Query psy11512
Match_columns 62
No_of_seqs 123 out of 1061
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:19:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_G Small nuclear ribonucle 99.9 5.8E-24 2E-28 119.9 5.7 61 1-61 1-61 (76)
2 1h64_1 SnRNP SM-like protein; 99.9 3.6E-22 1.2E-26 111.9 7.8 61 1-61 1-61 (75)
3 4emk_B U6 snRNA-associated SM- 99.9 3E-22 1E-26 112.5 7.0 61 1-61 1-61 (75)
4 1i4k_A Putative snRNP SM-like 99.9 1E-21 3.5E-26 110.4 7.6 61 1-61 1-61 (77)
5 1th7_A SnRNP-2, small nuclear 99.8 3.2E-21 1.1E-25 109.5 7.1 55 7-61 12-66 (81)
6 1d3b_B Protein (small nuclear 99.8 3.3E-21 1.1E-25 111.3 6.7 61 1-61 1-71 (91)
7 1d3b_A Protein (small nuclear 99.8 3.7E-20 1.3E-24 104.2 8.7 61 1-61 1-62 (75)
8 4emk_A U6 snRNA-associated SM- 99.8 4.2E-20 1.4E-24 108.3 9.1 56 6-61 21-78 (94)
9 3s6n_F Small nuclear ribonucle 99.8 3E-20 1E-24 107.0 7.6 61 1-61 1-63 (86)
10 1ljo_A Archaeal SM-like protei 99.8 3.5E-20 1.2E-24 104.3 7.6 55 7-61 8-63 (77)
11 1mgq_A SM-like protein; LSM, R 99.8 7.8E-20 2.7E-24 104.3 9.0 55 7-61 18-72 (83)
12 1i8f_A Putative snRNP SM-like 99.8 5.8E-20 2E-24 104.4 7.3 54 7-61 14-67 (81)
13 4emk_C U6 snRNA-associated SM- 99.8 1.5E-19 5.2E-24 108.7 7.9 56 6-61 25-87 (113)
14 1n9r_A SMF, small nuclear ribo 99.8 9.2E-20 3.1E-24 106.4 6.6 56 6-61 23-79 (93)
15 3bw1_A SMX4 protein, U6 snRNA- 99.8 1.3E-19 4.3E-24 106.1 6.7 55 7-61 13-74 (96)
16 4emg_A Probable U6 snRNA-assoc 99.8 5.9E-19 2E-23 102.8 8.9 57 5-61 9-79 (93)
17 3pgw_B SM B; protein-RNA compl 99.8 4E-19 1.4E-23 117.7 8.1 61 1-61 1-71 (231)
18 3s6n_E Small nuclear ribonucle 99.8 4.8E-19 1.6E-23 103.3 5.2 56 6-61 17-78 (92)
19 1b34_A Protein (small nuclear 99.8 2.1E-18 7.3E-23 104.2 7.7 56 6-61 4-59 (119)
20 4emh_A Probable U6 snRNA-assoc 99.8 2.7E-18 9.4E-23 102.2 7.8 55 7-61 19-74 (105)
21 2y9a_D Small nuclear ribonucle 99.7 6.3E-18 2.1E-22 103.4 8.6 61 1-61 1-62 (126)
22 2fwk_A U6 snRNA-associated SM- 99.7 2.6E-18 8.8E-23 104.0 4.8 45 6-50 29-74 (121)
23 1b34_B Protein (small nuclear 99.7 5.1E-17 1.7E-21 97.9 6.3 45 6-50 28-75 (118)
24 1m5q_A SMAP3, small nuclear ri 99.7 2.3E-16 7.8E-21 96.9 6.4 51 7-61 3-53 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.1 3.2E-10 1.1E-14 65.5 6.0 42 4-45 7-49 (86)
26 1kq1_A HFQ, HOST factor for Q 97.4 0.00032 1.1E-08 39.4 4.5 37 8-44 11-49 (77)
27 2qtx_A Uncharacterized protein 97.3 0.00043 1.5E-08 38.4 4.8 34 11-44 22-55 (71)
28 2ylb_A Protein HFQ; RNA-bindin 97.3 0.00037 1.3E-08 38.9 3.9 36 8-43 13-50 (74)
29 1u1s_A HFQ protein; SM-like ba 97.1 0.00082 2.8E-08 38.2 4.0 35 8-42 11-47 (82)
30 3ahu_A Protein HFQ; SM-like mo 97.0 0.0015 5.2E-08 36.8 4.7 36 9-44 16-53 (78)
31 3sb2_A Protein HFQ; SM-like, R 96.9 0.0014 4.8E-08 37.0 4.0 34 8-41 12-47 (79)
32 2y90_A Protein HFQ; RNA-bindin 96.9 0.00094 3.2E-08 39.5 3.2 37 8-44 13-51 (104)
33 4a53_A EDC3; RNA binding prote 96.2 0.0098 3.3E-07 36.1 4.9 38 8-46 6-45 (125)
34 2vxe_A CG10686-PA; EDC3, CAR-1 96.0 0.026 8.8E-07 32.4 5.8 42 10-51 9-51 (88)
35 1ycy_A Conserved hypothetical 96.0 0.01 3.5E-07 32.5 3.8 48 1-49 1-50 (71)
36 2fb7_A SM-like protein, LSM-14 95.3 0.024 8.1E-07 32.9 3.8 41 9-49 14-55 (95)
37 1ib8_A Conserved protein SP14. 95.1 0.025 8.4E-07 35.1 3.8 32 6-37 96-131 (164)
