RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11511
(631 letters)
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 423 bits (1089), Expect = e-142
Identities = 196/558 (35%), Positives = 284/558 (50%), Gaps = 119/558 (21%)
Query: 61 VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
FL+PYFI L LCGIPI ++E+A+GQ+T +G I K+CP FKG G +S +I F+++ Y
Sbjct: 38 AFLIPYFIFLVLCGIPIFFLEVALGQYTSQGGITAW-KICPLFKGIGYASAVIVFWLNIY 96
Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
Y V++A++L+Y SF S+LPW C N WNT+ C T + +L +N S S
Sbjct: 97 YIVILAWALFYLFNSFTSELPWTTCDNWWNTECC----VETYSNNNLSNLTKNCSNNTNS 152
Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
+P EEF W
Sbjct: 153 TSPVEEF----------------------------------------------------W 160
Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
+VL IS GI+ +G RWEL C ++WI+ YF +WK V+S+G+V+YFTAT P++++
Sbjct: 161 E--RRVLGISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVML 218
Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
+ L +TL G+ G+ ++ P+ L D +VW++AG QI F SY
Sbjct: 219 IILLIRGVTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQI-------------FFSYG- 264
Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
IG+ +G SYNK+NN
Sbjct: 265 ----------------------IGLGSLTALG--------------------SYNKFNNN 282
Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
D++++ +N+ TS G IF +G + E I V GPGL F+ YP+A++ L
Sbjct: 283 CYKDSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVSLL 342
Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWI-KRYLVCHEIVVLVVCIVS 539
P P WAVLFF LL L L+SQF VE VT+I D +P + RY EI V +VC+V
Sbjct: 343 PLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYR--REIFVAIVCLVC 400
Query: 540 FFFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKF 598
F GLP VT+GGIY FQL D+Y AS ++++AFFE +A++W+YG+D+ N+ M G
Sbjct: 401 FLIGLPMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADRFYDNIEDMIGYR 460
Query: 599 PSLYFRFCWSIAAPLLIL 616
P ++++CW P + L
Sbjct: 461 PGPWWKYCWKFLTPAICL 478
Score = 53.0 bits (128), Expect = 4e-07
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFP 243
R W++K+ F+L+ GY+IG+GN+WRFP
Sbjct: 1 RGKWSNKIDFLLSVAGYAIGLGNVWRFP 28
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 336 bits (864), Expect = e-110
Identities = 144/358 (40%), Positives = 209/358 (58%), Gaps = 60/358 (16%)
Query: 260 RWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRY 319
WEL C ++WILVY ++K V+SSG+V+YFTAT P++++F+ L +TL G+ G+ Y
Sbjct: 114 NWELALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGILY 173
Query: 320 FFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTIT 379
F P++ L D KVW A QIF S+ I +G +
Sbjct: 174 FLTPDWSKLLDPKVWYAAATQIFFSLSIGFGGL--------------------------- 206
Query: 380 SVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLI 439
ITY +SYNK++N I D ++VSI+NT+TS+L
Sbjct: 207 --------------ITY---------------ASYNKFDNNIYRDALIVSILNTLTSLLA 237
Query: 440 GVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLAL 499
G IF +G + +E + +V+ GPGL FVVYP+A+AK+P P W+VLFFF L L L
Sbjct: 238 GFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVPQLWSVLFFFMLFLLGL 297
Query: 500 NSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLID 559
+SQFA+VE +VT+I D FP+ KR +V L VC+V F GLPYVTQGGIY L+D
Sbjct: 298 DSQFAIVETIVTAIVDEFPKLRKR----KWLVTLGVCVVGFLLGLPYVTQGGIYILDLLD 353
Query: 560 HYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWSIAAPLLILI 617
+Y A+ +++ +A FE++A++WIYG D+ R++ M G PS+Y+R CW P+++L+
Sbjct: 354 YYAATFSLLVLALFELIAISWIYGVDRFLRDIEFMLGIPPSIYWRICWKFITPVILLV 411
Score = 116 bits (293), Expect = 5e-28
Identities = 41/76 (53%), Positives = 58/76 (76%)
Query: 61 VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
FL+PY I+L L GIP+ ++ELA+GQ+T RGP+G ++CP FKG G + V+ISF ++ Y
Sbjct: 37 AFLIPYLIMLLLVGIPLFFLELALGQYTSRGPVGAFWRICPLFKGVGYAQVVISFLVAIY 96
Query: 121 YNVLIAYSLYYFSTSF 136
YNV+IA++LYY SF
Sbjct: 97 YNVIIAWTLYYLFASF 112
Score = 53.3 bits (129), Expect = 2e-07
Identities = 15/32 (46%), Positives = 27/32 (84%)
Query: 217 DHWTSKVQFILACVGYSIGIGNLWRFPHKVLQ 248
+ W SK++F+L+C+GY++G+GN+WRFP+ +
Sbjct: 1 EQWGSKLEFLLSCIGYAVGLGNVWRFPYLAYE 32
Score = 29.0 bits (66), Expect = 9.1
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 1 MELAVGQFTRRGPIG 15
+ELA+GQ+T RGP+G
Sbjct: 56 LELALGQYTSRGPVG 70
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 314 bits (807), Expect = 3e-99
Identities = 179/566 (31%), Positives = 292/566 (51%), Gaps = 107/566 (18%)
Query: 61 VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
VFL+PY +I+F+ GIP+ ++E+A+GQF ++G I + + P FKG G +S++I FF +TY
Sbjct: 38 VFLIPYLLIVFVGGIPVFFLEIALGQFMKQGGINAWN-IAPLFKGLGYASMVIVFFCNTY 96
Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
Y +++ + LYY SF + LPW CG+ WNT++C + ++ + +
Sbjct: 97 YIMILVWGLYYLVHSFTNTLPWATCGHPWNTENC-----------TEIFRHEDCANGSLA 145
Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
+ S+ F N+S C ++ S V ++F W
Sbjct: 146 NSWSQTFLNLS-----CDELANKRSPV---------------IEF--------------W 171
Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
+KVL++S G+++ G WE++ C +W++VYF +WK V+S+G+++YFTA P++++
Sbjct: 172 E--NKVLRLSGGLEEPGALNWEMILCLLATWVIVYFCVWKGVKSTGKIVYFTALFPYVVL 229
Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
V L +TL G+ G+ Y+ P++ L + +VW++AG QI F SY
Sbjct: 230 IVLLVHGVTLPGALDGIIYYLKPDWSKLGEAQVWIDAGTQI-------------FFSYA- 275
Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
I +G +T + SYN+++N
Sbjct: 276 ----------------------------IGLGALTA--------------LGSYNRFHNN 293
Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
D ++++IN+ TS G +F +G + E I V GPGL F+ YP+A+ +
Sbjct: 294 CYRDAFILALINSGTSFFAGFVVFSVLGFMASEQGVDISKVAESGPGLAFIAYPKAVTLM 353
Query: 481 PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSF 540
P WA LFFF LL L L+SQF VE +T I D FP+ L EI + C++ F
Sbjct: 354 PVAPLWAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYGRLR-REITAALCCLLCF 412
Query: 541 FFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
L VTQGG+Y FQL D+Y+AS +++ AF+E V +AW+YG+D+ ++ M G P
Sbjct: 413 LIDLSMVTQGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYGADRFMDDIARMIGYRP 472
Query: 600 SLYFRFCWSIAAPLLILIRISLTHLL 625
+ ++CWS+ P L+ + I L H++
Sbjct: 473 LPWMKWCWSVITP-LVCVGIFLFHVV 497
Score = 47.2 bits (112), Expect = 2e-05
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVY 275
R+ WT ++ FI++CVG+++G+GN+WRFP+ + G+ F + FV I V+
Sbjct: 1 RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGV-----FLIPYLLIVFVGGIPVF 55
Query: 276 F 276
F
Sbjct: 56 F 56
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 308 bits (790), Expect = 2e-97
Identities = 174/559 (31%), Positives = 267/559 (47%), Gaps = 123/559 (22%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY ++ GIP+ YMELA+GQ+ R G I + K+CP FKG G + II+ ++++YY
Sbjct: 39 FLIPYTLMAIFGGIPLFYMELALGQYHRTGCISIWRKICPIFKGIGYAICIIALYVASYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
N +IA++LYY +SF + LPW C N WNT +C +D N++ + S
Sbjct: 99 NTIIAWALYYLISSFATTLPWTSCDNSWNTGNC---TNYFAKD--------NITWTLHST 147
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
+P+EEFY T V V S G+G+L
Sbjct: 148 SPAEEFY-------------------------------TRHV----LQVHRSTGLGDL-- 170
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
G W+L C F+ + +VYF++WK V++SG+V++ TAT P++++F
Sbjct: 171 ---------------GGISWQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLF 215
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
+ L TL G+ G+ Y+ P + L + VWV+A AQIF S+G +G ++ FSSYNK+
Sbjct: 216 ILLIRGATLPGAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSLGPGFGVLLAFSSYNKF 275
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
+N D +V S++N +TS + G IF +G + + V D S
Sbjct: 276 HNNCYQDALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPS--------- 326
Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
+FIT Y +A+A +P
Sbjct: 327 --------------------LLFIT--------------------------YAEAIANMP 340
Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPR-WIKRYLVCHEIVVLVVCIVSF 540
F+A++FF ++ L L+S F +E V+T++ D FP KR EI VL + IV F
Sbjct: 341 GSTFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHVIGKR----REIFVLGLVIVCF 396
Query: 541 FFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
L +T GG Y +L++ Y AV+ V E +AV+W YG + ++ M G P
Sbjct: 397 LGSLATLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYGITQFCSDIKEMLGFTPG 456
Query: 601 LYFRFCWSIAAPLLILIRI 619
++R CW +PL +L I
Sbjct: 457 WFWRVCWVAISPLFLLFII 475
Score = 40.2 bits (94), Expect = 0.003
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R+ W K+ F+L+ +G+++ +GN+WRFP+
Sbjct: 1 RETWGKKMDFLLSVIGFAVDLGNVWRFPY 29
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 292 bits (748), Expect = 4e-91
Identities = 173/554 (31%), Positives = 269/554 (48%), Gaps = 118/554 (21%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PYFI LF G+P+ ++E+A+GQ+T G I KLCP F G G +S++I ++ YY
Sbjct: 39 FLIPYFIFLFGGGLPVFFLEVALGQYTSEGGITCWEKLCPIFTGIGYASIVIVSLLNIYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
V+ L W G L Q+ +P
Sbjct: 99 IVI---------------LAW-----------------------GLYYLFQSFQSELP-- 118
