BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11511
(631 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N SV++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKASVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFATLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEAAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEAAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 204 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 262
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 263 SYVRKDQDIVLSGLTAATLNEKAEVILG 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
R+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 25 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 64
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And Sodium
Length = 508
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 201 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 259
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 260 SYVRKDQDIVLSGLTAATLNEKAEVILG 287
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
R+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 25 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 64
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And Sodium
Length = 517
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 202 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 260
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 261 SYVRKDQDIVLSGLTAATLNEKAEVILG 288
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
R+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 25 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 64
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 205 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 263
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 264 SYVRKDQDIVLSGLTAATLNEKAEVILG 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 1 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 38
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 26 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 65
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 204 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 262
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 263 SYVRKDQDIVLSGLTAATLNEKAEVILG 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
R+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 37
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 25 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 64
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
SY + + I++ + + +N V++G
Sbjct: 267 SYVRKDQDIVLSGLTAATLNEKAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 519
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
FL+I VFL + ++ GL + + P+FE L D VW+ A QIF ++ + +GA+IT++
Sbjct: 208 FLVIRVFLLETPNGTAAD-GLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYA 266
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIG 384
S + + I++ + + +N V++G
Sbjct: 267 SAVRKDQDIVLSGLTAATLNEAAEVILG 294
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
KR+HW +++ ILA G ++G+GN RFP + + G
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGG 41
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 45 IEVPLQYCTSIVGNIRVFLVPYFIILFLCGIPILYMELAVGQF 87
+ P+Q + G F++PY I L GIP++++E A+G++
Sbjct: 29 LRFPVQAAENGGG---AFMIPYIIAFLLVGIPLMWIEWAMGRY 68
>pdb|2C8I|B Chain B, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 252
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 220 TSKVQFILACVGYSIGIGNLWRFPHKVLQISS 251
T+ VQ I+ G +G+GNL FPH+ + + +
Sbjct: 154 TNTVQSIVTNAGMGVGVGNLTIFPHQWINLRT 185
>pdb|1H8T|B Chain B, Echovirus 11
pdb|1UPN|B Chain B, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 262
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 220 TSKVQFILACVGYSIGIGNLWRFPHKVLQISS 251
T+ VQ I+ G +G+GNL FPH+ + + +
Sbjct: 163 TNTVQSIVTNAGMGVGVGNLTIFPHQWINLRT 194
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 267 SFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFE 326
+ V L+ F + + ++ YFTA++PF C + + +G+ + F
Sbjct: 718 TLVGKPLLAFRNLRPMLAADAQRYFTASLPFEKN----CGADHICQDNLGISFSFPGLKS 773
Query: 327 LLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
LL + +NA ++N +YG ITFS
Sbjct: 774 LLVGSNLELNAEVMVWNDGEDSYGTTITFS 803
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.143 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,713,251
Number of Sequences: 62578
Number of extensions: 692939
Number of successful extensions: 1674
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1611
Number of HSP's gapped (non-prelim): 74
length of query: 631
length of database: 14,973,337
effective HSP length: 105
effective length of query: 526
effective length of database: 8,402,647
effective search space: 4419792322
effective search space used: 4419792322
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)