RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11511
(631 letters)
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 131 bits (332), Expect = 9e-33
Identities = 59/386 (15%), Positives = 125/386 (32%), Gaps = 80/386 (20%)
Query: 242 FPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWKSVRS----SGRVLYFTATIPF 297
F + + + G + + ++ + L + + ++ +P
Sbjct: 147 FLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIA-----MPT 201
Query: 298 LLIFVFLC--FSLTLD----GSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGA 351
L I L+ + GL + + P+FE L D VW+ A QIF ++ + +GA
Sbjct: 202 LFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 352 VITFSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFI 411
+ ITY
Sbjct: 262 I-----------------------------------------ITY--------------- 265
Query: 412 SSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFV 471
+SY + + I++ + + +N V++G I I + ++ L F+
Sbjct: 266 ASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFI 325
Query: 472 VYPQALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIV 531
P ++ F L+FF L L S A+++ ++ ++D + R +
Sbjct: 326 TLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK--LSR-----KHA 378
Query: 532 VLVVCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNV 591
VL + FF +D + + V++ E++ WI+G+DK +
Sbjct: 379 VLWTAAIVFFSAHL--VMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEI 436
Query: 592 HHMTGKFPSLYFRFCWSIAAPLLILI 617
+ + + P + +
Sbjct: 437 NRGGIIKVPRIYYYVMRYITPAFLAV 462
Score = 64.3 bits (157), Expect = 5e-11
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 62 FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLC------PFFKGAGISSVIISF 115
F++PY I L GIP++++E A+G++ G + F K G+ + I
Sbjct: 43 FMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPL 102
Query: 116 FMSTYYNVLIAYSLYYFSTSFRSQLP 141
++ YY + +++L + +P
Sbjct: 103 VVAIYYVYIESWTLGFAIKFLVGLVP 128
Score = 49.7 bits (119), Expect = 2e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 215 KRDHWTSKVQFILACVGYSIGIGNLWRFP 243
KR+HW +++ ILA G ++G+GN RFP
Sbjct: 4 KREHWATRLGLILAMAGNAVGLGNFLRFP 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 4e-05
Identities = 68/514 (13%), Positives = 124/514 (24%), Gaps = 154/514 (29%)
Query: 184 SEEFYNISDEMSTCSSYSDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFP 243
E S D + + F N+ R
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-----------------------NVSR-L 134
Query: 244 HKVLQISSGIDQMGDFRWELVACSFVSWILVY----FALWKSVRSSGRVLYFTATIPFLL 299
L++ + ++ +L+ K+ + V +
Sbjct: 135 QPYLKLRQALLELRP----------AKNVLIDGVLGSG--KTWVAL-DVC---LSYKVQC 178
Query: 300 IFVFLCFSLTL-----DGSEI----GLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYG 350
F F L L + + L Y PN+ SDH + I I
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH------SSNIKLRIHSIQA 232
Query: 351 AVITFSSYNKYNNQ-IIVDTMVVSIINTITSVLIGVFIFIT---------IGNITYEHET 400
+ Y N +++ V + + I +T + T H +
Sbjct: 233 ELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 401 SIENVILDGFISSYN-----KYNNQIIVDT-MVVSIINTITSVLIGVFI---FITIGNIT 451
+ KY + D V N +I I T N
Sbjct: 291 LDHH--SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-- 346
Query: 452 YEH----------ETSIENVILDGPGLI------FVVYPQALAKLP---FPNFWAVLFFF 492
++H E+S+ L+ P V+P + A +P W
Sbjct: 347 WKHVNCDKLTTIIESSLNV--LE-PAEYRKMFDRLSVFPPS-AHIPTILLSLIWF----- 397
Query: 493 SLLCLALNSQFALVEVVVTSIQDGF--PRWIKRYLV-CHEIVVLVVCIVSFFFGLPYVTQ 549
+ + V VVV + + K + I + + + + +
Sbjct: 398 -------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---NEYALHR 447
Query: 550 GGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIY---GSDKLARNVHHMTGK--------F 598
++DHY + Y G HH+ F
Sbjct: 448 ------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--------HHLKNIEHPERMTLF 493
Query: 599 PSLYFRFCWS----IAAPLLILIRISLTHLLGQL 628
++ F + S+ + L QL
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 34.8 bits (79), Expect = 0.091
Identities = 21/158 (13%), Positives = 46/158 (29%), Gaps = 17/158 (10%)
Query: 309 TLDGSEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVITFSSYNKYNNQIIVD 368
GL ++ + + + N + S+ +G N++ +
Sbjct: 146 FHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWE 205
Query: 369 TMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSYNKYNNQIIVDTMVV 428
+ G +F + + E+ + N I S++ N +
Sbjct: 206 -----------NSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQA 254
Query: 429 SIINTITSVLI------GVFIFITIGNITYEHETSIEN 460
+ IT + G G +T + TS +N
