RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11510
(171 letters)
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 148 bits (376), Expect = 4e-46
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 48 NGGETLILKKKKM--------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFEST 90
G+T + + + +WD+GGQ RS W Y
Sbjct: 32 YSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGV 91
Query: 91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
++++VD+AD+ ++E ELH LL + +L G +LV NK+D+ GAL +++
Sbjct: 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIE 147
Score = 38.3 bits (90), Expect = 4e-04
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+ +WD+GGQ RS Y
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYC 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 145 bits (368), Expect = 4e-45
Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
N G+T +LK+ I + + + LN+WD+GGQ+ +R YWR+YFE+TD
Sbjct: 26 NAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTD 85
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
LI+V+DSAD++R E+ +EL ELL+EE+L+ +L+FANKQD+ A +I
Sbjct: 86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 140
Score = 37.6 bits (88), Expect = 6e-04
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
FKLN+WD+GGQ+ +R Y SY+
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYF 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 145 bits (367), Expect = 6e-45
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
N G+T IL + M + +WD+GGQ+SLRS W Y+ +T+
Sbjct: 31 NAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTE 90
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
+I VVDS D+ R+ EL+++L E L A LL+FANKQD++ +T +I
Sbjct: 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ 145
Score = 37.6 bits (88), Expect = 6e-04
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+ +WD+GGQ+SLRS +YY
Sbjct: 65 TRFLMWDIGGQESLRSSWNTYY 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 144 bits (366), Expect = 1e-44
Identities = 71/115 (61%), Positives = 81/115 (70%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
N G+T ILKK I T + LNIWDVGGQKSLRSYWRNYFESTD
Sbjct: 28 NAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTD 87
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
GLIWVVDSAD++R++DC REL LL EERLAGATLL+FANKQD+ GAL+ I+
Sbjct: 88 GLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQE 142
Score = 37.2 bits (87), Expect = 8e-04
Identities = 18/22 (81%), Positives = 20/22 (90%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
FKLNIWDVGGQKSLRSY +Y+
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYF 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 143 bits (364), Expect = 2e-44
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
K +D+GG R W++YF +G++++VD+AD R ++ EL L L
Sbjct: 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 126
Query: 126 LLVFANKQDIEGALTPEDI 144
++ NK D A++ ++
Sbjct: 127 FVILGNKIDAPNAVSEAEL 145
Score = 36.8 bits (86), Expect = 0.001
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
K +D+GG R Y+
Sbjct: 67 IKFTTFDLGGHIQARRLWKDYF 88
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 151 bits (383), Expect = 3e-44
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
G+T IL K K+ + T +K N+WDVGGQ +R WR+Y+ T
Sbjct: 332 AAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 391
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
GLI+VVD AD+ R+++ +ELH ++ + + A +L+FANKQD+ A+ P +I+
Sbjct: 392 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 446
Score = 39.1 bits (91), Expect = 3e-04
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
K N+WDVGGQ +R YY
Sbjct: 366 VKFNVWDVGGQDKIRPLWRHYY 387
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 143 bits (362), Expect = 3e-44
Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
G+T IL + ++ + T +K +WD+GG S+R YWR Y+ +TD
Sbjct: 17 GAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTD 76
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
+I+VVDS D+ R+ EL +L+EE L A L+VFANKQD+E A+T ++ N
Sbjct: 77 AVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMAN 131
Score = 36.8 bits (86), Expect = 0.001
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
K +WD+GG S+R Y YY
Sbjct: 51 LKFQVWDLGGLTSIRPYWRCYY 72
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 141 bits (359), Expect = 6e-44
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
G+T IL K K+ + T +K +WDVGGQ +R WR+YF++T
Sbjct: 10 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 69
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
GLI+VVDS D+ R+ + EL +L E+ L A LLVFANKQD+ A+ +I +
Sbjct: 70 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 124
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+WDVGGQ +R Y+
Sbjct: 44 ISFTVWDVGGQDKIRPLWRHYF 65
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 142 bits (361), Expect = 6e-44
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
N G+T IL + + + T ++K +WD+GGQ +R YWR YF TD
Sbjct: 32 NAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTD 91
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
+I+VVDS D+ R+ EL+ LL E+ L + LL+FANKQD+ A + +I
Sbjct: 92 AVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAE 146
Score = 36.1 bits (84), Expect = 0.002
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+WD+GGQ +R Y Y+
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYF 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 143 bits (362), Expect = 7e-44
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM------IMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTD 91
N G+T +L K + T +D+GG R W+NY + +
Sbjct: 35 NAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAIN 94
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
G++++VD AD RL + EL L+ +E +A +L+ NK D A++ E ++
Sbjct: 95 GIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLRE 149
Score = 36.1 bits (84), Expect = 0.002
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+D+GG R +Y
Sbjct: 69 MTFTTFDLGGHIQARRVWKNYL 90
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 146 bits (371), Expect = 7e-44
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 10 WDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM--------- 60
W + + G+ + + + G+T IL K K+
Sbjct: 142 WSLESSPAQNWTPPQPRGLFGKKEMRILMVGLD-----AAGKTTILYKLKLGEIVTTIPT 196
Query: 61 ----IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH 113
+ T +K +WDVGGQ +R WR+YF++T GLI+VVDS D+ R+ + EL
Sbjct: 197 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 256
Query: 114 ELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
+L E+ L A LLVFANKQD+ A+ +I +
Sbjct: 257 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 289
Score = 38.3 bits (89), Expect = 6e-04
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+WDVGGQ +R Y+
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYF 230
