHHH
Q psy11510 163 QVLLNEV 169 (171)
Q Consensus 163 ~~l~~~i 169 (171)
+.+++.+
T Consensus 163 ~~l~~~~ 169 (199)
T 2gf0_A 163 QELLTLE 169 (199)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998865
No 79
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-27 Score=175.24 Aligned_cols=135 Identities=24% Similarity=0.365 Sum_probs=113.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++++..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 45689999999999999999999987 223347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+ .++.+++..+. ++||++|.|++++|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998885542 35899999999999975 46666666665 569999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 169 ~l~~~i~ 175 (223)
T 3cpj_B 169 ELINTIY 175 (223)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998875
No 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=6.2e-27 Score=170.83 Aligned_cols=136 Identities=18% Similarity=0.287 Sum_probs=114.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||+||++.+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45789999999999999999999987 233457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQS 160 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~ 160 (171)
++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+ ....+++..+. ++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 999999999999999999888765432 24789999999999975 45566666554 469999999999
Q ss_pred HHHHHHHHHh
Q psy11510 161 KFQVLLNEVS 170 (171)
Q Consensus 161 ~f~~l~~~i~ 170 (171)
+|+.+++.+.
T Consensus 165 l~~~l~~~~~ 174 (207)
T 1vg8_A 165 AFQTIARNAL 174 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=2.5e-27 Score=169.41 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=107.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
.++.+||+++|++|||||||++++.. .++..+.+.+||+||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 35689999999999999999999986 2334566789999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC------------CCHHHHHHHH---------Hhhh
Q psy11510 95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA------------LTPEDIKNVS---------EKAT 152 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~---------~~sa 152 (171)
+|+|++++.+++.+. .|+..+... .+++|+++|+||+|+.+. +..++..++. ++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 999999999999987 677777443 258999999999998652 2444444443 5699
Q ss_pred ccCCCHHHHHHHHHHHHhC
Q psy11510 153 KVKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 153 ~~~~~v~~~f~~l~~~i~~ 171 (171)
++|.|++++|+.+++.+++
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 82
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=7.7e-27 Score=170.33 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=112.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
....+||+++|.+|||||||++++.+ .++..+.+.+||+||++.+..++..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35689999999999999999999987 2234568999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~ 150 (171)
+|||++++.+++.+ ..|+..+... .+++|+++|+||+|+.+. +..++...+. ++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 99999999999998 5666666432 358999999999999753 4455554443 56
Q ss_pred hhccCCCHHHHHHHHHHHHhC
Q psy11510 151 ATKVKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 151 sa~~~~~v~~~f~~l~~~i~~ 171 (171)
||++|.|++++|+.+++.+++
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998864
No 83
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=171.10 Aligned_cols=134 Identities=13% Similarity=0.171 Sum_probs=111.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|.+|||||||++++.+ .++..+.+.+||++|++++..++..+++++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 66789999999999999999999986 2233467889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~ 150 (171)
+|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+ .+..++...+. ++
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 999999999999987 687777543 25899999999999864 34555554443 66
Q ss_pred hhccCCCHHHHHHHHHHHHh
Q psy11510 151 ATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 151 sa~~~~~v~~~f~~l~~~i~ 170 (171)
||++|.|++++|+.+++.++
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998775
No 84
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=4.9e-27 Score=168.30 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=111.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
.+.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 4679999999999999999999986 23445778899999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510 96 VVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA 151 (171)
Q Consensus 96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s 151 (171)
|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+ .++.++...+. ++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999987 677777543 24899999999999864 23444444433 569
Q ss_pred hccCCCHHHHHHHHHHHHhC
Q psy11510 152 TKVKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~~i~~ 171 (171)
|++|.|++++|+.+++.+++
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999988753
No 85
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=4.3e-27 Score=172.66 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=112.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.+ .+...+.+.+||++|++.+..++..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 45789999999999999999999987 2345688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~ 150 (171)
+|||++++.+|+.+ ..|+..+... .++.|+++|+||+|+.+ .++.+++.++. ++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999998 6787777443 35899999999999963 35556555544 56
Q ss_pred hhc-cCCCHHHHHHHHHHHHh
Q psy11510 151 ATK-VKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 151 sa~-~~~~v~~~f~~l~~~i~ 170 (171)
||+ ++.|++++|+.+++.++
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHh
Confidence 998 68999999999999876
No 86
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=5.8e-27 Score=172.74 Aligned_cols=134 Identities=17% Similarity=0.205 Sum_probs=98.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||++|++.+..++..+++++|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45689999999999999999999987 2334568999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~ 150 (171)
+|||++++.+|+.+. .|+..+... .+++|+++|+||+|+... ++.++..++. ++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999987 677777443 368999999999999752 4444544443 66
Q ss_pred hhccCCCHHHHHHHHHHHHh
Q psy11510 151 ATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 151 sa~~~~~v~~~f~~l~~~i~ 170 (171)
||++|.|++++|+.+++.++
T Consensus 189 SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=2.5e-27 Score=175.23 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=114.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|.+|||||||++++.. .+...+.+.+||++|++.+..++..+++++|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 56789999999999999999999664 334567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
++|||++++.+++.+..|+..+... .+++|+++|+||+|+.+....++...+. ++||++|.|++++|+.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999998764 3589999999999997633222322222 67999999999999999
Q ss_pred HHHHh
Q psy11510 166 LNEVS 170 (171)
Q Consensus 166 ~~~i~ 170 (171)
++.+.
T Consensus 170 ~~~l~ 174 (221)
T 3gj0_A 170 ARKLI 174 (221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 88
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=6e-27 Score=171.88 Aligned_cols=134 Identities=17% Similarity=0.232 Sum_probs=111.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
..+.+||+++|++|||||||++++.. .++..+.+.+||+||++.+..++..+++++|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 35789999999999999999999986 2334578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC----------CCHHHHHHHH---------Hhhhcc
Q psy11510 95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA----------LTPEDIKNVS---------EKATKV 154 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~---------~~sa~~ 154 (171)
+|||++++.+|+.+. .|+..+... .+++|+++|+||+|+.+. ++.+++.++. ++||++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 999999999999987 777777543 258999999999998653 2455554443 569999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy11510 155 KLNKQSKFQVLLNEVS 170 (171)
Q Consensus 155 ~~~v~~~f~~l~~~i~ 170 (171)
|.|++++|+.+++.+.
T Consensus 164 g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVL 179 (212)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998875
No 89
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.6e-27 Score=165.03 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=110.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+.+||+++|++|||||||++++.+ .+.....+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 578999999999999999999987 223346789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l 165 (171)
+|++++.+++.+..|+..+.+.. ..+++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence 99999999999888887775432 235799999999999865 45555554443 56999999999999999
Q ss_pred HHHH
Q psy11510 166 LNEV 169 (171)
Q Consensus 166 ~~~i 169 (171)
++.+
T Consensus 162 ~~~~ 165 (172)
T 2erx_A 162 LNLE 165 (172)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8754
No 90
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=5.2e-27 Score=171.09 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=92.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-----------------------cccC--ceEEEEEecCCccchhHHHHHhhhCC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------IMTF--RFKLNIWDVGGQKSLRSYWRNYFEST 90 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~ 90 (171)
.+.+||+++|++|||||||++++.+ .+.. .+.+.+||+||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 4679999999999999999999876 2222 67899999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC---CCCHHHHHHHH--------Hhhhcc-CC
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG---ALTPEDIKNVS--------EKATKV-KL 156 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~--------~~sa~~-~~ 156 (171)
|++++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+ .++.+++.++. ++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999998866433 25899999999999975 46667776665 569999 99
Q ss_pred CHHHHHHHHHHHHh
Q psy11510 157 NKQSKFQVLLNEVS 170 (171)
Q Consensus 157 ~v~~~f~~l~~~i~ 170 (171)
|++++|+.+++.+.
T Consensus 178 gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 178 DADAPFLSIATTFY 191 (208)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 91
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=6.8e-27 Score=172.30 Aligned_cols=135 Identities=21% Similarity=0.231 Sum_probs=113.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDG 92 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 92 (171)
....+||+++|.+|||||||++++.+ . ....+.+.+||++|++.+..++..++.++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 56789999999999999999999995 1 1223789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+ .+..+++..+. ++||++|.|++++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999988888543 234699999999999976 45666665554 67999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 167 ~~l~~~~~ 174 (218)
T 4djt_A 167 LHLARIFT 174 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998775
No 92
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=2.5e-26 Score=166.81 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=108.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccc-hhHHHHHhhhCCCE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKS-LRSYWRNYFESTDG 92 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 92 (171)
.+.+||+++|++|||||||++++.+ +++..+.+.+||++|++. ++.+++.+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4679999999999999999999974 233455678999999876 45567788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
+++|||++++.+|+.+..|+..+......+++|+++|+||+|+.. .+..++...+. ++||++|.|++++|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence 999999999999999999888776543345899999999999964 45555544332 67999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+++.+.
T Consensus 164 ~~l~~~~~ 171 (192)
T 2cjw_A 164 EGIVRQVR 171 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 93
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.2e-26 Score=168.61 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=112.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
....+||+++|.+|||||||++++.+ .+...+.+.+||+||++.+...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 35689999999999999999999987 2333568999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hh
Q psy11510 95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EK 150 (171)
Q Consensus 95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~ 150 (171)
+|||++++.+++.+ ..|+..+... .+++|+++|+||+|+.+. +..++...+. ++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998 5676666442 358999999999999653 4444444433 56
Q ss_pred hhccCCCHHHHHHHHHHHHhC
Q psy11510 151 ATKVKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 151 sa~~~~~v~~~f~~l~~~i~~ 171 (171)
||++|.|++++|+.+++.+++
T Consensus 180 SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988763
No 94
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=3.1e-26 Score=167.82 Aligned_cols=135 Identities=23% Similarity=0.371 Sum_probs=112.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|++|||||||++++.+ .++..+.+.+||+||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999986 222347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.. ....++...+. ++||++|.|++++|+.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988886542 35799999999999964 45555555554 5699999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+++.+.
T Consensus 176 l~~~~~ 181 (213)
T 3cph_A 176 LAKLIQ 181 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 95
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=5.9e-26 Score=186.40 Aligned_cols=135 Identities=33% Similarity=0.606 Sum_probs=121.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d 98 (171)
..+.+||+++|.+|||||||++++.+ +...++.+.+|||+|++.+..++..+++++|++++|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 45679999999999999999999987 45567899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL 165 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l 165 (171)
++++.+|+.+..|+..+++.....++|+++|+||+|+.+..+.+++.+.. ++||++|.|++++|+++
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999887666799999999999998877777666553 67999999999999999
Q ss_pred HHHH
Q psy11510 166 LNEV 169 (171)
Q Consensus 166 ~~~i 169 (171)
.+.+
T Consensus 479 ~~~~ 482 (497)
T 3lvq_E 479 TSNY 482 (497)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=6.2e-26 Score=164.91 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=105.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhHHH---HHhhhCC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRSYW---RNYFEST 90 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~~~---~~~~~~~ 90 (171)
..+.+||+++|+.|||||||++++.+ + .+..+.+.+||++|+++|.... ..+++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 96 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT 96 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence 67889999999999999999998887 1 2456889999999999987765 8999999
Q ss_pred CEEEEEEeCCCh--hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------CCHHHHHHHH-----------
Q psy11510 91 DGLIWVVDSADK--RRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------LTPEDIKNVS----------- 148 (171)
Q Consensus 91 ~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~----------- 148 (171)
|++++|||+++. ++++.+..|+..+... .+++|+++|+||+|+.+. +..++..++.
T Consensus 97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (196)
T 3llu_A 97 GALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174 (196)
T ss_dssp SEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence 999999999997 6777777777776432 368999999999998651 1222222222
Q ss_pred -HhhhccCCCHHHHHHHHHHHHh
Q psy11510 149 -EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 149 -~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
++||++ .|++++|+.+++.++
T Consensus 175 ~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 175 YLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp EEECTTS-THHHHHHHHHHHHTC
T ss_pred EEEEech-hhHHHHHHHHHHHhC
Confidence 569999 999999999998764
No 97
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.93 E-value=3.2e-25 Score=162.89 Aligned_cols=135 Identities=25% Similarity=0.258 Sum_probs=102.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------cccC-ceEEEEEecCCccchhH-HHHHhhhCCCEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------IMTF-RFKLNIWDVGGQKSLRS-YWRNYFESTDGLI 94 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------~~~~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii 94 (171)
.++.+||+++|++|||||||++++.+ .+.. .+.+.+||+||++++.. +++.+++++|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 45789999999999999999999986 2222 67899999999999998 8999999999999
Q ss_pred EEEeCCChh-hHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCCHHHHHH-------------------------
Q psy11510 95 WVVDSADKR-RLEDCARELHELLQE--ERLAGATLLVFANKQDIEGALTPEDIKN------------------------- 146 (171)
Q Consensus 95 ~v~d~~~~~-s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~~~------------------------- 146 (171)
+|+|+++.. ++.....++..++.. ....++|+++|+||+|+.+....+++.+
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999854 566666666665543 1235799999999999987544332211
Q ss_pred ----------------------HHHhhhccC------CCHHHHHHHHHHHH
Q psy11510 147 ----------------------VSEKATKVK------LNKQSKFQVLLNEV 169 (171)
Q Consensus 147 ----------------------~~~~sa~~~------~~v~~~f~~l~~~i 169 (171)
+.++||++| .|++++|+++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 235799999 99999999998753
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=1e-27 Score=174.70 Aligned_cols=135 Identities=21% Similarity=0.342 Sum_probs=104.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..+.+||+++|.+|||||||++++.+ .+...+.+.+||++|++.+..++..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 45689999999999999999999987 233447899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+ .+..++...+. ++||++|.|++++|+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999998888543 345899999999999965 23323333332 679999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+++.+.
T Consensus 189 ~l~~~l~ 195 (199)
T 3l0i_B 189 TMAAEIK 195 (199)
T ss_dssp HHTTTTT
T ss_pred HHHHHHH
Confidence 9987664
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.9e-27 Score=173.73 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=110.6
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
..++.+||+++|.+|||||||++++.+ .++..+.+.+||+||++++...+..+++++|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 357889999999999999999999886 334456788999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHH---------HHHH
Q psy11510 94 IWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIK---------NVSE 149 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~---------~~~~ 149 (171)
++|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+. +..++.. .+.+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999999987 666666432 248999999999999652 1112111 3458
Q ss_pred hhhccCCCHHHHHHHHHHHHh
Q psy11510 150 KATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 150 ~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+||++|.|++++|+.+++.++
T Consensus 184 vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 899999999999999988764
No 100
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=1.6e-24 Score=168.59 Aligned_cols=134 Identities=12% Similarity=0.173 Sum_probs=111.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
...+||+++|.+|+|||||++++.. .++..+.+.+||++|++.+...+..+++++|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4569999999999999999999986 23445677899999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510 96 VVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA 151 (171)
Q Consensus 96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s 151 (171)
|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+ .++.++...+. ++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999999987 666666443 24899999999999854 34555555444 569
Q ss_pred hccCCCHHHHHHHHHHHHhC
Q psy11510 152 TKVKLNKQSKFQVLLNEVSN 171 (171)
Q Consensus 152 a~~~~~v~~~f~~l~~~i~~ 171 (171)
|++|.|++++|+.+++.+++
T Consensus 311 a~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.91 E-value=8.4e-25 Score=157.42 Aligned_cols=131 Identities=14% Similarity=0.194 Sum_probs=104.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------c-----ccCceEEEEEecCCccchhHHHHHhhhCCC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------I-----MTFRFKLNIWDVGGQKSLRSYWRNYFESTD 91 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------~-----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 91 (171)
++||+++|++|||||||++++.+ . +...+.+.+||++|++.+..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 58999999999999999999986 0 124568899999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----HHHHH------------HHHhhhc
Q psy11510 92 GLIWVVDSADK-RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP-----EDIKN------------VSEKATK 153 (171)
Q Consensus 92 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~------------~~~~sa~ 153 (171)
++++|+|++++ .+++.+..|+..+... .+++|+++|+||+|+.+.... +.... +.++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 5799999999888654 257999999999999763111 11111 2357999
Q ss_pred cCC-CHHHHHHHHHHHHh
Q psy11510 154 VKL-NKQSKFQVLLNEVS 170 (171)
Q Consensus 154 ~~~-~v~~~f~~l~~~i~ 170 (171)
+|. +++++++.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 160 EESDALAKLRKTIINESL 177 (184)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHh
Confidence 996 99999999988765
No 102
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=1.6e-24 Score=169.08 Aligned_cols=108 Identities=18% Similarity=0.333 Sum_probs=94.4
Q ss_pred cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC----------CChhhHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510 63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADKRRLEDCARELHELLQEERLAGATLLVFANK 132 (171)
Q Consensus 63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 132 (171)
.+.+.+++||++||++++..|..|+++++++|||+|+ ++.++|++...|+..+.......++|+++++||
T Consensus 164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence 3567899999999999999999999999999999955 478889999999999988777789999999999
Q ss_pred CCCCC------------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 133 QDIEG------------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 133 ~Dl~~------------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+|+.+ ..+.++..+++ ++||+++.||+.+|..+.+.|+
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 99854 35677777663 5699999999999999998886
No 103
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=1.9e-23 Score=152.04 Aligned_cols=134 Identities=22% Similarity=0.356 Sum_probs=111.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI 94 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 94 (171)
...+||+++|+.|||||||++++.+ +++..+.+.+||++|++.++..+..+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3578999999999999999999987 2223467789999999999988899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510 95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV 164 (171)
Q Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~ 164 (171)
+|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+ ....++++.+. ++|++++.|++++|+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999988888776432 235789999999999975 45556555554 5799999999999999
Q ss_pred HHHHHh
Q psy11510 165 LLNEVS 170 (171)
Q Consensus 165 l~~~i~ 170 (171)
+.+.+.
T Consensus 162 l~~~~~ 167 (199)
T 2f9l_A 162 ILTEIY 167 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=163.79 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=107.5
Q ss_pred CCceeEEEEEeCC---------CCcHHHHHHHHhc-----------------------c----------------ccCce
Q psy11510 35 VSNVAVVSLLRNK---------NGGETLILKKKKM-----------------------I----------------MTFRF 66 (171)
Q Consensus 35 ~~~~~ki~liG~~---------~~GKttli~~~~~-----------------------~----------------~~~~~ 66 (171)
..+.+||+++|.+ |||||||++++.+ + +...+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 5678999999999 9999999999985 0 12446
Q ss_pred EEEEEe-----------------------cCCccchhHHHHHhhh---------------------CCCEEEEEEeCCCh
Q psy11510 67 KLNIWD-----------------------VGGQKSLRSYWRNYFE---------------------STDGLIWVVDSADK 102 (171)
Q Consensus 67 ~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~ii~v~d~~~~ 102 (171)
.+.+|| ++|++++..++..+++ ++|++++|||++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 799999 7788888888888877 79999999999998
Q ss_pred --hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 103 --RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 103 --~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
.+|+.+..|+..+.......++|+++|+||+|+.+....+++..+. ++||++|.|++++|+.+++.+.