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
+ C+ ++ + V T + + + W S + ++ + W
Sbjct: 119 ------------WAHCNQSWNTPNCVEDTLR-KNKTLWAS-----INATNFTSPVTEFWE 160
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
VL +SSGI+ +G +W+L C + W++ +F +WK V+S+G+V+YFTAT PFL++
Sbjct: 161 --RNVLSLSSGIEHVGTIKWDLALCLLLVWVICFFCIWKGVKSTGKVVYFTATFPFLMLI 218
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
V L +TL G+ G++++ P+ L D +VW++AG QIF S I GA+ + SYNKY
Sbjct: 219 VLLIRGVTLPGAAEGIKFYLYPDITRLGDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKY 278
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQI 421
YN Y
Sbjct: 279 K---------------------------------------------------YNCYR--- 284
Query: 422 IVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
D M++ +N+ TS + G IF +G + E I +V GPGL F+ YP+A+ +P
Sbjct: 285 --DCMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMP 342
Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFF 541
P FWA+LFF LL L L+SQF VE +TS+ D +P ++++ EI + +VC +S+
Sbjct: 343 LPTFWAILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYR-REIFIAIVCFISYL 401
Query: 542 FGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPS 600
GL VT+GG+Y FQL D+Y AS +++VAFFE +AVAW+YG+D + M G P
Sbjct: 402 LGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWVYGADNFYDAIEDMIGYRPG 461
Query: 601 LYFRFCWSIAAPLL 614
+ ++ W + P+L
Sbjct: 462 PWMKWSWIVITPVL 475
Score = 40.6 bits (95), Expect = 0.002
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R+ W SK+ F+L+ G +G+GN+WRFP+
Sbjct: 1 REKWASKIDFVLSVAGGFVGLGNVWRFPY 29
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 292 bits (749), Expect = 5e-91
Identities = 123/375 (32%), Positives = 207/375 (55%), Gaps = 16/375 (4%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
L IS ID+ G W + C ++WI+VY + K ++SSG+V+YFTAT P++++ +FL
Sbjct: 148 TTLDISPSIDESGGLNWWMTLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIFL 207
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
LTL G+ GL++ F P FE L D +VW++A QIF S+G+ +G++I FSSYN N
Sbjct: 208 IRGLTLKGAGDGLKHMFTPKFEKLLDPQVWLDAATQIFFSLGLGFGSLIAFSSYNPPKNN 267
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVD 424
D ++VS+IN TS+ + +F +G ++ T + + + + D
Sbjct: 268 CHRDAVLVSLINCFTSIFASIVVFSVLG---FKATTRYDRCVDSNILILVINFLLNSTED 324
Query: 425 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPN 484
+ ++ + +T ++ E + ++E G GL F+V+ +A+ K P
Sbjct: 325 YVDNYTAINNVTLTENQTLGLTNCSLEDELDEAVE-----GTGLAFIVFTEAIVKFPGAP 379
Query: 485 FWAVLFFFSLLCLALNSQFALVEVVVTSIQD--GFPRWIKRYLVCHEIVVLVVCIVSFFF 542
FW+VLFF LL L L S F +E V+T + D P+ K E + +VC+V F
Sbjct: 380 FWSVLFFLMLLTLGLGSMFGTLEGVLTPLFDSKILPKVPK------EYLTGLVCLVCFLI 433
Query: 543 GLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLY 602
GL + + G Y+ Q+ D Y+ + ++ +A FE++AV+++YG D+ ++ +MTGK P Y
Sbjct: 434 GLIFTQRSGNYWVQMFDSYSGTLPLLIIALFEMIAVSYVYGLDRFEDDIEYMTGKRPGWY 493
Query: 603 FRFCWSIAAPLLILI 617
++ W +PL +L+
Sbjct: 494 WKITWRYVSPLAMLV 508
Score = 118 bits (299), Expect = 4e-28
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY I+L L GIP+ ++ELA+GQ R+G IGV + + P+ G GI+S ++SF ++ YY
Sbjct: 39 FLIPYVIMLVLEGIPLFFLELAIGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
NV+IA+ +Y SF+ LPW C
Sbjct: 99 NVIIAWCFFYLFNSFQYPLPWSSC 122
Score = 55.7 bits (135), Expect = 4e-08
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W +K+QF+LA +GY++G+GN+WRFP+
Sbjct: 1 RPAWDNKLQFLLATIGYAVGLGNVWRFPY 29
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 258 bits (662), Expect = 2e-78
Identities = 120/348 (34%), Positives = 181/348 (52%), Gaps = 60/348 (17%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY ++L G+P+ YMELA+GQ+ R G I V K+CP FKG G + II+F+++ YY
Sbjct: 39 FLIPYLLMLIFGGLPLFYMELALGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
N +IA++LYY +SF S+LPW C N WNT +C +
Sbjct: 99 NTIIAWALYYLFSSFTSELPWTSCNNPWNTPNCTDVSNRNNSSSSNGT--------WTLH 150
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
+P+EEF+ RK + S GI +L
Sbjct: 151 SPAEEFFE------------------------RKVLE-----------LQKSEGIDDL-- 173
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
G +W+L C F +I+VYF+LWK V+SSG+V++ TAT+P++++
Sbjct: 174 ---------------GGPKWQLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMPYVVLS 218
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
+ L LTL G+ G++Y+ PN+ L D KVW++A QIF S+G +G ++ SSYNK+
Sbjct: 219 ILLIRGLTLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFSLGPGFGVLLALSSYNKF 278
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
+N D ++ S IN +TS G IF +G + ++ IE V +G
Sbjct: 279 HNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEG 326
Score = 201 bits (514), Expect = 3e-57
Identities = 86/206 (41%), Positives = 125/206 (60%), Gaps = 3/206 (1%)
Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
SSYNK++N D ++ S IN +TS G IF +G + ++ IE V +GPGL+F+
Sbjct: 273 SSYNKFHNNCYRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEGPGLVFI 332
Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
VYP+A+A LP FWA++FF L+ L L+S F +E V+T + D FP + + E+
Sbjct: 333 VYPEAIATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPVLGKR---RELF 389
Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
VL V I+ F LP VT GGIY L+D Y A T++++V F E VAV+W YG D+ + ++
Sbjct: 390 VLGVVIICFLLALPTVTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYGVDRFSDDI 449
Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
M G P LY+R CW +P+ +L
Sbjct: 450 EEMLGFRPGLYWRVCWKFISPIFLLF 475
Score = 41.5 bits (98), Expect = 0.001
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R+ W K F+L+ +G+++ +GN+WRFP+
Sbjct: 1 RETWGKKADFLLSVIGFAVDLGNVWRFPY 29
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 256 bits (655), Expect = 2e-77
Identities = 128/349 (36%), Positives = 196/349 (56%), Gaps = 60/349 (17%)
Query: 61 VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
FL+PYFI+L CGIP+ +MEL++GQ+ GP+ V K CP FKG G +++S + Y
Sbjct: 38 AFLIPYFIMLAFCGIPLFFMELSLGQYGSLGPLTVW-KCCPIFKGIGYGMLLVSGLVCIY 96
Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
YNV+IA++L+Y SF S LPW+HCGN WNT+ C +L NL++ V
Sbjct: 97 YNVIIAWTLFYLFASFTSVLPWEHCGNWWNTESC----LEHRVKDNMGALPVNLTRTV-- 150
Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
+PSEE+ W +V I
Sbjct: 151 -SPSEEY-------------------------------WNRRVLGI-------------- 164
Query: 241 RFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLI 300
Q SSGI G+ RWEL C ++W++V+F L+K V+SSG+V+YFTAT P++++
Sbjct: 165 -------QGSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYIIL 217
Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
V L +TL+G+ G++++ P+F L+ +VW +A +QIF S+GI +G ++T +SYNK
Sbjct: 218 IVLLVRGVTLEGALKGIQFYLTPDFHRLASSQVWYDAASQIFYSLGIGFGGLLTMASYNK 277
Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
+NN I DT+++++ N ITSV G IF +G++ +E +++V G
Sbjct: 278 FNNNIYRDTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAG 326
Score = 194 bits (496), Expect = 1e-54
Identities = 85/206 (41%), Positives = 134/206 (65%), Gaps = 3/206 (1%)
Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
++SYNK+NN I DT+++++ N ITSV G IF +G++ +E +++V GPGL F
Sbjct: 272 MASYNKFNNNIYRDTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAGPGLAF 331
Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
V YP+AL LP FW++LFFF LL L L+SQFA++E +VT++ D FP +++Y
Sbjct: 332 VAYPEALTLLPVSPFWSILFFFMLLTLGLDSQFAMLETIVTAVTDEFPYLLRKY---KTW 388
Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
+ ++C+ + GL VT GG+Y+ L+D Y+AS +M +A F +A++W+YG + R+
Sbjct: 389 FLGLICVGMYLLGLLLVTDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYGIQRFCRD 448
Query: 591 VHHMTGKFPSLYFRFCWSIAAPLLIL 616
+ M G P+LYF+ CW +P L+L
Sbjct: 449 IKMMIGFEPNLYFKACWMFISPALLL 474
Score = 48.6 bits (116), Expect = 7e-06
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W K++F+L+C+GY +G+GN+WRFP+
Sbjct: 1 RGQWGGKLEFLLSCIGYCVGLGNVWRFPY 29
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 245 bits (628), Expect = 1e-73
Identities = 123/351 (35%), Positives = 190/351 (54%), Gaps = 50/351 (14%)
Query: 61 VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
FL+PY I+L + GIP+ YMELA+GQ+ R+G I ++CP FKG G + V+I+F++ +
Sbjct: 38 AFLIPYGIMLVVGGIPLFYMELALGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFF 97
Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPS 180
YNV+IA+SLYYF SF LPW C N WNT +C+
Sbjct: 98 YNVIIAWSLYYFFASFTFNLPWTSCNNSWNTPNCY------------------------- 132
Query: 181 KTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLW 240
E + D C S + S S + F A + Y
Sbjct: 133 -----EPHWSEDGTVPCRSANQSFSATNISAAEEN---------FTSAALEY-------- 170
Query: 241 RFPHKVLQI--SSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFL 298
F VL++ S G+ +G+ RW+++ C F +++ YF+LWK + +SG+V++FTA P++
Sbjct: 171 -FERGVLELHVSRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIHTSGKVVWFTALFPYV 229
Query: 299 LIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSY 358
++F+ L +TL GS+ G+ Y+ PNFE L +VWV+A Q+F S+G +G ++ ++SY
Sbjct: 230 VLFILLIRGVTLPGSQNGIEYYLRPNFEALKSAEVWVDAATQVFFSLGPGFGVLLAYASY 289
Query: 359 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