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 142 bits (359), Expect = 1e-43
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
N G+T IL + M + +WD+GGQ+SLRS W Y+ +T+
Sbjct: 26 NAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTE 85
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
+I VVDS D+ R+ EL+++L E L A LL+FANKQD++ +T +I
Sbjct: 86 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ 140
Score = 36.1 bits (84), Expect = 0.002
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+ +WD+GGQ+SLRS +YY
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYY 81
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 141 bits (357), Expect = 3e-43
Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
G+T IL + ++ + T +K LN+WD+GGQ S+R YWR Y+ T
Sbjct: 28 GAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTA 87
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
+I+VVDS DK R+ ++ELH +LQEE L A LLVFANKQD GAL+ ++
Sbjct: 88 AVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSK 142
Score = 35.7 bits (83), Expect = 0.003
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
KLN+WD+GGQ S+R Y YY
Sbjct: 62 LKLNVWDLGGQTSIRPYWRCYY 83
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 139 bits (352), Expect = 1e-42
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 16/115 (13%)
Query: 48 NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
G+T IL K K+ + T +K +WDVGGQ +R WR+YF++T
Sbjct: 39 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98
Query: 92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
GLI+VVDS D+ R+++ A EL ++LQE+ L A LLVFANKQD+ A+ ++ +
Sbjct: 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTD 153
Score = 33.8 bits (78), Expect = 0.013
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+WDVGGQ +R Y+
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYF 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 139 bits (352), Expect = 1e-42
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG-- 123
++D+ GQ R+ W +Y++ +I+V+DS+D+ R+ EL LL +
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR 126
Query: 124 ATLLVFANKQDIEGALTPEDIKN 146
+L FANK D+ A+T +
Sbjct: 127 IPILFFANKMDLRDAVTSVKVSQ 149
Score = 37.6 bits (88), Expect = 7e-04
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
++D+ GQ R+ YY
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYY 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 115 bits (289), Expect = 7e-33
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 51 ETLILKKKKMIMTFRFKLNIWDVGGQKSLR-SYWRNYFESTDGLIWVVDSADK-RRLEDC 108
+ + L + D+ G +SLR + S +++VVDSA R ++D
Sbjct: 44 AIYKVNNNR-----GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98
Query: 109 ARELHELLQEERLA--GATLLVFANKQDIEGALTPEDIKNVSEK 150
A L+++L + +LL+ NKQDI A + + I+ EK
Sbjct: 99 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 142
Score = 29.7 bits (67), Expect = 0.39
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 5 FKLNIWDVGGQKSLR 19
L + D+ G +SLR
Sbjct: 54 NSLTLIDLPGHESLR 68
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 110 bits (277), Expect = 3e-31
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFES----TDGLIWVVDSA-DKRRLEDCARELHELLQEER 120
+ + D G LR +Y ++ GLI++VDS D ++L A L ++L
Sbjct: 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 150
Query: 121 L---AGATLLVFANKQDIEGALTPEDIKNVSEKA-TKVKLNKQ 159
G +L+ NK ++ A P IK+ E KV ++
Sbjct: 151 SSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 193
Score = 31.2 bits (71), Expect = 0.10
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+ + D G LR Y
Sbjct: 91 SGVTLVDFPGHVKLRYKLSDYL 112
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 110 bits (276), Expect = 8e-31
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFES----TDGLIWVVDSA-DKRRLEDCARELHELLQEER 120
+ + D G LR +Y ++ GLI++VDS D ++L A L ++L
Sbjct: 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 114
Query: 121 L---AGATLLVFANKQDIEGALTPEDIKNVSEK 150
G +L+ NK ++ A P IK+ E
Sbjct: 115 SSCENGIDILIACNKSELFTARPPSKIKDALES 147
Score = 30.5 bits (69), Expect = 0.17
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 5 FKLNIWDVGGQKSLRSY--SYY 24
+ + D G LR Y
Sbjct: 55 SGVTLVDFPGHVKLRYKLSDYL 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 108 bits (272), Expect = 2e-30
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
+ F+ + +++ V GQ + + DG+++V DSA RL A + + +
Sbjct: 67 GEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMREN 125
Query: 119 -----ERLAGATLLVFANKQDIEGALTPEDIK 145
L +++ NK+D+ AL E ++
Sbjct: 126 LAEYGLTLDDVPIVIQVNKRDLPDALPVEMVR 157
Score = 31.6 bits (72), Expect = 0.074
Identities = 4/24 (16%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 3 FRFKLNIWDVGGQKSLRSY--SYY 24
F+ + +++ V GQ +
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLIL 95
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 81.3 bits (200), Expect = 1e-19
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 71 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEE-----RLAGAT 125
G + S+ + E DG I+V ++ +R E E ++
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPL 165
Query: 126 LLVFANKQDIEGALTPEDI 144
L++ Q + +
Sbjct: 166 LVLSCISQGDVKRMPCFYL 184
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 75.8 bits (186), Expect = 7e-18
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 52 TLILKKKKMIMTFRFKLNIWDVGGQKSLRSYW---RNYFESTDGLIWVVDSADKRRLEDC 108
T + K + + IWD GQ F T LI+V+D+ D
Sbjct: 55 TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALT 114
Query: 109 ARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK 145
+ + VF +K D +D K
Sbjct: 115 RLHITVSKAYKVNPDMNFEVFIHKVD----GLSDDHK 147
Score = 26.1 bits (57), Expect = 5.9
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 6 KLNIWDVGGQKSLRSYSYYGMGMLR 30
IWD GQ ++ + R
Sbjct: 70 NFQIWDFPGQMDFFDPTFDYEMIFR 94
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 75.4 bits (185), Expect = 5e-17
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 52 TLILKKKKMIMTFRFKLNIWDVGGQKS-----LRSYWRNYFESTDGLIWVVDSADKRRLE 106
T+ ++ + LN+WD GGQ + F+ LI V D L+
Sbjct: 38 TIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLK 97
Query: 107 DCARELHELLQEERLA-GATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSK 161
D L Q + + A + V +K D L D + + L++ S
Sbjct: 98 DIEIFAKALKQLRKYSPDAKIFVLLHKMD----LVQLDKREELFQIMMKNLSETSS 149
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 69.4 bits (169), Expect = 1e-14
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 72 DVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG----ATLL 127
G + S+ + E DG I+V ++ +R E H + + G L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 128 VFANKQDIEGALTPEDI 144
+ Q + +
Sbjct: 253 LSCISQGDVKRMPCFYL 269
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 59.7 bits (144), Expect = 3e-11
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 62 MTFRFKLNIWDVGGQKSLRSYW---RNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