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9999999999988765344689999999999996532223444433 5699999999999999998764
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=8.8e-24 Score=150.41 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=99.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 95 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 95 (171)
..+.++|+++|++|||||||++++.+ +...+..+.+||+||++.+..++..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 45789999999999999999999986 22345678999999999999988888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-----------------HHhhhccCCCH
Q psy11510 96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-----------------SEKATKVKLNK 158 (171)
Q Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----------------~~~sa~~~~~v 158 (171)
|+|++++...+.. +.+..+. ..++|+++|+||+|+.+. +.+++... .++||++|.|+
T Consensus 85 v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 9999884322221 1222231 247899999999999763 33333322 25799999999
Q ss_pred HHHHHHHHHHH
Q psy11510 159 QSKFQVLLNEV 169 (171)
Q Consensus 159 ~~~f~~l~~~i 169 (171)
+++|+.+++.+
T Consensus 159 ~~l~~~l~~~~ 169 (178)
T 2lkc_A 159 DHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 106
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=5.5e-24 Score=167.87 Aligned_cols=107 Identities=21% Similarity=0.386 Sum_probs=93.7
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
+.+.+++||++||++++..|..++++++++|||||+++ .++|++...|+..+.+.....++|+++|+||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46789999999999999999999999999999999999 67899999999999887667889999999999
Q ss_pred CCCC-----------------CCCHHHHHHHH-------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 134 DIEG-----------------ALTPEDIKNVS-------------------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 134 Dl~~-----------------~~~~~~~~~~~-------------------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
|+.. +++.+++.+++ ++||+++.||+++|+.+++.++
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9852 35666766654 4699999999999999998775
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.90 E-value=3.7e-23 Score=146.37 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=97.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh--C
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE--S 89 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~ 89 (171)
+.++|+++|++|||||||++++.+ +...+..+.+|||||++.+. .+...+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 468999999999999999999987 12235678999999998774 45566765 8
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CC--CHHHHHHHH-----HhhhccCCCHHH
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--AL--TPEDIKNVS-----EKATKVKLNKQS 160 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~--~~~~~~~~~-----~~sa~~~~~v~~ 160 (171)
+|++++|+|+++.++ ...|+..+.+ .++|+++|+||+|+.. .+ ..+++.+.. ++||++|.|+++
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 999999999988543 3456666643 3799999999999854 22 223333322 679999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+|+.+++.+
T Consensus 155 l~~~l~~~~ 163 (165)
T 2wji_A 155 LKKAISIAV 163 (165)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=2.4e-24 Score=167.59 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=94.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc---------------cc----cCceEEEEEecCCccchhH---HHHHhhhCCCEEEEEE
Q psy11510 40 VVSLLRNKNGGETLILKKKKM---------------IM----TFRFKLNIWDVGGQKSLRS---YWRNYFESTDGLIWVV 97 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~---------------~~----~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~ii~v~ 97 (171)
||+++|++|||||||++++.+ .+ ...+++++|||+||++|+. .++.|+++++++|+||
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 799999999999999998764 11 2347899999999999974 4789999999999999
Q ss_pred eCCCh--hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------CCHHHHHHH------------HHhhhcc
Q psy11510 98 DSADK--RRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------LTPEDIKNV------------SEKATKV 154 (171)
Q Consensus 98 d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~------------~~~sa~~ 154 (171)
|+++. +.++...+|+..+.+ ..+++|+++++||+|+... +..++..++ .++||++
T Consensus 81 Ditd~~~~~~~~l~~~l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 81 DSQDEYINAITNLAMIIEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158 (331)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS
T ss_pred ECCchHHHHHHHHHHHHHHHhh--cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC
Confidence 99997 223333333333322 2468999999999999753 122222221 1678987
Q ss_pred CCCHHHHHHHHHHHHh
Q psy11510 155 KLNKQSKFQVLLNEVS 170 (171)
Q Consensus 155 ~~~v~~~f~~l~~~i~ 170 (171)
.||.++|..+++.++
T Consensus 159 -~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 159 -HSIYEAFSRIVQKLI 173 (331)
T ss_dssp -SHHHHHHHHHHTTSS
T ss_pred -CcHHHHHHHHHHHHH
Confidence 699999999988764
No 109
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=5e-23 Score=149.18 Aligned_cols=135 Identities=22% Similarity=0.354 Sum_probs=111.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL 93 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 93 (171)
....++|+++|+.|||||||++++.+ +++..+.+.+||++|++++...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 44679999999999999999999987 122345667899999999999899999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510 94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ 163 (171)
Q Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~ 163 (171)
++|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+ ....++++.+. ++|++++.|++++|+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999888888776432 235789999999999975 35555555554 579999999999999
Q ss_pred HHHHHHh
Q psy11510 164 VLLNEVS 170 (171)
Q Consensus 164 ~l~~~i~ 170 (171)
.+.+.++
T Consensus 185 ~l~~~i~ 191 (191)
T 1oix_A 185 TILTEIY 191 (191)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998764
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=1.1e-23 Score=147.43 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=95.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-------hhHHHHHhhhCCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-------LRSYWRNYFESTD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 91 (171)
.||+++|++|+|||||++++.+ ....+..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 5899999999999999999987 223456789999999887 4556778889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH--------HHHHhhhccCCCHHHHHH
Q psy11510 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK--------NVSEKATKVKLNKQSKFQ 163 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--------~~~~~sa~~~~~v~~~f~ 163 (171)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+. .+++. .+.++||++|.|++++|+
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLYGLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHHhCCCCCeEEEecccCCChHHHHH
Confidence 999999999864432 2334444333 47899999999999763 11111 233779999999999999
Q ss_pred HHHHHH
Q psy11510 164 VLLNEV 169 (171)
Q Consensus 164 ~l~~~i 169 (171)
.+++.+
T Consensus 155 ~l~~~l 160 (161)
T 2dyk_A 155 AIWERL 160 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998764
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=1.4e-22 Score=150.51 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=101.1
Q ss_pred cCCC-CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCc------cc----hh
Q psy11510 31 HRPQ-VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQ------KS----LR 80 (171)
Q Consensus 31 ~~~~-~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~------~~----~~ 80 (171)
+++. ..+.+||+++|.+|||||||++++.+ .......+.+|||||+ +. +.
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence 3443 45789999999999999999999987 1224578999999998 44 22
Q ss_pred HHHHHhhhCCCEEEEEEeCCChhhHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHH---HHHHH------
Q psy11510 81 SYWRNYFESTDGLIWVVDSADKRRLE--DCARELHELLQEERLAGATLLVFANKQDIEG--ALTPE---DIKNV------ 147 (171)
Q Consensus 81 ~~~~~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~---~~~~~------ 147 (171)
. +..++..+|++++|+|++++.+|+ ....|+..+... .+++|+++|+||+|+.+ .+..+ .+..+
T Consensus 101 ~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 101 T-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp H-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred H-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 2 345578899999999999988764 233556655332 24899999999999975 34432 22222
Q ss_pred ----HHhhhccCCCHHHHHHHHHHHHh
Q psy11510 148 ----SEKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 148 ----~~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
.++||++|.|++++|+.+++.+.
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHH
Confidence 25699999999999999998764
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=4e-23 Score=160.35 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=104.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cc-cCceEEEEEecCCccch-----hHHHHHhhhCC
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IM-TFRFKLNIWDVGGQKSL-----RSYWRNYFEST 90 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~-~~~~~~~i~d~~g~~~~-----~~~~~~~~~~~ 90 (171)
..+||+++|++|||||||++++.+ .. .+.+.+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 568999999999999999999876 11 24678999999999998 67889999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCC--------CCHHHHHHHH-----------Hh
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQE-ERLAGATLLVFANKQDIEGA--------LTPEDIKNVS-----------EK 150 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~-----------~~ 150 (171)
|++++|||++++.+|+.+..|...+... ...+++|+++|+||+|+.+. ...+++.++. ++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999999887664443221 11368999999999999762 2223333333 45
Q ss_pred hhccCCCHHHHHHHHHHHHh
Q psy11510 151 ATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 151 sa~~~~~v~~~f~~l~~~i~ 170 (171)
||++ .++.++|..+++.++
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 8888 899999999887653
No 113
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=7.5e-23 Score=150.57 Aligned_cols=107 Identities=25% Similarity=0.338 Sum_probs=90.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------cccCceEEEEEecCCccchhHHHHHhhhC----CCEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------IMTFRFKLNIWDVGGQKSLRSYWRNYFES----TDGLIW 95 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~~ii~ 95 (171)
..+.++|+++|++|+|||||++++.+ .......+.+||+||++.++..+..+++. +|++++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 88 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 88 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEE
Confidence 45789999999999999999999997 11124578999999999999999999887 899999
Q ss_pred EEeCC-ChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCCH
Q psy11510 96 VVDSA-DKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEGALTP 141 (171)
Q Consensus 96 v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~~~~~ 141 (171)
|+|++ ++.+|.....|+..++.... ..++|+++|+||+|+......
T Consensus 89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 99999 88899999999988876532 368999999999999876553
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=1.5e-22 Score=145.76 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=97.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCC----------ccchhHHHHHhh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGG----------QKSLRSYWRNYF 87 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g----------~~~~~~~~~~~~ 87 (171)
....+||+++|+.|||||||++++.+ ....+..+.+||+|| ++.+..+++.++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 56778999999999999999999987 111123578999999 777888888888
Q ss_pred hCC---CEEEEEEeCCChhhH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH---------H
Q psy11510 88 EST---DGLIWVVDSADKRRL--EDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS---------E 149 (171)
Q Consensus 88 ~~~---~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~---------~ 149 (171)
+.+ |++++|+|+++..+. ..+..|+.. .++|+++|+||+|+.+.... +++.+.. +
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 776 999999998875443 233333332 27899999999999763322 2233322 5
Q ss_pred hhhccCCCHHHHHHHHHHHHh
Q psy11510 150 KATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 150 ~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+||++|.|++++|+.+.+.+.
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHhh
Confidence 699999999999999988764
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=4.7e-24 Score=152.21 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=96.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH------H--HHHhh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS------Y--WRNYF 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~------~--~~~~~ 87 (171)
++..||+++|.+|||||||++++.+ +...+..+.+|||||++.+.. + ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 3568999999999999999999986 112345689999999865321 1 12457
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHHHhhhccCCCHHHHHHH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNVSEKATKVKLNKQSKFQV 164 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~sa~~~~~v~~~f~~ 164 (171)
+++|++++|+|++++.+++. ..|+..+.+. ...++|+++|+||+|+.+.... .....+.++||++|.|++++|+.
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 159 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNH 159 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHH
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHHH
Confidence 89999999999999888763 4566666443 2357999999999998542110 00113347899999999999999
Q ss_pred HHHHH
Q psy11510 165 LLNEV 169 (171)
Q Consensus 165 l~~~i 169 (171)
+.+.+
T Consensus 160 l~~~~ 164 (172)
T 2gj8_A 160 LKQSM 164 (172)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98754
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=1.8e-22 Score=145.80 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=99.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcc------------cc------CceEEEEEecCC----------ccchhHHHHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMI------------MT------FRFKLNIWDVGG----------QKSLRSYWRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~------------~~------~~~~~~i~d~~g----------~~~~~~~~~~~ 86 (171)
..+.++|+++|.+|||||||++++.+- .. .+..+.+||+|| ++.+..++..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 456899999999999999999999870 00 012578999999 78888888888
Q ss_pred hhCC---CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH---------Hh
Q psy11510 87 FEST---DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS---------EK 150 (171)
Q Consensus 87 ~~~~---~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~---------~~ 150 (171)
++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+.... +++.+.+ ++
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence 8877 9999999999887776532 1122222 57899999999999764322 2333322 56
Q ss_pred hhccCCCHHHHHHHHHHHHh
Q psy11510 151 ATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 151 sa~~~~~v~~~f~~l~~~i~ 170 (171)
||++|.|++++|+.+.+.+-
T Consensus 175 Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred EccCCCCHHHHHHHHHHHhc
Confidence 99999999999999988763
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=3.2e-22 Score=143.67 Aligned_cols=128 Identities=21% Similarity=0.239 Sum_probs=99.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh-
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE- 88 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~- 88 (171)
..+.++|+++|+.|||||||++++.+ +...+..+.+||+||++.+. .++..++.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 44679999999999999999999987 23345778999999998874 45677775
Q ss_pred -CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--C--CCHHHHHHHH-----HhhhccCCCH
Q psy11510 89 -STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--A--LTPEDIKNVS-----EKATKVKLNK 158 (171)
Q Consensus 89 -~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~--~~~~~~~~~~-----~~sa~~~~~v 158 (171)
.+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+.. . ...+++.+.. ++||++|.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 4555667776643 4789999999999854 1 2233333332 6799999999
Q ss_pred HHHHHHHHHHH
Q psy11510 159 QSKFQVLLNEV 169 (171)
Q Consensus 159 ~~~f~~l~~~i 169 (171)
+++|+.+++.+
T Consensus 157 ~~l~~~i~~~~ 167 (188)
T 2wjg_A 157 EELKKAISIAV 167 (188)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 118
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=2.4e-23 Score=164.21 Aligned_cols=107 Identities=19% Similarity=0.306 Sum_probs=88.2
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DKRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
..+.+++||++||++++.+|+.++++++++|+|||++ +.++|++...|+..+.+....+++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 788999999999999876666789999999999
Q ss_pred CCCCC----CC-------------------HHHHHHH------------------------HHhhhccCCCHHHHHHHHH
Q psy11510 134 DIEGA----LT-------------------PEDIKNV------------------------SEKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 134 Dl~~~----~~-------------------~~~~~~~------------------------~~~sa~~~~~v~~~f~~l~ 166 (171)
|+.+. ++ .++..++ .++||+++.||+++|+.++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98431 11 2333222 2579999999999999999
Q ss_pred HHHh
Q psy11510 167 NEVS 170 (171)
Q Consensus 167 ~~i~ 170 (171)
+.|+
T Consensus 341 ~~I~ 344 (354)
T 2xtz_A 341 ETLR 344 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.88 E-value=2.4e-23 Score=149.57 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=96.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc----------cccCc--e---EEEEEecCC-----------ccchhHHHHHhhhC-CC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM----------IMTFR--F---KLNIWDVGG-----------QKSLRSYWRNYFES-TD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~----------~~~~~--~---~~~i~d~~g-----------~~~~~~~~~~~~~~-~~ 91 (171)
+||+++|++|||||||++++.+ ..... + .+.+||+|| ++.+...+..++++ ++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 81 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 6899999999999999999998 01000 1 478999999 77888888888887 77
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHH--------HHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------------
Q psy11510 92 GLIWVVDSADKRRLEDC-ARELHE--------LLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------------- 147 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------------- 147 (171)
++++|+++.+..++..+ ..|... +.......++|+++|+||+|+.+.. .++..++
T Consensus 82 ~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2cxx_A 82 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVF 160 (190)
T ss_dssp GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHE
T ss_pred cCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcE
Confidence 77777777677777766 445432 2222223689999999999997643 2233322
Q ss_pred HHhhhccCCCHHHHHHHHHHHHh
Q psy11510 148 SEKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 148 ~~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
.++||++|.|++++|+.+++.+.
T Consensus 161 ~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 161 IPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHhcc
Confidence 35799999999999999998763
No 120
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.88 E-value=1.5e-22 Score=158.46 Aligned_cols=107 Identities=24% Similarity=0.365 Sum_probs=90.9
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DKRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
+.+.+++||++||++++.+|..|+++++++|||+|++ +.++|++...|+..+.......++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 5678899999999999999999999999999999998 788999999999999888777899999999999
Q ss_pred CCCC-----------------CCCHHHHHHHH-----------------------------------HhhhccCCCHHHH
Q psy11510 134 DIEG-----------------ALTPEDIKNVS-----------------------------------EKATKVKLNKQSK 161 (171)
Q Consensus 134 Dl~~-----------------~~~~~~~~~~~-----------------------------------~~sa~~~~~v~~~ 161 (171)
|+.+ ..+.+++.+++ ++||+++.||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 9843 12344442221 4588899999999
Q ss_pred HHHHHHHHh
Q psy11510 162 FQVLLNEVS 170 (171)
Q Consensus 162 f~~l~~~i~ 170 (171)
|..+.+.|+
T Consensus 319 F~~v~~~Il 327 (340)
T 4fid_A 319 FMLAVDVIM 327 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 121
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=8.5e-23 Score=161.58 Aligned_cols=107 Identities=20% Similarity=0.374 Sum_probs=86.7
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
+++.+.+||++||+.++..|..++++++++|||+|+++ .++|++...|+..+.+.....++|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 46789999999999999999999999999999999999 78999999999999887667899999999999
Q ss_pred CCCC------------------CCCHHHHHHHH-------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 134 DIEG------------------ALTPEDIKNVS-------------------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 134 Dl~~------------------~~~~~~~~~~~-------------------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
|+.. .++.+++.+++ ++||+++.||+++|+.+.+.|+
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 9852 25666666543 4699999999999999988775
No 122
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.1e-22 Score=144.45 Aligned_cols=114 Identities=25% Similarity=0.336 Sum_probs=94.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------cccCceEEEEEecCCccchhHHHHHhhhC----CCEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------IMTFRFKLNIWDVGGQKSLRSYWRNYFES----TDGLIW 95 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~~ii~ 95 (171)
..+.++|+++|++|||||||++++.+ .+.....+.+||+||++.+...+..++.+ +|++++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence 45679999999999999999999997 11234568899999999998888888776 899999
Q ss_pred EEeCC-ChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 96 VVDSA-DKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 96 v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
|+|++ +..++..+..|+..++.... .+++|+++|+||+|+.+....+++.+.+
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 99999 89999999999988876432 2589999999999998876666665554
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=1.7e-21 Score=151.24 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=104.0
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccC-ceEEEEEecCCccchh----------H
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTF-RFKLNIWDVGGQKSLR----------S 81 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~-~~~~~i~d~~g~~~~~----------~ 81 (171)
+++.+.-.|+++|.+|||||||++++.+ .... +..+.+|||||+.... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 3467889999999999999999999998 2334 7889999999985543 5
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-CC-CCHHHHHHHH----------H
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE-GA-LTPEDIKNVS----------E 149 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~-~~-~~~~~~~~~~----------~ 149 (171)
.+..+++.+|++++|+|+++..++.....|+..+.. .++|+++|+||+|+. +. ...+.+..+. +
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 667788999999999999998888877666666533 479999999999997 32 2222222222 4
Q ss_pred hhhccCCCHHHHHHHHHHHH
Q psy11510 150 KATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 150 ~sa~~~~~v~~~f~~l~~~i 169 (171)
+||++|.|++++|+.+++.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHS
T ss_pred EeCCCCCCHHHHHHHHHHhC
Confidence 59999999999999998754
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=1.6e-21 Score=147.97 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=98.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH------HHHHhh--h
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS------YWRNYF--E 88 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~ 88 (171)
.+.++|+++|++|||||||++++.+ +...+..+.+||+||+..+.. +...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 4679999999999999999999997 233467899999999987764 335565 4
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHH
Q psy11510 89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQ 159 (171)
Q Consensus 89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~ 159 (171)
.+|++++|+|+++.++. ..|+..+.+ .++|+++|+||+|+.+ ....+++.+.+ ++||++|.|++
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 89999999999986554 335555543 3799999999999854 22334444443 67999999999
Q ss_pred HHHHHHHHHH
Q psy11510 160 SKFQVLLNEV 169 (171)
Q Consensus 160 ~~f~~l~~~i 169 (171)
++|+.+++.+
T Consensus 156 el~~~i~~~~ 165 (258)
T 3a1s_A 156 ELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 125
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.86 E-value=3.6e-22 Score=159.51 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=90.1
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
+++.+++||++||++++.+|..|+++++++|||||+++ .++|++...|+..+.+....+++|+++|+||+
T Consensus 215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 45789999999999999999999999999999999999 89999999999999876666789999999999
Q ss_pred CCCC-C----C---------------------------CHHHHHHHH---------------------HhhhccCCCHHH
Q psy11510 134 DIEG-A----L---------------------------TPEDIKNVS---------------------EKATKVKLNKQS 160 (171)
Q Consensus 134 Dl~~-~----~---------------------------~~~~~~~~~---------------------~~sa~~~~~v~~ 160 (171)
|+.. . + +.+++..++ ++||+++.||++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 9843 1 1 023333321 578999999999
Q ss_pred HHHHHHHHHh
Q psy11510 161 KFQVLLNEVS 170 (171)
Q Consensus 161 ~f~~l~~~i~ 170 (171)
+|..+.+.|+
T Consensus 375 vF~~v~~~I~ 384 (402)
T 1azs_C 375 VFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 126
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.86 E-value=1.9e-21 Score=161.04 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=103.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------c--------------ccCceEEEEEecCCccchhHHHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------I--------------MTFRFKLNIWDVGGQKSLRSYWRN 85 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~--------------~~~~~~~~i~d~~g~~~~~~~~~~ 85 (171)
..+.+||+++|.+|||||||++++.+ . ....+.+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 56789999999999999999999997 0 122578999999999999999999
Q ss_pred hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC
Q psy11510 86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK 155 (171)
Q Consensus 86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~ 155 (171)
+++++|++++|+|+++.+ ....|+..+... .++.|+++|+||+|+.+ .+..+++.+.. ++||++|
T Consensus 118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHSSEEEEEEECGGGGG---GHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HccCCcEEEEEEeCCCch---hHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999998764 445666666443 24799999999999976 45566665543 6799999
Q ss_pred CCHHHHHHHHHHHHh
Q psy11510 156 LNKQSKFQVLLNEVS 170 (171)
Q Consensus 156 ~~v~~~f~~l~~~i~ 170 (171)
.|++++|+.+++.+.
T Consensus 193 ~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 193 DGVESIAKSLKSAVL 207 (535)
T ss_dssp --CTTHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999988764
No 127
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=1.2e-21 Score=148.35 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=94.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----------HHHHhh--
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----------YWRNYF-- 87 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----------~~~~~~-- 87 (171)
.+|+++|++|||||||++++.+ +...+..+.+||+||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 3899999999999999999998 233456889999999887764 566677
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHH-----HhhhccCCCH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA----LTPEDIKNVS-----EKATKVKLNK 158 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~-----~~sa~~~~~v 158 (171)
+++|++++|+|+++.++...+. ..+.+ .++|+++|+||+|+... ...+.+.+.+ ++||++|.|+
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~---~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT---SQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH---HHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred CCCCEEEEEeeCCCchhHHHHH---HHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 8899999999999876654433 33322 37999999999998641 3344444443 6799999999
Q ss_pred HHHHHHHHH
Q psy11510 159 QSKFQVLLN 167 (171)
Q Consensus 159 ~~~f~~l~~ 167 (171)
+++|+.+.+
T Consensus 155 ~el~~~i~~ 163 (256)
T 3iby_A 155 PALQQSLLH 163 (256)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999875
No 128
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=1.4e-21 Score=149.38 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=95.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----------HHHHhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----------YWRNYF 87 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 87 (171)
++++|+++|.+|||||||++++.+ +...+..+.+||+||+..+.. ++..++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 568999999999999999999998 333456789999999887662 334443
Q ss_pred --hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHH-----HhhhccCC
Q psy11510 88 --ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA----LTPEDIKNVS-----EKATKVKL 156 (171)
Q Consensus 88 --~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~-----~~sa~~~~ 156 (171)
+++|++++|+|+++.++...+..++... ++|+++|+||+|+.+. ...+.+.+.. ++||++|.
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 6899999999999866554443333322 7999999999998642 2334444443 67999999
Q ss_pred CHHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNEV 169 (171)
Q Consensus 157 ~v~~~f~~l~~~i 169 (171)
|++++|+.+.+.+
T Consensus 155 gi~el~~~i~~~~ 167 (274)
T 3i8s_A 155 GIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987643
No 129
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=2.9e-21 Score=147.53 Aligned_cols=124 Identities=17% Similarity=0.234 Sum_probs=96.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh--C
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE--S 89 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~ 89 (171)
..++|+++|++|||||||++++.+ +.. +..+.+||+||+..+. .++..|+. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 457999999999999999999997 122 5578999999998875 46677776 6
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHH
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQS 160 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~ 160 (171)
+|++++|+|+++.++. ..|...+.+ .++|+++|+||+|+.. ....+.+.+.+ ++||++|.|+++
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence 9999999999886544 345555543 4799999999999854 22334444433 679999999999
Q ss_pred HHHHHHHH
Q psy11510 161 KFQVLLNE 168 (171)
Q Consensus 161 ~f~~l~~~ 168 (171)
+|+.+++.