NK++N + D +V S IN +TS L G IF +G + IE+V +G
Sbjct: 290 NKFHNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEG 340
Score = 179 bits (455), Expect = 6e-49
Identities = 89/211 (42%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
+SYNK++N + D +V S IN +TS L G IF +G + IE+V +GPGL+FV
Sbjct: 287 ASYNKFHNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVFV 346
Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
VYP+AL+ +P FW++LFF L+ L L+S F E ++T++ D FP IKR+ E+
Sbjct: 347 VYPEALSTMPGSTFWSLLFFLMLMTLGLDSSFGGSEAIITALSDEFPI-IKRH---RELF 402
Query: 532 VLVVCIVSFFF--GLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLAR 589
V C+ +F+F GL TQGGIYFF L+D Y A +++ FE VAV+WIYG D+ +
Sbjct: 403 VG--CLFAFYFVIGLAMCTQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQ 460
Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLILIRIS 620
++ M G P +Y++ CW AP+ +L I+
Sbjct: 461 DIKEMLGFRPGIYWKICWKFIAPIFLLFNIT 491
Score = 39.4 bits (92), Expect = 0.005
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R+ W+ KV F+L+ +G+++ + N+WRFP+
Sbjct: 1 RETWSKKVDFLLSVIGFAVDLANVWRFPY 29
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 245 bits (626), Expect = 3e-73
Identities = 130/369 (35%), Positives = 200/369 (54%), Gaps = 58/369 (15%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
+VL+IS GI+ +G RWEL C ++W++ YF +WK V+S+G+V+YFTAT P+L++ V L
Sbjct: 159 RVLRISDGIEHIGSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLL 218
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
+TL G+ +G++++ P+ L+D +VW++AG QI F SY
Sbjct: 219 IRGVTLPGASLGIQFYLYPDLSRLADPQVWMDAGTQI-------------FFSYA----- 260
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVD 424
I +G +T + SYNKYNN D
Sbjct: 261 ------------------------ICLGCLTA--------------LGSYNKYNNNCYRD 282
Query: 425 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPN 484
+ + +N+ TS + G IF +G + YE I V GPGL F+ YP+A++ +PF
Sbjct: 283 CIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESGPGLAFIAYPRAVSMMPFSP 342
Query: 485 FWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGL 544
WA FF ++ L L+SQF VE +VT++ D +P ++ E+++L V IVSF GL
Sbjct: 343 LWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVFRKKNR-RELLILFVSIVSFLVGL 401
Query: 545 PYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYF 603
+T+GG+Y FQL D+Y AS +++VA FE + +AW+YG+D+ N+ M G P Y
Sbjct: 402 IMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWVYGADRFYDNIEDMIGYRPGPYI 461
Query: 604 RFCWSIAAP 612
++CW P
Sbjct: 462 KYCWLFITP 470
Score = 207 bits (527), Expect = 4e-59
Identities = 109/348 (31%), Positives = 176/348 (50%), Gaps = 63/348 (18%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
F +PY I LF CGIP+ ++E A+GQ+T +G + K+CP F+G G +S +I ++ YY
Sbjct: 39 FFIPYLIFLFTCGIPVFFLETALGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
+++A++L+Y SF +LPW C + WNT++C
Sbjct: 99 IIVLAWALFYLFNSFTWELPWSSCNHTWNTENCV-------------------------- 132
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
EF + ++ + ++ S V + W +V + S GI ++
Sbjct: 133 ----EFQKRNYSVNV--TLENATSPV--------IEFWERRV------LRISDGIEHI-- 170
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
G RWEL C ++W++ YF +WK V+S+G+V+YFTAT P+L++
Sbjct: 171 ---------------GSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLV 215
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
V L +TL G+ +G++++ P+ L+D +VW++AG QIF S I G + SYNKY
Sbjct: 216 VLLIRGVTLPGASLGIQFYLYPDLSRLADPQVWMDAGTQIFFSYAICLGCLTALGSYNKY 275
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
NN D + + +N+ TS + G IF +G + YE I V G
Sbjct: 276 NNNCYRDCIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESG 323
Score = 42.1 bits (99), Expect = 7e-04
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W +K++F+L+ G IG+GN+WRFP+
Sbjct: 1 RGQWNNKLEFVLSVAGEIIGLGNVWRFPY 29
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 231 bits (591), Expect = 8e-68
Identities = 126/369 (34%), Positives = 204/369 (55%), Gaps = 60/369 (16%)
Query: 248 QISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFS 307
Q++ G+++ G RW L ++W+LVYF +WK V +G+V+YF+AT P++++F+
Sbjct: 198 QMTDGLEKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLFILFFRG 257
Query: 308 LTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIV 367
+TL G++ G+ ++ PNF LSD +VW++A QIF S YG
Sbjct: 258 VTLPGAKEGILFYITPNFSKLSDSEVWLDAATQIFFS----YG----------------- 296
Query: 368 DTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMV 427
+G+ I +G SYN ++N + D+++
Sbjct: 297 ---------------LGLGSLIALG--------------------SYNPFHNNVYRDSII 321
Query: 428 VSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWA 487
V IN+ TS+ G IF +G + + + I +V GPGL F+ YP+A+ +LP WA
Sbjct: 322 VCCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGPGLAFLAYPEAVTQLPISPLWA 381
Query: 488 VLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYV 547
VLFF LL L ++SQF VE +T++ D FPR ++ EI + VVCIVS+ GL +
Sbjct: 382 VLFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRNR---REIFIAVVCIVSYLIGLSNI 438
Query: 548 TQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFC 606
TQGGIY F+L D+Y+AS +++++ FFE V+++W YG ++ N+ M G P ++++ C
Sbjct: 439 TQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIEEMVGYRPCIWWKLC 498
Query: 607 WSIAAPLLI 615
WS P+++
Sbjct: 499 WSFFTPIIV 507
Score = 103 bits (257), Expect = 6e-23
Identities = 42/94 (44%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PYF+ L G+P+ +E ++GQ+T G +GV KL P FKG G+++ ++SF+++ YY
Sbjct: 81 FLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYY 139
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCW 155
V+IA+++YY SF + LPW+ C N WNT C+
Sbjct: 140 IVIIAWAIYYLYNSFTTTLPWKSCDNPWNTDRCF 173
Score = 48.1 bits (114), Expect = 1e-05
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
RD W K F+++CVGY+IG+GN+WRFP+
Sbjct: 43 RDTWKGKFDFLMSCVGYAIGLGNVWRFPY 71
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 220 bits (562), Expect = 2e-63
Identities = 124/348 (35%), Positives = 192/348 (55%), Gaps = 34/348 (9%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY ++L L GIPI ++E+++GQF +GP+ V K P +G GI+ +IIS ++ YY
Sbjct: 39 FLIPYLMMLALAGIPIFFLEVSLGQFASQGPVSVW-KAIPALQGCGIAMLIISVLIAIYY 97
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
N+++ Y+L+Y S LPW C N WNT C L L + S
Sbjct: 98 NIIMCYTLFYLFASLVEVLPWASCNNPWNTPECKDKDKLL------------LDSCIISD 145
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
P + N + C + +++ V T K F+ Y
Sbjct: 146 HPKIQIKN----STFCMTAYPNLTMVNFTSVGNK--------TFVSGSEEY--------- 184
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
F + VL+IS+GI+ G+ RW L C F++W++VY +L K ++SSG+V+YFTAT P++++
Sbjct: 185 FKYNVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAKGIKSSGKVVYFTATFPYVVLV 244
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
+ L +TL G+ G+ YF P +E L+D VW +A QIF S+ A+G +IT SSYNK+
Sbjct: 245 ILLIRGVTLPGAGAGIWYFITPKWEKLNDATVWKDAATQIFFSLSAAWGGLITLSSYNKF 304
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
+N DT++V+ N+ TS+ G IF IG + +E + +IE+V G
Sbjct: 305 HNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQG 352
Score = 182 bits (462), Expect = 1e-49
Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 5/206 (2%)
Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
+SSYNK++N DT++V+ N+ TS+ G IF IG + +E + +IE+V GPG+ F
Sbjct: 298 LSSYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQGPGIAF 357
Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
VVYP+AL +LP FWA++FF LL L L++ FA +E +VTS+ D FP +YL H+
Sbjct: 358 VVYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFP----KYLRTHKP 413
Query: 531 VVLVVCIVSFF-FGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLAR 589
+ +VC +SFF G P +TQGG+Y QL+D Y AS +++ +A FE+V +++IYG +
Sbjct: 414 LFTLVCCISFFIMGFPMITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYIYGLQRFCE 473
Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLI 615
++ M G P+ ++R CW+ P ++
Sbjct: 474 DIEMMIGFQPNKFWRVCWAFVTPTIL 499
Score = 47.3 bits (112), Expect = 2e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
R +W++K+ FIL+ VGY++G+GN+WRFP+ Q G
Sbjct: 1 RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGG 37
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 218 bits (557), Expect = 5e-63
Identities = 122/378 (32%), Positives = 203/378 (53%), Gaps = 17/378 (4%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
+ L I+ I+ G +W L+ C W +VY + + + ++G+V+YFTA P+L++ +FL
Sbjct: 149 QTLNITPDINDSGSIQWWLLLCLAACWAIVYLCVIRGIETTGKVIYFTALFPYLVLTIFL 208
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
LTL G+ GL Y F PN +L + +VW++A QIF S+ +A+G I F+SYN N
Sbjct: 209 IRGLTLPGATEGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRND 268
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG-NITYEHETSIENVILDGFISSYNKYNNQIIV 423
D + ++++N++TS+ + +F +G T ++E ++ IL I+ ++ I
Sbjct: 269 CEKDAVTIALVNSMTSLYASIPVFSVLGFKATNDYEHCLDRNILS-LINEFDFPEQSISR 327
Query: 424 D--TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLP 481
D V+ +N + + + GPGL F+V+ +A+ +P
Sbjct: 328 DNYPSVLMHLNATWPERVAQL------PLKACLLEDFLDKSASGPGLAFIVFTEAVLHMP 381
Query: 482 FPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDG--FPRWIKRYLVCHEIVVLVVCIVS 539