+ L + ++ GQ + F+S L++V+DS D + L +++
Sbjct: 42 FSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD--EYINAITNLAMIIEY 99
Query: 119 --ERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQ 159
+ + V +K D ED K +++ + ++
Sbjct: 100 AYKVNPSINIEVLIHKVD----GLSEDFKVDAQRDIMQRTGEE 138
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 42.3 bits (100), Expect = 2e-05
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R L +WD GQ+ RS ++YF DG++ + D ++ + + +++
Sbjct: 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM-IEDAAHETV 134
Query: 125 TLLVFANKQDIEGALTPEDIKNVS 148
+++ NK DI E K V
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVP 158
Score = 27.6 bits (62), Expect = 1.5
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R L +WD GQ+ RS SY+
Sbjct: 76 RTVLQLWDTAGQERFRSIAKSYF 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 8e-05
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 30/126 (23%)
Query: 22 SYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRS 81
+Y ++ RP + +L R G +++ F GGQ +
Sbjct: 125 NYITARIMAKRP-FDKKSNSALFRAVGEGNA------QLVAIF---------GGQGNTDD 168
Query: 82 YW---RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA 138
Y+ R+ +++ L+ ++ A L EL++ A VF +I
Sbjct: 169 YFEELRDLYQTYHVLV-------GDLIKFSAETLSELIRTTLDAEK---VFTQGLNILEW 218
Query: 139 LT-PED 143
L P +
Sbjct: 219 LENPSN 224
Score = 35.8 bits (82), Expect = 0.005
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 49/156 (31%)
Query: 13 GGQKSLRSYSYYGMGM-LRHRPQVSNVA--VV----SLLRNKNGGETL-ILKKKKMIMTF 64
G Q+ GMGM L + S A V + ++ G L I+ + +T
Sbjct: 1625 GSQEQ-------GMGMDLY---KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI 1674
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELL-------Q 117
F GG+K R NY +I+ K + E +E++E +
Sbjct: 1675 HF-------GGEKGKRIR-ENY----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 118 EERLAGAT-------LLV-FANKQDI--EGALTPED 143
+ L+ AT L+ A +D+ +G L P D
Sbjct: 1723 KGLLS-ATQFTQPALTLMEKAAFEDLKSKG-LIPAD 1756
Score = 30.8 bits (69), Expect = 0.22
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 54/164 (32%)
Query: 8 NIWDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGET-LILKKKKMIMTFRF 66
++W+ +Y + + ++ + P N+ + GGE +++ M F
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPV--NLTIH------FGGEKGKRIRENYSAMIFE- 1694
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLED------------CARELHE 114
I D G+ ++ E + + ++K L A E
Sbjct: 1695 --TIVD--GKLKTEKIFKEINEHSTSYTF---RSEKGLLSATQFTQPALTLMEKA--AFE 1745
Query: 115 LLQEERL-------AG-------ATLLV-FANKQDIEGALTPED 143
L+ + L AG A L A ++ E
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAA--LASLA------DVMSIES 1781
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 39.8 bits (93), Expect = 1e-04
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
K IWD GQ+ S Y+ + + V D + + E L E+ +
Sbjct: 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIII 111
Query: 127 LVFANKQDIEGALTPEDIK 145
+ NK D +
Sbjct: 112 ALVGNKIDXLQEGGERKVA 130
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 39.1 bits (92), Expect = 2e-04
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL IWD GQ+ R+ Y+ G+I V D D+R + + + E A
Sbjct: 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDEA 109
Query: 125 TLLVFANKQDIEG-ALTPEDIKNVSEK 150
LL+ NK D+E +T + + ++++
Sbjct: 110 QLLLVGNKSDMETRVVTADQGEALAKE 136
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ KL IWD GQ+ R+ +YY
Sbjct: 51 KVKLQIWDTAGQERFRTITTAYY 73
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 39.3 bits (91), Expect = 2e-04
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 58 KKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD--KRRLEDCAR-ELHE 114
++DVGGQ++ R W + FE +I+ ++ + ED + + E
Sbjct: 175 VGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME 234
Query: 115 LLQ-------EERLAGATLLVFANKQDI 135
+ + + ++F NK DI
Sbjct: 235 TKELFDWVLKQPCFEKTSFMLFLNKFDI 262
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 38.5 bits (90), Expect = 3e-04
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL +WD GQ+ R+ Y+ G+I V D D+R + + + E A
Sbjct: 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEA 126
Query: 125 TLLVFANKQDIE 136
LL+ NK D+E
Sbjct: 127 QLLLVGNKSDME 138
Score = 27.7 bits (62), Expect = 1.7
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ KL +WD GQ+ R+ +YY
Sbjct: 68 KVKLQLWDTAGQERFRTITTAYY 90
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 38.4 bits (90), Expect = 4e-04
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL IWD GQ+ R+ +Y+ G+I V D + L+EL
Sbjct: 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 122
Query: 125 TLLVFANKQDIE 136
++ NK D E
Sbjct: 123 VNMLVGNKIDKE 134
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ KL IWD GQ+ R+ SYY
Sbjct: 63 KAKLAIWDTAGQERFRTLTPSYY 85
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 38.0 bits (89), Expect = 4e-04
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R KL IWD GQ+ R+ Y+ G + + D A++ + ++ A
Sbjct: 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ-IKTYSWDNA 128
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ NK D+E + ED + +++
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADD 156
Score = 27.6 bits (62), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R KL IWD GQ+ R+ +YY
Sbjct: 70 RIKLQIWDTAGQERYRTITTAYY 92
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 37.9 bits (89), Expect = 4e-04
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL +WD GQ+ RS Y+ L+ + D +K ++ L E + E
Sbjct: 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDV 117
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
L++ NK D + ED + ++++
Sbjct: 118 ALMLLGNKVDSAHERVVKREDGEKLAKE 145
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ KL +WD GQ+ RS ++YY
Sbjct: 59 KVKLQMWDTAGQERFRSVTHAYY 81
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 38.0 bits (89), Expect = 5e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
KL IWD GQ+ R+ +Y+ G+I V D D+ + + L E +
Sbjct: 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENV 122
Query: 125 TLLVFANKQDIE 136
L+ NK D+
Sbjct: 123 NKLLVGNKCDLT 134
Score = 27.6 bits (62), Expect = 1.6
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
KL IWD GQ+ R+ SYY
Sbjct: 64 TIKLQIWDTAGQERFRTITSSYY 86
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 38.1 bits (89), Expect = 5e-04
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
KL IWD GQ+ R+ +Y+ + G+I V D D+ L E + +
Sbjct: 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTV 114
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
L+ NK D++ + + K ++
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADA 142
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
KL IWD GQ+ R+ SYY
Sbjct: 56 TVKLQIWDTAGQERFRTITSSYY 78
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 37.9 bits (89), Expect = 5e-04