T Consensus 154 l~~~i~~~ 161 (272)
T 3b1v_A 154 VVKKAAHT 161 (272)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99999874
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=3.1e-21 Score=149.33 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=97.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHhh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNYF 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 87 (171)
.+..+|+++|.+|||||||++++.+ ....+..+.+|||||... +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4566899999999999999999998 123467899999999876 455667788
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHH------HHhhhccCCCHH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKNV------SEKATKVKLNKQ 159 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~------~~~sa~~~~~v~ 159 (171)
+++|++++|+|++++.+.. ..|+...+... .+++|+++|+||+|+..... .+.+..+ .++||++|.|++
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~ 161 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVA 161 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHH
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHH
Confidence 9999999999998865443 34544443332 24799999999999975322 1222221 256899999999
Q ss_pred HHHHHHHHH
Q psy11510 160 SKFQVLLNE 168 (171)
Q Consensus 160 ~~f~~l~~~ 168 (171)
++|+.+.+.
T Consensus 162 ~l~~~l~~~ 170 (301)
T 1wf3_A 162 ELKADLLAL 170 (301)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999998764
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=5.2e-21 Score=154.87 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=112.8
Q ss_pred eeccceeeeccceecccc-------cccCC------CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------
Q psy11510 11 DVGGQKSLRSYSYYGMGM-------LRHRP------QVSNVAVVSLLRNKNGGETLILKKKKM----------------- 60 (171)
Q Consensus 11 ~~~~~~~~~~~~~~~m~~-------~~~~~------~~~~~~ki~liG~~~~GKttli~~~~~----------------- 60 (171)
.+|..+.++.+|.++.|. .+... .....+||+++|.+|||||||++++.+
T Consensus 135 ~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~ 214 (436)
T 2hjg_A 135 SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV 214 (436)
T ss_dssp GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------C
T ss_pred HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee
Confidence 344456677777666654 11111 123569999999999999999999997
Q ss_pred ---cccCceEEEEEecCCc----------cchhHHHH-HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeE
Q psy11510 61 ---IMTFRFKLNIWDVGGQ----------KSLRSYWR-NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126 (171)
Q Consensus 61 ---~~~~~~~~~i~d~~g~----------~~~~~~~~-~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ 126 (171)
+..++..+.+|||||+ +.|..+.. .+++.+|++++|+|++++.+++.. .|+..+.. .++|+
T Consensus 215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~i 289 (436)
T 2hjg_A 215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAV 289 (436)
T ss_dssp CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEE
T ss_pred EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcE
Confidence 2334567899999997 56665544 478899999999999998888765 45555532 57999
Q ss_pred EEEEeCCCCCCCCC--HHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510 127 LVFANKQDIEGALT--PEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 127 ivv~nK~Dl~~~~~--~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i 169 (171)
++|+||+|+.+... .+++.+.+ ++||++|.|++++|+.+.+.+
T Consensus 290 iiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 290 VIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp EEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred EEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 99999999976322 33332222 569999999999999988764
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=2.9e-21 Score=157.74 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=90.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHH--------Hhh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWR--------NYF 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~--------~~~ 87 (171)
++.++|+++|.+|||||||++++.+ +...+..+.+|||||++.+...+. .++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 3568999999999999999999987 334567899999999987665443 357
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH--HHHH-----HHhhhccCCCHHH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED--IKNV-----SEKATKVKLNKQS 160 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~-----~~~sa~~~~~v~~ 160 (171)
+++|++++|+|++++.+++++..+. .++... .++|+++|+||+|+.+....+. +.+. .++||++|.|+++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIR-ELKAAH--PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDT 387 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHH-HHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHH-HHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHH
Confidence 8999999999999988875432222 222222 3799999999999987443322 3222 3679999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+|+.+.+.+
T Consensus 388 L~~~i~~~~ 396 (476)
T 3gee_A 388 LKQHMGDLV 396 (476)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 133
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=1.8e-21 Score=143.50 Aligned_cols=130 Identities=9% Similarity=0.081 Sum_probs=94.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCC----------ccchhHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGG----------QKSLRSY 82 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g----------~~~~~~~ 82 (171)
..+.++|+++|..|||||||++++.+ .. .....+.+||||| ++.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 45689999999999999999999987 11 3346789999999 4555667
Q ss_pred HHHhhhC---CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HH----HHHH----
Q psy11510 83 WRNYFES---TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----ED----IKNV---- 147 (171)
Q Consensus 83 ~~~~~~~---~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~----~~~~---- 147 (171)
...+++. +|++++|+|+++..+.. ...++..+ .. .++|+++|+||+|+...... ++ +...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 7777776 78899999998754322 22333333 22 47899999999999763221 11 1121
Q ss_pred -------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 148 -------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 148 -------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
.++||++|.|++++|+.+.+.+
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 2469999999999999998765
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.9e-20 Score=152.37 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=112.8
Q ss_pred eeeccceeeeccceecccc----------ccc---CCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------
Q psy11510 10 WDVGGQKSLRSYSYYGMGM----------LRH---RPQVSNVAVVSLLRNKNGGETLILKKKKM---------------- 60 (171)
Q Consensus 10 ~~~~~~~~~~~~~~~~m~~----------~~~---~~~~~~~~ki~liG~~~~GKttli~~~~~---------------- 60 (171)
|.++..+.+..+|.++.|. +.. .......+||+++|.+|+|||||++++.+
T Consensus 154 ~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~ 233 (456)
T 4dcu_A 154 YSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA 233 (456)
T ss_dssp GGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT
T ss_pred HHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE
Confidence 4455666677777666554 111 11135679999999999999999999996
Q ss_pred ----cccCceEEEEEecCC----------ccchhHHHHH-hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe
Q psy11510 61 ----IMTFRFKLNIWDVGG----------QKSLRSYWRN-YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125 (171)
Q Consensus 61 ----~~~~~~~~~i~d~~g----------~~~~~~~~~~-~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 125 (171)
+...+..+.+||||| ++.|..+... +++.+|++++|+|+++..+.. ...|+..+. . .++|
T Consensus 234 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~-~---~~~~ 308 (456)
T 4dcu_A 234 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAH-E---AGKA 308 (456)
T ss_dssp TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHH-H---TTCE
T ss_pred EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHH-H---cCCC
Confidence 334556889999999 7888777664 788999999999998854422 233344442 2 5799
Q ss_pred EEEEEeCCCCCCC--CCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510 126 LLVFANKQDIEGA--LTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 126 ~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i 169 (171)
+++|+||+|+.+. ...+++.+.+ ++||++|.|++++|+.+.+.+
T Consensus 309 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 309 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 9999999999752 3334444433 459999999999999998765
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=2.3e-20 Score=142.30 Aligned_cols=127 Identities=18% Similarity=0.144 Sum_probs=98.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH------HHHHhh--hC
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS------YWRNYF--ES 89 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~ 89 (171)
+.++|+++|++|||||||++++.+ ....+..+.+||+||+..+.. .+..++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 468999999999999999999998 233456789999999988766 666776 68
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHH
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQS 160 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~ 160 (171)
+|++++|+|+++.. ....++..+.+. ..+|+++|+||+|+.+ ....+.+.+.+ ++||++|.|+++
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 99999999998853 333445555432 2399999999999753 23444455444 679999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+|+.+.+.+
T Consensus 156 l~~~i~~~~ 164 (271)
T 3k53_A 156 LKRMIALMA 164 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.83 E-value=4.2e-20 Score=148.19 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=104.5
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhcc---------------------------------------ccCceEEEEEec
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKMI---------------------------------------MTFRFKLNIWDV 73 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~~---------------------------------------~~~~~~~~i~d~ 73 (171)
+..++.++|+++|..|+|||||++++.+. ......+.+||+
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 34678899999999999999999999860 001168999999
Q ss_pred CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH-
Q psy11510 74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS- 148 (171)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~- 148 (171)
||+++|...+..++..+|++++|+|+++..++.+..+++..+... ...|+++|+||+|+.+... .+++.+.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987677777766554322 2368999999999976321 12233322
Q ss_pred ----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 ----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 ----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
++||++|.|++++++.+.+.+
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 459999999999999998754
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.83 E-value=1.4e-19 Score=143.08 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=100.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh---------HHHHHhh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR---------SYWRNYF 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~---------~~~~~~~ 87 (171)
...++|+++|.+|||||||++++.+ .......+.+|||||..... .....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 5678999999999999999999997 12234568999999975431 1222445
Q ss_pred hCCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCC
Q psy11510 88 ESTDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLN 157 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~ 157 (171)
..+|++++|+|+++.. +++....|+..+.... .+.|+++|+||+|+......+++...+ ++||++|+|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 5799999999998877 6777778888775532 289999999999997632223333332 569999999
Q ss_pred HHHHHHHHHHHH
Q psy11510 158 KQSKFQVLLNEV 169 (171)
Q Consensus 158 v~~~f~~l~~~i 169 (171)
++++|+.+++.+
T Consensus 323 i~~l~~~i~~~l 334 (357)
T 2e87_A 323 IDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.83 E-value=3e-20 Score=151.91 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=99.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc-chh--------HHHHHhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK-SLR--------SYWRNYF 87 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~-~~~--------~~~~~~~ 87 (171)
..++|+++|.+|||||||++++.+ +..++..+.+|||+|.. .+. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 348999999999999999999987 23356789999999987 543 2345678
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------HhhhccCCCHHH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------EKATKVKLNKQS 160 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~sa~~~~~v~~ 160 (171)
+.+|++++|+|++++.+++... ++. .+ .++|+++|+||+|+.+..+.+++.++. ++||++|.|+++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~-~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILE-RI-----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEK 394 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHH-HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHH-Hh-----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHH
Confidence 8999999999999988776532 222 22 478999999999998766666665543 579999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+|+.+.+.+
T Consensus 395 L~~~l~~~~ 403 (482)
T 1xzp_A 395 LEESIYRET 403 (482)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998764
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=4.2e-20 Score=149.70 Aligned_cols=124 Identities=15% Similarity=0.271 Sum_probs=93.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc---------hhHHHHHhhhCC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS---------LRSYWRNYFEST 90 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~~ 90 (171)
+|+++|.+|||||||++++.+ ....+..+.+|||||++. +...+..+++++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 799999999999999999997 223456789999999764 345677889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH-HHHH--------HhhhccCCCHHHH
Q psy11510 91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI-KNVS--------EKATKVKLNKQSK 161 (171)
Q Consensus 91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~--------~~sa~~~~~v~~~ 161 (171)
|++++|+|++++.+... .++..++.. .++|+++|+||+|+.+.. ..++ .++. ++||++|.|+.++
T Consensus 83 d~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 83 DLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp SEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence 99999999987655432 233343332 378999999999985421 1222 2222 4699999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
|+.+++.+
T Consensus 157 ~~~i~~~l 164 (439)
T 1mky_A 157 LETIIKKL 164 (439)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998765
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.82 E-value=1.3e-20 Score=151.64 Aligned_cols=128 Identities=15% Similarity=0.054 Sum_probs=97.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCc-eEEEEEecCCccchhHH-------HHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFR-FKLNIWDVGGQKSLRSY-------WRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~-~~~~i~d~~g~~~~~~~-------~~~~ 86 (171)
..+.++|+++|..|+|||||++++.+ +.... ..+.+|||||++++..+ +..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 56789999999999999999999987 11122 27899999999876543 4567
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCH
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNK 158 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v 158 (171)
+.++|++++|+|++... ....|+..+.+ .++|+++|+||+|+......+...++. ++||++|.|+
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHH----TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHh----cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 88999999999984332 33455555533 279999999999998754433333222 6799999999
Q ss_pred HHHHHHHHHHH
Q psy11510 159 QSKFQVLLNEV 169 (171)
Q Consensus 159 ~~~f~~l~~~i 169 (171)
+++|+.+.+.+
T Consensus 184 ~eL~~~L~~~l 194 (423)
T 3qq5_A 184 DDIGKTISEIL 194 (423)
T ss_dssp TTHHHHHHHHS
T ss_pred HHHHHHHHHhh
Confidence 99999998875
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=3.3e-20 Score=150.20 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=91.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc--------chhHHHHHhhhC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK--------SLRSYWRNYFES 89 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~ 89 (171)
..+|+++|.+|||||||++++.+ ....+..+.+|||+|++ .+...+..++++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 36899999999999999999988 22345678999999985 566778888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHH-----HHHHHhhhccCCCHHHHHH
Q psy11510 90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL-TPEDI-----KNVSEKATKVKLNKQSKFQ 163 (171)
Q Consensus 90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~sa~~~~~v~~~f~ 163 (171)
+|++++|+|++++.+... .++..++.. .++|+++|+||+|+.... ...+. .+..++||++|.|+.++++
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHH
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHH
Confidence 999999999988766543 345555443 578999999999986521 00000 1223679999999999999
Q ss_pred HHHHHH
Q psy11510 164 VLLNEV 169 (171)
Q Consensus 164 ~l~~~i 169 (171)
.+.+.+
T Consensus 158 ~i~~~l 163 (436)
T 2hjg_A 158 AVAEHF 163 (436)
T ss_dssp HHHHTG
T ss_pred HHHHhc
Confidence 998754
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.80 E-value=4.8e-20 Score=150.00 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=88.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHH--------hh
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRN--------YF 87 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~--------~~ 87 (171)
++.++|+++|.+|||||||++++.+ +..++..+.+|||+|...+...++. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3568999999999999999999987 3445678999999998765544333 56
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH------HHHHHhhhccCCCHHHH
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI------KNVSEKATKVKLNKQSK 161 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~------~~~~~~sa~~~~~v~~~ 161 (171)
+.+|++++|+|++++.+... ..++..+ .+.|+++|+||+|+......+.+ ....++||++|.|++++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHH
Confidence 78999999999998776654 3444444 24799999999999763211111 12347899999999999
Q ss_pred HHHHHHHH
Q psy11510 162 FQVLLNEV 169 (171)
Q Consensus 162 f~~l~~~i 169 (171)
|+.+.+.+
T Consensus 375 ~~~i~~~~ 382 (462)
T 3geh_A 375 ETAILEIV 382 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 143
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=1e-18 Score=145.90 Aligned_cols=129 Identities=13% Similarity=0.212 Sum_probs=100.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~ 76 (171)
.+..+|+++|..++|||||+++++. + ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 4578999999999999999999964 0 122367899999999
Q ss_pred cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------
Q psy11510 77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------- 147 (171)
Q Consensus 77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------- 147 (171)
.+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.+....+...+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcc
Confidence 999998899999999999999999988777766665444 2 47999999999999874322212222
Q ss_pred --HHhhhccCCCHHHHHHHHHHHH
Q psy11510 148 --SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 148 --~~~sa~~~~~v~~~f~~l~~~i 169 (171)
...||++|.|++++|+.+++.+
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHS
T ss_pred cEEEEEeecCCCchHHHHHHHHhc
Confidence 2459999999999999998764
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=9.5e-20 Score=143.18 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCcc----chhHHHHHhhh---CCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQK----SLRSYWRNYFE---STD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~----~~~~~~~~~~~---~~~ 91 (171)
.+|+++|.+|||||||++++.+ +..+ ...+.+||+||.. .+..+...|++ .++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 3688999999999999999997 1222 2678999999953 33445555554 599
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCC-CHHHHHHH-------HHhhhccCCCHH
Q psy11510 92 GLIWVVDSAD---KRRLEDCARELHELLQEER-LAGATLLVFANKQDIEGAL-TPEDIKNV-------SEKATKVKLNKQ 159 (171)
Q Consensus 92 ~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~~~-~~~~~~~~-------~~~sa~~~~~v~ 159 (171)
++++|+|+++ .++++.+..|+.++..... ..++|+++|+||+|+.+.. ..+++.+. .++||+++.|++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~ 318 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLR 318 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHH
Confidence 9999999998 7889888888888755321 3589999999999997521 11222222 256999999999
Q ss_pred HHHHHHHHHHh
Q psy11510 160 SKFQVLLNEVS 170 (171)
Q Consensus 160 ~~f~~l~~~i~ 170 (171)
++|+.+.+.+.
T Consensus 319 eL~~~l~~~l~ 329 (342)
T 1lnz_A 319 ELLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.79 E-value=6.6e-19 Score=147.11 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=98.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCcc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQK 77 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~~ 77 (171)
+..+|+++|..++|||||+++++. + ++....+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 567999999999999999999964 1 1224788999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---HHHHHH------
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE---DIKNVS------ 148 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~------ 148 (171)
+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+.+....+ ++.+.+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcce
Confidence 99999999999999999999999987777666665444 2 478999999999998743322 222221
Q ss_pred --HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 --EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 --~~sa~~~~~v~~~f~~l~~~i 169 (171)
..||++|.|++++|+.+.+.+
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHS
T ss_pred EEEeecccCCCchhHHHHHhhcC
Confidence 459999999999999998764
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.78 E-value=5.7e-18 Score=139.86 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=81.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEecC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDVG 74 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~~ 74 (171)
.+..+|+++|.+|+|||||+++++. +...+..+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 4578999999999999999999951 34456889999999
Q ss_pred CccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 75 GQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 75 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
|+.+|...+..+++.+|++++|+|+++..+......| ..+. ..++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~----~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR----LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH----TTTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----HcCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999987766655433 3332 247999999999999753
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=2.1e-18 Score=130.33 Aligned_cols=132 Identities=12% Similarity=0.105 Sum_probs=89.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh-----------HH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR-----------SY 82 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~-----------~~ 82 (171)
..+.++|+++|.+|||||||++++.+ ....+..+.+|||||...+. ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999987 12234678999999976542 12
Q ss_pred HHHhhhCCCEEEEEEeCCChhhH-HHHHHHHHHHHhccccCCCeEEEEEe-CCCCCCCCCHHH---------HHHH----
Q psy11510 83 WRNYFESTDGLIWVVDSADKRRL-EDCARELHELLQEERLAGATLLVFAN-KQDIEGALTPED---------IKNV---- 147 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~---------~~~~---- 147 (171)
...+++.+|++++|+|+++.... ..+..++..+.... ...|.+++.| |+|+.+. ...+ +...
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 23467899999999999863222 23334444443211 1345555555 9999753 2222 1111
Q ss_pred ---------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 148 ---------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 148 ---------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
.++||++|.|++++|+.+.+.+
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 2458899999999999998765
No 148
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=3.9e-19 Score=144.61 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCC--------ccchhHHHHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGG--------QKSLRSYWRNY 86 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g--------~~~~~~~~~~~ 86 (171)
..+..+|+++|.+|||||||++++.+ ....+..+.+||||| ++.+...+..+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 34467999999999999999999998 333456789999999 77888888999
Q ss_pred hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCH
Q psy11510 87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNK 158 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v 158 (171)
++++|++++|+|..+..+. ...++..++.. .++|+++|+||+|+.+.. ++..++ ...||++|.|+
T Consensus 100 ~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HHHCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTH
T ss_pred HhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccch
Confidence 9999999999998764333 33455555544 589999999999986521 111111 25699999999
Q ss_pred HHHHHHHHHHH
Q psy11510 159 QSKFQVLLNEV 169 (171)
Q Consensus 159 ~~~f~~l~~~i 169 (171)
.++++.+.+.+
T Consensus 173 ~~L~~~i~~~l 183 (456)
T 4dcu_A 173 GDLLDAVAEHF 183 (456)
T ss_dssp HHHHHHHHTTG
T ss_pred HHHHHHHHhhc
Confidence 99999987643
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.76 E-value=9.7e-20 Score=150.28 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=98.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
+..+|+++|..++|||||++++.+ .. ..+..+.+|||||++.|..++..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 567899999999999999999986 11 1345789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC---CHHHHHH-------------HHHhhhccCCCHHH
Q psy11510 97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL---TPEDIKN-------------VSEKATKVKLNKQS 160 (171)
Q Consensus 97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~-------------~~~~sa~~~~~v~~ 160 (171)
+|+++....+.... +..+. ..++|+++++||+|+++.. ..+++.. +.++||++|.|+++
T Consensus 83 VDa~dg~~~qt~e~-l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTVES-IQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHHHH-HHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHHHH-HHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99998655544332 22222 2478999999999997521 1122222 23679999999999
Q ss_pred HHHHHHHHH
Q psy11510 161 KFQVLLNEV 169 (171)
Q Consensus 161 ~f~~l~~~i 169 (171)
+|+.+...+
T Consensus 158 Lle~I~~l~ 166 (537)
T 3izy_P 158 LAEATIALA 166 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987653
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=1.3e-17 Score=133.94 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=91.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------c--c------------------------cC----ceEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------I--M------------------------TF----RFKLN 69 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~--~------------------------~~----~~~~~ 69 (171)
.++.++|+++|..++|||||++++.+ + . .. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 45789999999999999999999984 0 0 00 16799
Q ss_pred EEecCCccchhHHHHHhhhCCCEEEEEEeCCC----hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CH
Q psy11510 70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL----TP 141 (171)
Q Consensus 70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~----~~ 141 (171)
+||+||+++|...+......+|++++|+|+++ +++++.+..+ .. ....|+++++||+|+.+.. ..
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-----~~--l~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-----EI--LGIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-----HH--TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-----HH--cCCCeEEEEEEccCCCCHHHHHHHH
Confidence 99999999998877777788999999999985 4455544321 11 1235899999999997632 23
Q ss_pred HHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 142 EDIKNVS-----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 142 ~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
+++.+++ +.||++|.|++++++.+.+.+
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 4555553 459999999999999998654
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=7.3e-18 Score=136.54 Aligned_cols=153 Identities=13% Similarity=0.151 Sum_probs=102.9
Q ss_pred eccceeeeccceecccc----------cccCC-------CCCceeEEEEEeCCCCcHHHHHHHHhc--------------
Q psy11510 12 VGGQKSLRSYSYYGMGM----------LRHRP-------QVSNVAVVSLLRNKNGGETLILKKKKM-------------- 60 (171)
Q Consensus 12 ~~~~~~~~~~~~~~m~~----------~~~~~-------~~~~~~ki~liG~~~~GKttli~~~~~-------------- 60 (171)
+|..+.++.+|.++.|. +.... .....+||+++|++|||||||++++.+
T Consensus 137 lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~ 216 (439)
T 1mky_A 137 LGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216 (439)
T ss_dssp GSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC----
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcC
Confidence 44446677777666655 11111 123468999999999999999999987
Q ss_pred ------cccCceEEEEEecCCccchhHHH------------HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510 61 ------IMTFRFKLNIWDVGGQKSLRSYW------------RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA 122 (171)
Q Consensus 61 ------~~~~~~~~~i~d~~g~~~~~~~~------------~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 122 (171)
+...+..+.+|||+|..+..... ..+++.+|++++|+|+++..+.+.. ++...+.. .