WAVLFF L L L+S F VE V+T + D PRW+ + E + +VC+V
Sbjct: 382 GAQVWAVLFFGMLFTLGLSSMFGNVEGVITPLLDVGVLPRWVPK-----EALTGLVCLVC 436
Query: 540 FFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
F L + Q G Y+ ++ D + AS ++ +AFFEVV V ++YG + ++ MTG+ P
Sbjct: 437 FLSALCFTLQSGNYWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKRFCDDIEWMTGRRP 496
Query: 600 SLYFRFCWSIAAPLLILI 617
SLY+R W + +PLL+L
Sbjct: 497 SLYWRLTWRVVSPLLLLT 514
Score = 94.1 bits (234), Expect = 4e-20
Identities = 40/84 (47%), Positives = 57/84 (67%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PYFI L GIP+ ++ELA+GQ R+G IGV + + P+ G G+ V +SF +S YY
Sbjct: 40 FLIPYFIALVFEGIPLFHLELAIGQRLRKGSIGVWTTISPYLGGVGLGCVTVSFLVSLYY 99
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
N ++A+ L+YF SF+ LPW C
Sbjct: 100 NTILAWVLWYFLNSFQHPLPWSSC 123
Score = 47.1 bits (112), Expect = 3e-05
Identities = 14/29 (48%), Positives = 25/29 (86%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W +K Q++L+C+G+++G+GN+WRFP+
Sbjct: 2 RPKWDNKAQYLLSCIGFAVGLGNIWRFPY 30
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 215 bits (549), Expect = 2e-62
Identities = 91/206 (44%), Positives = 128/206 (62%), Gaps = 5/206 (2%)
Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
+SYNK++N D ++VS IN+ TS L G IF +G + E I V GPGL F+
Sbjct: 255 ASYNKFHNNCYRDALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPGLAFI 314
Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPR-WIKRYLVCHEI 530
YP+A+ LP FW+VLFF L+ L L+SQF VE ++T++ D FP KR E+
Sbjct: 315 AYPEAVTMLPLSPFWSVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKR----REL 370
Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
L+VC++SF GL VT+GGIY F L D+Y AS +++V FFE +AVAW+YG D+ +
Sbjct: 371 FTLIVCVISFLIGLILVTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDRFYDD 430
Query: 591 VHHMTGKFPSLYFRFCWSIAAPLLIL 616
+ M G P L++R CW +PL++L
Sbjct: 431 IKEMLGFRPGLFWRLCWKFVSPLILL 456
Score = 171 bits (435), Expect = 2e-46
Identities = 71/165 (43%), Positives = 107/165 (64%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
KVL++S GI+ +G RW L C V+W++VYF +WK V+SSG+V+YFTAT P++++ V L
Sbjct: 144 KVLKLSDGIEDLGGLRWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVLL 203
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
+TL G+ G+ ++ P++ L D +VW++A QIF S+GI +G +I F+SYNK++N
Sbjct: 204 VRGVTLPGAADGIDFYLTPDWSKLLDPQVWIDAATQIFFSLGIGFGGLIAFASYNKFHNN 263
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
D ++VS IN+ TS L G IF +G + E I V G
Sbjct: 264 CYRDALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESG 308
Score = 137 bits (347), Expect = 1e-34
Identities = 50/94 (53%), Positives = 68/94 (72%)
Query: 61 VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTY 120
FL+PY I L GIP+ ++ELA+GQ+TR G IGV K+CP FKG G +S++I F++ Y
Sbjct: 38 AFLIPYLIFLITAGIPLFFLELALGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIY 97
Query: 121 YNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHC 154
YNV+IA++LYY +SF ++LPW C N WNT C
Sbjct: 98 YNVIIAWALYYLFSSFTTELPWASCNNSWNTPRC 131
Score = 52.7 bits (127), Expect = 4e-07
Identities = 13/29 (44%), Positives = 25/29 (86%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R+ W+ K+ F+L+ +G+++G+GN+WRFP+
Sbjct: 1 RETWSGKLDFLLSVIGFAVGLGNVWRFPY 29
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 215 bits (549), Expect = 4e-62
Identities = 124/348 (35%), Positives = 192/348 (55%), Gaps = 58/348 (16%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY + L + G+P+ YMELA+GQ+ R G V K+CP FKG G + ++I+ ++ YY
Sbjct: 39 FLIPYTLFLIIAGMPLFYMELALGQYNREGAATVW-KICPCFKGVGYAVILIALYVGFYY 97
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
NV+IA+SLYY +SF S+LPW CGN WN+ +C P L S+L N +K
Sbjct: 98 NVIIAWSLYYLFSSFTSELPWTTCGNVWNSPNCTDPKLLNA------SVLGNGTK----- 146
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
SK + A Y G+ +L
Sbjct: 147 --------------------------------------YSKYKLTPAAEFYERGVLHL-- 166
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
H+ S+GI +G RW+L C FV I+++F+LWK V++SG+V++ TAT+P++++F
Sbjct: 167 --HE----SAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITATLPYVVLF 220
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
V L +TL G+ G+ + +F+ L + VW++A QIF S+G +G +I F+SYNK+
Sbjct: 221 VLLIHGVTLPGAFNGINAYLHIDFKRLKEATVWIDAATQIFYSLGAGFGVLIAFASYNKF 280
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
+N D ++ S IN +TS + G IF +G + +EH+ IE+V +G
Sbjct: 281 DNNCYRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEG 328
Score = 150 bits (380), Expect = 9e-39
Identities = 72/205 (35%), Positives = 120/205 (58%), Gaps = 4/205 (1%)
Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
+SYNK++N D ++ S IN +TS + G IF +G + +EH+ IE+V +G GL+F+
Sbjct: 275 ASYNKFDNNCYRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFI 334
Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
+YP+A++ L FWAV+FF LL L ++S +E V+T + D F +K++ ++
Sbjct: 335 LYPEAISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDF-SILKKH---RKLF 390
Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
V ++F L +T GGIY L+D + A T++++ E + V+W YG D+ + ++
Sbjct: 391 TFGVAFITFLLALFCITNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSDDI 450
Query: 592 HHMTGKFPSLYFRFCWSIAAPLLIL 616
M G P LY+R CW +P +L
Sbjct: 451 QQMMGFRPGLYWRLCWKFVSPAFLL 475
Score = 39.9 bits (93), Expect = 0.003
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R+ W K+ F+L+ VG+++ + N+WRFP+
Sbjct: 1 RETWGKKIDFLLSVVGFAVDLANVWRFPY 29
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 215 bits (549), Expect = 5e-62
Identities = 113/382 (29%), Positives = 206/382 (53%), Gaps = 25/382 (6%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
+ L IS I++ G +WE C ++W++VY + + S+G+V+Y TAT+P+L++ ++L
Sbjct: 151 ETLNISPSIEESGGIQWEQALCLILAWLVVYLCILRGTESTGKVVYVTATLPYLVLIIYL 210
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
LTL G+ GL+Y F P E L++ K W+NA QIF S+G+ +G++I F+SYN+ +N
Sbjct: 211 IRGLTLHGAANGLKYMFTPKLEQLANPKTWINAATQIFFSLGLGFGSLIAFASYNEPSNN 270
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG-NITYEHETSIENVIL---------DGFISSY 414
++VS+IN+ TS+ + F G T+ +E ++ VIL +G I+
Sbjct: 271 CERHAIIVSLINSGTSIFASIVTFSIYGFKATFNYENCLKKVILLLTNTFDLEEGSITMS 330
Query: 415 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
N ++ M + + + ++ E +T+++ G GL F+VY
Sbjct: 331 N-------LEDMKKYLNAAYPQEYAQIAPQLKNCSLEKELDTAVQ-----GTGLAFIVYS 378
Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV 534
+A+ + W+VL+FF LL L + S ++T + D + I +L E + +
Sbjct: 379 EAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDS--KIISSHL-PKEAISGL 435
Query: 535 VCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHM 594
VC ++ GL + + G Y+F + + Y A+ +++ + E +AV ++YG + +++ M
Sbjct: 436 VCFINCIIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRRFEKDLEAM 495
Query: 595 TGKFPSLYFRFCWSIAAPLLIL 616
TG PS Y++ W+ +PLLI+
Sbjct: 496 TGHKPSWYWKIMWAFTSPLLII 517
Score = 99.5 bits (248), Expect = 7e-22
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY I+L L G+P+LY+ELAVGQ R+G IG + P+ G G++SV++SFF+S YY
Sbjct: 42 FLIPYLIMLILEGMPLLYLELAVGQRMRQGSIGAWKSISPYLGGVGVASVVVSFFLSMYY 101
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
NV+ A++ +Y SF+ LPW C
Sbjct: 102 NVINAWAFWYLFHSFQDPLPWSVC 125
Score = 46.0 bits (109), Expect = 5e-05
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W + +QF+ AC+ Y++G+GN+WRFP+
Sbjct: 4 RPLWDNPLQFVFACISYAVGLGNVWRFPY 32
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 213 bits (545), Expect = 3e-61
Identities = 116/351 (33%), Positives = 186/351 (52%), Gaps = 43/351 (12%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY I+L L G+P+ ++E ++GQF GPI V + P +G GI+ V++S F+S YY
Sbjct: 39 FLIPYTIMLALAGLPLFFLECSLGQFASLGPISVW-RAVPLLQGVGITMVLVSTFVSIYY 97
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
NV+IAYSLYY SF+S LPW C + W ++C + S + + + + +
Sbjct: 98 NVIIAYSLYYMFASFQSPLPWSDCSS-WADENC------------STSPITHCNVSLANN 144
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
E + TC + S P ++ +W KV
Sbjct: 145 GIHENKSWVDSNNLTCINISIIYQPGQL---PSEQ-YW-DKV------------------ 181
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
LQ SSG+D+ G W L C ++WI+V AL+K ++SSG+V+YFTA P++++
Sbjct: 182 ----ALQRSSGMDETGPIVWYLALCLLLAWIIVGAALFKGIKSSGKVVYFTALFPYVVLL 237
Query: 302 VFLCFSLTLDGSEIGLRYFF--LPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYN 359
+ L TL+G++ G+ Y+ N L + +VW +A QIF S+ +A+G ++ SSYN
Sbjct: 238 ILLVRGATLEGAKDGIEYYIGSQSNLTKLMEAEVWKDAATQIFYSLSVAWGGLVALSSYN 297
Query: 360 KYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGF 410
K++N D +VV + N +TSV G IF +G++ + + + V+ GF
Sbjct: 298 KFHNNCFSDAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGF 348
Score = 181 bits (460), Expect = 2e-49
Identities = 84/210 (40%), Positives = 127/210 (60%), Gaps = 6/210 (2%)
Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
+SSYNK++N D +VV + N +TSV G IF +G++ + + + V+ G L F
Sbjct: 293 LSSYNKFHNNCFSDAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGFDLAF 352
Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