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R KL IWD GQ+ R+ Y+ G++ V D +++ ++ + ++E A
Sbjct: 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADV 114
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
++ NK D+ ++ E + ++
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALD 142
Score = 27.9 bits (63), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R KL IWD GQ+ R+ +YY
Sbjct: 56 RIKLQIWDTAGQERFRTITTAYY 78
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 38.0 bits (89), Expect = 6e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
KL IWD GQ+ R+ +Y+ G+I V D D+ + + L E +
Sbjct: 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENV 139
Query: 125 TLLVFANKQDIE 136
L+ NK D+
Sbjct: 140 NKLLVGNKCDLT 151
Score = 27.6 bits (62), Expect = 1.7
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
KL IWD GQ+ R+ SYY
Sbjct: 81 TIKLQIWDTAGQERFRTITSSYY 103
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 37.6 bits (88), Expect = 6e-04
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R KL IWD GQ+ R+ Y+ G I + D ++ + ++ A
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ-IKTYSWDNA 129
Query: 125 TLLVFANKQDIE 136
+++ NK D+E
Sbjct: 130 QVILVGNKCDME 141
Score = 27.6 bits (62), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R KL IWD GQ+ R+ +YY
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYY 93
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 37.6 bits (88), Expect = 6e-04
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA-- 122
+ KL IWD GQ+S RS R+Y+ G + V D + L + + +
Sbjct: 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA---RQHSSS 125
Query: 123 GATLLVFANKQDIE 136
+++ NK D+E
Sbjct: 126 NMVIMLIGNKSDLE 139
Score = 29.1 bits (66), Expect = 0.54
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
+ KL IWD GQ+S RS SYY
Sbjct: 69 QIKLQIWDTAGQESFRSITRSYY 91
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 37.6 bits (88), Expect = 7e-04
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R KL IWD GQ+ R+ ++Y+ S +G I D + + + +++ +
Sbjct: 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED-VRKYAGSNI 135
Query: 125 TLLVFANKQDIE 136
L+ NK D+
Sbjct: 136 VQLLIGNKSDLS 147
Score = 28.0 bits (63), Expect = 1.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R KL IWD GQ+ R+ SYY
Sbjct: 77 RVKLQIWDTAGQERFRTITQSYY 99
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 37.6 bits (88), Expect = 7e-04
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R L +WD G + RS +F G + + D +++ + + +L
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 125 TLLVFANKQDIE 136
+++ NK D+E
Sbjct: 129 DIVLCGNKSDLE 140
Score = 27.6 bits (62), Expect = 1.7
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R L +WD G + RS +++
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFF 91
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 37.2 bits (87), Expect = 8e-04
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
KL IWD GQ+ RS R+Y+ G + V D + L + LA
Sbjct: 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA---RMLASQ 114
Query: 125 TLLVF--ANKQDIE 136
+++ NK+D++
Sbjct: 115 NIVIILCGNKKDLD 128
Score = 27.9 bits (63), Expect = 1.3
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
KL IWD GQ+ RS SYY
Sbjct: 58 YVKLQIWDTAGQERFRSVTRSYY 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 37.2 bits (87), Expect = 8e-04
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA-- 122
KL IWD GQ+ RS R+Y+ G + V D + A L + LA
Sbjct: 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA---RTLASP 129
Query: 123 GATLLVFANKQDIE 136
+++ NK+D++
Sbjct: 130 NIVVILCGNKKDLD 143
Score = 28.0 bits (63), Expect = 1.3
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
KL IWD GQ+ RS SYY
Sbjct: 73 TVKLQIWDTAGQERFRSVTRSYY 95
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 37.2 bits (87), Expect = 8e-04
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ +L IWD GQ+ S Y+ S G+I V D K +D + + + + A
Sbjct: 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM-IDKYASEDA 132
Query: 125 TLLVFANKQDIE 136
LL+ NK D E
Sbjct: 133 ELLLVGNKLDCE 144
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ +L IWD GQ+ S +YY
Sbjct: 74 KIRLQIWDTAGQERFNSITSAYY 96
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 37.2 bits (87), Expect = 9e-04
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL IWD GQ+ RS ++Y+ S + LI D + L E +++
Sbjct: 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKV 132
Query: 125 TLLVFANKQDIE 136
++ NK D+
Sbjct: 133 ITVLVGNKIDLA 144
Score = 28.0 bits (63), Expect = 1.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ KL IWD GQ+ RS SYY
Sbjct: 74 KVKLQIWDTAGQERFRSITQSYY 96
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 37.3 bits (87), Expect = 0.001
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA 122
F+ L +WD GQ+ RS +F G + + D ++ + + +L
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 123 GATLLVFANKQDIE 136
+++ NK D+
Sbjct: 141 NPDIVLIGNKADLP 154
Score = 27.7 bits (62), Expect = 1.5
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 2 TFRFKLNIWDVGGQKSLRS--YSYY 24
F+ L +WD GQ+ RS +++
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFF 105
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 36.9 bits (86), Expect = 0.001
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R KL IWD G + R+ Y+ G I + D ++ + ++ A
Sbjct: 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNA 114
Query: 125 TLLVFANKQDIE 136
+L+ NK D+E
Sbjct: 115 QVLLVGNKCDME 126
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R KL IWD G + R+ +YY
Sbjct: 56 RIKLQIWDTAGLERYRTITTAYY 78
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 36.8 bits (86), Expect = 0.001
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL IWD GQ+ R+ R+Y+ G + V D + + L + +
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNT 121
Query: 125 TLLVFANKQDIE 136
+++ NK D+E
Sbjct: 122 VIILIGNKADLE 133
Score = 27.9 bits (63), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ KL IWD GQ+ R+ SYY
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYY 85
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 37.0 bits (85), Expect = 0.002
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA--DKRRLEDCARE-LHELLQ----- 117
++DVGGQ+S R W + FE +I+ V + D ED +HE ++
Sbjct: 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252
Query: 118 --EERLAGATLLVFANKQDI 135
+ ++++F NK+D+
Sbjct: 253 CNNKWFTDTSIILFLNKKDL 272
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 36.5 bits (85), Expect = 0.002
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
K IWD GQ+ R Y+ G + V D A E+ R L E L++ +
Sbjct: 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNI 111
Query: 125 TLLVFANKQDIE 136
+++ NK D+
Sbjct: 112 VIMLVGNKSDLR 123
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
K IWD GQ+ R +YY
Sbjct: 53 TIKAQIWDTAGQERYRRITSAYY 75