T Consensus 217 d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~ 291 (439)
T 1mky_A 217 DPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---R 291 (439)
T ss_dssp --CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---T
T ss_pred CceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---c
Confidence 12244578899999975443221 3456789999999999887666542 23333332 5
Q ss_pred CCeEEEEEeCCCCCCC--CCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510 123 GATLLVFANKQDIEGA--LTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 123 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i 169 (171)
++|+++|+||+|+.+. ...+++.+.. ++||++|.|++++|+.+.+.+
T Consensus 292 ~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 292 GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999763 2233332221 469999999999999987653
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.76 E-value=7.3e-18 Score=138.00 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=97.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------cccCceEEEEEecCCccchhHHHHHhhh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE 88 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~ 88 (171)
..+.++|+++|..++|||||++++.+ +..++..+.+||+||+++|...+..++.
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence 45689999999999999999999975 1124568999999999999888888899
Q ss_pred CCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH------------H
Q psy11510 89 STDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS------------E 149 (171)
Q Consensus 89 ~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~------------~ 149 (171)
.+|++++|+|+++ +++++.+. ++.. .++|.++|+||+|+.+... .+++.+++ .
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~-----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHML-----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHH-----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hCCEEEEEEecCCCccHHHHHHHH-----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 9999999999988 55554432 1122 3688899999999976211 12233322 3
Q ss_pred hhhccCCCHHHHHHHHHHHH
Q psy11510 150 KATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 150 ~sa~~~~~v~~~f~~l~~~i 169 (171)
.||++|.|++++++.+.+.+
T Consensus 168 vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhh
Confidence 48999999999999998754
No 153
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=127.43 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=84.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCc-----------cchhHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQ-----------KSLRSY 82 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~-----------~~~~~~ 82 (171)
..+.++|+++|.+|||||||++++.+ ....+..+.+|||||. +.+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999998 2234567899999993 334445
Q ss_pred HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCH--------HHHHHHHHh---
Q psy11510 83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEER-LAGATLLVFANKQDIEGALTP--------EDIKNVSEK--- 150 (171)
Q Consensus 83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~--- 150 (171)
+..+++++|++++|+|+++.... ...++..+..... ....|+++|+||+|+.+.... +.+.+..+.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 55566789999999998764331 1222333322110 124699999999998653221 133333321
Q ss_pred ----------hhccCCCHHHHHHHHHHHH
Q psy11510 151 ----------ATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 151 ----------sa~~~~~v~~~f~~l~~~i 169 (171)
++.+..++.++|+.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 2233468888888776543
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.75 E-value=2.3e-18 Score=141.03 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=87.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.+||+++|..++|||||+++++. +...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 45789999999999999999999853 2235
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHH-----HHHHHHHHhccccCCCeEEEEEeCCCCCCC-
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC-----ARELHELLQEERLAGATLLVFANKQDIEGA- 138 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-----~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~- 138 (171)
...+.+|||||+++|...+..+++.+|++++|+|++++.++..+ ..+...+... ....|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccch
Confidence 56899999999999999999999999999999999987543221 1111222222 123579999999999762
Q ss_pred -CCHHH----HHHHH-------------HhhhccCCCHHH
Q psy11510 139 -LTPED----IKNVS-------------EKATKVKLNKQS 160 (171)
Q Consensus 139 -~~~~~----~~~~~-------------~~sa~~~~~v~~ 160 (171)
...++ +..++ ++||++|.|+.+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 11122 22221 459999999985
No 155
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=2.6e-18 Score=132.91 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=89.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc-chhH--------HHHHhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK-SLRS--------YWRNYF 87 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~-~~~~--------~~~~~~ 87 (171)
+..+|+++|.+|||||||++++.+ ....+..+.+|||||.. .... ....++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 455899999999999999999998 12245678999999987 3221 223456
Q ss_pred hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-CC-HHHHHHHH---------HhhhccCC
Q psy11510 88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA-LT-PEDIKNVS---------EKATKVKL 156 (171)
Q Consensus 88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~---------~~sa~~~~ 156 (171)
+.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+... .. .+.+.++. ..||+++.
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 78999999999876 33333444444432 47899999999999761 11 12222222 34899999
Q ss_pred CHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNE 168 (171)
Q Consensus 157 ~v~~~f~~l~~~ 168 (171)
|++++++.+.+.
T Consensus 161 ~v~~l~~~i~~~ 172 (301)
T 1ega_A 161 NVDTIAAIVRKH 172 (301)
T ss_dssp THHHHHHHHHTT
T ss_pred CHHHHHHHHHHh
Confidence 999999998754
No 156
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.74 E-value=1.1e-17 Score=134.30 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=96.5
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhc---------------c--c------------------------cC----ceE
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKM---------------I--M------------------------TF----RFK 67 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~---------------~--~------------------------~~----~~~ 67 (171)
...++.++|+++|..++|||||++++.+ + . .. ...
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 3456789999999999999999999984 0 0 00 167
Q ss_pred EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----
Q psy11510 68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL---- 139 (171)
Q Consensus 68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~---- 139 (171)
+.+||+||+++|.......+..+|++++|+|+++ +++.+.+..+ ..+ ...|+++|+||+|+.+..
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~------~~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII------GQKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH------TCCCEEEEEECGGGSCHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc------CCCcEEEEEECccCCCHHHHHH
Confidence 9999999999998777777788999999999985 4455544321 111 235899999999997632
Q ss_pred CHHHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 140 TPEDIKNVS-----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 140 ~~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
..+++.+++ ..||++|.|++++++.+.+.+
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 123344443 448999999999999988654
No 157
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.74 E-value=3.1e-17 Score=123.48 Aligned_cols=134 Identities=10% Similarity=0.106 Sum_probs=88.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCc--------cchhHHHHH
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQ--------KSLRSYWRN 85 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~--------~~~~~~~~~ 85 (171)
..+.++|+++|.+|||||||++++.+ ....+..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 45789999999999999999999998 2334677899999995 333222222
Q ss_pred h----hhCCCEEEEEEeCCChhhH-HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--------HHHHHHHHh--
Q psy11510 86 Y----FESTDGLIWVVDSADKRRL-EDCARELHELLQEERLAGATLLVFANKQDIEGALTP--------EDIKNVSEK-- 150 (171)
Q Consensus 86 ~----~~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~-- 150 (171)
+ .+.+|++++|+|+++.... ..+.+++..+.. ....+.|+++++||.|+.+..-. +++....+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 2 3899999999999863222 223344444432 22247899999999999763211 122333211
Q ss_pred -----------hhccCCCHHHHHHHHHHHH
Q psy11510 151 -----------ATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 151 -----------sa~~~~~v~~~f~~l~~~i 169 (171)
++..+.++.++++.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 2333688999998886543
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.73 E-value=3.1e-17 Score=129.89 Aligned_cols=130 Identities=19% Similarity=0.155 Sum_probs=92.9
Q ss_pred eeE-EEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCc---------cchhHHHHHhhh
Q psy11510 38 VAV-VSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQ---------KSLRSYWRNYFE 88 (171)
Q Consensus 38 ~~k-i~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~---------~~~~~~~~~~~~ 88 (171)
.++ |+++|.+|||||||++++.+ +..++..+.+|||+|. +.+...++ .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 455 99999999999999999998 2223467899999996 22334433 467
Q ss_pred CCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---HH----HHH-------HHhhh
Q psy11510 89 STDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE---DI----KNV-------SEKAT 152 (171)
Q Consensus 89 ~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~----~~~-------~~~sa 152 (171)
.+|++++|+|++++. ..+.+..+. .++......+.|+++|+||+|+......+ .+ ... ..+||
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~-~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA 335 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSF-EILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISA 335 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHH-HHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHH-HHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 899999999998876 455544433 33344344679999999999997632111 11 122 24699
Q ss_pred ccCCCHHHHHHHHHHHH
Q psy11510 153 KVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 153 ~~~~~v~~~f~~l~~~i 169 (171)
+++.|++++++.+.+.+
T Consensus 336 ~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLA 352 (364)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 99999999999998754
No 159
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.73 E-value=3.5e-17 Score=132.60 Aligned_cols=125 Identities=17% Similarity=0.124 Sum_probs=90.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||+++++. +...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 56789999999999999999999932 2234
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---HH---HHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---LE---DCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
+..+.+|||||+++|...+..+++.+|++++|+|+++... |+ +..+.+..+ . ..++| +++|+||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~---~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-K---TAGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-H---HcCCCeEEEEeecCCCcc
Confidence 5689999999999999988899999999999999988532 11 222222222 1 13566 999999999964
Q ss_pred CC-CH-------HHHHHH--------------HHhhhccCCCHHHHHH
Q psy11510 138 AL-TP-------EDIKNV--------------SEKATKVKLNKQSKFQ 163 (171)
Q Consensus 138 ~~-~~-------~~~~~~--------------~~~sa~~~~~v~~~f~ 163 (171)
.. +. +++.++ ...||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 11 122222 1459999999998654
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.72 E-value=3.2e-18 Score=138.52 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=91.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||++++.. +...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 35689999999999999999999953 1234
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhc---cccCC-CeEEEEEeCCCCCCC-C
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE---ERLAG-ATLLVFANKQDIEGA-L 139 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~-~p~ivv~nK~Dl~~~-~ 139 (171)
...+.+|||||+++|...+..+++.+|++++|+|+++ .+|+....|..+..+. ....+ .|+++++||+|+.+. .
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 5779999999999999989999999999999999998 6777543322222111 11124 468999999999763 1
Q ss_pred CH-------HHHHHHH-------------HhhhccCCCHHHHH
Q psy11510 140 TP-------EDIKNVS-------------EKATKVKLNKQSKF 162 (171)
Q Consensus 140 ~~-------~~~~~~~-------------~~sa~~~~~v~~~f 162 (171)
+. +++.+++ ++||++|.|+.+.+
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 22 2333332 34889999997544
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.72 E-value=2.3e-17 Score=126.69 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=94.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcccc-----------C---------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMIMT-----------F--------------------------------------- 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~~~-----------~--------------------------------------- 64 (171)
.....+|+++|.+|||||||++++.+... .
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999987100 0
Q ss_pred ---------------------ceEEEEEecCCcc-------------chhHHHHHhhhCCCEEE-EEEeCCChhhHHHHH
Q psy11510 65 ---------------------RFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLI-WVVDSADKRRLEDCA 109 (171)
Q Consensus 65 ---------------------~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~s~~~~~ 109 (171)
...+.+|||||.. .+..+...+++.+++++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 2578999999963 45567788888998877 689998765444333
Q ss_pred HHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHH-----------HHHhhhccCCCHHHHHHHHHHH
Q psy11510 110 RELHELLQEERLAGATLLVFANKQDIEGAL--TPEDIKN-----------VSEKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 110 ~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~-----------~~~~sa~~~~~v~~~f~~l~~~ 168 (171)
.++..+ . ..+.|+++|+||+|+.+.. ..+.+.. ..++||++|.|++++|+.+.+.
T Consensus 183 ~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 334443 2 2578999999999997632 2333222 1256999999999999988753
No 162
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.72 E-value=2.5e-17 Score=124.86 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=73.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhh------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE------ 88 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~------ 88 (171)
..+.++|+++|..|+|||||++++.+ ....+..+.+|||||+.++....+.+++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 35789999999999999999999997 3445678999999999877554443332
Q ss_pred ---CCCEEEEEEeCCChhhHHHH-HHHHHHHHhccc-cCCCeEEEEEeCCCCCC
Q psy11510 89 ---STDGLIWVVDSADKRRLEDC-ARELHELLQEER-LAGATLLVFANKQDIEG 137 (171)
Q Consensus 89 ---~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~ 137 (171)
++|++++|++++... +... ..|+..+..... ....|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999887644 3322 344444433211 11359999999999953
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.72 E-value=2.1e-17 Score=126.02 Aligned_cols=128 Identities=9% Similarity=0.089 Sum_probs=75.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-----------------------------cccCceEEEEEecCCc-------cch
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------------IMTFRFKLNIWDVGGQ-------KSL 79 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------------~~~~~~~~~i~d~~g~-------~~~ 79 (171)
...++|+++|.+|+|||||++++.. .++..+.+.+|||||. +.+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4579999999999999999999765 1222358999999997 234
Q ss_pred hHHH-------HHhhhC-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q psy11510 80 RSYW-------RNYFES-------------TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL 139 (171)
Q Consensus 80 ~~~~-------~~~~~~-------------~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~ 139 (171)
..+. ..|+.. +|+++++++.+.......-..++..+ .. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 4443 444443 78999999766522222223334444 22 79999999999986421
Q ss_pred CH----HHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 140 TP----EDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 140 ~~----~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
.. +.+.+.+ ..|+.+++|+.++++.+.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 11 1222222 35899999999999888654
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.72 E-value=4.5e-17 Score=129.24 Aligned_cols=123 Identities=7% Similarity=-0.044 Sum_probs=94.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHH
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~ 108 (171)
+|+++|..++|||||++++.. +...+..+.+|||||+++|.......++.+|++++|+| +. ..+.+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt 100 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHT 100 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHH
Confidence 999999999999999999984 44456789999999999998877778899999999999 44 344555
Q ss_pred HHHHHHHHhccccCCCeE-EEEEe-CCCCCCCCCH----HHHHHHH-----------H--hhhcc---CCCHHHHHHHHH
Q psy11510 109 ARELHELLQEERLAGATL-LVFAN-KQDIEGALTP----EDIKNVS-----------E--KATKV---KLNKQSKFQVLL 166 (171)
Q Consensus 109 ~~~~~~i~~~~~~~~~p~-ivv~n-K~Dl~~~~~~----~~~~~~~-----------~--~sa~~---~~~v~~~f~~l~ 166 (171)
.+++..+.. .++|. ++++| |+|+ +.... +++.+++ . .||++ +.|++++++.+.
T Consensus 101 ~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 101 GECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 555544422 36777 88999 9999 52111 3344332 3 89999 999999999887
Q ss_pred HHH
Q psy11510 167 NEV 169 (171)
Q Consensus 167 ~~i 169 (171)
+.+
T Consensus 176 ~~~ 178 (370)
T 2elf_A 176 EVA 178 (370)
T ss_dssp HHH
T ss_pred hhc
Confidence 653
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.72 E-value=4.5e-17 Score=130.62 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=78.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------cccCceEEEEEecCCccc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------IMTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------~~~~~~~~~i~d~~g~~~ 78 (171)
.++.++|+++|..++|||||++++.. +......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 56789999999999999999999865 122346789999999999
Q ss_pred hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
|......++..+|++++|+|+++.... ...+++..+.. .++| +++++||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccC
Confidence 988888889999999999999886533 33444444422 3678 889999999975
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=7.8e-19 Score=143.81 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=94.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 96 (171)
++..+|+++|..++|||||++++.. +..++..+.+|||||++.|..++...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4567999999999999999999986 222345789999999999999888888999999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHH-------------HHHHHhhhccCCC
Q psy11510 97 VDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDI-------------KNVSEKATKVKLN 157 (171)
Q Consensus 97 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~-------------~~~~~~sa~~~~~ 157 (171)
+|+++ +++.+.+ ... . ..++|+++++||+|+.+.... +++ ..+.++||++|.|
T Consensus 82 Vda~~g~~~qT~e~l----~~~-~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 82 VAADDGVMPQTIEAI----QHA-K---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EETTTBSCTTTHHHH----HHH-H---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred eecccCccHHHHHHH----HHH-H---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 99988 4454433 222 1 257899999999999752110 000 1234679999999
Q ss_pred HHHHHHHHHH
Q psy11510 158 KQSKFQVLLN 167 (171)
Q Consensus 158 v~~~f~~l~~ 167 (171)
++++|+.+..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999998764
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.71 E-value=4.1e-17 Score=130.63 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=92.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS 81 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~ 81 (171)
+.+||+++|..++|||||++++.. +......+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 578999999999999999999975 112346789999999999988
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-----HHHHHHHH-------
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT-----PEDIKNVS------- 148 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~------- 148 (171)
....+++.+|++++|+|+++....+. .+++..+ .. .++| +++++||+|+.+... .+++.+++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888999999999999998543322 2223222 22 3678 789999999975111 12333332
Q ss_pred ------HhhhccCCC----------HHHHHHHHHHH
Q psy11510 149 ------EKATKVKLN----------KQSKFQVLLNE 168 (171)
Q Consensus 149 ------~~sa~~~~~----------v~~~f~~l~~~ 168 (171)
+.||++|.| +.++++.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 347887664 78888887654
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=2.4e-17 Score=137.72 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=94.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc---ccc---------------------------Cc-------eEEEEEecCCccch
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM---IMT---------------------------FR-------FKLNIWDVGGQKSL 79 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~---~~~---------------------------~~-------~~~~i~d~~g~~~~ 79 (171)
+..+|+++|..++|||||++++.+ ... .. ..+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 567999999999999999999987 000 01 14899999999999
Q ss_pred hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhhhccCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKL 156 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~ 156 (171)
..++..+++.+|++++|+|+++ +++++.+.. + .. .++|+++++||+|+...........+.+++++++.
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----L-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----H-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----H-HH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 9988888899999999999999 666665432 2 21 47899999999999753322223346677888888
Q ss_pred CHHHHHHHHHHH
Q psy11510 157 NKQSKFQVLLNE 168 (171)
Q Consensus 157 ~v~~~f~~l~~~ 168 (171)
++.+.|..++..
T Consensus 156 ~v~~~~~e~i~e 167 (594)
T 1g7s_A 156 QVQQKLDTKVYE 167 (594)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777665543
No 169
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.70 E-value=1.5e-16 Score=128.70 Aligned_cols=124 Identities=16% Similarity=0.057 Sum_probs=89.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------cc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------IM 62 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------~~ 62 (171)
.++.++|+++|..++|||||++++.. +.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 45679999999999999999999963 01
Q ss_pred cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--
Q psy11510 63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-- 140 (171)
Q Consensus 63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-- 140 (171)
.....+.+|||||+++|...+..++..+|++++|+|+++.... ...+++..+ ... .-.|+++|+||+|+.+...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~-~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIA-SLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHH-HHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHH-HHc--CCCeEEEEEEcCcCCcccHHH
Confidence 1346789999999999988888889999999999999886432 223333322 221 2246999999999976211
Q ss_pred ----HHHHHHHH-------------HhhhccCCCHHHHH
Q psy11510 141 ----PEDIKNVS-------------EKATKVKLNKQSKF 162 (171)
Q Consensus 141 ----~~~~~~~~-------------~~sa~~~~~v~~~f 162 (171)
.+++.+++ ++||++|.|+.++|
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 12222221 34899999998743
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2e-17 Score=138.75 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=88.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..|+|||||++++.+ +...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 56789999999999999999999973 2234
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
...+.+|||||+++|...+..+++.+|++++|+|++++.. | ....+.+ .++.. ....|+++|+||+|+.+.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~--lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASS--LGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHT--TTCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHH--cCCCeEEEEEecccccch
Confidence 4589999999999999988899999999999999987421 0 1111111 22222 123469999999999762
Q ss_pred C--C----HHHHHHHH-------------HhhhccCCCHHHH
Q psy11510 139 L--T----PEDIKNVS-------------EKATKVKLNKQSK 161 (171)
Q Consensus 139 ~--~----~~~~~~~~-------------~~sa~~~~~v~~~ 161 (171)
. . .+++..++ .+||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 1 12222222 3599999999865
No 171
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.69 E-value=7.5e-17 Score=133.25 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=78.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEecC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDVG 74 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~~ 74 (171)
.+..+|+++|..|+|||||++++.. +...+..+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4679999999999999999999974 12345789999999
Q ss_pred CccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510 75 GQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT 140 (171)
Q Consensus 75 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~ 140 (171)
|+.+|......+++.+|++++|+|+++...-. ....+..+ ...++|+++|+||+|+.....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDRDIRDP 151 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTSCCSCH
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCCccccH
Confidence 99999988888999999999999998864322 22222222 235799999999999987543
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.67 E-value=1.7e-16 Score=129.15 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=88.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||+++++. +...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 45689999999999999999999952 1334
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh---hHH---HHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR---RLE---DCARELHELLQEERLAGAT-LLVFANKQDIEG 137 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~ 137 (171)
...+.+|||||+++|...+..++..+|++++|+|+++.. +|+ ...+.+... .. .++| +++|+||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 578999999999999998888999999999999998753 221 222222222 21 3565 999999999974
Q ss_pred CCCH-------HHHHHHH-------------HhhhccCCCHHHH
Q psy11510 138 ALTP-------EDIKNVS-------------EKATKVKLNKQSK 161 (171)
Q Consensus 138 ~~~~-------~~~~~~~-------------~~sa~~~~~v~~~ 161 (171)
. +. +++.+++ +.||++|.|+.+.
T Consensus 160 ~-~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 W-DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred C-CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 22 1232221 3488999998643
No 173
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.66 E-value=3e-17 Score=129.86 Aligned_cols=128 Identities=9% Similarity=0.120 Sum_probs=70.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc----------------------------cc--cCceEEEEEecCCc-------cc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------IM--TFRFKLNIWDVGGQ-------KS 78 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------~~--~~~~~~~i~d~~g~-------~~ 78 (171)
...++|+++|+.|+|||||++++.+ +. +....+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999754 11 11346899999998 66
Q ss_pred hhHHHH-------HhhhCC-------------CEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 79 LRSYWR-------NYFEST-------------DGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 79 ~~~~~~-------~~~~~~-------------~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+..++. .|++++ |+++|+++.+ ..++..+. .++..+ ..++|+++|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence 776665 666543 4566655532 33454444 333333 25799999999999975
Q ss_pred CCCH----HHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 138 ALTP----EDIKNVS--------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 138 ~~~~----~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
.... +++.+.+ ++||+++.| ++.|..+.+.+.