+ YP+ALAKLP W++LFFF LL L L+SQFA +E + T+IQD FP+ +K+
Sbjct: 353 IAYPEALAKLPISPLWSILFFFMLLTLGLDSQFAGIETITTTIQDAFPKVMKKK---RIP 409
Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
+ L VCI+ F GLP VTQ GIY+ LIDH+ A +++ A E++ + WIYG ++ +
Sbjct: 410 ITLGVCIILFLLGLPCVTQAGIYWVNLIDHFCAGWGILFAAVLELIGIIWIYGGNRFIED 469
Query: 591 VHHMTGKFPS---LYFRFCWSIAAPLLILI 617
+ M GK L++R CW P+L++
Sbjct: 470 IEMMIGKKSWIFWLWWRACWFFITPVLLIA 499
Score = 46.0 bits (109), Expect = 5e-05
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R +W+ K ++L+ +GY++G+GN+WRFP+
Sbjct: 1 RGNWSKKSDYLLSMIGYAVGLGNVWRFPY 29
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 209 bits (534), Expect = 8e-60
Identities = 121/382 (31%), Positives = 205/382 (53%), Gaps = 23/382 (6%)
Query: 247 LQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCF 306
L ISS I + G W++ C +W++V A+ K ++SSG+++YF++ P++++ FL
Sbjct: 152 LNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLIR 211
Query: 307 SLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQII 366
+L L+GS G+R+ F P E++ + KVW A Q+F ++G+ +G VI FSSYNK +N
Sbjct: 212 ALLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCH 271
Query: 367 VDTMVVSIINTITSVLIGVFIFITIG---NITYEHETSIENVILDGFISSYNKYNNQIIV 423
D ++VS IN TSVL + +F +G N+ E + + + N + II
Sbjct: 272 FDAVLVSFINFFTSVLATLVVFAVLGFKANVINEKCIIQNSEKIIKLLKMGN-LSQDIIP 330
Query: 424 DTMVVSII-----NTITSVLIGV----FIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
+ S I N + ++ V F + + + E E N + G GL F+ +
Sbjct: 331 HHINFSSITAEDYNLVYDIIQKVKEEEFPALGLKSCQIEDEL---NKAVQGTGLAFIAFT 387
Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV 534
+A+ P FW+V+FF L+ L L S F +E ++T I D F V EI+ ++
Sbjct: 388 EAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTFK-------VRKEILTVI 440
Query: 535 VCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHM 594
C+++F GL +V + G YF + D Y+A+ ++ V E +AV+++YG DK ++ M
Sbjct: 441 CCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFMEDLKDM 500
Query: 595 TGKFPSLYFRFCWSIAAPLLIL 616
G P+ Y+ + W +PL++L
Sbjct: 501 LGFTPNRYYYYMWKYISPLVLL 522
Score = 103 bits (257), Expect = 6e-23
Identities = 47/97 (48%), Positives = 65/97 (67%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
+LVPY I+L + GIP+ ++EL+VGQ RRG IGV + + P G G +S I+ FF++ YY
Sbjct: 39 YLVPYLILLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCFFVALYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPP 158
NV+I +SL+YFS SF+ LPW C N H +V P
Sbjct: 99 NVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEP 135
Score = 46.8 bits (111), Expect = 2e-05
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W SK+Q+ILA VG+S+G+GN+WRFP+
Sbjct: 1 RPAWNSKLQYILAQVGFSVGLGNVWRFPY 29
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 199 bits (508), Expect = 3e-56
Identities = 112/338 (33%), Positives = 172/338 (50%), Gaps = 62/338 (18%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
F+ PYFI+L CGIP+ +MEL+ GQF +G +GV ++ P FKG G +++S ++ YY
Sbjct: 55 FMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVW-RVSPMFKGVGYGMMVVSTYIGIYY 113
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHC---WVPPTLTGEDLGAVSLLQNLSKPV 178
NV+I + YYF S LPW +C N WNT C +++ NL++ +
Sbjct: 114 NVVICIAFYYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTNRSNATFANMSAVVSNLTELL 173
Query: 179 ----PSKTPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSI 234
+PSEE+
Sbjct: 174 NRTLKRTSPSEEY----------------------------------------------- 186
Query: 235 GIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTAT 294
WR VL IS I G+ R L+ C VSW++V+ L + V+SSG+V+YFTAT
Sbjct: 187 -----WR--RYVLNISDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTAT 239
Query: 295 IPFLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVIT 354
P++++ + +TL+G+ G+ Y+ P ++ + D KVW +A +QIF S+G A+G +IT
Sbjct: 240 FPYVVLTILFIRGITLEGAISGIMYYLTPQWDKILDAKVWGDAASQIFYSLGCAWGGLIT 299
Query: 355 FSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIG 392
+SYNK++N D++++SI N TSV G IF +G
Sbjct: 300 MASYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILG 337
Score = 144 bits (364), Expect = 1e-36
Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 4/213 (1%)
Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
++SYNK++N D++++SI N TSV G IF +G + + V GPGL F
Sbjct: 300 MASYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILGFMANHLGVDVSEVADHGPGLAF 359
Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGF-PRWIKRYLVCHE 529
V YP+AL LP W++LFFF L+ L L +QF L+E +VT++ D WI R
Sbjct: 360 VAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVDEIGNDWIIRN---KT 416
Query: 530 IVVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLAR 589
V L V I+ F G+P TQ GIY+ L+D+Y AS +++ ++ +A+ +IYG +
Sbjct: 417 YVTLGVAIIGFLLGIPLTTQAGIYWLLLMDNYAASFSLVIISCIMCIAIMYIYGHRNYFK 476
Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLILIRISLT 622
++ M G P L+F+ CW +P +I + T
Sbjct: 477 DIEMMLGFPPPLFFQICWRFVSPAIIFFILIFT 509
Score = 44.9 bits (106), Expect = 1e-04
Identities = 15/30 (50%), Positives = 26/30 (86%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPH 244
KR +W ++++F+L VGY++G+GN+WRFP+
Sbjct: 16 KRGNWGNQIEFVLTSVGYAVGLGNVWRFPY 45
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 199 bits (507), Expect = 4e-56
Identities = 116/386 (30%), Positives = 204/386 (52%), Gaps = 33/386 (8%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
+ L S+ ID G +W +V C +W ++Y + + ++G+ +Y T+T+P+L++ +FL
Sbjct: 148 ETLNTSTSIDDSGGIQWWMVLCLACAWGVLYVCTIRGIETTGKAVYVTSTLPYLVLTIFL 207
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
LTL GS G+++ F P+ L++ W++AGAQ+F S +A+G +I+FSSYN +N
Sbjct: 208 IRGLTLKGSVNGIKFLFTPDINELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNN 267
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG-NITYEHETSIENVIL---------DGFISSY 414
D +++S+IN TS+ I+ IG T + + IL +G I+
Sbjct: 268 CEKDAVIISVINGFTSIYAATVIYSIIGFRATERFDDCFDGNILTLINAFDLPEGNITQD 327
Query: 415 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
N + Q +N+ +I T + E ++G GL F+V+
Sbjct: 328 NYQDMQ--------QSLNSTDPDIISSLSLQTCDLNNFLSEG------VEGTGLAFIVFT 373
Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGF---PRWIKRYLVCHEIV 531
+A+ K+P W+VLFF L CL L+S F +E V+ +QD W K EI+
Sbjct: 374 EAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQDLKVIPKSWPK------EII 427
Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
++C+VSF GL +V G Y+ L D + S ++ +AF E+ +V ++YG D+ +++
Sbjct: 428 TGLICLVSFLIGLIFVLGSGNYWLALFDSFAGSIPLLIIAFCEMFSVVYVYGIDRFNKDI 487
Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
M G P+++++ W + +PL++L+
Sbjct: 488 EFMIGHKPNIFWQATWRVISPLIMLV 513
Score = 93.4 bits (232), Expect = 6e-20
Identities = 39/84 (46%), Positives = 59/84 (70%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
F++P+ I+L GIP+L++E A+GQ R+G +GV S + P KG GI+S+ +SF +S YY
Sbjct: 39 FMIPFLILLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHPTLKGVGIASMCVSFLVSLYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
N +IA+ ++YF SF+ LPW C
Sbjct: 99 NTIIAWVMWYFFNSFQEPLPWSQC 122
Score = 43.7 bits (103), Expect = 2e-04
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W +K Q++L CVG+ +G+GN+WRFP+
Sbjct: 1 RPKWDNKAQYMLTCVGFCVGLGNVWRFPY 29
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 195 bits (496), Expect = 1e-54
Identities = 114/348 (32%), Positives = 180/348 (51%), Gaps = 59/348 (16%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FLVPY + + G+P+ YMELA+GQF R G GV K+CP FKG G + ++IS ++ +Y
Sbjct: 39 FLVPYLFFMVIAGMPLFYMELALGQFNREGAAGVW-KICPIFKGVGFTVILISLYVGFFY 97
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
NV+IA++L+Y +SF +LPW HC N WN+ +C G+ G S L + K
Sbjct: 98 NVIIAWALFYLFSSFTGELPWIHCNNSWNSPNCSDAH--PGDSSGDSSGLNDTYK----T 151
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
TP+ E++ + S I D+G PR W+
Sbjct: 152 TPAAEYF---ERGVLHLHESHGIHDLGP---PR-------------------------WQ 180
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
L +C V +L+YF+LWK V++SG+V++ TAT+P++++
Sbjct: 181 ---------------------LTSCLVVVIVLLYFSLWKGVKTSGKVVWITATMPYVVLT 219
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
L +TL G+ G++ + +F L + VW++A QI S+G+ +G +I FSSYNK+
Sbjct: 220 ALLLRGVTLPGAIDGIKAYLSVDFLRLCEASVWIDAATQICFSLGVGFGVLIAFSSYNKF 279
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
N D ++ + IN++TS G +F +G + +H I +V DG
Sbjct: 280 TNNCYRDAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDG 327
Score = 163 bits (413), Expect = 3e-43
Identities = 76/205 (37%), Positives = 122/205 (59%), Gaps = 4/205 (1%)
Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
SSYNK+ N D ++ + IN++TS G +F +G + +H I +V DGPGLIF+
Sbjct: 274 SSYNKFTNNCYRDAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDGPGLIFI 333
Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
+YP+A+A LP + WAV+FF LL L ++S +E V+T + D F +++ R+ E+
Sbjct: 334 IYPEAIATLPLSSVWAVIFFIMLLTLGIDSAMGGMESVITGLIDEF-KFLHRH---RELF 389
Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
L + + +F L VT GGIY F L+DH+ A T++++ E + +AW YG + + ++
Sbjct: 390 TLFIVLSTFLISLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFSDDI 449
Query: 592 HHMTGKFPSLYFRFCWSIAAPLLIL 616