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 36.0 bits (84), Expect = 0.002
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL IWD GQ+ R+ Y+ T G+I V D + R LHE+ +
Sbjct: 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDV 114
Query: 125 TLLVFANKQDIE 136
++ NK D
Sbjct: 115 CRILVGNKNDDP 126
Score = 27.9 bits (63), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
+ KL IWD GQ+ R+ +YY
Sbjct: 57 KVKLQIWDTAGQERFRTITSTYY 79
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 36.2 bits (84), Expect = 0.002
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R K IWD GQ+ R+ Y+ G + V D + E+C L E L+E
Sbjct: 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNV 119
Query: 125 TLLVFANKQDIE 136
+ + NK D+
Sbjct: 120 AVGLIGNKSDLA 131
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
R K IWD GQ+ R+ +YY
Sbjct: 61 RIKAQIWDTAGQERYRAITSAYY 83
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 36.0 bits (84), Expect = 0.002
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 52 TLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARE 111
+ + K+ + +WD GQ+ +S ++ D + V D + E+
Sbjct: 49 EVTVDGDKVA-----TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 103
Query: 112 LHELLQ---EERLAGATLLVFANKQDIEGA 138
E L ++ NK D E +
Sbjct: 104 RDEFLVHANVNSPETFPFVILGNKIDAEES 133
Score = 25.6 bits (57), Expect = 7.7
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRS--YSYY 24
+ +WD GQ+ +S ++Y
Sbjct: 59 TMQVWDTAGQERFQSLGVAFY 79
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 36.1 bits (84), Expect = 0.002
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
+L +WD G + RS +Y + + V D + + + + + ++ ER + +
Sbjct: 66 RLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD-VRTERGSDVII 124
Query: 127 LVFANKQDIE 136
++ NK D+
Sbjct: 125 MLVGNKTDLA 134
Score = 26.5 bits (59), Expect = 3.6
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
+L +WD G + RS SY
Sbjct: 66 RLQLWDTAGLERFRSLIPSYI 86
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 36.0 bits (83), Expect = 0.003
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
K +IWD GQ+ S Y+ I V D ++ L+ +++L
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY--I 149
Query: 125 TLLVFANKQDIE 136
+LV ANK D
Sbjct: 150 IILV-ANKIDKN 160
Score = 27.1 bits (60), Expect = 2.5
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
K +IWD GQ+ S YY
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYY 114
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 36.2 bits (83), Expect = 0.003
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 71 WDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEER 120
DVGGQ+S R W + FE+ ++++V ++ + R+E+ ++
Sbjct: 172 VDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231
Query: 121 LAGATLLVFANKQDI 135
+++++F NK+D+
Sbjct: 232 FQNSSVILFLNKKDL 246
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 36.3 bits (83), Expect = 0.003
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 61 IMTFRFKLN-----IWDVGGQKSLRSYWRNYFESTDGLIWVVDSA--DKRRLEDCARE-L 112
I +F+++ ++DVGGQ+ R W F +I+VV S+ + ED L
Sbjct: 207 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL 266
Query: 113 HELLQ-------EERLAGATLLVFANKQDI 135
E L L ++++F NKQD+
Sbjct: 267 QEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 35.2 bits (82), Expect = 0.004
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQ---EERL 121
+ IWD GQ+ RS ++ +D + D + ++ + E + +
Sbjct: 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP 114
Query: 122 AGATLLVFANKQDIE 136
++ NK DI
Sbjct: 115 ESFPFVILGNKIDIS 129
Score = 25.9 bits (58), Expect = 5.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSYY 24
+ IWD GQ +SLR+ +Y
Sbjct: 55 FVTMQIWDTAGQERFRSLRT-PFY 77
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 35.8 bits (82), Expect = 0.004
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 61 IMTFRFKLN-----IWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRL 105
I + F++ + DVGGQ+S R W F+S ++++V S++ RL
Sbjct: 191 IHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRL 250
Query: 106 EDCARELHELLQEERLAGATLLVFANKQDI 135
+ ++ + ++++F NK D+
Sbjct: 251 TESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 35.2 bits (82), Expect = 0.004
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
+L +WD GQ+ RS +Y + + V D + ++ + + ++ ER + +
Sbjct: 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD-VRTERGSDVII 122
Query: 127 LVFANKQDIE 136
++ NK D+
Sbjct: 123 MLVGNKTDLS 132
Score = 26.4 bits (59), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
+L +WD GQ+ RS SY
Sbjct: 64 RLQLWDTAGQERFRSLIPSYI 84
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 34.9 bits (81), Expect = 0.005
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
K IWD G + R+ Y+ G + V D + R L E L + A
Sbjct: 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE-LYDHAEATI 131
Query: 125 TLLVFANKQDIE 136
+++ NK D+
Sbjct: 132 VVMLVGNKSDLS 143
Score = 27.2 bits (61), Expect = 2.4
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
K IWD G + R+ +YY
Sbjct: 73 AVKAQIWDTAGLERYRAITSAYY 95
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 34.4 bits (80), Expect = 0.006
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
L IWD GQ+ + Y+ ++G I V D D+ + + E L++ L
Sbjct: 56 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICL 114
Query: 127 LVFANKQDIE 136
+ NK D+E
Sbjct: 115 CIVGNKIDLE 124
Score = 25.9 bits (58), Expect = 5.6
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
L IWD GQ+ + YY
Sbjct: 56 NLAIWDTAGQERFHALGPIYY 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 35.0 bits (81), Expect = 0.007
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
K N+WD GQ+ Y+ I + D + ++ +L
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL--VRVCENI 120
Query: 125 TLLVFANKQDIE 136
+++ NK DI+
Sbjct: 121 PIVLCGNKVDIK 132
Score = 28.4 bits (64), Expect = 0.94
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSYY 24
K N+WD GQ LR YY
Sbjct: 63 PIKFNVWDTAGQEKFGGLRD-GYY 85
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 34.5 bits (80), Expect = 0.007
Identities = 12/72 (16%), Positives = 28/72 (38%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L+I D GQ+ + Y + +G + V + + D ++ + +
Sbjct: 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV 127
Query: 125 TLLVFANKQDIE 136
+++ NK D+
Sbjct: 128 PMVLVGNKCDLP 139
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 34.5 bits (80), Expect = 0.009
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
K IWD GQ+ S Y+ + + V D + + + E L+E +
Sbjct: 73 KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVM 131
Query: 127 LVFANKQDIE 136
+ NK D+
Sbjct: 132 AIAGNKCDLS 141
Score = 26.0 bits (58), Expect = 4.9
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
K IWD GQ+ S YY
Sbjct: 73 KFLIWDTAGQERFHSLAPMYY 93
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 34.5 bits (80), Expect = 0.009
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA-- 122