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 2111 2233322 568999988 888888777653
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.65 E-value=4.3e-15 Score=126.29 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=81.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|+++|..|+|||||++++.. +......+++|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 46789999999999999999999982 23346789999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+|...+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCccc
Confidence 99999999999999999999999987776654443 3322 4799999999999865
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.65 E-value=7.4e-17 Score=131.58 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=78.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||++++.. +..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 45789999999999999999999852 1223
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh---hHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCC-C
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR---RLEDCARELHELLQEERLAGAT-LLVFANKQDIEGA-L 139 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~-~ 139 (171)
+..+.+||+||+++|...+..++..+|++++|+|+++.. +|+....+...+. .....++| +++++||+|+.+. .
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHTTCSSEEEEEECTTSTTCSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHHcCCCEEEEEEECccCCCccc
Confidence 567899999999999888888899999999999999862 2221111111111 11124677 9999999999652 1
Q ss_pred CHH-------HHHHHH---------------HhhhccCCCHHHHH
Q psy11510 140 TPE-------DIKNVS---------------EKATKVKLNKQSKF 162 (171)
Q Consensus 140 ~~~-------~~~~~~---------------~~sa~~~~~v~~~f 162 (171)
+.+ ++.+++ ++||++|.|+.++|
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 221 222221 34889999998755
No 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.64 E-value=5.5e-16 Score=117.91 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=71.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH-------HHHh--
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY-------WRNY-- 86 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~-------~~~~-- 86 (171)
.+.++|+++|.+|+|||||++++.+ .......+.+|||||...+... ...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 4689999999999999999999987 2334567999999998766422 1122
Q ss_pred hhCCCEEEEEEeCCChhhHHHH-HHHHHHHHhccc-cCCCeEEEEEeCCCCCC
Q psy11510 87 FESTDGLIWVVDSADKRRLEDC-ARELHELLQEER-LAGATLLVFANKQDIEG 137 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~ 137 (171)
.+.+|++++|+|++.. ++... ..|+..+..... ....|+++|+||+|+..
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2369999999998653 34332 345555533211 11279999999999865
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.63 E-value=9e-16 Score=134.83 Aligned_cols=129 Identities=15% Similarity=0.072 Sum_probs=94.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL 79 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~ 79 (171)
.++.++|+++|..++|||||++++.. +......+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 56789999999999999999999875 1123467899999999999
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-----HHHHHHHH-----
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT-----PEDIKNVS----- 148 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~----- 148 (171)
......++..+|++++|+|+++.... +..+++..+. . .++| +++++||+|+.+... .+++.+++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~-~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGR-Q---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHH-H---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHH-H---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 88888889999999999999885432 2333343332 1 3678 789999999975211 12333333
Q ss_pred --------HhhhccC--------CCHHHHHHHHHHH
Q psy11510 149 --------EKATKVK--------LNKQSKFQVLLNE 168 (171)
Q Consensus 149 --------~~sa~~~--------~~v~~~f~~l~~~ 168 (171)
+.||++| .|+.++++.+.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 3488888 4688888887653
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.63 E-value=6e-15 Score=124.93 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=78.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|+++|+.|+|||||++++.. +....+.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 35678999999999999999999982 23346789999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
+|...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 999989999999999999999887544332 233444422 479999999999986
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1.3e-15 Score=111.03 Aligned_cols=132 Identities=15% Similarity=0.066 Sum_probs=88.8
Q ss_pred CCCCceeEEEEEeCCCCcHHHHHHHHhccc---------cCce---------EEEEEecCCccc----------hhHHHH
Q psy11510 33 PQVSNVAVVSLLRNKNGGETLILKKKKMIM---------TFRF---------KLNIWDVGGQKS----------LRSYWR 84 (171)
Q Consensus 33 ~~~~~~~ki~liG~~~~GKttli~~~~~~~---------~~~~---------~~~i~d~~g~~~----------~~~~~~ 84 (171)
.+..+..+|+++|++|||||||++++.+.. +... .+.+||+||... ++....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 335677899999999999999999998711 0000 368999999742 333333
Q ss_pred Hhh---hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHH---------
Q psy11510 85 NYF---ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL----TPEDIKNVS--------- 148 (171)
Q Consensus 85 ~~~---~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~--------- 148 (171)
.++ ..++++++++|++.+.++... .+...+. ..+.|+++++||+|+...- ..+.++..+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 444 468999999999886554321 1122222 2478999999999986521 112333332
Q ss_pred -HhhhccCCCHHHHHHHHHHHH
Q psy11510 149 -EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 149 -~~sa~~~~~v~~~f~~l~~~i 169 (171)
.+|++++.|++++++.+.+.+
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeecCCCCHHHHHHHHHHHH
Confidence 469999999999999987653
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.60 E-value=3.9e-15 Score=115.14 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=62.7
Q ss_pred eEEEEEecCCccc-------------hhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510 66 FKLNIWDVGGQKS-------------LRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFAN 131 (171)
Q Consensus 66 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~n 131 (171)
..+.+|||||... +......+++++|++++|+|+++.. .-.....++..+ . ..+.|+++|+|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v~N 206 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGVIT 206 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEEEc
Confidence 3689999999753 4556778889999999999974322 111111222222 2 24789999999
Q ss_pred CCCCCCCCC--HHHHHHH-----H------Hhhhcc---CCCHHHHHHHHHHH
Q psy11510 132 KQDIEGALT--PEDIKNV-----S------EKATKV---KLNKQSKFQVLLNE 168 (171)
Q Consensus 132 K~Dl~~~~~--~~~~~~~-----~------~~sa~~---~~~v~~~f~~l~~~ 168 (171)
|+|+.+... .+.+... . ..|+.+ +.|+.++++.+.+.
T Consensus 207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~ 259 (315)
T 1jwy_B 207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259 (315)
T ss_dssp CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence 999976322 2323211 0 225566 78999998876553
No 181
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=113.02 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=74.2
Q ss_pred cCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHH---HHHHhccc-cCCCeEEEEEeCC-CCCCCCCHHHHHHH
Q psy11510 73 VGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAREL---HELLQEER-LAGATLLVFANKQ-DIEGALTPEDIKNV 147 (171)
Q Consensus 73 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~---~~i~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~ 147 (171)
.+||++++++|+.||+++|++|||+|++|...++ ..+.+ ..++.+.. ..++|++|++||. |++.+++..++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 4589999999999999999999999999987655 55555 45555443 4789999999995 89999999999888
Q ss_pred H------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 148 S------------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 148 ~------------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+ .+||.+|+|+.+-++|+++.+.
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 7 5699999999999999987653
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.59 E-value=1.6e-16 Score=132.83 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=74.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF 64 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~ 64 (171)
.++.++|+++|..++|||||+++|+. +...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 56789999999999999999999952 2223
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----------RRLEDCARELHELLQEERLAGAT-LLVFANKQ 133 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~ 133 (171)
+..+.+|||||+++|......++..+|++++|+|++++ ++.+.+ ..+ .. .++| +++|+||+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~-~~---lgip~iIvviNKi 325 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLL-RA---LGISEIVVSVNKL 325 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHH-HH---SSCCCEEEEEECG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHH-HH---cCCCeEEEEEecc
Confidence 46789999999999988777888899999999999853 333222 122 21 3565 99999999
Q ss_pred CCCCCCC------HHHHHHHH--------------HhhhccCCCHH
Q psy11510 134 DIEGALT------PEDIKNVS--------------EKATKVKLNKQ 159 (171)
Q Consensus 134 Dl~~~~~------~~~~~~~~--------------~~sa~~~~~v~ 159 (171)
|+.+... .+++..++ .+||++|.|+.
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9975211 12333333 45999999998
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.59 E-value=7.6e-15 Score=124.83 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=51.1
Q ss_pred EEEEEecCCccc---hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 67 KLNIWDVGGQKS---LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 67 ~~~i~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
.+.+|||||... ....+..+++++|++++|+|++++.+..+...|...+ .. .+.|+++|+||+|+..
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGG
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECccccc
Confidence 588999999655 3446667889999999999999887777655443333 22 3678999999999864
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.57 E-value=1.5e-14 Score=116.25 Aligned_cols=131 Identities=18% Similarity=0.123 Sum_probs=92.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccch----hHHH---HHhhhCCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKSL----RSYW---RNYFESTD 91 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~~----~~~~---~~~~~~~~ 91 (171)
-.|+++|++|||||||++.+.+ +... ...+.+||++|.... ..+. ......++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 4589999999999999999987 1112 256889999997321 1121 22345799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510 92 GLIWVVDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSKF 162 (171)
Q Consensus 92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~f 162 (171)
.+++|+|++ ...++.+..+..++.... ...+.|.++|+||+|+......+++.+.+ ..||+++.|+++++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALK 316 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHH
Confidence 999999998 556777766666654321 12368999999999997642222333333 35999999999999
Q ss_pred HHHHHHHh
Q psy11510 163 QVLLNEVS 170 (171)
Q Consensus 163 ~~l~~~i~ 170 (171)
+.+.+.+.
T Consensus 317 ~~i~~~l~ 324 (416)
T 1udx_A 317 EALHALVR 324 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=3e-14 Score=121.13 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=81.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~ 77 (171)
..+..+|+++|..|+|||||++++.. +...+..+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45789999999999999999999983 12235679999999999
Q ss_pred chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
+|...+..+++.+|++++|+|+++..+......| ..+.. .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 9999899999999999999999987776655443 33322 47899999999999874
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.56 E-value=2.3e-15 Score=124.97 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=76.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcccc--------------------Cc-----------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMIMT--------------------FR----------------------------- 65 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~~~--------------------~~----------------------------- 65 (171)
.....+|+++|..|+|||||++++.+... ..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 34678999999999999999999987110 00
Q ss_pred ------------eEEEEEecCCccc-----------hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510 66 ------------FKLNIWDVGGQKS-----------LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA 122 (171)
Q Consensus 66 ------------~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 122 (171)
..+.+|||||... +...+..++..+|++++|+|+++....+....++..+.. .
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----H 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----C
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----c
Confidence 2578999999865 556777888999999999999875444555555555522 3
Q ss_pred CCeEEEEEeCCCCCC
Q psy11510 123 GATLLVFANKQDIEG 137 (171)
Q Consensus 123 ~~p~ivv~nK~Dl~~ 137 (171)
+.|+++|+||+|+..
T Consensus 218 ~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 EDKIRVVLNKADMVE 232 (550)
T ss_dssp GGGEEEEEECGGGSC
T ss_pred CCCEEEEEECCCccC
Confidence 689999999999965
No 187
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.54 E-value=1e-14 Score=126.24 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=81.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcc-----------------------------------cc----------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMI-----------------------------------MT---------------- 63 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~-----------------------------------~~---------------- 63 (171)
..+..||+++|..++|||||++++... ..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 456789999999999999999999750 01
Q ss_pred CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
....+++|||||+.+|...+..+++.+|++++|+|+++..+++....|. .... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcch
Confidence 1567899999999999999999999999999999999988887755443 3322 4789999999999863
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.54 E-value=6e-14 Score=119.44 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=78.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCc-------eEEEE
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFR-------FKLNI 70 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~-------~~~~i 70 (171)
..+..+|+++|..|+|||||++++.. +.... ..+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 45678999999999999999999952 11122 78899
Q ss_pred EecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 71 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 71 ~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
|||||+.+|...+..+++.+|++++|+|+++....+....| .... ..++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN----KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH----HcCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999987655443332 3332 247899999999999764
No 189
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.53 E-value=6.1e-15 Score=112.28 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=79.1
Q ss_pred cCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHH---HHHhccc-cCCCeEEEEEeC-CCCCCCCCHHHHHHH
Q psy11510 73 VGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH---ELLQEER-LAGATLLVFANK-QDIEGALTPEDIKNV 147 (171)
Q Consensus 73 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~---~i~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~ 147 (171)
.+||+..+++|..|++++|++|||+|++|.++++ ..+.+. .++++.. ..++|++|++|| +|++++++..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4789999999999999999999999999988765 444333 5555433 478999999996 699999999999888
Q ss_pred H------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 148 S------------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 148 ~------------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+ .+||.+|+|+.+-++|+++.+.
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 7 5699999999999999998763
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.53 E-value=3.3e-13 Score=111.92 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV 73 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~ 73 (171)
..+.-+|.++|..++|||||..+++. +.+.+..++++||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 34678999999999999999999974 5667889999999
Q ss_pred CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
||+.+|..-....++-+|+.++|+|+...-.-+.-.-| .... ..++|.++++||+|.+.
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~----~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCR----MRATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHH----HTTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHH----HhCCceEEEEecccchh
Confidence 99999999888889999999999999986554443333 3332 25899999999999865
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=2.1e-14 Score=113.13 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=85.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhccc-------------c---------------------------------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMIM-------------T--------------------------------------- 63 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~~-------------~--------------------------------------- 63 (171)
....+|+++|.+|||||||++++.+.. .
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999998710 0
Q ss_pred -------------------CceEEEEEecCCcc-------------chhHHHHHhhhCCCEEEE-EEeCCChhhHHHHHH
Q psy11510 64 -------------------FRFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLIW-VVDSADKRRLEDCAR 110 (171)
Q Consensus 64 -------------------~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii~-v~d~~~~~s~~~~~~ 110 (171)
....+.+|||||.. .+..+...|+.+++.+++ |+|++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 02468999999953 455677788877776655 556554222112212
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHH-----------HHHhhhccCCCHHHHHHHHHH
Q psy11510 111 ELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKN-----------VSEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 111 ~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~-----------~~~~sa~~~~~v~~~f~~l~~ 167 (171)
++..+ ...+.|+++|+||+|+.+.-. .+.+.. ...+||+++.|++++++.+.+
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 23333 235799999999999975322 221111 125699999999999998875
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.49 E-value=7.5e-14 Score=110.22 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=48.6
Q ss_pred EEEEEecCCccch-------------hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 67 KLNIWDVGGQKSL-------------RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 67 ~~~i~d~~g~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
.+.+|||||..++ ..+...|++++|++++|+|.++..... ..|+ .++......+.|+++|+||+
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~-~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI-KISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHH-HHHHHSCTTCTTEEEEEECG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHH-HHHHHhcccCCCEEEEEeCC
Confidence 4789999998776 667888999999999999876543221 1122 22222333578999999999
Q ss_pred CCCC
Q psy11510 134 DIEG 137 (171)
Q Consensus 134 Dl~~ 137 (171)
|+.+
T Consensus 214 Dl~~ 217 (360)
T 3t34_A 214 DLMD 217 (360)
T ss_dssp GGCC
T ss_pred ccCC
Confidence 9865
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.49 E-value=4.7e-14 Score=111.29 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=86.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------ 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------ 60 (171)
..+..+|+++|.+|+|||||++++..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 34678999999999999999999853
Q ss_pred -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
....+..+.+|||||... ........+|++++|+|....+.++.+. ....+.|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 012357789999999533 2234458899999999987765443221 11124699999
Q ss_pred EeCCCCCCCCCH----HHHHHH---------------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 130 ANKQDIEGALTP----EDIKNV---------------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 130 ~nK~Dl~~~~~~----~~~~~~---------------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
+||+|+.+.... +++... +.+||++|.|++++++.+.+.+
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999652111 222222 1369999999999999987654
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=2.8e-14 Score=110.24 Aligned_cols=128 Identities=8% Similarity=0.127 Sum_probs=71.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc------------------------------ccCceEEEEEecCCc-------cc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI------------------------------MTFRFKLNIWDVGGQ-------KS 78 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~------------------------------~~~~~~~~i~d~~g~-------~~ 78 (171)
.-.++|+++|+.|||||||++++.+. ......+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999997540 111346799999998 55
Q ss_pred hhHHHH-------HhhhC-------------CCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 79 LRSYWR-------NYFES-------------TDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 79 ~~~~~~-------~~~~~-------------~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
+..+.. .+++. +++++++.+.+. .+++... +.+..+ ..+.|+++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCCCCC
Confidence 655554 44432 355566555332 1233322 223333 14679999999999965
Q ss_pred C--C--CHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 138 A--L--TPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 138 ~--~--~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
. . ..+++.+.+ ++||++| |++++|..+++.+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 2 1 123344443 5699999 99999999988764
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.47 E-value=1.4e-14 Score=111.93 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=77.5
Q ss_pred EEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH
Q psy11510 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK 145 (171)
Q Consensus 67 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 145 (171)
.+.+||+ +++++.+++.+++++|++++|||++++. +++.+..|+..+.. .++|+++|+||+|+.+....+++.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~ 137 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVR 137 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHH
Confidence 6789999 8999999999999999999999999987 78888899887633 479999999999997532212222
Q ss_pred H---H-------HHhhhccCCCHHHHHHHHHHH
Q psy11510 146 N---V-------SEKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 146 ~---~-------~~~sa~~~~~v~~~f~~l~~~ 168 (171)
+ . .++||++|.|++++|..+...
T Consensus 138 ~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 138 ELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 2 2 257999999999999887543
No 196
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=2.1e-14 Score=114.80 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=44.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc------------------c-c----------------------c--CceEEEEEecCC
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM------------------I-M----------------------T--FRFKLNIWDVGG 75 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~------------------~-~----------------------~--~~~~~~i~d~~g 75 (171)
++|+++|.+|||||||++++.+ . . . ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999987 0 0 0 025789999999
Q ss_pred ccc----hhHHHHH---hhhCCCEEEEEEeCCCh
Q psy11510 76 QKS----LRSYWRN---YFESTDGLIWVVDSADK 102 (171)
Q Consensus 76 ~~~----~~~~~~~---~~~~~~~ii~v~d~~~~ 102 (171)
... .+.+... +++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 2223333 36889999999999875
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.46 E-value=5.9e-14 Score=103.07 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=81.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc---------------------------------------------------ccC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI---------------------------------------------------MTF 64 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~---------------------------------------------------~~~ 64 (171)
.+..+|+++|..|||||||++++..- ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 35679999999999999999999750 001
Q ss_pred ceEEEEEecCCccchhHHHHHhh-hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCH
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYF-ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTP 141 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~ 141 (171)
...+.+|||+|+.. .+.++ ...+.+++|+|++..... ...+ ... .+.|.++|+||+|+.+. ...
T Consensus 108 ~~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 108 DCDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TCSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHH
Confidence 23456777776411 11122 257888999998765321 1111 111 24789999999999642 455
Q ss_pred HHHHHHH----------HhhhccCCCHHHHHHHHHHHHh
Q psy11510 142 EDIKNVS----------EKATKVKLNKQSKFQVLLNEVS 170 (171)
Q Consensus 142 ~~~~~~~----------~~sa~~~~~v~~~f~~l~~~i~ 170 (171)
+++.+.+ ++||++|.|++++|+.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 5554443 4599999999999999987653
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.46 E-value=2.7e-13 Score=102.03 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=85.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHh-----c-----cc--c---------------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKK-----M-----IM--T--------------------------------------- 63 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~-----~-----~~--~--------------------------------------- 63 (171)
..+...+++.|.+||||||++..+. + ++ .
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 5567889999999999999999997 3 11 0
Q ss_pred ----------------CceEEEEEecCCccchhHHHH------HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhcccc
Q psy11510 64 ----------------FRFKLNIWDVGGQKSLRSYWR------NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERL 121 (171)
Q Consensus 64 ----------------~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~ 121 (171)
..+.+.+|||||+........ ..+.+ +++++++|+....+.................
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 023789999999876544321 23456 8999999875432222221111111111112
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHH--------------------------------------HHHhhhccCCCHHHHHH
Q psy11510 122 AGATLLVFANKQDIEGALTPEDIKN--------------------------------------VSEKATKVKLNKQSKFQ 163 (171)
Q Consensus 122 ~~~p~ivv~nK~Dl~~~~~~~~~~~--------------------------------------~~~~sa~~~~~v~~~f~ 163 (171)
.+.|+++|+||+|+......+++.+ ..+.||+++.|++++++
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 3689999999999865321111111 11458999999999999
Q ss_pred HHHHHH
Q psy11510 164 VLLNEV 169 (171)
Q Consensus 164 ~l~~~i 169 (171)
.+.+.+
T Consensus 250 ~i~~~~ 255 (262)
T 1yrb_A 250 LAYEHY 255 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997654
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=111.04 Aligned_cols=127 Identities=9% Similarity=0.091 Sum_probs=60.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc---------------------------c--cCceEEEEEecCCccchh------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI---------------------------M--TFRFKLNIWDVGGQKSLR------ 80 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~---------------------------~--~~~~~~~i~d~~g~~~~~------ 80 (171)
.-.++|+++|++|||||||++.+.+. . .....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34578999999999999999999871 0 111357899999976541
Q ss_pred -HHH------------------HHhhhCCCE--EEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 81 -SYW------------------RNYFESTDG--LIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 81 -~~~------------------~~~~~~~~~--ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
.+. ..++.++++ ++++.+.+. .++.... .|+..+. .++|+++|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH
Confidence 111 112334444 444443321 2343333 4555552 37999999999998642
Q ss_pred --CCH--HHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510 139 --LTP--EDIKNVS--------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 139 --~~~--~~~~~~~--------~~sa~~~~~v~~~f~~l~~~ 168 (171)
+.. +++.+.+ ++|++++.++.++|..+.+.