M G+ P LY+R CW +P +L
Sbjct: 450 EEMIGQRPGLYWRLCWKFVSPCFLL 474
Score = 36.8 bits (85), Expect = 0.037
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R+ W K+ F+L+ +G+++ + N+WRFP+
Sbjct: 1 RETWGKKIDFLLSVIGFAVDLANVWRFPY 29
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 194 bits (495), Expect = 1e-54
Identities = 116/373 (31%), Positives = 189/373 (50%), Gaps = 49/373 (13%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
+ L ISS I + G W++ C +W++V A+ K ++SSG+++YF++ P++++ FL
Sbjct: 150 EALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLACFL 209
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
L L+GS G+R+ F P E++ + KVW A Q+F ++G+ +G VI FSSYNK +N
Sbjct: 210 VRGLLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNN 269
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVD 424
D ++VS IN TSVL + +F +G I+ V + F +
Sbjct: 270 CHFDAVLVSFINFFTSVLATLVVFAVLG-------FKIQKVKEEEFSA------------ 310
Query: 425 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPN 484
+ + + E E + + G GL F+ + +A+ P
Sbjct: 311 --------------------LGLDSCLIEDEL---DKAVQGTGLAFIAFTEAMTHFPASP 347
Query: 485 FWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGL 544
FW+V+FF L+ L L S F +E + T I D F V EI+ ++ C+ +F GL
Sbjct: 348 FWSVMFFLMLVNLGLGSMFGTIEGITTPIVDTFK-------VRKEILTVICCLFAFLIGL 400
Query: 545 PYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFR 604
+V + G YF + D Y+A+ ++ V E +AVAWIYG K ++ M G PS Y+
Sbjct: 401 IFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYGIKKFMEDLKDMLGFRPSRYYY 460
Query: 605 FCWSIAAPLLILI 617
+ W +PL +L+
Sbjct: 461 YMWKYISPLCLLV 473
Score = 101 bits (254), Expect = 1e-22
Identities = 46/97 (47%), Positives = 64/97 (65%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
+LVPY I+L + GIP+ ++EL+VGQ RRG IGV + + P G G +S I+ F++ YY
Sbjct: 39 YLVPYLILLIVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCLFVALYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPP 158
NV+I +SL+YFS SF+ LPW C N H +V P
Sbjct: 99 NVIIGWSLFYFSQSFQYPLPWDQCPLVKNASHTFVEP 135
Score = 46.4 bits (110), Expect = 3e-05
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W SK+Q+ILA VG+S+G+GN+WRFP+
Sbjct: 1 RPAWNSKLQYILAQVGFSVGLGNVWRFPY 29
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 192 bits (490), Expect = 2e-53
Identities = 116/390 (29%), Positives = 194/390 (49%), Gaps = 27/390 (6%)
Query: 245 KVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFL 304
+ L IS+ I + G W++ C V+W +V A+ K ++SSG+V+YF++ P++++ FL
Sbjct: 150 EALDISNSISESGGLNWKMTLCLLVAWSIVGLAMIKGIQSSGKVMYFSSLFPYVVLVCFL 209
Query: 305 CFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQ 364
L L G+ G+ + F P + + D +VW A Q+F ++G+ +G VI FSSYNK +N
Sbjct: 210 VRGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNN 269
Query: 365 IIVDTMVVSIINTITSVLIGVFIFITIG---NITYEHETSIEN-----------VILDGF 410
D +VS IN TSVL + +F +G NI E + +EN V+
Sbjct: 270 CHFDAALVSFINFFTSVLATLVVFAVLGFKANIMNE-KCVVENAEKILGYLNTNVLSHDL 328
Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
I + +++ D + I +V F + + E E + + G GL F
Sbjct: 329 IPPHVNFSHLTTKDYA--EMYRVIMTVKEDHFKELGLDACLLEDEL---DKSVQGTGLAF 383
Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
+ + +A+ P FW+V+FF L+ L L S + + T I D F V E+
Sbjct: 384 IAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTFK-------VRKEV 436
Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARN 590
+ CI +F GL +V + G YF + D Y+A+ + V E +AVAWIYG+ K +
Sbjct: 437 FTVGCCIFAFLVGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTKKFMQE 496
Query: 591 VHHMTGKFPSLYFRFCWSIAAPLLILIRIS 620
+ M G P ++ + W +P+ + + ++
Sbjct: 497 LTEMLGFRPYSFYFYTWKYVSPICMAVLMT 526
Score = 99.2 bits (247), Expect = 1e-21
Identities = 42/89 (47%), Positives = 60/89 (67%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
+LVPY ++L + GIP+ ++ELAVGQ RRG IGV + +CP G G +S ++ FF+ YY
Sbjct: 39 YLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWNYICPRLGGIGYASCLVCFFVGLYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWN 150
NV+I +S++YF SF+ LPW C N
Sbjct: 99 NVIIGWSIFYFFKSFQYPLPWSECPIVRN 127
Score = 47.6 bits (113), Expect = 2e-05
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPH 244
R W SK+Q+ILA +GYS+G+GN+WRFP+
Sbjct: 1 RPAWNSKLQYILAQIGYSVGLGNVWRFPY 29
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 187 bits (477), Expect = 2e-52
Identities = 92/379 (24%), Positives = 169/379 (44%), Gaps = 67/379 (17%)
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSS-GRVLYFTATIPFLLI 300
F LQ+S G +G F W ++ + W++++F L++ V+ + + F+L
Sbjct: 125 FFGDFLQLSDGPFDLGGFVWPILIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLF 184
Query: 301 FVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNK 360
+ + +LTL G+ GL F P++ L D KVW+ A QIF S+ + +G +
Sbjct: 185 LILVIRALTLPGAADGLNALFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIM-------- 236
Query: 361 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQ 420
ITY +SY +
Sbjct: 237 ---------------------------------ITY---------------ASYLPKKSD 248
Query: 421 IIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKL 480
+ + ++V+ N+ +L G+ +F +G + + V+ G GL FV +P+A+ +
Sbjct: 249 LTNNALIVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAINLM 308
Query: 481 -PFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVS 539
P + VLFF SL+ L S +LVEVV++++QD F ++ V +VC+V
Sbjct: 309 PPGGALFGVLFFLSLVFAGLTSLISLVEVVISALQDKF-GLSRKK------AVTIVCLVG 361
Query: 540 FFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFP 599
F L + T G+Y ++DH+ + ++ V EV+ V W++G++KL +++ F
Sbjct: 362 FLVSLLFATGAGLYLLDIVDHFINNYGIVLVGLVEVIVVGWVFGAEKLREHLNA-VSDFK 420
Query: 600 -SLYFRFCWSIAAPLLILI 617
++ F + PL++
Sbjct: 421 VGKWWDFLIKVVTPLVLGY 439
Score = 69.8 bits (172), Expect = 1e-12
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY I L GIP+L +E +G R ++ F+ G V+++F ++TYY
Sbjct: 39 FLIPYLIALLTAGIPLLILEYGLGHKFRGSAPLAFRRINKKFEWIGWWQVLVAFVIATYY 98
Query: 122 NVLIAYSLYYFSTSF 136
V+IA++L Y SF
Sbjct: 99 AVIIAWALSYLFFSF 113
Score = 44.8 bits (107), Expect = 1e-04
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFP 243
R+ W S++ FILA +G ++G+GN+WRFP
Sbjct: 1 REQWGSRLGFILAAIGSAVGLGNIWRFP 28
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 180 bits (458), Expect = 2e-49
Identities = 103/348 (29%), Positives = 165/348 (47%), Gaps = 62/348 (17%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY I LF CGIP+ ++E A+GQ+T +G + K+CP F+G G +S +I +++ YY
Sbjct: 40 FLIPYLIFLFTCGIPLFFLETALGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVYY 99
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPVPSK 181
++++++L+Y +SF S LPW C N WN+ C L + +N + PV
Sbjct: 100 IIILSWALFYLFSSFTSVLPWATCNNPWNSDLC--VDFLNHSGADNRTPPENATSPV--- 154
Query: 182 TPSEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWR 241
EF+ +D I +G+ W + +LA W
Sbjct: 155 ---MEFWE-----KRVLGLTDGIHKLGTV-------RWELALCLLLA-----------W- 187
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF 301
+ C F +WK V+S+G+V+YFTAT P+L++
Sbjct: 188 ----------------------IICYF--------CIWKGVKSTGKVVYFTATFPYLMLV 217
Query: 302 VFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKY 361
+ L +TL G+ G+ ++ P+ L+D +VW++AG QI S I G + SYNKY
Sbjct: 218 ILLVRGVTLPGAAEGIIFYLKPDLSRLADPQVWMDAGTQILFSYAICQGCLTALGSYNKY 277
Query: 362 NNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
N D +++ +N+ TS + G IF +G + E I V G
Sbjct: 278 TNNCYRDCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESG 325
Score = 148 bits (376), Expect = 3e-38
Identities = 76/207 (36%), Positives = 118/207 (57%), Gaps = 2/207 (0%)
Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
+ SYNKY N D +++ +N+ TS + G IF +G + E I V GPGL F
Sbjct: 271 LGSYNKYTNNCYRDCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESGPGLAF 330
Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
+ YP A+ +P W+ LFF L+ L L+SQF VE +VT+ D FP ++ E+
Sbjct: 331 IAYPTAVTMMPVSQLWSCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGVFRKKGR-REL 389
Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLAR 589
++L + ++ + GL VT+GG+Y FQL D+Y AS T ++++A FEV+ + W+YG+++
Sbjct: 390 LILAIAVICYLLGLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANRFYD 449
Query: 590 NVHHMTGKFPSLYFRFCWSIAAPLLIL 616
N+ M G P + CW + P L L
Sbjct: 450 NIEDMIGYRPWPLIKICWLVFTPGLCL 476
Score = 41.4 bits (97), Expect = 0.001
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPH 244
+R W +K++F+L+ G IG+GN+WRFP+
Sbjct: 1 ERGQWRNKMEFVLSVAGEIIGLGNVWRFPY 30
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 171 bits (434), Expect = 4e-46
Identities = 93/380 (24%), Positives = 179/380 (47%), Gaps = 26/380 (6%)
Query: 244 HKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVF 303
K L+ S I+ G L FV+W LVY + + ++S+G+ + F +P++++
Sbjct: 145 QKTLKASDRIEDGGSLVGHLALSLFVAWCLVYVTMIRGLKSTGKSIIFLVLLPYVILLCL 204
Query: 304 LCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNN 363
L SL L+G+ GL + + L++ +W AG Q+ S+G+ +G +IT++SY N
Sbjct: 205 LIRSLFLEGAFFGLLWLLVAKVSSLANLSIWRVAGGQVLFSLGLGFGTLITYASYMPRKN 264
Query: 364 QIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIV 423