K IWD G + R+ Y+ G + V D A E+ R L EL A
Sbjct: 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL---RDHADS 133
Query: 123 GATLLVFANKQDIE 136
+++ NK D+
Sbjct: 134 NIVIMLVGNKSDLR 147
Score = 27.6 bits (62), Expect = 1.9
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRS--YSYY 24
K IWD G + R+ +YY
Sbjct: 77 TIKAQIWDTAGLERYRAITSAYY 99
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 34.1 bits (79), Expect = 0.010
Identities = 13/72 (18%), Positives = 29/72 (40%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L+I D GQ+ + Y + +G + V + + ED ++ + +
Sbjct: 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV 110
Query: 125 TLLVFANKQDIE 136
+++ NK D+
Sbjct: 111 PMVLVGNKCDLP 122
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 34.1 bits (79), Expect = 0.010
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 52 TLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARE 111
+ L + L IWD+GGQ Y G++ V D + + E+
Sbjct: 47 RITLPGNLNV-----TLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW 101
Query: 112 LHEL--LQEERLAGATLLVFANKQDIE 136
+ + EE + + NK D+E
Sbjct: 102 YTVVKKVSEESETQPLVALVGNKIDLE 128
Score = 27.1 bits (61), Expect = 2.7
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRS--YSYY 24
L IWD+GGQ Y
Sbjct: 57 TLQIWDIGGQTIGGKMLDKYI 77
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 33.6 bits (78), Expect = 0.014
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
K IWD GQ+ S Y+ I V D ++ + E LQ +
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNI 112
Query: 125 TLLVFANKQDIE 136
+ + NK D+
Sbjct: 113 VIALSGNKADLA 124
Score = 25.9 bits (58), Expect = 5.1
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
K IWD GQ+ S YY
Sbjct: 54 TVKFEIWDTAGQERYHSLAPMYY 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 33.8 bits (78), Expect = 0.015
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE---ERL 121
+ IWD GQ+ +S ++ D + V D + E L +
Sbjct: 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP 115
Query: 122 AGATLLVFANKQDIE 136
+V NK D+E
Sbjct: 116 ENFPFVVLGNKIDLE 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.019
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 38/136 (27%)
Query: 16 KSLRSYSY---YGMGMLRHRPQVSNVAVVSLLRNKNG-GET----LILKKKKMIMTFRFK 67
LR G+ G G+T + K+ FK
Sbjct: 145 LELRPAKNVLIDGVL---------------------GSGKTWVALDVCLSYKVQCKMDFK 183
Query: 68 LNIW-DVGGQKS----LRSYWRNYFESTDGLIWVVDSAD--KRRLEDCARELHELLQEER 120
+ W ++ S L + ++ D + K R+ EL LL+ +
Sbjct: 184 I-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 121 LAGATLLVFANKQDIE 136
LLV N Q+ +
Sbjct: 243 YENC-LLVLLNVQNAK 257
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 33.3 bits (77), Expect = 0.021
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+L+I D GQ+ + Y + G + V D++ + + ++L+ +
Sbjct: 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF 115
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ NK D+E + +
Sbjct: 116 PVVLVGNKADLESQRQVPRSEASAFGAS 143
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 32.9 bits (76), Expect = 0.022
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
K IWD G + R+ Y+ + I V D + + E L++ +
Sbjct: 56 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVV 114
Query: 127 LVFANKQDIE 136
+ NK D+
Sbjct: 115 AIAGNKCDLT 124
Score = 26.3 bits (59), Expect = 4.6
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
K IWD G + R+ YY
Sbjct: 56 KFLIWDTAGLERFRALAPMYY 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 32.9 bits (76), Expect = 0.024
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
+L +WD GQ+ + + Y+ + V + D+ E + ++ +
Sbjct: 55 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPT 112
Query: 127 LVFANKQDIE 136
+ NK D+
Sbjct: 113 ALVQNKIDLL 122
Score = 25.5 bits (57), Expect = 7.8
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRS--YSYY 24
+L +WD GQ+ + +YY
Sbjct: 55 RLMLWDTAGQEEFDAITKAYY 75
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 32.9 bits (76), Expect = 0.025
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L++ D GQ+ + Y + DG + V DK E R +L+ +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ ANK D+ +T + K ++ K
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATK 152
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 32.7 bits (75), Expect = 0.034
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARE-LHELLQEERLAGAT 125
LN+WD G++ S ++ + V D + + D + L + + R + +
Sbjct: 57 VLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSP 114
Query: 126 LLVFANKQDIE 136
+++ D+
Sbjct: 115 VILVGTHLDVS 125
Score = 27.7 bits (62), Expect = 1.6
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
LN+WD G++ S +
Sbjct: 57 VLNVWDFAGREEFYSTHPHFM 77
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 33.0 bits (75), Expect = 0.034
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ WD GGQ+ + + + + + + ++DS R + + +
Sbjct: 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIE-----KYGGKS 151
Query: 125 TLLVFANKQDIE 136
++V NK D
Sbjct: 152 PVIVVMNKIDEN 163
Score = 26.5 bits (58), Expect = 5.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 4 RFKLNIWDVGGQKSLRS 20
+ WD GGQ+ + +
Sbjct: 97 ECLFHFWDFGGQEIMHA 113
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 32.5 bits (75), Expect = 0.035
Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L+I D GQ+ + Y + +G + V + + ED + ++ + +
Sbjct: 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV 109
Query: 125 TLLVFANKQDIEG-ALTPEDIKNVSEK 150
+++ NK D+ + ++++
Sbjct: 110 PMVLVGNKSDLAARTVESRQAQDLARS 136
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 32.3 bits (74), Expect = 0.042
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
K N+WD GQ+ Y+ G I D + ++ AR + E Q A +
Sbjct: 62 KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKE-FQAVVGNEAPI 120
Query: 127 LVFANKQDIE 136
+V ANK DI+
Sbjct: 121 VVCANKIDIK 130
Score = 28.1 bits (63), Expect = 1.3
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 6 KLNIWDVGGQ---KSLRSYSYY 24
K N+WD GQ L+ YY
Sbjct: 62 KFNVWDTAGQEKKAVLKD-VYY 82
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 32.2 bits (74), Expect = 0.048
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 65 RFKLNIWDVGGQKSLR-SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG 123
R K+ +WD GQ+ R S ++Y+ + +++V D + + E Q
Sbjct: 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND 127
Query: 124 ATLLVFANKQDIE 136
++ NK D+
Sbjct: 128 IPRILVGNKCDLR 140
Score = 26.4 bits (59), Expect = 4.6
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 4 RFKLNIWDVGGQKSLRS---YSYY 24
R K+ +WD GQ+ R YY
Sbjct: 68 RIKIQLWDTAGQERFRKSMVQHYY 91
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 32.1 bits (74), Expect = 0.051
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ L I D G + + Y ++ G V + D ++L+ +
Sbjct: 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV 109
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEKATKVK 155