Sbjct: 255 VGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKN 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.52
Identities = 62/440 (14%), Positives = 110/440 (25%), Gaps = 184/440 (41%)
Query: 57 GNIRV-FLVP---YFIIL-----FLCGIPILYMELA-----------VGQF-------TR 89
G++ LVP +FI F +P A VG+F
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 90 RGPIG----VLSKL-----CPFFKGAGISSVIISFFMS-------------TYYNVLIA- 126
+G VL+ + +G I ++ Y I
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 127 ---YSLYYFSTSFRS--------------QLPWQHCGNRWNTQHCW--------VPPTLT 161
+ S FR+ Q GN T + L
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQ------GN---TDDYFEELRDLYQTYHVLV 184
Query: 162 GEDL--GAVSLLQNLSKPV-------------------PSKTPSEEFYNISDEMSTCSSY 200
DL + L L + PS TP +++ + +
Sbjct: 185 -GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY------LLSI--- 234
Query: 201 SDSISDVGSTFKPRKRDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFR 260
IS +++ G L + S G+
Sbjct: 235 --PISCPLIGV--------IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL------- 277
Query: 261 WELVACSFVSWILVYFAL---WKSVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGSEIGL 317
+ A V A W+S F ++ + +F IG+
Sbjct: 278 --VTA--------VAIAETDSWES---------FFVSVRKAITVLFF----------IGV 308
Query: 318 R---YFFLPNFEL-LSDHKVWVNAGAQI----FNSIGIAYGAVITF-SSYNKY---NNQI 365
R + PN L S + + + + + V + + N + Q+
Sbjct: 309 RCYEAY--PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 366 IVDTMVVSIINTITS-VLIG 384
+S++N + V+ G
Sbjct: 367 -----EISLVNGAKNLVVSG 381
Score = 32.3 bits (73), Expect = 0.57
Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 53/201 (26%)
Query: 74 GIPILYMELAVGQFTRRGPIGVLSKLCPFFKGAGISSVIISFFMSTYYNVLIAY--SLYY 131
G+P M L++ T+ ++K V IS V+ SLY
Sbjct: 333 GVPS-PM-LSISNLTQEQVQDYVNKTNSHLPAG--KQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 132 FSTSFR----------SQLPWQHCGNRWNTQHCWVP-------PTLTG------EDLGAV 168
+ + R S++P + + ++P L +DL
Sbjct: 389 LNLTLRKAKAPSGLDQSRIP--FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 169 SLL---QNLSKPVPSKTPSEEFYNISDEMSTCSSYSDSISD--VGSTFKPRKRDHWTSKV 223
++ +++ PV Y+ D S S SIS+ V R W +
Sbjct: 447 NVSFNAKDIQIPV---------YDTFDG-SDLRVLSGSISERIVDCII--RLPVKWETTT 494
Query: 224 QF----ILAC-VGYSIGIGNL 239
QF IL G + G+G L
Sbjct: 495 QFKATHILDFGPGGASGLGVL 515
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.69
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 11/32 (34%)
Query: 16 ESKLGVHFLVSPNCAP-LQTKVSDWTSSFKIE 46
++ L L + + AP L K + +E
Sbjct: 26 QASLK---LYADDSAPALAIKAT-------ME 47
>1ny7_2 Cowpea mosaic virus, large (L) subunit; comovirus, viral coat
protein, cowpea mosaic virus (CPMV), icosahedral virus;
3.00A {Cowpea mosaic virus} SCOP: b.121.4.2 b.121.4.2
PDB: 2bfu_L
Length = 369
Score = 30.9 bits (69), Expect = 1.2
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 221 SKVQFILACVGYSIGIGNLWRFPHKVLQISSGIDQMGDFRWELVACSFVSWILVYFALWK 280
+ V F++A S G FPH+++Q + ++ + + F
Sbjct: 260 ATVTFLIAFGNLSDAFGFYESFPHRIVQFAEVEEK-----------CTLVFSQQEFVTAW 308
Query: 281 SVRSSGRVLYFTATIPFLLIFVFLCFSLTLDGS-EIGLRYFFLPNFELLSDHKVWVNA 337
S + + R P+L + + T+ G +G++ + +F + + +
Sbjct: 309 STQVNPRTTLEADGCPYLYAIIHDSTTGTISGDFNLGVKLVGIKDFCGIGSNPGIDGS 366
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 29.4 bits (66), Expect = 3.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 286 GRVLYFTATIPFLLIFVFLCFSLTLDGSEIGLRYFF 321
G YFT P LLI V++ L +I + +
Sbjct: 398 GFYDYFTKRFPNLLIGVYMIVKENLSDDQILREFLY 433
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 28.4 bits (63), Expect = 7.4
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 125 IAYSLYYFSTSFRSQLPWQH 144
+ Y L YF R LPWQ
Sbjct: 199 LGYVLMYF---LRGSLPWQG 215
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 28.2 bits (63), Expect = 8.8
Identities = 4/41 (9%), Positives = 10/41 (24%)
Query: 115 FFMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCW 155
S + + +S + G+R +
Sbjct: 289 VIASRSGSTPLFFSRPEGGGNGVRFPGKSQIGDRGSALFED 329
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.449
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,835,599
Number of extensions: 599713
Number of successful extensions: 1160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 33
Length of query: 631
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 532
Effective length of database: 3,937,614
Effective search space: 2094810648
Effective search space used: 2094810648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.1 bits)