RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11510
(171 letters)
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 49.2 bits (116), Expect = 2e-08
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 56 KKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR-LEDCARELHE 114
K I G + + S +++VVDSA +R ++D A L++
Sbjct: 38 IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQ 97
Query: 115 LLQEERLAGAT--LLVFANKQDIEGALTPEDIKNVSEK 150
+L + + LL+ NKQDI A + + I+ EK
Sbjct: 98 VLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 135
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 46.7 bits (110), Expect = 1e-07
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 57 KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108
K I + KL IWD GQ+ R+ Y+ G+I V D D+R +
Sbjct: 42 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI 93
Score = 26.3 bits (57), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
+ KL IWD GQ+ R+ +YY
Sbjct: 50 KVKLQIWDTAGQERFRTITTAYY 72
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 45.5 bits (107), Expect = 3e-07
Identities = 13/69 (18%), Positives = 29/69 (42%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
R KL IWD GQ+ R+ Y+ G++ V D +++ ++ + + +
Sbjct: 54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE 113
Query: 125 TLLVFANKQ 133
+++
Sbjct: 114 KMILGNKCD 122
Score = 24.7 bits (53), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 4 RFKLNIWDVGGQKSLRS 20
R KL IWD GQ+ R+
Sbjct: 54 RIKLQIWDTAGQERFRT 70
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 45.5 bits (107), Expect = 6e-07
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DKRRLEDC 108
+ +++DVGGQ+ R W F +I+VV S+ RL++
Sbjct: 40 TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA 99
Query: 109 ARELHELLQEERLAGATLLVFANKQD 134
+ L ++++F NKQD
Sbjct: 100 LNLFKSIWNNRWLRTISVILFLNKQD 125
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 44.1 bits (103), Expect = 1e-06
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 57 KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH 113
K + + KL IWD GQ+ R+ +Y+ G+I V D + L+
Sbjct: 47 KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 103
Score = 24.0 bits (51), Expect = 9.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1 MTFRFKLNIWDVGGQKSLRSYS 22
+ KL IWD GQ+ R+ +
Sbjct: 52 DGNKAKLAIWDTAGQERFRTLT 73
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 43.7 bits (102), Expect = 2e-06
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 57 KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH 113
K R KL IWD GQ+ R+ Y+ G I + D ++
Sbjct: 45 KTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWST 101
Score = 25.6 bits (55), Expect = 2.9
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
R KL IWD GQ+ R+ +YY
Sbjct: 53 RIKLQIWDTAGQERYRTITTAYY 75
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 43.7 bits (102), Expect = 2e-06
Identities = 23/99 (23%), Positives = 37/99 (37%)
Query: 57 KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELL 116
K + KL IWD GQ+ R+ +Y+ + G+I V D D+ L E+
Sbjct: 46 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 105
Query: 117 QEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVK 155
+ LLV + + D+ A K+
Sbjct: 106 RYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP 144
Score = 26.0 bits (56), Expect = 2.6
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
KL IWD GQ+ R+ SYY
Sbjct: 54 TVKLQIWDTAGQERFRTITSSYY 76
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 39.6 bits (91), Expect = 5e-05
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
+ + +WDVGGQ +R WR+YF++T GLI+VVDS D+ R+ + EL +L E
Sbjct: 37 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 96
Query: 119 ERLAGATLLVFANKQDIEGALTPEDI 144
+ L A LLVFANKQD+ A+ +I
Sbjct: 97 DELRDAVLLVFANKQDLPNAMNAAEI 122
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 39.1 bits (90), Expect = 7e-05
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 60 MIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEE 119
+ + KL +WD GQ+ RS Y+ L+ + D +K ++ L E+ +
Sbjct: 50 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA 109
Query: 120 RLAGATLLVFANKQDI-EGALTPEDIKNVSEK 150
+ A +L+ E + ED + ++++
Sbjct: 110 QHDVALMLLGNKVDSAHERVVKREDGEKLAKE 141
Score = 25.2 bits (54), Expect = 3.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 1 MTFRFKLNIWDVGGQKSLRS 20
+ KL +WD GQ+ RS
Sbjct: 52 DGVKVKLQMWDTAGQERFRS 71
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 38.4 bits (88), Expect = 1e-04
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108
KL IWD GQ+ RS R+Y+ G + V D +
Sbjct: 53 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL 96
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 37.1 bits (85), Expect = 3e-04
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
+ KL IWD GQ+ RS ++Y+ S + LI D + L E+ Q
Sbjct: 53 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 112
Query: 125 TLLVFANKQD 134
T+LV
Sbjct: 113 TVLVGNKIDL 122
Score = 24.8 bits (53), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 4 RFKLNIWDVGGQKSLRSY--SYY 24
+ KL IWD GQ+ RS SYY
Sbjct: 53 KVKLQIWDTAGQERFRSITQSYY 75
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 35.6 bits (81), Expect = 0.001
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
F+ L +WD GQ+ RS +F G + + D
Sbjct: 57 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 96
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.1 bits (69), Expect = 0.046
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 57 KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH 113
KK I R L IWD GQ+ + Y+ ++G I V D D+ + +
Sbjct: 43 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 99
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine
N-methyltransferase, PNMTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 263
Score = 30.6 bits (68), Expect = 0.072
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL 127
R+Y RN + G R L + ++G TL+
Sbjct: 16 RAYLRNNYAPPRGD----LCNPNGVGPWKLRCLAQTFATGEVSGRTLI 59
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 29.7 bits (66), Expect = 0.18
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
F +N+ D G S TDG + VVD+ E + +L++
Sbjct: 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI-----EGVCVQTETVLRQALGERI 149
Query: 125 TLLVFANKQDIEGALTPEDIKNVSEK 150
+V NK D +++ +
Sbjct: 150 KPVVVINKVDRALLELQVSKEDLYQT 175
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal
domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 161
Score = 27.0 bits (60), Expect = 0.96
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED 143
+ + +ELH+ + +F + E + P +
Sbjct: 22 TIRELCQELHDFYKNNNTFTYQKRLFLREFFPEQGMLPYE 61
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 150
Score = 25.9 bits (56), Expect = 1.7
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 106 EDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKA 151
+ ++ +EL + + G +V + + I G L P D+ E+
Sbjct: 104 PNIVKKHYELGIQFGVRGTPSIVTSTGELIGGYLKPADLLRALEET 149
>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 478
Score = 26.6 bits (58), Expect = 2.1
Identities = 5/32 (15%), Positives = 18/32 (56%)
Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFEST 90
++++ ++ D GG ++L+ W ++ ++
Sbjct: 224 RVLIPRIARVCKGDQGGLRTLQKKWTSFLKAR 255
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796
{Thermotoga maritima [TaxId: 2336]}
Length = 338
Score = 25.5 bits (56), Expect = 3.8
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 25 GMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKK 58
G+LRH V VV+ K + + +
Sbjct: 29 TYGLLRHSRLFKPVCVVAEHEGKMASDFVKPVRY 62
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 160
Score = 24.3 bits (53), Expect = 6.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 100 ADKRRLEDCARELHELLQEERLAGATLLVFANK 132
A++ +D R L L EE+ A L A +
Sbjct: 128 AEELGHDDIVRFLTTNLNEEKAANTKLNTVALR 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,040
Number of extensions: 26553
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 35
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)