+++ NK D+E + E +N++ +
Sbjct: 110 PMILVGNKCDLEDERVVGKEQGQNLARQWCNCA 142
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 31.7 bits (73), Expect = 0.059
Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L I D G + S Y ++ G I V +++ +D ++++ +R
Sbjct: 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV 109
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ NK D+E ++ + + ++E+
Sbjct: 110 PVILVGNKVDLESEREVSSSEGRALAEE 137
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 31.7 bits (73), Expect = 0.066
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+++I D GQ+ + NYF S +G + V + A ++L+ +
Sbjct: 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 110
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
L+ NK D+E ++ E+ KN +++
Sbjct: 111 PFLLVGNKSDLEDKRQVSVEEAKNRADQ 138
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 31.7 bits (73), Expect = 0.071
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
K IWD GQ+ S Y+ I V D ++ E + + E LQ + +
Sbjct: 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE-LQAQGNPNMVM 120
Query: 127 LVFANKQDIE 136
+ NK D+
Sbjct: 121 ALAGNKSDLL 130
Score = 25.6 bits (57), Expect = 7.1
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 6 KLNIWDVGGQKSLRSY--SYY 24
K IWD GQ+ S YY
Sbjct: 62 KFEIWDTAGQERYHSLAPMYY 82
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 31.7 bits (73), Expect = 0.074
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ L + D GQ + + Y +G I V + E +LL
Sbjct: 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI 112
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ NK+D+ ++ E+ K ++E
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAES 140
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 31.5 bits (72), Expect = 0.077
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 4/77 (5%)
Query: 65 RFKLNIW--DVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA 122
+ ++ D G + Y+ I V D + E C L
Sbjct: 70 TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR 129
Query: 123 GATLLVF--ANKQDIEG 137
L ANK D+
Sbjct: 130 ERPLRAVLVANKTDLPP 146
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 31.4 bits (72), Expect = 0.090
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+++I D GQ+ + NYF S +G + V + A ++L+ +
Sbjct: 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 124
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
L+ NK D+E ++ E+ KN +E+
Sbjct: 125 PFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 31.4 bits (72), Expect = 0.094
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+++I D GQ+ + NYF S +G + V + A ++L+ +
Sbjct: 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 120
Query: 125 TLLVFANKQDIE 136
L+ NK D+E
Sbjct: 121 PFLLVGNKSDLE 132
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 30.7 bits (70), Expect = 0.17
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L I D G + R I V K+ LE+ +++L+ + + +
Sbjct: 55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEE-LGPIYKLIVQIKGSVE 113
Query: 125 T---LLVFANKQDIEG-ALTPEDIKNVSEK 150
+LV NK D + + + V+++
Sbjct: 114 DIPVMLV-GNKCDETQREVDTREAQAVAQE 142
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 30.2 bits (69), Expect = 0.24
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 67 KLNIWDVGGQKSLRSYWR-NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
L ++D+ Q + + + ++ D + V D+R L L
Sbjct: 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 111
Query: 126 LLVFANKQDIE 136
+++ NK D+
Sbjct: 112 VILVGNKSDLA 122
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 29.8 bits (68), Expect = 0.26
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L I D G + R I V ++ LE+ + ++E Q + G
Sbjct: 50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEE-LKPIYE--QICEIKGD 106
Query: 125 T-----LLVFANKQDIEG--ALTPEDIKNVSEK 150
+LV NK D + + + ++
Sbjct: 107 VESIPIMLV-GNKCDESPSREVQSSEAEALART 138
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.9 bits (68), Expect = 0.30
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 67 KLNIWDVGGQKSLRSYWRN-YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
L ++D+ Q + R+ ++ D + V D+R L L
Sbjct: 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 132
Query: 126 LLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ NK D+ ++ E+ ++++
Sbjct: 133 VILVGNKSDLARSREVSLEEGRHLAGT 159
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 29.5 bits (67), Expect = 0.40
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
F L++ D GQ ++ G + V + +L +
Sbjct: 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ NK D+ + + K ++E
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAES 158
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 28.7 bits (65), Expect = 0.70
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
L + D + R+ R Y + V ++ + ELL
Sbjct: 69 VHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQR 126
Query: 126 ----LLVFANKQDIE 136
LL+ NK D+
Sbjct: 127 SIPALLL-GNKLDMA 140
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 28.7 bits (65), Expect = 0.71
Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 67 KLNIWDVGGQKSLRSYW--RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
L + D + L W + + + V AD+ E + +L + +
Sbjct: 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV 112
Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
+++ NK D+ ++ E+ + +
Sbjct: 113 PIILVGNKADLARCREVSVEEGRACAVV 140
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 28.3 bits (64), Expect = 0.96
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 66 FKLNIWDVGGQKSLRSYWR-NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ I D GQ+ + R + +G + V D D+ E+ + L + ++
Sbjct: 76 VSMEILDTAGQE--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV 133
Query: 125 TLLVFANKQDIE 136
TL++ NK D++
Sbjct: 134 TLILVGNKADLD 145
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 28.2 bits (64), Expect = 1.1
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
L ++D+ Q R + D + V DK E + +L + + +
Sbjct: 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI 109
Query: 127 LVFANKQDIE 136
++ NK D+
Sbjct: 110 ILVGNKSDLV 119
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 27.2 bits (59), Expect = 2.5
Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 57 KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCA------R 110
K+ + + + G + + + ++ ++ A+K L +
Sbjct: 109 KEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNIVK 168
Query: 111 ELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATK 153
+ +EL + + G +V + + I G L P D+ E+ +
Sbjct: 169 KHYELGIQFGVRGTPSIVTSTGELIGGYLKPADLLRALEETAQ 211
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 26.9 bits (60), Expect = 3.4
Identities = 16/114 (14%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 67 KLNIWDVGGQKS-LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
L++W+ G+ L + + D + V D+ E + +L + +
