RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11511
         (631 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score =  113 bits (284), Expect = 2e-27
 Identities = 56/383 (14%), Positives = 126/383 (32%), Gaps = 70/383 (18%)

Query: 240 WRFPHKVLQISSGIDQMGDFRWE----LVACSFVSWILVYFALWKSVRSSGRVLYFTATI 295
             F +  + +  G + +           +   F++  ++   + K +    ++   T  I
Sbjct: 141 KEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFI 200

Query: 296 PFLLIFVFLCFSLTLDG-SEIGLRYFFLPNFELLSDHKVWVNAGAQIFNSIGIAYGAVIT 354
             + + + +    T +G +  GL + + P+FE L D  VW+ A  QIF            
Sbjct: 201 LAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFF----------- 249

Query: 355 FSSYNKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGFISSY 414
                                    ++ +G    IT                     +SY
Sbjct: 250 -------------------------TLSLGFGAIITY--------------------ASY 264

Query: 415 NKYNNQIIVDTMVVSIINTITSVLIGVFIFITIGNITYEHETSIENVILDGPGLIFVVYP 474
            + +  I++  +  + +N    V++G  I I      +    ++         L F+  P
Sbjct: 265 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLP 324

Query: 475 QALAKLPFPNFWAVLFFFSLLCLALNSQFALVEVVVTSIQDGFPRWIKRYLVCHEIVVLV 534
              ++     F   L+FF L    L S  A+++ ++  ++D      K  ++    +V  
Sbjct: 325 AIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFF 384

Query: 535 VCIVSFFFGLPYVTQGGIYFFQLIDHYTASTAVMYVAFFEVVAVAWIYGSDKLARNVHHM 594
              +  F                +D +  +  V++    E++   WI+G+DK    ++  
Sbjct: 385 SAHLVMFLN---------KSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRG 435

Query: 595 TGKFPSLYFRFCWSIAAPLLILI 617
                   + +      P  + +
Sbjct: 436 GIIKVPRIYYYVMRYITPAFLAV 458



 Score = 82.5 bits (203), Expect = 3e-17
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 62  FLVPYFIILFLCGIPILYMELAVGQFTRRGPIGVLSKLCP------FFKGAGISSVIISF 115
           F++PY I   L GIP++++E A+G++      G    +        F K  G+  + I  
Sbjct: 39  FMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPL 98

Query: 116 FMSTYYNVLIAYSLYYFSTSFRSQLPWQHCGNRWNTQHCWVPPTLTGEDLGAVSLLQNLS 175
            ++ YY  + +++L +        +P                       +G     + + 
Sbjct: 99  VVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPIL 158

Query: 176 KP 177
           KP
Sbjct: 159 KP 160



 Score = 49.4 bits (117), Expect = 9e-07
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 216 RDHWTSKVQFILACVGYSIGIGNLWRFPHKVLQ 248
           R+HW +++  ILA  G ++G+GN  RFP +  +
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAE 33


>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
           {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 31.4 bits (70), Expect = 0.34
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 508 VVVTSIQDGFPRWIKRYLVCHEIVVLVVCIVSFFFGLPYVTQGGIYF 554
            +VT ++DG     K Y+   +     V ++S F G        +  
Sbjct: 354 GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIV 400


>d1pgl22 b.121.4.2 (2:183-370) Comovirus coat proteins (VP37 and
           VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
          Length = 188

 Score = 28.3 bits (63), Expect = 2.1
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 223 VQFILACVGYSIGIGNLWRFPHKVLQISSG 252
           V F +A    +    N   FPHK++Q    
Sbjct: 80  VSFFIAFGNLADDTINFEAFPHKLVQFGEI 109


>d1lwba_ a.133.1.3 (A:) Prokaryotic phospholipase A2 {Streptomyces
           violaceoruber [TaxId: 1935]}
          Length = 122

 Score = 27.3 bits (60), Expect = 2.5
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 132 FSTSFRSQLPWQHCGNRWNTQHCWVPP 158
           +  + R+Q  W      W+T  C   P
Sbjct: 23  WLAANRNQSAWAAYEFDWSTDLCTQAP 49


>d1ny722 b.121.4.2 (2:183-369) Comovirus coat proteins (VP37 and
           VP23) {CPMV (Cowpea mosaic virus) [TaxId: 12264]}
          Length = 187

 Score = 27.1 bits (60), Expect = 5.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 223 VQFILACVGYSIGIGNLWRFPHKVLQISSG 252
           V F++A    S   G    FPH+++Q +  
Sbjct: 80  VTFLIAFGNLSDAFGFYESFPHRIVQFAEV 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.449 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,430,622
Number of extensions: 115769
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 18
Length of query: 631
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 540
Effective length of database: 1,158,166
Effective search space: 625409640
Effective search space used: 625409640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.1 bits)