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 111 2222222 55889999999988877654
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=103.21 Aligned_cols=121 Identities=11% Similarity=0.059 Sum_probs=78.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc------------------------------------------------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI------------------------------------------------------ 61 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~------------------------------------------------------ 61 (171)
.....|+++|.+|||||||++++.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999840
Q ss_pred -----------ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 62 -----------MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 62 -----------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
...+..+.++||+|.... .......+|.+++|+|++.+...+.+.. .+ -+.|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 012345689999995321 2344678999999999987643322211 22 245889999
Q ss_pred eCCCCCCCCC----HHHHHH---------------HHHhhhccCCCHHHHHHHHHHH
Q psy11510 131 NKQDIEGALT----PEDIKN---------------VSEKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 131 nK~Dl~~~~~----~~~~~~---------------~~~~sa~~~~~v~~~f~~l~~~ 168 (171)
||+|+.+... ..++.. .+.+||++|.|++++++.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 9999964211 111211 1246999999999999998764
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.40 E-value=5.6e-13 Score=104.59 Aligned_cols=123 Identities=12% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-------------------c----------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------I---------------------------------- 61 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~---------------------------------- 61 (171)
..+...|+++|.+|+||||+++.+.. .
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 35678899999999999999999953 0
Q ss_pred ------------ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 62 ------------MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 62 ------------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
...+..+.++||||...... .....+|++++|+|++....++.+.. .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 02246789999999654433 24688999999999876543221111 11 14688999
Q ss_pred EeCCCCCCCCCHH----HHHHH---------------HHhhhccCCCHHHHHHHHHHHH
Q psy11510 130 ANKQDIEGALTPE----DIKNV---------------SEKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 130 ~nK~Dl~~~~~~~----~~~~~---------------~~~sa~~~~~v~~~f~~l~~~i 169 (171)
+||+|+.+..... ++.+. +..||++|.|++++++.+.+.+
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9999997631111 22221 2468999999999999987653
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.39 E-value=9.8e-13 Score=110.93 Aligned_cols=94 Identities=21% Similarity=0.266 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhH
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRS 81 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~ 81 (171)
.+|.++|..++|||||..+++. +..++..+++.||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5789999999999999999975 566778899999999999999
Q ss_pred HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
.....++-+|+.++|+|+...-.-+.- ..++.... .++|.++++||.|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~----~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRK----MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHH----HTCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEecccccc
Confidence 888889999999999999885443332 22333322 3789999999999865
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=4e-11 Score=94.61 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=49.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-----------------ceEEEEEecCCccchhH-
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-----------------RFKLNIWDVGGQKSLRS- 81 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-----------------~~~~~i~d~~g~~~~~~- 81 (171)
++|+++|.+|||||||++++.+ +..+ +..+.+||+||+.++.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999987 0111 14699999999877542
Q ss_pred ---H---HHHhhhCCCEEEEEEeCCC
Q psy11510 82 ---Y---WRNYFESTDGLIWVVDSAD 101 (171)
Q Consensus 82 ---~---~~~~~~~~~~ii~v~d~~~ 101 (171)
+ ...+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 2345789999999999986
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.27 E-value=5.7e-11 Score=101.33 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=79.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------c-------ccCceEEEEE
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------I-------MTFRFKLNIW 71 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~-------~~~~~~~~i~ 71 (171)
.+.-+|.++|..++|||||..+++. + ...+..++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 4667999999999999999999986 1 1236789999
Q ss_pred ecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510 72 DVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138 (171)
Q Consensus 72 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~ 138 (171)
||||+-+|..--...++-+|+.++|+|+...-.-+.-.- ++...+ .++|.++++||.|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----HTCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHH----cCCCeEEEEccccccCc
Confidence 999999999988888999999999999988654443322 333333 47999999999999774
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.1e-11 Score=96.69 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=70.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----H---HHHhhhCCC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----Y---WRNYFESTD 91 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----~---~~~~~~~~~ 91 (171)
..+|.++|.+|||||||++.+.+ +...+.++.+.|+||--.... . .-...+.||
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 46899999999999999999998 455678899999999532211 1 123457899
Q ss_pred EEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510 92 GLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIE 136 (171)
Q Consensus 92 ~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~ 136 (171)
++++|+|++++.. .+.+...+... .......|.+++.||.|..
T Consensus 152 ~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 152 LLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred ccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence 9999999998743 23333333333 2233567888999999974
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.25 E-value=1.5e-12 Score=95.74 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=35.7
Q ss_pred CeEEEEEeCCCCCCC--CCHHHHHHHH----------HhhhccCCCHHHHHHHHHHHH
Q psy11510 124 ATLLVFANKQDIEGA--LTPEDIKNVS----------EKATKVKLNKQSKFQVLLNEV 169 (171)
Q Consensus 124 ~p~ivv~nK~Dl~~~--~~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~i 169 (171)
.|.++|+||+|+.+. ...+++...+ ++||++|.|++++|+.+.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 566999999998652 4555554443 469999999999999998765
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.23 E-value=5.4e-11 Score=94.15 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=49.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhccc----------------------------------------cCceEEEEEecCCccc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKMIM----------------------------------------TFRFKLNIWDVGGQKS 78 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~~~----------------------------------------~~~~~~~i~d~~g~~~ 78 (171)
++|+++|.+|||||||++++.+.. .....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 579999999999999999998600 0134699999999866
Q ss_pred hh-------HHHHHhhhCCCEEEEEEeCCC
Q psy11510 79 LR-------SYWRNYFESTDGLIWVVDSAD 101 (171)
Q Consensus 79 ~~-------~~~~~~~~~~~~ii~v~d~~~ 101 (171)
+. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223345789999999999975
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.20 E-value=5.8e-11 Score=101.39 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=86.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcccc----------------------------------------------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMIMT---------------------------------------------------- 63 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~~~---------------------------------------------------- 63 (171)
....+|+++|..++||||+++.+.+...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4567999999999999999999987000
Q ss_pred -------------------CceEEEEEecCCccc-------------hhHHHHHhh-hCCCEEEEEEeCCChhhHHHHHH
Q psy11510 64 -------------------FRFKLNIWDVGGQKS-------------LRSYWRNYF-ESTDGLIWVVDSADKRRLEDCAR 110 (171)
Q Consensus 64 -------------------~~~~~~i~d~~g~~~-------------~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~ 110 (171)
....+.++||||-.. ...+...|+ ..+|++++|+|++....-.....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 011367899999433 223444555 47899999999987533322222
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHH------------HHHhhhccCCCHHHHHHHHHH
Q psy11510 111 ELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKN------------VSEKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 111 ~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~------------~~~~sa~~~~~v~~~f~~l~~ 167 (171)
.+..+ ...+.|+++|+||+|+.+.-. ...+.. ....||++|.|++++++.+.+
T Consensus 209 ll~~L----~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHH----CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHH----HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 23333 224789999999999976321 112211 113599999999999998876
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=4.5e-10 Score=87.96 Aligned_cols=122 Identities=9% Similarity=0.034 Sum_probs=78.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc---------------c---c----------------------------------
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM---------------I---M---------------------------------- 62 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~---~---------------------------------- 62 (171)
..+...+.++|++|||||||++.+.+ . .
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 34567899999999999999999974 0 0
Q ss_pred -------------cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 63 -------------TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 63 -------------~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
..+..+.++||+|...-. ......+|.+++|+|....+..+.+... + .+.|.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEE
Confidence 024568899999965322 2335789999999998654322211111 1 12356777
Q ss_pred EeCCCCCCCCC-----HHHHHHH---------------HHhhhccCCCHHHHHHHHHHH
Q psy11510 130 ANKQDIEGALT-----PEDIKNV---------------SEKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 130 ~nK~Dl~~~~~-----~~~~~~~---------------~~~sa~~~~~v~~~f~~l~~~ 168 (171)
.||+|+..... .+++... +.+||+++.|++++++.+.+.
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999743211 1122211 135899999999999988654
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.07 E-value=5.2e-11 Score=91.93 Aligned_cols=102 Identities=12% Similarity=-0.093 Sum_probs=76.7
Q ss_pred ccCceEEEEEe-cCC-----ccchhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510 62 MTFRFKLNIWD-VGG-----QKSLRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQD 134 (171)
Q Consensus 62 ~~~~~~~~i~d-~~g-----~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 134 (171)
-++.+.+..+| +.| ++++..+.+.++.++|++++|+|++++. +++.+.+|+..+.. .++|+++|+||+|
T Consensus 46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~D 121 (302)
T 2yv5_A 46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKID 121 (302)
T ss_dssp BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGG
T ss_pred CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEccc
Confidence 34556667776 333 6777777788999999999999999886 88888888886633 5899999999999
Q ss_pred CCCCC--C-HHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510 135 IEGAL--T-PEDIKNVS--------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 135 l~~~~--~-~~~~~~~~--------~~sa~~~~~v~~~f~~l~~ 167 (171)
+.+.. . .++..+.+ ++||++|.|++++|+.+..
T Consensus 122 L~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 122 LLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp GCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred CCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 96531 1 22333332 4699999999999987653
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.03 E-value=3.2e-10 Score=90.32 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=48.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcc-------------------ccC-----------------ceEEEEEecCCccc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMI-------------------MTF-----------------RFKLNIWDVGGQKS 78 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~-------------------~~~-----------------~~~~~i~d~~g~~~ 78 (171)
.....+|.++|.+|||||||++++.+. ..+ ...+.+||+||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 345689999999999999999999871 000 23489999999876
Q ss_pred hhH-------HHHHhhhCCCEEEEEEeCCChhh
Q psy11510 79 LRS-------YWRNYFESTDGLIWVVDSADKRR 104 (171)
Q Consensus 79 ~~~-------~~~~~~~~~~~ii~v~d~~~~~s 104 (171)
..+ .+..+++++|++++|+|+++..+
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 554 45677899999999999876433
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.82 E-value=2.7e-08 Score=81.63 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=78.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------c-----------------------c-----------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------I-----------------------M----------------- 62 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------~-----------------------~----------------- 62 (171)
.+...|+++|.+||||||++.++.. . .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999983 0 0
Q ss_pred --cCceEEEEEecCCccchh-HHHHH---h--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeE-EEEEeCC
Q psy11510 63 --TFRFKLNIWDVGGQKSLR-SYWRN---Y--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL-LVFANKQ 133 (171)
Q Consensus 63 --~~~~~~~i~d~~g~~~~~-~~~~~---~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~ 133 (171)
..+..+.++||||..... .++.. . ...+|.+++|+|+......... ...+ .. ..|+ .+|.||.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCC
Confidence 034578999999975321 12211 1 2279999999999875432111 2222 11 1564 7889999
Q ss_pred CCCCCCCH-HHHHH-----------------------HHHhhhccCCC-HHHHHHHHHH
Q psy11510 134 DIEGALTP-EDIKN-----------------------VSEKATKVKLN-KQSKFQVLLN 167 (171)
Q Consensus 134 Dl~~~~~~-~~~~~-----------------------~~~~sa~~~~~-v~~~f~~l~~ 167 (171)
|....... -++.. ....|+..|.| +.++++.+.+
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 98753221 11111 12457888888 8888887754
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.58 E-value=2e-07 Score=74.90 Aligned_cols=26 Identities=4% Similarity=-0.059 Sum_probs=22.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....++++++|+.|+|||||++.+.+
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 34456799999999999999999987
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.58 E-value=9.2e-08 Score=75.65 Aligned_cols=109 Identities=12% Similarity=0.046 Sum_probs=63.5
Q ss_pred cHHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510 50 GETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129 (171)
Q Consensus 50 GKttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv 129 (171)
||+.+.+|...+.+-+. +.-.+ ..+++|+.+.+.+++.++++++|+|++++. ..|...+.+. ..++|+++|
T Consensus 32 ~~~~~C~Rc~~l~hy~~-~~~v~-~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV 102 (368)
T 3h2y_A 32 KEQVICQRCFRLKHYNE-IQDVS-LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLV 102 (368)
T ss_dssp --------------------------CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEE
T ss_pred CCCcEEhhhhhhhccCc-cccCC-CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEE
Confidence 45777777766322111 11112 356889999999999999999999999853 2333333221 247899999
Q ss_pred EeCCCCCC-CCCHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510 130 ANKQDIEG-ALTPEDIKNVS---------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 130 ~nK~Dl~~-~~~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~ 167 (171)
+||+|+.+ ....+++.++. .+||++|.|++++++.+.+
T Consensus 103 ~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 103 GNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp EECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred EEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 99999965 33444444432 3499999999999998865
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.56 E-value=3.4e-07 Score=69.43 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.++++++|+.|+|||||++.+.+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999998
No 216
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.54 E-value=3e-07 Score=73.28 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=50.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccC-----------------ceEEEEEecCCcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTF-----------------RFKLNIWDVGGQK 77 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~-----------------~~~~~i~d~~g~~ 77 (171)
..+..++.++|++|||||||++.+.+ +... +..+.+||++|..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45678999999999999999999987 0001 1357899999943
Q ss_pred c-------hhHHHHHhhhCCCEEEEEEeCCC
Q psy11510 78 S-------LRSYWRNYFESTDGLIWVVDSAD 101 (171)
Q Consensus 78 ~-------~~~~~~~~~~~~~~ii~v~d~~~ 101 (171)
. +...+...++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 33345566789999999999864
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.45 E-value=2.1e-08 Score=79.37 Aligned_cols=106 Identities=8% Similarity=0.060 Sum_probs=64.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-------------ccc---------CceEEEEEecCCccchhH--------HHHHhh
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-------------IMT---------FRFKLNIWDVGGQKSLRS--------YWRNYF 87 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-------------~~~---------~~~~~~i~d~~g~~~~~~--------~~~~~~ 87 (171)
..+|+++|.+|+|||||++.+.+ ..+ -.-.+.++||||-..... ....++
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 46899999999999999999986 000 011257999999532221 122222
Q ss_pred --hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 88 --ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 88 --~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
+..++++++++......+..+.. +......+.|++++.||.|.......+...+.+
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~ 299 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLY 299 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHH
T ss_pred cccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHH
Confidence 57899999999743211111100 122223578999999999986533333333333
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.44 E-value=2.3e-07 Score=73.39 Aligned_cols=108 Identities=13% Similarity=0.041 Sum_probs=62.7
Q ss_pred HHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510 51 ETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFA 130 (171)
Q Consensus 51 Kttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 130 (171)
|+.+.+|...+.+-+. +. +....+++|+...+.++++++++++|+|++++.+ .|...+.+. ..+.|+++|+
T Consensus 35 ~~~~C~RC~~l~hy~~-~~-~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~ 105 (369)
T 3ec1_A 35 EEVICQRCFRLKHYNE-VQ-DVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVG 105 (369)
T ss_dssp --------------------------CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEE
T ss_pred CCEEchhHHHhhcccc-cc-CCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEE
Confidence 4566666665222111 11 2223588999999999999999999999999763 222222111 2478999999
Q ss_pred eCCCCCCC-CCHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510 131 NKQDIEGA-LTPEDIKNVS---------------EKATKVKLNKQSKFQVLLN 167 (171)
Q Consensus 131 nK~Dl~~~-~~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~ 167 (171)
||+|+.+. ...+.+.++. .+||++|.|++++++.+.+
T Consensus 106 NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 106 NKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp ECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred EChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 99999763 3444444432 3499999999999998864
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.38 E-value=1.3e-07 Score=74.88 Aligned_cols=106 Identities=7% Similarity=-0.005 Sum_probs=65.3
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhcc-----------------ccC------ceEEEEEecCCccchhH--------HHHHh
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKMI-----------------MTF------RFKLNIWDVGGQKSLRS--------YWRNY 86 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~~-----------------~~~------~~~~~i~d~~g~~~~~~--------~~~~~ 86 (171)
..+|+++|.+|+|||||++++.+. ... .-.+.++||||-..... ....+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 468999999999999999999760 000 01257999999533221 11111
Q ss_pred --hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 87 --FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 87 --~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
.+..+.++++++......+..+. . +......+.|++++.||.|.......+...+.+
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~----~-~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~ 298 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLA----R-FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY 298 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTE----E-EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred ccccccCceEEEEcCCCEEEEcceE----E-EEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence 25688899999874321111110 0 122223578999999999987655555555554
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.37 E-value=2.6e-06 Score=68.80 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=60.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------c
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------I 61 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~ 61 (171)
+...|+++|.+|+||||++..+.. .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999874 0
Q ss_pred ccCceEEEEEecCCccchhH-HH---H--HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 62 MTFRFKLNIWDVGGQKSLRS-YW---R--NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 62 ~~~~~~~~i~d~~g~~~~~~-~~---~--~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
...+..+.++||+|...... .. . .....+|.+++|+|++......... ..+.+ .-.+..+|.||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~----~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKE----ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHH----SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHh----hCCCeEEEEECCCC
Confidence 01236678999999543221 11 1 1123689999999998765432222 22211 12355678899997
Q ss_pred CC
Q psy11510 136 EG 137 (171)
Q Consensus 136 ~~ 137 (171)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.34 E-value=6e-07 Score=68.49 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=58.7
Q ss_pred EEecCCcc-chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 70 IWDVGGQK-SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 70 i~d~~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
+-..||+. .........+..+|+++.|+|+.++.+.... .+.+++ .++|.++|+||+|+.+....+...++.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34457754 3444555668899999999999998776421 122332 478999999999997631222223333
Q ss_pred --------HhhhccCCCHHHHHHHHHHH
Q psy11510 149 --------EKATKVKLNKQSKFQVLLNE 168 (171)
Q Consensus 149 --------~~sa~~~~~v~~~f~~l~~~ 168 (171)
..||+++.|++++++.+.+.
T Consensus 76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HTTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HhcCCcEEEEECCCcccHHHHHHHHHHH
Confidence 24899999999999877554
No 222
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.25 E-value=1.4e-06 Score=70.81 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=54.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc--chhHHH--------HH
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK--SLRSYW--------RN 85 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~--~~~~~~--------~~ 85 (171)
....+|+++|.+|+||||+.+++.. ..+..+...+||..|.+ +.+..+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999875 01111334678988873 334443 55
Q ss_pred hhhCCCEEEEEEeCCChhhHHHHHHHHHHH
Q psy11510 86 YFESTDGLIWVVDSADKRRLEDCARELHEL 115 (171)
Q Consensus 86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i 115 (171)
++..+++.++|+|.++. +.+.-..|+..+
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 66678899999999887 444444554433
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.23 E-value=7.3e-06 Score=66.02 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=58.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------c
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------I 61 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~ 61 (171)
+...|+++|++||||||++..+.. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 467899999999999999999874 0
Q ss_pred ccCceEEEEEecCCccc--hh-HHH---HHh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510 62 MTFRFKLNIWDVGGQKS--LR-SYW---RNY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ 133 (171)
Q Consensus 62 ~~~~~~~~i~d~~g~~~--~~-~~~---~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 133 (171)
......+.+.||+|... .. ... ... .-.++.+++|+|+............+.+. -.+..+|.||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 11245677999999533 11 111 111 22579999999998765433332223322 13455667777
Q ss_pred CCC
Q psy11510 134 DIE 136 (171)
Q Consensus 134 Dl~ 136 (171)
|..
T Consensus 249 D~~ 251 (433)
T 3kl4_A 249 DGT 251 (433)
T ss_dssp GGC
T ss_pred ccc
Confidence 754
No 224
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.19 E-value=2.5e-05 Score=62.60 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=54.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc----------cccCc-------------eEEEEEecCCccc----hhHHHH-Hhhh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM----------IMTFR-------------FKLNIWDVGGQKS----LRSYWR-NYFE 88 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~----------~~~~~-------------~~~~i~d~~g~~~----~~~~~~-~~~~ 88 (171)
....++++|+.|||||||++.+.+ ..+.. -.+.+||++|-.. ...... .-+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 344899999999999999999998 11111 1468899998432 111111 1233
Q ss_pred CCCEEEEEEeCC--ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 89 STDGLIWVVDSA--DKRRLEDCARELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 89 ~~~~ii~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
+.+.++. ++.. ...... + ...+.. .+.|+++|.||.|+
T Consensus 148 ~~~~~~~-lS~G~~~kqrv~-l---a~aL~~----~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDID-I---AKAISM----MKKEFYFVRTKVDS 187 (413)
T ss_dssp GCSEEEE-EESSCCCHHHHH-H---HHHHHH----TTCEEEEEECCHHH
T ss_pred ccCCeEE-eCCCCccHHHHH-H---HHHHHh----cCCCeEEEEecCcc
Confidence 4565555 7765 332221 1 222222 36899999999886
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.09 E-value=1.8e-05 Score=63.81 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=61.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-----------c-----------------------------cc------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-----------I-----------------------------MT------------ 63 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-----------~-----------------------------~~------------ 63 (171)
.+...|+++|.+|+||||++..+.. + ..
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence 3456899999999999999999876 0 10
Q ss_pred --CceEEEEEecCCccchhH-HHH---Hh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCC-e-EEEEEeCC
Q psy11510 64 --FRFKLNIWDVGGQKSLRS-YWR---NY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA-T-LLVFANKQ 133 (171)
Q Consensus 64 --~~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-~ivv~nK~ 133 (171)
....+.++||+|...... +.. .. ...+|.+++|+|+...... ......+ . ... | ..+|.||.
T Consensus 177 ~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~-~----~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAF-K----EAVGEIGSIIVTKL 248 (432)
T ss_dssp TTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHH-H----TTSCSCEEEEEECS
T ss_pred HhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHH-h----hcccCCeEEEEeCC
Confidence 124578999999654321 111 11 1268999999998765422 1212222 1 234 5 88899999
Q ss_pred CCCC
Q psy11510 134 DIEG 137 (171)
Q Consensus 134 Dl~~ 137 (171)
|...