+ D VV+++N +TS++ F +G + +
Sbjct: 265 NCLTDAFVVALVNLLTSLIATPIFFAVMGF--------------------WATVSTHRCC 304
Query: 424 DTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFP 483
+ V +++ + + + N+ ++GPG F+ + +A++ P
Sbjct: 305 EKNVENLLMLGVLPPEAKPPADLSLDPASIYLLWLFNLPMEGPGFAFLAFSEAISLAPGS 364
Query: 484 NFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV-VCIVSFFF 542
FWA++FF +LL L++ F +++ + T +QD F + K H ++ V VC+ F
Sbjct: 365 AFWAIVFFLALLLAGLSTMFGIMQGIYTPLQDTFSFFRK-----HPKLLTVLVCVGLFLG 419
Query: 543 GLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLY 602
GL + G YF L+D Y ++++ FE +A+AW YG+ + ++ + G S
Sbjct: 420 GLVFTQPSGSYFRSLLDDYLVPLPIIFIVVFENIALAWAYGAKRFLADLEFLLGGPISSI 479
Query: 603 FRFCWSIAAPLLILIRISLT 622
+ WS +P+++L T
Sbjct: 480 VWWLWSYLSPVVLLGLFLWT 499
Score = 99.4 bits (248), Expect = 7e-22
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+ YF++LFL GIP+L++E+AVGQ ++G I V + P+F G G SSV+ F ++ YY
Sbjct: 39 FLIAYFVMLFLVGIPLLFLEMAVGQRLQQGSIRVWKAISPWFGGVGYSSVLACFLVALYY 98
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHC 145
NV+ +++L+Y SF+ LPW+ C
Sbjct: 99 NVVNSWALFYLGHSFQFPLPWEQC 122
Score = 42.8 bits (101), Expect = 4e-04
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSG 252
R W +K ++ILA VG+S+G+GNLWRFP+ L+ G
Sbjct: 1 RPLWRNKTEYILAQVGFSLGLGNLWRFPYLCLRNGGG 37
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 160 bits (407), Expect = 2e-43
Identities = 91/347 (26%), Positives = 157/347 (45%), Gaps = 70/347 (20%)
Query: 261 WELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYF 320
+ + +F W +V+ +++ V S+GRV+Y T +P +LI + L +L + G+R +
Sbjct: 112 FTVGWLAFT-WFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLY 170
Query: 321 FLPNF-ELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTIT 379
F + L+ ++W A Q+F S G+ +G ++Y
Sbjct: 171 FATWRGDKLASGEIWQAAAGQVFFSTGVGFG---YMTAY--------------------- 206
Query: 380 SVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSIINTITSVLI 439
+SYN + + D ++++ N++ ++
Sbjct: 207 --------------------------------ASYNSKFSNAVQDALIIAGSNSLFEIIA 234
Query: 440 GVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCLAL 499
G +F +G + +E L G L FV YP+A+A++P NF+AVLFF +L L +
Sbjct: 235 GFAVFGIVGYLG--MTPGVEGEALGGFVLGFVTYPEAIAQMPGSNFFAVLFFLTLFLLGI 292
Query: 500 NSQFALVEVVVTSIQD-GFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQLI 558
+S FAL+E VVT I D G+ R +KR+ + VVC VSF LPY T+ G Y +
Sbjct: 293 SSAFALLEAVVTLICDSGWGRKVKRWWIA-----TVVCFVSFLLSLPYCTRFGYYLLDAV 347
Query: 559 DHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRF 605
D + ++ A+++V + E VA +Y +V G Y+
Sbjct: 348 DAWISNVALVFVVWAECVAATTVYR----FEDVVDQVGLPAFAYYNV 390
Score = 103 bits (259), Expect = 1e-23
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 67/243 (27%)
Query: 217 DHWTSKVQFILACVGYSIGIGNLWRFPHKV-------------------------LQISS 251
D W S+ F+LA +G ++G+GNL RFP V L+++
Sbjct: 1 DQWGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELAL 60
Query: 252 G----------IDQMGDFRWELVA-------------CSFVSWILVYFA----------- 277
G + + + A ++WI+VYF
Sbjct: 61 GQAYRGGCVKAFNLINRRAKGVGAAVVFGGFVVCTYYVPILAWIMVYFRHSFTVGWLAFT 120
Query: 278 -------LWKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFFLPNF-ELLS 329
+++ V S+GRV+Y T +P +LI + L +L + G+R +F + L+
Sbjct: 121 WFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLYFATWRGDKLA 180
Query: 330 DHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFI 389
++W A Q+F S G+ +G + ++SYN + + D ++++ N++ ++ G +F
Sbjct: 181 SGEIWQAAAGQVFFSTGVGFGYMTAYASYNSKFSNAVQDALIIAGSNSLFEIIAGFAVFG 240
Query: 390 TIG 392
+G
Sbjct: 241 IVG 243
Score = 69.3 bits (170), Expect = 2e-12
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
F +PY + L L IPIL +ELA+GQ R G + + + KG G + V F + TYY
Sbjct: 38 FFIPYLLALVLLAIPILILELALGQAYRGGCVKAFNLINRRAKGVGAAVVFGGFVVCTYY 97
Query: 122 NVLIAYSLYYFSTSF 136
++A+ + YF SF
Sbjct: 98 VPILAWIMVYFRHSF 112
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 151 bits (383), Expect = 2e-39
Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 2/203 (0%)
Query: 411 ISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIF 470
+ SYN YNN D +++ +N+ TS + G IF +G + YE I V GPGL F
Sbjct: 272 LGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAF 331
Query: 471 VVYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEI 530
+ YP+A+ +P WA LFF L+ L L+SQF VE +VT++ D +P+ +R E+
Sbjct: 332 IAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRRGYR-REL 390
Query: 531 VVLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTAS-TAVMYVAFFEVVAVAWIYGSDKLAR 589
++L + IVS+F GL +T+GG+Y FQL D Y AS +++VA FE + + W+YGS++
Sbjct: 391 LILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYGSNRFYD 450
Query: 590 NVHHMTGKFPSLYFRFCWSIAAP 612
N+ M G P ++CW + P
Sbjct: 451 NIEDMIGYRPLSLIKWCWMVITP 473
Score = 134 bits (339), Expect = 2e-33
Identities = 64/166 (38%), Positives = 98/166 (59%)
Query: 244 HKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIFVF 303
+VL IS GI+ +G+ RWEL C +W + YF +WK +S+G+V+Y TAT P++++ +
Sbjct: 161 RRVLAISDGIEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLIL 220
Query: 304 LCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNN 363
L +TL G+ G++++ P+ LSD +VWV+AG QIF S I G + SYN YNN
Sbjct: 221 LIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNN 280
Query: 364 QIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 409
D +++ +N+ TS + G IF +G + YE I V G
Sbjct: 281 NCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESG 326
Score = 99.3 bits (247), Expect = 7e-22
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYY 121
FL+PY + CGIP+ ++E A+GQFT G I K+CP F+G G ++ +I ++ YY
Sbjct: 40 FLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYY 99
Query: 122 NVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLSKPV 178
+++A++++Y F ++LPW CG+ WNT++C L + VS LQN + PV
Sbjct: 100 IIILAWAIFYLFNCFTTELPWATCGHEWNTENCVEFQKLNSSNCSHVS-LQNATSPV 155
Score = 43.0 bits (101), Expect = 4e-04
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFPH 244
+R HW +KV+F+L+ G IG+GN+WRFP+
Sbjct: 1 ERGHWNNKVEFVLSVAGEIIGLGNVWRFPY 30
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 132 bits (335), Expect = 2e-33
Identities = 79/369 (21%), Positives = 149/369 (40%), Gaps = 83/369 (22%)
Query: 255 QMGDFRWELVACSFVSWILVYFALWKSVRS----SGRVLYFTATIPFLLI-FVFLCF-SL 308
Q V + +L + + V+ + +++ +P L + F+ L ++
Sbjct: 136 QTISNPGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIM-----MPLLFVLFIILVIRAV 190
Query: 309 TLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVD 368
TL G+ GL++ F P+F L+D KVW+ A Q F S+ + +G
Sbjct: 191 TLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGI----------------- 233
Query: 369 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVV 428
ITY SSY + ++ + +
Sbjct: 234 ------------------------MITY---------------SSYLSKKSDLVSSALSI 254
Query: 429 SIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAV 488
++NT+ S+L G+ IF + + + GPGL+F+V P ++P + +
Sbjct: 255 VLLNTLISLLAGLVIFPALFSFGADAS--------QGPGLVFIVLPAVFNQMPLGTLFGI 306
Query: 489 LFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVT 548
LFF LL AL S +++EV+V ++ D F I R ++ I+ F G+P +
Sbjct: 307 LFFLLLLFAALTSAISMLEVLVAALIDKFG--ISRK-----KATWLIGILIFLLGIPSIL 359
Query: 549 QGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHMTGKFPSLYFRFCWS 608
G+ F L+D ++ + A + V W+ + L ++ + K ++ +
Sbjct: 360 SFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELLREELNAGSAKLFKIWL-YLVR 418
Query: 609 IAAPLLILI 617
AP++IL+
Sbjct: 419 YIAPIVILV 427
Score = 63.0 bits (154), Expect = 2e-10
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 61 VFLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCP--FFKGAGISSVIISFFMS 118
FL+PY I L L GIP+L E A+G+ R+ +G KL P ++ G V+ F +
Sbjct: 42 AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLIL 101
Query: 119 TYYNVLIAYSLYYFSTSFRSQLP 141
++Y+V+ + L Y S LP
Sbjct: 102 SFYSVIGGWILSYLVKSLTGALP 124
Score = 47.6 bits (114), Expect = 1e-05
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 214 RKRDHWTSKVQFILACVGYSIGIGNLWRFPHKV 246
KR+ W+S++ FILA G ++G+GN+WRFP+
Sbjct: 3 EKREQWSSRLGFILAAAGSAVGLGNIWRFPYMA 35
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 101 bits (255), Expect = 5e-23
Identities = 77/326 (23%), Positives = 131/326 (40%), Gaps = 73/326 (22%)
Query: 297 FLLIFVFLCFSLTLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFS 356
F+L+ + SLTL G+ GL++ F P+F L +V + A Q F S+ + G +
Sbjct: 176 FVLLIILAIRSLTLPGAGEGLKFLFKPDFSKL-TPEVVLAALGQAFFSLSLGMGVM---- 230
Query: 357 SYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNK 416
ITY SY
Sbjct: 231 -------------------------------------ITY---------------GSYLP 238
Query: 417 YNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQA 476
+ + ++V+I++T+ ++L G+ IF + + E + GPGL+F+ P
Sbjct: 239 KDENLPKSALIVAILDTLVALLAGLVIFPAV--FAFGLEPA------AGPGLLFITLPAV 290
Query: 477 LAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVC 536
A++P + +LFF LL AL S +L+EV V + D F K+ + IV +++
Sbjct: 291 FAQMPGGRLFGILFFLLLLFAALTSAISLLEVPVAYLIDEFGWSRKKATL---IVGIIIF 347
Query: 537 IVSFFFGLPY-----VTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