Sbjct: 60 LLDMWENKGENEWLHD---HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 126 LLVFANKQDIEG--ALTPEDIKNVSEKAT--------KVKLNKQSKFQVLLNEV 169
+++ NK D+ ++ + + + V+ N + F+ ++ +V
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 26.7 bits (59), Expect = 3.5
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
L +WD GQ LR SY
Sbjct: 77 PVNLGLWDTAGQEDYDRLRPLSY 99
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 27.2 bits (60), Expect = 3.5
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 1 MTFRFKLNIWDVGGQKSLRSYSYYGMGML-RHRPQVSNVAVVSLLRN 46
M F+ +L+ Q Y + +L +VS
Sbjct: 1 MAFKIQLDTLG---QLPGLLSIYTQISLLYPVSDSSQYPTIVSTFEQ 44
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 26.7 bits (59), Expect = 3.7
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
L+IWD GQ LR Y
Sbjct: 81 PVHLHIWDTAGQDDYDRLRPLFY 103
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 26.6 bits (59), Expect = 4.0
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
L +WD GQ LR SY
Sbjct: 55 TVNLGLWDTAGQEDYNRLRPLSY 77
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 26.4 bits (59), Expect = 4.2
Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ L I D GG L+ + D +++V D+ + L +
Sbjct: 66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV 120
Query: 125 TLLVFANKQDIEGALTPEDIKNVSEK 150
+++ + ++ + + + +
Sbjct: 121 PMVLVGTQDA----ISAANPRVIDDS 142
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein,
transferase; 1.60A {Sulfolobus solfataricus} SCOP:
c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A
1je1_A* 1jp7_A 1jpv_A
Length = 236
Score = 26.7 bits (59), Expect = 4.4
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 122 AGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNK 158
+ L+V N +T E+++ K L+
Sbjct: 197 SATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDT 233
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 26.5 bits (59), Expect = 4.6
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 16/56 (28%)
Query: 91 DGLIW-VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK 145
GL+ VV A + + A + EL+ R EG LTP +++
Sbjct: 114 RGLLVPVVTDAQDKNTRELASRVAELITGAR---------------EGTLTPAELR 154
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 26.3 bits (58), Expect = 4.6
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQK---SLRSYSY 23
R +L++WD G ++R SY
Sbjct: 75 RIELSLWDTSGSPYYDNVRPLSY 97
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 26.2 bits (58), Expect = 4.9
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
+ +L +WD GQ LR SY
Sbjct: 72 QVELALWDTAGQEDYDRLRPLSY 94
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 26.2 bits (58), Expect = 5.4
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
R +L++WD G ++R SY
Sbjct: 54 RIELSLWDTSGSPYYDNVRPLSY 76
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 26.1 bits (58), Expect = 6.2
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ I + G + + D +I+V D+ + LH L R G
Sbjct: 53 THLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQA-VSRLHGQLSSLRGEGR 106
Query: 125 T-----LLVFANKQDIE 136
L+ ++
Sbjct: 107 GGLALALVGTQDRISAS 123
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 6.2
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 123 GATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQ 163
G + + + GA+T + K + + + F
Sbjct: 1451 GGQA-IVVHPDYLYGAITEDRYNEYVAKVSAREKSAYKFFH 1490
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 25.8 bits (57), Expect = 6.2
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
F L++WD GQ LR SY
Sbjct: 70 EFILHLWDTAGQEEYDRLRPLSY 92
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 25.9 bits (57), Expect = 6.3
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
+ +L +WD GQ LR SY
Sbjct: 72 QVELALWDTAGQEDYDRLRPLSY 94
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 25.8 bits (56), Expect = 7.2
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL 127
R Y Y+ S + L+ LH+ L G TL+
Sbjct: 18 RDYLATYYSFDGS-----PSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 25.6 bits (56), Expect = 7.6
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
R +L++WD G ++R Y
Sbjct: 74 RVELSLWDTSGSPYYDNVRPLCY 96
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 25.8 bits (57), Expect = 7.7
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
+L + D GQ LR Y
Sbjct: 67 PVRLQLCDTAGQDEFDKLRPLCY 89
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C
3f3p_C 3ewe_B
Length = 570
Score = 25.9 bits (56), Expect = 8.1
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 84 RNYFESTDGLIWVVDSADKRRLEDCARELHE-----LLQEERLAGATLLVFANKQDIE 136
F + D + W++ + RL + A+E++ +L + ++ F+ E
Sbjct: 510 HYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNI-IESIANFSRAGKYE 566
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 25.8 bits (57), Expect = 8.1
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 121 LAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLLNEVSN 171
AG + + + A+TPE+ E+ K L+
Sbjct: 112 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVV----LALITYPDG 158
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 25.5 bits (56), Expect = 8.2
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
L +WD GQ LR SY
Sbjct: 52 PVNLGLWDTAGQEDYDRLRPLSY 74
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 25.5 bits (56), Expect = 8.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 4 RFKLNIWDVGGQ---KSLRSYSY 23
++ L ++D GQ LR SY
Sbjct: 65 QYLLGLYDTAGQEDYDRLRPLSY 87
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O
3jyv_O* 1ysh_E 1s1h_O
Length = 151
Score = 25.2 bits (55), Expect = 9.3
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 110 RELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKV-------KLNKQSKF 162
R+ H + Q + G ++ + + PED+ + +KA V + +K +KF
Sbjct: 55 RDAHGVTQARVITGNKIMRILKSNGLAPEI-PEDLYYLIKKAVSVRKHLERNRKDKDAKF 113
Query: 163 QVLLNE 168
+++L E
Sbjct: 114 RLILIE 119
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 25.7 bits (57), Expect = 9.8
Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 92 GLIWVVDSADKRRLEDCARELHELLQE---ERLAGAT-------LLVFANKQDIEGALTP 141
+KR+ ++ + +++L+ + +R A ++ + L
Sbjct: 192 NPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDD 251
Query: 142 EDI 144
E+I
Sbjct: 252 ENI 254
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei
structure initiative; 2.40A {Streptococcus pneumoniae}
SCOP: a.281.1.2
Length = 113
Score = 24.7 bits (54), Expect = 9.8
Identities = 4/51 (7%), Positives = 13/51 (25%), Gaps = 8/51 (15%)
Query: 129 FANKQDIEGALTPEDIKNVSEKATKVKLN--------KQSKFQVLLNEVSN 171
+ +++ N KQ + + L+++
Sbjct: 52 IQKLAQTGQMPDASFQAKMEGFGKQIQGNSLLSEFFTKQQQLAIYLSDIEK 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,513,725
Number of extensions: 140519
Number of successful extensions: 694
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 198
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)