T Consensus 249 D~~~ 252 (432)
T 2v3c_C 249 DGSA 252 (432)
T ss_dssp SSCS
T ss_pred CCcc
Confidence 9854
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.07 E-value=1.6e-06 Score=65.37 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-----------c------ccCceEEEEEecCCccc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-----------I------MTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-----------~------~~~~~~~~i~d~~g~~~ 78 (171)
++++++|.+|+|||||++++.+ . ...+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCccc
Confidence 7999999999999999999997 0 01123568999999654
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.05 E-value=3.3e-06 Score=64.38 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=32.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-----------c--ccC----ceEEEEEecCCcc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-----------I--MTF----RFKLNIWDVGGQK 77 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-----------~--~~~----~~~~~i~d~~g~~ 77 (171)
...++++++|.+|||||||++++.+ . ... +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCcC
Confidence 4568999999999999999999987 0 001 1247899999953
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.97 E-value=3.1e-05 Score=59.37 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=60.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc---------------------------------c----------------------c
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM---------------------------------I----------------------M 62 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~---------------------------------~----------------------~ 62 (171)
...++++|.+|+||||++..+.. + .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 56788899999999999999885 0 0
Q ss_pred cCceEEEEEecCCccc--hhH-HHH-----HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q psy11510 63 TFRFKLNIWDVGGQKS--LRS-YWR-----NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQ 133 (171)
Q Consensus 63 ~~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~ 133 (171)
.....+.+.||||... ... +.. .....+|.+++|+|+...... ......+.. ..| ..+|.||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh-----hCCCCEEEEeCC
Confidence 0345688999999765 321 211 124579999999998754322 222222211 345 67889999
Q ss_pred CCCC
Q psy11510 134 DIEG 137 (171)
Q Consensus 134 Dl~~ 137 (171)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9754
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.95 E-value=1.2e-05 Score=67.49 Aligned_cols=21 Identities=10% Similarity=0.358 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.++++|+.|||||||++.+.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 399999999999999999988
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.73 E-value=0.00013 Score=56.63 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.--++++|+.||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999987
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.69 E-value=0.00013 Score=59.74 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=22.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+.--++++|+.||||||+++.+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHH
Confidence 34566799999999999999999987
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.67 E-value=1.1e-05 Score=60.80 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCcc-chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----
Q psy11510 74 GGQK-SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---- 148 (171)
Q Consensus 74 ~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---- 148 (171)
||+. +........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+...++.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g 75 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQG 75 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHcC
Confidence 5543 22334555678999999999999887654211 11 1 1 78999999999997632122222222
Q ss_pred ---HhhhccCCCHHHHHHHHH
Q psy11510 149 ---EKATKVKLNKQSKFQVLL 166 (171)
Q Consensus 149 ---~~sa~~~~~v~~~f~~l~ 166 (171)
..||+++.|++++++.+.
T Consensus 76 ~~v~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 76 KRVITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp CCEEECCTTSCHHHHHHHHCC
T ss_pred CeEEEECCCCcCHHHHHHHHH
Confidence 357889999998887653
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.67 E-value=0.00037 Score=56.18 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=59.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------c-----------------
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------I----------------- 61 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~----------------- 61 (171)
.+...|+++|.+|+||||+...+.. +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 4567788999999999999998872 0
Q ss_pred --ccCceEEEEEecCCccchhH-HHH-----HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeC
Q psy11510 62 --MTFRFKLNIWDVGGQKSLRS-YWR-----NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANK 132 (171)
Q Consensus 62 --~~~~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK 132 (171)
...+..+.++||||...... ... .....++.+++|+|+......- .....+ . +..+ .-+|.||
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f-~----~~l~i~gvVlnK 249 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAF-N----EALPLTGVVLTK 249 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHH-H----HHSCCCCEEEEC
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHH-h----ccCCCeEEEEec
Confidence 01345688999999644321 111 1234789999999987653322 112222 1 1233 3467899
Q ss_pred CCCCC
Q psy11510 133 QDIEG 137 (171)
Q Consensus 133 ~Dl~~ 137 (171)
.|...
T Consensus 250 ~D~~~ 254 (433)
T 2xxa_A 250 VDGDA 254 (433)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 99754
No 234
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.64 E-value=5.8e-05 Score=63.04 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc-----------------c--------ccCceEEEEEecCCccc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------I--------MTFRFKLNIWDVGGQKS 78 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~--------~~~~~~~~i~d~~g~~~ 78 (171)
..+..+|+++|.+|+|||||++++.+ + ...+..+.++||||-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 46789999999999999999999987 1 12345688999999643
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.61 E-value=0.00032 Score=53.91 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|+.||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 455789999999999999999986
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.55 E-value=0.00066 Score=48.36 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=45.1
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEG 137 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~ 137 (171)
.+.+.++|+|+.. .......+..+|.+++++..+... ..+...+..+.+.. ..++.++.+|.|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 4667889999865 334455567799999999876554 44444444442211 134678899999998643
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.50 E-value=0.00063 Score=52.31 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=21.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.--|+++|+.|+||||++..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3445789999999999999999887
No 238
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.48 E-value=0.0018 Score=49.27 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=39.8
Q ss_pred eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCC
Q psy11510 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDI 135 (171)
Q Consensus 66 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl 135 (171)
+.+.++|+++...... ....+..+|.+++|+.. +..++..+...+..+.+.....+.+++ +|.|+.+.
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 3456667665332211 12345678999998874 445566665555555332223466655 88999984
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.44 E-value=0.00079 Score=54.10 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.|+++|+.|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445688889999999999999887
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.43 E-value=0.00037 Score=47.87 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|++|+|||||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999999998
No 241
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.41 E-value=0.00064 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.-++++|.+|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4588999999999999999987
No 242
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.30 E-value=0.0033 Score=48.79 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=22.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
...-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3455899999999999999999987
No 243
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.30 E-value=0.00013 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.+++++|+.|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00014 Score=51.26 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
--++++|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 245
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.23 E-value=0.0012 Score=46.95 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999987
No 246
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.19 E-value=0.00019 Score=55.33 Aligned_cols=75 Identities=9% Similarity=-0.052 Sum_probs=49.0
Q ss_pred HhhhCCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH--------Hhh
Q psy11510 85 NYFESTDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS--------EKA 151 (171)
Q Consensus 85 ~~~~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~--------~~s 151 (171)
....++|.+++|+|+.++.. ...+.+++.... ..++|.++|.||+|+.+... .++..+.+ ..|
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~s 157 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS 157 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEe
Confidence 35789999999999987553 444444443331 25789999999999976422 12333333 236
Q ss_pred hccCCCHHHHHH
Q psy11510 152 TKVKLNKQSKFQ 163 (171)
Q Consensus 152 a~~~~~v~~~f~ 163 (171)
|.++.|++++++
T Consensus 158 a~~~~g~~~L~~ 169 (307)
T 1t9h_A 158 SKDQDSLADIIP 169 (307)
T ss_dssp HHHHTTCTTTGG
T ss_pred cCCCCCHHHHHh
Confidence 777778776654
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.17 E-value=0.00018 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.16 E-value=0.0003 Score=49.68 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~ 61 (171)
.+.-.++++|++||||||+++.+...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34456999999999999999999873
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.06 E-value=0.00027 Score=50.07 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
++++|+.||||||+++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999987
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.06 E-value=0.0026 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|+.|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445678889999999999999887
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.06 E-value=0.00031 Score=50.16 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
|+++|++|||||||++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999976
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.05 E-value=0.00029 Score=50.23 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
--++++|+.||||||+++.+.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999987
No 253
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.02 E-value=0.00074 Score=48.98 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=27.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG 74 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~ 74 (171)
..-.+++.|++|+|||++++.+.. .......+..++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 456899999999999999999987 32223444444443
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.02 E-value=0.00039 Score=50.11 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+...|.++|++|||||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35677899999999999999999988
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.00 E-value=0.00034 Score=51.17 Aligned_cols=24 Identities=4% Similarity=0.063 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--++++|++|||||||++.+.+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999988
No 256
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.00 E-value=0.0011 Score=45.04 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....|++.|++|+|||++.+.+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999987
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.0006 Score=48.08 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=23.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+...|+++|.+||||||+.+.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 45667899999999999999999987
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.98 E-value=0.00036 Score=50.84 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~~ 61 (171)
+.-.++++|++|||||||++.+.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456899999999999999999883
No 259
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.97 E-value=0.00037 Score=50.17 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--++++|+.|||||||++.+.+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344688999999999999999988
No 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.96 E-value=0.0048 Score=47.65 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.--|+++|+.|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456788999999999999999887
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.00037 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.4
Q ss_pred eeEEEEEeCCCCcHHHHHHHHh
Q psy11510 38 VAVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~ 59 (171)
.--++++|++|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3457899999999999999544
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.94 E-value=0.00043 Score=49.97 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.--|+++|++||||||+++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 44689999999999999999987
No 263
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.92 E-value=0.00061 Score=49.11 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--|+++|++|||||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 445689999999999999999986
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.90 E-value=0.00052 Score=49.26 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+..-|+++|++||||||+.+.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999976
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.90 E-value=0.00062 Score=48.88 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~ 61 (171)
.+...|.++|+.||||||+++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999883
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00061 Score=46.93 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCcHHHHHHHH
Q psy11510 39 AVVSLLRNKNGGETLILKKK 58 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~ 58 (171)
.-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.87 E-value=0.00064 Score=48.47 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|++||||||+++.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 268
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.87 E-value=0.0019 Score=43.63 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=45.9
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhCC-CEEEEEEeCCChhhHHHHHHHHHHHH
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFEST-DGLIWVVDSADKRRLEDCARELHELL 116 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~ii~v~d~~~~~s~~~~~~~~~~i~ 116 (171)
...|++.|++|+|||++.+.+..... .+...+... .........+..+ .+++++=++..-. .+ .+..+..++
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~--~~~~~~~~~~~~a~~~~l~lDei~~l~-~~-~q~~Ll~~l 99 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVE--YLIDMPMELLQKAEGGVLYVGDIAQYS-RN-IQTGITFII 99 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTT--HHHHCHHHHHHHTTTSEEEEEECTTCC-HH-HHHHHHHHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhh--CChHhhhhHHHhCCCCeEEEeChHHCC-HH-HHHHHHHHH
Confidence 45699999999999999999987332 333333332 1111223334333 3455544444321 11 222233444
Q ss_pred hccccCCCeEEEEEeC
Q psy11510 117 QEERLAGATLLVFANK 132 (171)
Q Consensus 117 ~~~~~~~~p~ivv~nK 132 (171)
+.....+..+|...|.
T Consensus 100 ~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 100 GKAERCRVRVIASCSY 115 (143)
T ss_dssp HHHTTTTCEEEEEEEE
T ss_pred HhCCCCCEEEEEecCC
Confidence 4332345666666665
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.86 E-value=0.00061 Score=47.04 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.|++.|++||||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 270
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.86 E-value=0.00032 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=16.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHh-c
Q psy11510 38 VAVVSLLRNKNGGETLILKKKK-M 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~-~ 60 (171)
.--++++|+.||||||+++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999 5
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.84 E-value=0.00059 Score=47.39 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|+.|+|||||++.+.+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 444689999999999999999998
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00083 Score=47.31 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.83 E-value=0.00063 Score=47.16 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.83 E-value=0.00062 Score=50.31 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 444689999999999999999998
No 275
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.82 E-value=0.0053 Score=45.83 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
......+++.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34567899999999999999999987
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.82 E-value=0.0008 Score=46.78 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 277
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.81 E-value=0.00071 Score=48.75 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
++|++.|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.80 E-value=0.00066 Score=47.94 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.0007 Score=47.15 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.-|++.|.+||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 280
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.78 E-value=0.00083 Score=48.67 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=21.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|.+||||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.78 E-value=0.00077 Score=48.61 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
++|+++|++||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.77 E-value=0.00081 Score=47.73 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 283
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00083 Score=47.15 Aligned_cols=23 Identities=17% Similarity=-0.060 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 284
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.77 E-value=0.00079 Score=49.34 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.=.+.++|+.|||||||++-+.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999998
No 285
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00087 Score=48.83 Aligned_cols=24 Identities=4% Similarity=0.129 Sum_probs=20.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|.+||||||+.+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999875
No 286
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.76 E-value=0.00097 Score=46.76 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|.+||||||+.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.76 E-value=0.00088 Score=49.47 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~ 59 (171)
+...|+++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999999
No 288
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.76 E-value=0.0012 Score=47.25 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=21.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|++.|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.75 E-value=0.00087 Score=47.90 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=21.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.-.|+++|++||||||+++.+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999976
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00098 Score=46.80 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=24.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWD 72 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d 72 (171)
.|++.|.+||||||+.+.+.. ....++.+...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 589999999999999999987 333333344444
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.74 E-value=0.0011 Score=46.10 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|++||||||+.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.0011 Score=47.33 Aligned_cols=26 Identities=19% Similarity=0.023 Sum_probs=23.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....+.|+++|.+||||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999876
No 293
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.72 E-value=0.0032 Score=48.26 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-.+++.|++|+|||++++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345699999999999999999988
No 294
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.72 E-value=0.00099 Score=47.56 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999975
No 295
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.71 E-value=0.0045 Score=43.82 Aligned_cols=21 Identities=14% Similarity=-0.008 Sum_probs=17.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-+++.|+.|+||||++.++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999865554
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.69 E-value=0.00092 Score=47.72 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|+++|.+||||||+.+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 297
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.0064 Score=47.31 Aligned_cols=23 Identities=17% Similarity=-0.013 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.-.+++.|++|+|||++++.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999987
No 298
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.68 E-value=0.0034 Score=49.28 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=45.7
Q ss_pred hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-----------Hhhhcc
Q psy11510 87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-----------EKATKV 154 (171)
Q Consensus 87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----------~~sa~~ 154 (171)
..++|.+++|... .|. +...+.+++.... ..++|.++|.||+|+.+....+.+..+. ..|+.+
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5789999987654 443 3444444443332 1478889999999997632211122222 337888
Q ss_pred CCCHHHHHHHH
Q psy11510 155 KLNKQSKFQVL 165 (171)
Q Consensus 155 ~~~v~~~f~~l 165 (171)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99988876543
No 299
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.68 E-value=0.0072 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.+++.|++|+||||+++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988
No 300
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.67 E-value=0.0011 Score=47.33 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.+|+++|..||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.67 E-value=0.0012 Score=47.04 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.00083 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
++.++|+.|+||||+++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999999887
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.67 E-value=0.00089 Score=50.27 Aligned_cols=25 Identities=4% Similarity=0.114 Sum_probs=22.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.-.++++|+.||||||+++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3445799999999999999999998
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.67 E-value=0.0011 Score=47.99 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
..|.++|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 305
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.018 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.8
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.--|++.|++|+|||++++.+.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4567899999999999999999998
No 306
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.67 E-value=0.00098 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
=.++++|+.|||||||++-+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999998
No 307
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.66 E-value=0.0012 Score=48.77 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=22.5
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+..+|++.|++||||||+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999975
No 308
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=49.07 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999998
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.66 E-value=0.0013 Score=46.91 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=22.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.-.|+++|++||||||+.+.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999987
No 310
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.65 E-value=0.0012 Score=46.86 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0012 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 312
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.65 E-value=0.046 Score=39.67 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=40.9
Q ss_pred hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510 86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS 148 (171)
Q Consensus 86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 148 (171)
.+..+|.+++++..+ ..++..+...+..+ +....+...+.+|.|+.+.......+++.+.+
T Consensus 137 ~l~~ad~viiv~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~ 197 (245)
T 3ea0_A 137 VLEHLDELCIVTTPS-LQSLRRAGQLLKLC-KEFEKPISRIEIILNRADTNSRITSDEIEKVI 197 (245)
T ss_dssp HGGGCSEEEEEECSS-HHHHHHHHHHHHHH-HTCSSCCSCEEEEEESTTSCTTSCHHHHHHHH
T ss_pred HHHHCCEEEEEecCc-HHHHHHHHHHHHHH-HHhCCCccceEEEEecCCCCCCCCHHHHHHHh
Confidence 355689999988854 55666666666555 33323345688899999976666666666655
No 313
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.65 E-value=0.001 Score=49.98 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 444688999999999999999998
No 314
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.64 E-value=0.0012 Score=47.69 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 315
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.64 E-value=0.0011 Score=46.45 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.64 E-value=0.0014 Score=46.20 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 317
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.64 E-value=0.0014 Score=49.75 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+..-|++.|++||||||+.+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999999975
No 318
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.64 E-value=0.001 Score=50.37 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 344689999999999999999998
No 319
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.63 E-value=0.0011 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
=.++++|+.|+|||||++-+.+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999998
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.63 E-value=0.0052 Score=47.64 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.-.++++|+.|+|||||++.+.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999998
No 321
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.021 Score=43.85 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...+++.|++|+|||++++.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 3456899999999999999999987
No 322
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.62 E-value=0.0012 Score=49.19 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999998
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.62 E-value=0.0014 Score=46.20 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.62 E-value=0.0019 Score=46.29 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+...|+++|++||||||+.+.+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999987
No 325
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.61 E-value=0.0011 Score=48.56 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|+.|||||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445688999999999999999883
No 326
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.61 E-value=0.0012 Score=48.90 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999999998
No 327
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.61 E-value=0.0011 Score=49.89 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.+.++|+.|||||||++-+.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 445688999999999999999998
No 328
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.014 Score=46.92 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+++-.|++.|++|+|||++++.+.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4567899999999999999999998
No 329
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.00092 Score=46.83 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|++|+|||||++.+.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999988
No 330
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.59 E-value=0.0034 Score=46.05 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=28.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG 75 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g 75 (171)
.+..-|++.|++||||||+++.+.. ... ...+.....|+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~ 63 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG 63 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC
Confidence 3567899999999999999999988 332 33443444444
No 331
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.59 E-value=0.0013 Score=48.33 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999999998
No 332
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.012 Score=44.51 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.1
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.-.+++.|++|+|||++++.+..
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHH
Confidence 3445799999999999999999998
No 333
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.59 E-value=0.0011 Score=49.51 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444688999999999999999998
No 334
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.58 E-value=0.013 Score=42.04 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=51.3
Q ss_pred EEEEEeCCCCcHH-HHHHHHhccccCceEEEEEecCCccc--------------------hhHHHHHhhhCCCEEEEEEe
Q psy11510 40 VVSLLRNKNGGET-LILKKKKMIMTFRFKLNIWDVGGQKS--------------------LRSYWRNYFESTDGLIWVVD 98 (171)
Q Consensus 40 ki~liG~~~~GKt-tli~~~~~~~~~~~~~~i~d~~g~~~--------------------~~~~~~~~~~~~~~ii~v~d 98 (171)
=.++.|+.|+||| .|++++.+....+.++.++...-..+ ...++. .++++|++++
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~-~~~~~DvIlI--- 97 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQ-EALGVAVIGI--- 97 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHH-HHHTCSEEEE---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHH-hccCCCEEEE---
Confidence 4567999999999 77777776322223333332110000 111122 2456776665
Q ss_pred CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
++.+-|++..+.+..+. ..++||++.|-+.|=..
T Consensus 98 -DEaQFfk~~ve~~~~L~----~~gk~VI~~GL~~DF~~ 131 (195)
T 1w4r_A 98 -DEGQFFPDIVEFCEAMA----NAGKTVIVAALDGTFQR 131 (195)
T ss_dssp -SSGGGCTTHHHHHHHHH----HTTCEEEEEEESBCTTS
T ss_pred -EchhhhHHHHHHHHHHH----HCCCeEEEEeccccccc
Confidence 45555544545555553 25899999999998644
No 335
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.58 E-value=0.0012 Score=47.80 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--++++|++|+|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999986
No 336
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.58 E-value=0.0015 Score=46.71 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|++.|.+||||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 337
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.57 E-value=0.0012 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 344688999999999999999998
No 338
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.57 E-value=0.0012 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 334689999999999999999998
No 339
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.56 E-value=0.0035 Score=44.14 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=24.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510 40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG 75 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g 75 (171)
-|++.|.+||||||+.+.+.. ....++.+...+-|+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 38 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCC
Confidence 489999999999999999987 322233333334444
No 340
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.55 E-value=0.0014 Score=47.40 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
+.|+++|++||||+|..+++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999887
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.55 E-value=0.002 Score=45.84 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+...|++.|.+||||||+.+.+..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999999875
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.55 E-value=0.0013 Score=47.63 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.55 E-value=0.0015 Score=45.05 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
++|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999876
No 344
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.54 E-value=0.0015 Score=47.28 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.+.|+++|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 345
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.53 E-value=0.0014 Score=49.09 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999998
No 346
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.53 E-value=0.0013 Score=48.97 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.=.++++|+.|+|||||++-+.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34689999999999999999998
No 347
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.53 E-value=0.0013 Score=48.94 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~~ 61 (171)
+.=.++++|+.|+|||||++-+.+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999984
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.53 E-value=0.0019 Score=45.84 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=22.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~ 61 (171)
.+...|+++|..||||||+.+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35578999999999999999999864
No 349
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.53 E-value=0.011 Score=43.41 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=21.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999987
No 350
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.52 E-value=0.00077 Score=47.42 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.+.++|++|||||||++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.52 E-value=0.0035 Score=43.94 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 352
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.52 E-value=0.0014 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 334689999999999999999998
No 353
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.51 E-value=0.0014 Score=49.33 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=21.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~~ 61 (171)
+.=.++++|+.|||||||++-+.+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999984
No 354
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.51 E-value=0.0049 Score=56.10 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.=+++++|+.|||||||++-+.+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcc
Confidence 3455899999999999999999998
No 355
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.021 Score=45.89 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.--|++.|++|+|||++++.+.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999998
No 356
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0017 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
+.|.++|+.||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 357
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.51 E-value=0.0015 Score=51.32 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.++++|++|||||||++.+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999999998
No 358
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.50 E-value=0.0014 Score=50.42 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=23.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhccc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMIM 62 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~~ 62 (171)
++.=.++++|++|+|||||++.+.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455679999999999999999999843
No 359
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.50 E-value=0.011 Score=44.25 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....+++.|++|+|||++++.+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 455699999999999999999987
No 360
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.50 E-value=0.0016 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 344689999999999999999998
No 361
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.50 E-value=0.0015 Score=49.21 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999998
No 362
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.019 Score=45.76 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.-.|++.|++|+|||++++.+.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3456799999999999999999998
No 363
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.49 E-value=0.0013 Score=51.54 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.-+++++|+.|+|||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999988
No 364
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.48 E-value=0.0012 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.+.++|+.|+|||||++-+.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999987
No 365
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.48 E-value=0.0014 Score=48.68 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 34 QVSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 34 ~~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
...+...|+++|++||||||+.+.+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999876
No 366
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.48 E-value=0.0014 Score=45.61 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999876
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.47 E-value=0.0012 Score=46.15 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=16.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 368
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.47 E-value=0.0016 Score=45.53 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|.+|+||||+.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 369
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.47 E-value=0.0015 Score=48.75 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.=.++++|+.|+|||||++-+.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34688999999999999999998
No 370
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.46 E-value=0.0021 Score=47.13 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=22.9
Q ss_pred ecccccccCCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 24 YGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 24 ~~m~~~~~~~~~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+-||+++.--...+..-|++.|.+||||||+++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 7 HHMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ------------CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677766433355677899999999999999999987
No 371
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0059 Score=46.95 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
+++.|++|+||||+++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987
No 372
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.45 E-value=0.002 Score=49.64 Aligned_cols=26 Identities=4% Similarity=0.000 Sum_probs=23.5
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+..-|.++|+.|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677899999999999999999998
No 373
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.44 E-value=0.0016 Score=48.98 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 344688999999999999999998
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.44 E-value=0.0019 Score=47.64 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...|.++|+.||||||+++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999987
No 375
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.44 E-value=0.002 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 376
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.42 E-value=0.017 Score=42.06 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=47.7
Q ss_pred eEEEEEeCCCCcHHH-HHHHHhccccCceEEEEE----ecC----------Ccc-------chhHHHHHhhhCCCEEEEE
Q psy11510 39 AVVSLLRNKNGGETL-ILKKKKMIMTFRFKLNIW----DVG----------GQK-------SLRSYWRNYFESTDGLIWV 96 (171)
Q Consensus 39 ~ki~liG~~~~GKtt-li~~~~~~~~~~~~~~i~----d~~----------g~~-------~~~~~~~~~~~~~~~ii~v 96 (171)
.=.++.|+.++|||| |++++.+....+.++.++ |+. |.. ....+......+.|+|++
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~I- 107 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGI- 107 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEE-
Confidence 344679999999999 777766622111222222 211 100 001111111234554443
Q ss_pred EeCCChhhHH-HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 97 VDSADKRRLE-DCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 97 ~d~~~~~s~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
| ..+-|. ++.+.+..+.. .++||++.|-..|=..