++ L + T G F L+D ++ + + V W+ G + L +
Sbjct: 348 LLGIPSALSFGVLSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAIFVGWVLGKEALREEL 407
Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
+ GK +RF AP+LILI
Sbjct: 408 NKGRGKKLFKIWRFLLRYVAPVLILI 433
Score = 66.7 bits (164), Expect = 1e-11
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCP---FFKGAGISSVIISFFMS 118
FL+ Y + + L G+P+L E A+G+ TR+ P+G +KL +K G V+ +F +
Sbjct: 38 FLLVYLLFVLLIGLPLLIAEFAIGRRTRKNPVGAFAKLAKGGKKWKLVGWLGVLGAFLIL 97
Query: 119 TYYNVLIAYSLYYFSTSFRSQL 140
++Y+V+ + L Y S
Sbjct: 98 SFYSVVGGWVLAYLFKSLTGSF 119
Score = 47.0 bits (113), Expect = 2e-05
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 217 DHWTSKVQFILACVGYSIGIGNLWRFP 243
+ W+S++ FILA G ++G+GN+WRFP
Sbjct: 1 EQWSSRLGFILAAAGSAVGLGNIWRFP 27
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 53.8 bits (130), Expect = 2e-07
Identities = 34/206 (16%), Positives = 89/206 (43%), Gaps = 9/206 (4%)
Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
+SY + ++ I++ ++ + +N V++G I I + ++ GL F+
Sbjct: 248 ASYLRKDDDIVLSSLTAASLNEFAEVILGGSIVIPA---AFAFLGAVAVAKAGTFGLGFI 304
Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
P +++P F+ L+FF L + S A+++ ++ +++ +W +++ +
Sbjct: 305 ALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIAMLQPLIAFLEEEL-KWSRKHAAL--WI 361
Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
+V IV ++ +D + + ++ + EV+ AWI+G+ K +
Sbjct: 362 FALVIIVGLPVAFEFIDLK---ALDELDFWVGTILLVVLGLIEVIVFAWIFGAKKGWEEI 418
Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
+ +F++ P +++
Sbjct: 419 NRGALIKVPRFFKYVIKYITPAFLIV 444
Score = 53.1 bits (128), Expect = 3e-07
Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 263 LVACSFVSWILVYFALWKSVRSSGRVLYFTATIPFLLIF--VFLCFSLTLD-------GS 313
+ +++ ++Y + K + + ++ +P L +F + LTL +
Sbjct: 151 FLITLALNFFILYRGVSKGIEAFAKIA-----MPLLYVFAIILAIRVLTLGTPVNPDWTA 205
Query: 314 EIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVDTMVVS 373
GL + + P+F L D KVW+ A QIF ++ + G +I ++SY + ++ I++ ++ +
Sbjct: 206 LKGLNFLWNPDFSKLKDPKVWLAAAGQIFFTLSLGMGIIINYASYLRKDDDIVLSSLTAA 265
Query: 374 IINTITSVLIGVFIFITI 391
+N V++G I I
Sbjct: 266 SLNEFAEVILGGSIVIPA 283
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRR-----GPIGVLSKLC--PFFKGAGISSVIIS 114
F++PYFI L GIP++++E A+G++ + P + F K G I
Sbjct: 39 FMIPYFIAFLLVGIPLMWVEWAMGRYGGKHGHGTTP-MIFLLAKRNIFAKILGAIGFAIP 97
Query: 115 FFMSTYYNVLIAYSLYYFSTSFRSQLPWQ 143
+++YY + +++L Y S P
Sbjct: 98 LLVNSYYVYIESWTLGYAFKSLTGGYPEP 126
Score = 40.7 bits (96), Expect = 0.002
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQ 248
R+HW S++ ILA G ++G+GN RFP + Q
Sbjct: 1 REHWGSRIGLILAMAGNAVGLGNFLRFPVQAAQ 33
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 36.5 bits (85), Expect = 0.042
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 350 GAVITFSSYNKYN-NQIIVDTMVVSIINTITSVLIGVFIFI---TIGNITYEHETSIENV 405
G V+T Y+ +N + + + + IN +T L + + + + E +
Sbjct: 714 GEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGL 773
Query: 406 ILDGFISSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDG 465
+ I+ ++S I I + L+ + FI + ++
Sbjct: 774 FNRKIFWRF-------ILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTV 826
Query: 466 PGLIFVVY--------PQALAKLPFPN--FWAVLFFFSLLCLAL 499
LI ++ L+ L F N W L +L L +
Sbjct: 827 LVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLI 870
>gnl|CDD|165328 PHA03030, PHA03030, hypothetical protein; Provisional.
Length = 122
Score = 31.9 bits (72), Expect = 0.32
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 374 IINTITSVLIGVFIFITIGNI---TYEHETSIENVILDGFISSYNKYNNQIIVDTMVVSI 430
I + + I +FIF I I +E ET + I + F + ++N +I + I
Sbjct: 4 IFLILIFLFIFLFIFFYIRIIKRDNFELETHETDEIANEFKDEIDNFDNDLINKFIQDMI 63
Query: 431 INTITSVLIGVFIFITIGNITYEHETSIENVI 462
I T I I E IEN+I
Sbjct: 64 IET------------RIKEI----EEEIENII 79
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 33.0 bits (75), Expect = 0.57
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 341 IFNSIGIAYGAVITFSSYNKYNNQIIVDTM---VVSIINTITSVLIGVFIFITIGNITYE 397
I A + T Y ++IVDT+ + NT++ L FI +I
Sbjct: 551 IIYDCQPAIDKIFTDEWYGGSVTKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIA 610
Query: 398 HETSIEN 404
+ +
Sbjct: 611 YLKQLGR 617
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 30.7 bits (69), Expect = 2.5
Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 7/149 (4%)
Query: 438 LIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFSLLCL 497
++ I I IT + + L YP LP L F +L
Sbjct: 239 ILVGLIGIAAYVITSDPQLMASLGNLPSAANADKAYPWLTQFLPGSVGVKGLVFAALAAA 298
Query: 498 ALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQL 557
++S A++ T + + + V+V +V G
Sbjct: 299 IVSSLAAMLNSTATILTMDIYKVFTF-----KTGVIVTAVVVLLI-AALQFAGVKGLLNT 352
Query: 558 IDHYTASTAVMYVAFFEVVAVAWIYGSDK 586
+ S AV +A ++ W+ +
Sbjct: 353 FLNLLTS-AVGPLALIMLLDYFWVKRTRI 380
>gnl|CDD|199217 cd10422, RNase_Ire1, RNase domain (also known as the kinase
extension nuclease domain) of Ire1. The model
represents the C-terminal endoribonuclease domain of the
multi-functional protein Ire1; Ire1 in addition contains
a type I transmembrane serine/threonine protein kinase
(STK) domain, and a Luminal dimerization domain. Ire1 is
essential for the endoplasmic reticulum (ER) unfolded
protein response (UPR), which acts as an ER stress
sensor and is the oldest and most conserved component of
the UPR in eukaryotes. During ER stress, IRE1 dimerizes
through its N-terminal luminal domain and forms
oligomers, promoting trans-autophosphorylation by its
cytosolic kinase domain. This leads to a conformational
change that stimulates its endoribonuclease (RNase)
activity and results in the cleavage of its mRNA
substrate, Hac1 in yeast and Xbp1 in metazoans, thus
promoting a splicing event that enables translation into
a transcription factor which activates the UPR. This
RNase domain is homologous to the RNase domain of RNase
L, and possesses a novel fold for a nuclease and appears
to be rigid irrespective of the activation state of
IRE1. Structural analysis and mutational studies have
revealed that an early stage 'phosphoryl-transfer'
competent conformation of IRE1 favors face-to-face
dimerization of the kinase domains which precedes and is
distinct from the RNase 'active' back-to-back
conformation. Furthermore, in yeast IRE1, the flavonol
quercetin activates the RNase and potentiates activation
of the protein kinase by ADP, hinting at the possible
existence of endogenous cytoplasmic ligands that may
function along with stress signals from ER lumen in
order to modulate IRE1 activity, thus identifying IRE1
as a target for development of ATP-competitive
inhibitors to modulate the UPR with specific relevance
for multiple myeloma.
Length = 129
Score = 29.1 bits (66), Expect = 2.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 286 GRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYF 320
G + YFT+ P LLI V+ S +L +Y+
Sbjct: 95 GFLRYFTSRFPNLLIHVYRAVSDSLKNESTFKKYY 129
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 29.9 bits (67), Expect = 4.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 426 MVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
++V ++N I +LIGV TI + E + VIL FV+YP
Sbjct: 266 VIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYP 314
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 29.8 bits (67), Expect = 4.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 267 SFVSW--ILVYFALWKSVRSSGRVLYF 291
S+ W V+FAL KSVR + R+LY+
Sbjct: 197 SYRGWQGASVHFALTKSVRDTRRLLYY 223
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 28.6 bits (64), Expect = 5.8
Identities = 7/59 (11%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 341 IFNSIGIAYGAVITFSSYNKYNNQIIVDTM-VVSIINTITSVLIGVFIFITIGNITYEH 398
++ ++ + V++F I + ++S+ ++I +++ +F + + + + H
Sbjct: 92 LYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFH 150
>gnl|CDD|191530 pfam06454, DUF1084, Protein of unknown function (DUF1084). This
family consists of several hypothetical plant specific
proteins of unknown function.
Length = 280
Score = 28.6 bits (64), Expect = 9.5
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 454 HETSIENVILDGPGLIFVVYPQALAKLPFPNFWAVLFFFS--LLCLALNSQFALVEVVVT 511
H +++++LD PGL F L FWA +++ + L L F + VV
Sbjct: 88 HPKILQHILLDLPGLAFFTTYALLVL-----FWAEIYYQARNLPTDKLRPAFYTINGVVY 142
Query: 512 SIQDGF--PRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYFFQL 557
+IQ W + ++SF L ++ GG F L
Sbjct: 143 AIQIIIWILIWAGPNSAMEITSKIFFAVISFSAALGFLLYGGRLFLML 190
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.449
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,743,941
Number of extensions: 3330751
Number of successful extensions: 5590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5397
Number of HSP's successfully gapped: 352
Length of query: 631
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 528
Effective length of database: 6,369,140
Effective search space: 3362905920
Effective search space used: 3362905920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (27.6 bits)