T Consensus 108 -D--EaQFf~~~~v~~l~~la~----~gi~Vi~~GLd~DF~~ 142 (219)
T 3e2i_A 108 -D--EVQFFDDEIVSIVEKLSA----DGHRVIVAGLDMDFRG 142 (219)
T ss_dssp -C--CGGGSCTHHHHHHHHHHH----TTCEEEEEEESBCTTS
T ss_pred -e--chhcCCHHHHHHHHHHHH----CCCEEEEeeccccccc
Confidence 3 444444 35555666642 5899999999998755
No 377
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.42 E-value=0.0024 Score=45.66 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=22.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...|.++|+.||||||+++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999987
No 378
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.025 Score=45.47 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.--|++.|++|+|||++++.+.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHH
Confidence 4567899999999999999999998
No 379
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.41 E-value=0.0027 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.4
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|++.|.+||||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 380
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.41 E-value=0.0019 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~~ 61 (171)
.=.++++|+.|+|||||++-+.+.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999984
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.41 E-value=0.0019 Score=46.96 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
+.|++.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 382
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.39 E-value=0.01 Score=45.50 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...+++.|++|+|||++++.+..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999987
No 383
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.38 E-value=0.0023 Score=48.76 Aligned_cols=26 Identities=4% Similarity=-0.056 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+...|.++|++|||||||++.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999999887
No 384
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.38 E-value=0.0017 Score=49.64 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.-.++++|++|||||||++.+.+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 34689999999999999999998
No 385
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.38 E-value=0.002 Score=45.54 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 386
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.015 Score=44.78 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
++++.|++|+||||+++.+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999988
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.36 E-value=0.0024 Score=46.74 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|.+||||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.36 E-value=0.00088 Score=48.03 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 389
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.35 E-value=0.002 Score=50.62 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|+.|||||||++-+.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 334578999999999999999998
No 390
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.02 Score=46.35 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=22.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.--|++.|++|+|||+|++.+.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4667899999999999999999998
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.34 E-value=0.0024 Score=47.49 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHh
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~ 59 (171)
+...|.++|+.||||||+.+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.33 E-value=0.0025 Score=49.29 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=23.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+.+-|.++|++||||||+++.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999999987
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.32 E-value=0.0027 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999976
No 394
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.32 E-value=0.002 Score=49.31 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=20.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHh
Q psy11510 38 VAVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~ 59 (171)
.-.++++|++|||||||++.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 395
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.32 E-value=0.0024 Score=48.71 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 334689999999999999999998
No 396
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.31 E-value=0.00087 Score=51.57 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=21.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|++|||||||++.+.+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 445899999999999999999998
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.31 E-value=0.0027 Score=45.75 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 398
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.31 E-value=0.0015 Score=50.17 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.=.++++|+.|||||||++-+.+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 3455799999999999999999988
No 399
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.31 E-value=0.0019 Score=50.68 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.++++|+.||||||+++.+.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3899999999999999999987
No 400
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.30 E-value=0.037 Score=39.40 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=18.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
.=.++.|+.|+||||.+-++..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~ 30 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIR 30 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 4578899999999988777765
No 401
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.28 E-value=0.015 Score=42.27 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=37.7
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI 135 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl 135 (171)
.+.+.++|+|+.... .....+..+|.++++++.+ ..++..+..... ++... .-..+.+|.|+.+-
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~-~~~~~--~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEK-LAGDL--GIKKVRYVINKVRN 195 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHH-HHHHH--TCSCEEEEEEEECC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHH-HHHHc--CCccEEEEEeCCCC
Confidence 345566666653322 2233456789999999864 445555544433 33332 12457788999883
No 402
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.27 E-value=0.003 Score=48.37 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=29.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhcc-c--cCceEEEEEecCCc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKMI-M--TFRFKLNIWDVGGQ 76 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~~-~--~~~~~~~i~d~~g~ 76 (171)
.+...|.++|+.|||||||++.+.+. . ...-.+.+++..|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 45678999999999999999999883 2 22334556665553
No 403
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.27 E-value=0.01 Score=47.78 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999988
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.27 E-value=0.0028 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 405
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.27 E-value=0.0022 Score=47.40 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988
No 406
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.26 E-value=0.058 Score=39.89 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=39.0
Q ss_pred eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQD 134 (171)
Q Consensus 66 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 134 (171)
+.+.++|+|+.. .......+..+|.+++++..+. .+...+...+..+ +.. ..+.++.+|.|+.+
T Consensus 145 yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l-~~~-~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFV-RKL-NLFLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHH-HTT-TCCCCEEEEEEEEC
T ss_pred CCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHH-HHH-hccCCEEEEEeccc
Confidence 345667776643 2233444567999999998644 4555555544444 222 23567889999984
No 407
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.25 E-value=0.01 Score=46.35 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.0
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.--+++.|++|+|||||+.++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999885
No 408
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.24 E-value=0.0026 Score=46.51 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=23.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMI 61 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~ 61 (171)
..+..-|++.|+.||||||+++.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 455678999999999999999999886
No 409
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.23 E-value=0.0022 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999988
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.23 E-value=0.0097 Score=43.19 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=27.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG 75 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g 75 (171)
+..-|++-|.+||||||+++.+.. .....+.+....-||
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 456799999999999999999987 333334444444444
No 411
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.22 E-value=0.0031 Score=44.24 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWD 72 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d 72 (171)
..+.++|.+|+||||++.++.. ......++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4688999999999999999987 333333444443
No 412
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.22 E-value=0.0024 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.=-++++|+.|||||||++-+.+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34578999999999999999998
No 413
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.22 E-value=0.12 Score=37.03 Aligned_cols=91 Identities=8% Similarity=0.025 Sum_probs=57.7
Q ss_pred EEEE-eCCCCcHHHHHHHHhc-cc--------------------------------------cCceEEEEEecCCc-cch
Q psy11510 41 VSLL-RNKNGGETLILKKKKM-IM--------------------------------------TFRFKLNIWDVGGQ-KSL 79 (171)
Q Consensus 41 i~li-G~~~~GKttli~~~~~-~~--------------------------------------~~~~~~~i~d~~g~-~~~ 79 (171)
|++. +.+|+||||+.-.+.. .. ...+.+.+.|+|+. ...
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~~ 82 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPEDE 82 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSSS
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCcH
Confidence 4454 6678999999888775 00 02345667777775 322
Q ss_pred hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG 137 (171)
Q Consensus 80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~ 137 (171)
.....+..+|.+++++..+ ..++..+...+..+.+. .+.++.+|.|+.|...
T Consensus 83 --~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 83 --DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp --HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred --HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 2344567799999988854 44556555555554321 1567889999998754
No 414
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.22 E-value=0.0025 Score=47.45 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-|+++|++||||||+.+.+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
No 415
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.21 E-value=0.0026 Score=43.89 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 416
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.21 E-value=0.0069 Score=48.93 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.7
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHh
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKK 59 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~ 59 (171)
..+..-|.|+|+.++|||||++++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~ll 88 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHh
Confidence 4578889999999999999999996
No 417
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.21 E-value=0.0026 Score=49.95 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|+.|+|||||++.+.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999998
No 418
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.20 E-value=0.0026 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|+.|||||||++-+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 334578999999999999999998
No 419
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.19 E-value=0.0026 Score=50.35 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|+.|||||||++-+.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 334578999999999999999999
No 420
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0026 Score=50.01 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|+.|||||||++-+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 334678999999999999999998
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0025 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.--++++|+.||||||+++.+.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456789999999999999999998
No 422
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.18 E-value=0.0032 Score=46.63 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=21.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+.+.|.+.|.+||||||+.+.+..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999876
No 423
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.18 E-value=0.0038 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.+.+.|++.|.+||||||+.+.+..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999974
No 424
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.16 E-value=0.0027 Score=50.07 Aligned_cols=24 Identities=4% Similarity=0.122 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.++++|+.||||||+++.+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999998
No 425
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.15 E-value=0.0028 Score=49.87 Aligned_cols=24 Identities=4% Similarity=0.256 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-+.++|+.|||||||++-+.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 344678999999999999999998
No 426
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.15 E-value=0.0024 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999987
No 427
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.14 E-value=0.0028 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.=-++++|+.|||||||++-+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 34578999999999999999998
No 428
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.14 E-value=0.0029 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|+.|||||||++-+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 344678999999999999999998
No 429
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.12 E-value=0.0031 Score=45.47 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999986
No 430
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.10 E-value=0.007 Score=46.88 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-+++.|++|+|||+|..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999976
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.09 E-value=0.0032 Score=44.03 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.|+++|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998875
No 432
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.09 E-value=0.0037 Score=43.67 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-.+++|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 433
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.08 E-value=0.0037 Score=46.15 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.+.|++.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 434
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.06 E-value=0.061 Score=39.39 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=42.7
Q ss_pred ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccc-----cCCCeEEEEEeCCCC
Q psy11510 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEER-----LAGATLLVFANKQDI 135 (171)
Q Consensus 65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~Dl 135 (171)
.+.+.++|+|+... ......+..+|.+++|++. +..++..+...+..+..... .+...+.+|.|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 45567788877432 2445556789999999885 45556666555555422110 023578889999874
No 435
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.06 E-value=0.0032 Score=47.28 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
++++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999999988
No 436
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.06 E-value=0.0063 Score=50.01 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.4
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...++++|+.||||||+++.+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344599999999999999999998
No 437
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.06 E-value=0.0039 Score=42.99 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.|++.|.+||||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 438
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.06 E-value=0.0044 Score=44.51 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=21.7
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...|+++|.+|+||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999876
No 439
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.05 E-value=0.12 Score=39.57 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=18.2
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.--|++.|-.||||||..-.+.-
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCccCHHHHHHHHHH
Confidence 34567779999999998877665
No 440
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.04 E-value=0.0024 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|+.|||||||++-+.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 334688999999999999999998
No 441
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.04 E-value=0.016 Score=45.27 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...|++.|++|+|||++++.+..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Confidence 3445799999999999999999988
No 442
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.02 E-value=0.0036 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.+.++|+.|||||||++-+.+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 444689999999999999999998
No 443
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.01 E-value=0.0044 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...++++|++|+||||+++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34599999999999999999987
No 444
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.00 E-value=0.0033 Score=50.41 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--++++|+.||||||+++.+.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 334689999999999999999988
No 445
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.96 E-value=0.0035 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999998
No 446
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.0097 Score=45.12 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.+++.|++|+|||++++.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999999987
No 447
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.96 E-value=0.039 Score=42.94 Aligned_cols=25 Identities=24% Similarity=0.112 Sum_probs=22.2
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.....+++.|++|+|||++++.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999987
No 448
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.95 E-value=0.017 Score=44.09 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=45.4
Q ss_pred EEEEeCCCCcHHHHHHHHhccccCceEEEEEecCC--ccchhHHHHHhhhC----CCEEEEEEeCCChhhHHHHHHHHHH
Q psy11510 41 VSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGG--QKSLRSYWRNYFES----TDGLIWVVDSADKRRLEDCARELHE 114 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~~~~~~----~~~ii~v~d~~~~~s~~~~~~~~~~ 114 (171)
+++.|++|+|||++++.+...- +..+.-++.+. ....+.....+... ...-++++|-.+.-+-......+..
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l--~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~ 128 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV--NADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRS 128 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT--TEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHHh--CCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHH
Confidence 5556669999999999998721 12222223221 11222222222221 2455666664432220223333444
Q ss_pred HHhccccCCCeEEEEEeCCC
Q psy11510 115 LLQEERLAGATLLVFANKQD 134 (171)
Q Consensus 115 i~~~~~~~~~p~ivv~nK~D 134 (171)
+++.. ..+.++|+..|..+
T Consensus 129 ~le~~-~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 129 FMEAY-SSNCSIIITANNID 147 (324)
T ss_dssp HHHHH-GGGCEEEEEESSGG
T ss_pred HHHhC-CCCcEEEEEeCCcc
Confidence 44432 24678888887654
No 449
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.93 E-value=0.004 Score=47.09 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=-++++|++|+|||||+..+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334688999999999999999988
No 450
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.93 E-value=0.0064 Score=46.02 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
......+++.|++|+|||++++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44566899999999999999997776
No 451
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.92 E-value=0.047 Score=41.76 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=21.2
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345699999999999999999987
No 452
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.92 E-value=0.023 Score=44.66 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-+++.|++|+|||+|..++..
T Consensus 76 li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 477799999999999998876
No 453
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.92 E-value=0.028 Score=44.25 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....+++.|++|+|||++++.+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 454
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.031 Score=45.81 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.-.+++.|++|+|||++++.+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 455
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.91 E-value=0.0047 Score=43.88 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
-.+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999988
No 456
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.90 E-value=0.0042 Score=44.48 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=20.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999976
No 457
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.90 E-value=0.0042 Score=44.59 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
--+++.|++|+|||++++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 458
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.90 E-value=0.034 Score=41.11 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=26.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG 74 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~ 74 (171)
...+++.|++|+|||++++.+.. .......+...+.+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 46799999999999999999987 33233334444443
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.0073 Score=49.92 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=25.6
Q ss_pred cCCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 31 HRPQVSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 31 ~~~~~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.++..++.=-+.++|+.|+|||||++-+.+
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 355566667789999999999999999998
No 460
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.88 E-value=0.0044 Score=45.10 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--++++|++|+|||||+..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 344689999999999999999987
No 461
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.88 E-value=0.016 Score=45.05 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=19.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.==+++.|.+|+|||||+..+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 34588999999999999998865
No 462
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.056 Score=41.66 Aligned_cols=26 Identities=4% Similarity=0.003 Sum_probs=23.0
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+.-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34667889999999999999999988
No 463
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.85 E-value=0.0024 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 334678999999999999999998
No 464
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.84 E-value=0.0043 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
.-.|+++|++||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 465
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.82 E-value=0.0052 Score=55.95 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=22.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++.=+|.++|++|||||||++-+.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 3456899999999999999999998
No 466
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.82 E-value=0.01 Score=44.87 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 399999999999999999987
No 467
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.81 E-value=0.0038 Score=48.05 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-++++|..||||||+++.+.+
T Consensus 6 v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHh
Confidence 468999999999999999995
No 468
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.81 E-value=0.01 Score=45.96 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
..|+++|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999886
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.79 E-value=0.0068 Score=43.30 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=22.4
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..++.|.+.|..||||||+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999999876
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.79 E-value=0.005 Score=46.57 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 471
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0061 Score=47.85 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.3
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+.-.++++|+.||||||++..+.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3556799999999999999999988
No 472
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.78 E-value=0.03 Score=45.06 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...+++.|++|+|||++++.+..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 473
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.78 E-value=0.0057 Score=47.80 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=23.8
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhccc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKMIM 62 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~~~ 62 (171)
-.+.=++.++|+.|+|||||++.+.+..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455689999999999999999999933
No 474
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.77 E-value=0.0075 Score=43.99 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-|+++|++||||+|..+++..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366789999999999999876
No 475
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0046 Score=50.17 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|||||||++-+.+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445799999999999999999998
No 476
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.77 E-value=0.008 Score=45.63 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=22.4
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
.+...-+++.|++|+|||++++.+..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556788889999999999999988
No 477
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.76 E-value=0.037 Score=40.47 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=19.5
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+..-+++.|+.|+||||++.++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH
Confidence 345677889999999998887776
No 478
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.037 Score=40.18 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--+++.|++|+|||+|..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 344688999999999999988764
No 479
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.72 E-value=0.068 Score=42.59 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.6
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....-|+++|.+||||||+.+++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999876
No 480
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.68 E-value=0.05 Score=42.61 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=27.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQ 76 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~ 76 (171)
.--++++|++|+|||||+..+.. .....-.+.++|+...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 34578999999999999999987 2222233455676653
No 481
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.67 E-value=0.0066 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.8
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+...+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 482
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.67 E-value=0.029 Score=45.63 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q psy11510 39 AVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 39 ~ki~liG~~~~GKttli~~~~~ 60 (171)
..++++|++|+|||++++.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999988
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.65 E-value=0.02 Score=44.06 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.3
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-|+++|++|||||||...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34588999999999999999986
No 484
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.64 E-value=0.061 Score=40.76 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=21.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
....+++.|++|+|||++++.+..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999987
No 485
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.61 E-value=0.0082 Score=43.91 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=22.1
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+...|.++|..|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998875
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.59 E-value=0.011 Score=46.58 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=30.3
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG 75 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g 75 (171)
...+++++|++|+|||++++.+.. ....+..+.++|..|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 567899999999999999999987 223344566778765
No 487
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.55 E-value=0.0076 Score=45.24 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.9
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.--++++|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344688999999999999999986
No 488
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.54 E-value=0.0057 Score=45.52 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.0
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
++...|++.|..||||||+++.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999887
No 489
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.53 E-value=0.0077 Score=48.53 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
-.+.=++.++|+.|+|||||++.+.+
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44556899999999999999999998
No 490
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.53 E-value=0.0079 Score=50.08 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.=.++++|+.|+|||||++-+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445799999999999999999998
No 491
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.013 Score=44.23 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
+++.|++|+|||++++.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 99999999999999999987
No 492
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.0074 Score=46.72 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.9
Q ss_pred CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 36 SNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 36 ~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
...-.+++.|++|+||||+++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999987
No 493
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.51 E-value=0.0086 Score=40.86 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q psy11510 41 VSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 41 i~liG~~~~GKttli~~~~~ 60 (171)
.+++|+.|+||||++..+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999886
No 494
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.50 E-value=0.0084 Score=45.59 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=21.6
Q ss_pred ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 37 NVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 37 ~~~ki~liG~~~~GKttli~~~~~ 60 (171)
+.-.+++.|++|+|||++++.+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 455799999999999999999988
No 495
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.48 E-value=0.015 Score=47.82 Aligned_cols=38 Identities=5% Similarity=0.025 Sum_probs=31.5
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-----cccCceEEEEEecCC
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-----IMTFRFKLNIWDVGG 75 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-----~~~~~~~~~i~d~~g 75 (171)
.-++++.|.+|+|||++++.+.. ...+.+.+.+.|..|
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 46899999999999999999876 334578888888776
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.48 E-value=0.024 Score=41.13 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
..-|++-|.+||||||.++.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999987
No 497
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.47 E-value=0.029 Score=44.73 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q psy11510 40 VVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 40 ki~liG~~~~GKttli~~~~~ 60 (171)
-|+|.|++|||||||...+..
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 478999999999999999986
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.47 E-value=0.011 Score=43.42 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~ 60 (171)
...|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999886
No 499
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.42 E-value=0.15 Score=39.03 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=28.9
Q ss_pred eeEEEEEeCCCCcHHHHHHHHhc-cccC------ceEEEEEecCCc
Q psy11510 38 VAVVSLLRNKNGGETLILKKKKM-IMTF------RFKLNIWDVGGQ 76 (171)
Q Consensus 38 ~~ki~liG~~~~GKttli~~~~~-~~~~------~~~~~i~d~~g~ 76 (171)
.--+++.|++|+|||+|+.++.. .... .-.+.++|+.+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34689999999999999999986 1111 345667787764
No 500
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.41 E-value=0.05 Score=47.05 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=23.3
Q ss_pred CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510 35 VSNVAVVSLLRNKNGGETLILKKKKM 60 (171)
Q Consensus 35 ~~~~~ki~liG~~~~GKttli~~~~~ 60 (171)
..+...|++.|++|+|||+|++.+..
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999987
Done!