38 2vc8_A Enhancer of mRNA-decapp 94.5 0.097 3.3E-06 29.7 4.9 37 10-46 5-43 (84)
39 3rux_A BIRA bifunctional prote 93.9 0.28 9.7E-06 32.2 7.0 35 11-45 221-255 (270)
40 3hfo_A SSR3341 protein; HFQ, S 93.3 0.3 1E-05 26.7 5.2 35 9-43 14-50 (70)
41 1y96_B Gemin7, SIP3, GEM-assoc 93.0 0.24 8.1E-06 28.2 4.7 36 9-44 24-60 (85)
42 3hfn_A ASL2047 protein; HFQ, S 91.8 0.57 1.9E-05 25.7 5.2 35 9-43 16-52 (72)
43 2ej9_A Putative biotin ligase; 86.4 1.5 5E-05 28.1 4.9 32 12-44 190-221 (237)
44 1bia_A BIRA bifunctional prote 84.1 2 6.8E-05 28.4 4.9 33 11-44 270-302 (321)
45 2dxu_A Biotin--[acetyl-COA-car 82.4 1.3 4.3E-05 28.4 3.3 30 13-44 188-217 (235)
46 2rm4_A CG6311-PB, DM EDC3; enh 80.7 6.3 0.00022 22.9 5.6 37 10-47 8-45 (103)
47 3bfm_A Biotin protein ligase-l 80.1 3.3 0.00011 26.2 4.6 29 11-44 191-219 (235)
48 2eay_A Biotin [acetyl-COA-carb 79.7 1 3.6E-05 28.7 2.2 32 11-44 185-216 (233)
49 3rkx_A Biotin-[acetyl-COA-carb 79.4 2.8 9.5E-05 28.0 4.3 33 11-44 276-308 (323)
50 4hcz_A PHD finger protein 1; p 78.3 4.3 0.00015 21.4 3.9 25 13-37 6-30 (58)
51 2e12_A SM-like motif, hypothet 78.3 2.9 0.0001 24.1 3.5 17 15-31 29-45 (101)
52 1sg5_A ORF, hypothetical prote 72.7 2.9 9.8E-05 23.4 2.5 24 8-31 19-42 (86)
53 1ky9_A Protease DO, DEGP, HTRA 66.9 10 0.00035 26.2 4.8 31 15-45 111-141 (448)
54 4a8c_A Periplasmic PH-dependen 66.5 11 0.00038 25.8 4.8 31 15-45 88-118 (436)
55 3fb9_A Uncharacterized protein 62.9 15 0.00052 20.7 4.2 27 8-34 19-49 (90)
56 2eqj_A Metal-response element- 62.2 16 0.00053 19.6 4.0 26 12-37 15-40 (66)
57 2qqr_A JMJC domain-containing 59.2 15 0.00051 21.6 3.9 24 12-35 7-30 (118)
58 2xk0_A Polycomb protein PCL; t 58.8 20 0.00067 19.4 6.4 27 10-36 15-41 (69)
59 3stj_A Protease DEGQ; serine p 58.3 16 0.00056 24.2 4.4 30 15-44 88-117 (345)
60 2m0o_A PHD finger protein 1; t 55.6 6.8 0.00023 21.8 1.8 28 10-37 26-53 (79)
61 3pv2_A DEGQ; trypsin fold, PDZ 55.1 15 0.0005 25.5 3.9 31 15-45 102-132 (451)
62 3sti_A Protease DEGQ; serine p 53.6 19 0.00065 22.8 4.0 30 15-44 88-117 (245)
63 1y8t_A Hypothetical protein RV 50.4 26 0.00087 22.7 4.3 30 15-44 64-93 (324)
64 3lgi_A Protease DEGS; stress-s 50.0 31 0.0011 21.3 4.5 29 15-43 77-105 (237)
65 3tjo_A Serine protease HTRA1; 49.7 32 0.0011 21.3 4.5 31 14-44 86-116 (231)
66 1te0_A Protease DEGS; two doma 49.5 29 0.00098 22.5 4.4 30 15-44 66-95 (318)
67 1lcy_A HTRA2 serine protease; 48.6 31 0.0011 22.5 4.5 30 15-44 71-100 (325)
68 2p5z_X Type VI secretion syste 48.6 30 0.001 23.8 4.6 29 7-35 56-95 (491)
69 3tee_A Flagella basal BODY P-r 46.3 16 0.00056 23.1 2.8 24 10-33 167-190 (219)
70 3sgr_A Tandem repeat of amyloi 46.2 19 0.00065 15.5 2.6 20 41-62 5-24 (25)
71 3qo6_A Protease DO-like 1, chl 41.8 40 0.0014 22.1 4.3 29 15-43 77-105 (348)
72 3uby_A DNA-3-methyladenine gly 41.3 47 0.0016 21.4 4.4 29 10-38 21-49 (219)
73 3num_A Serine protease HTRA1; 40.6 58 0.002 21.1 4.9 29 15-43 70-98 (332)
74 1x4r_A PARP14 protein; WWE dom 40.3 1.5 5.3E-05 25.3 -2.5 19 28-46 34-52 (99)
75 2xdp_A Lysine-specific demethy 40.1 47 0.0016 19.6 4.0 24 12-35 66-89 (123)
76 4g9s_B Inhibitor of G-type lys 39.2 16 0.00055 20.5 1.7 22 14-35 2-26 (111)
77 4fln_A Protease DO-like 2, chl 38.5 37 0.0013 24.4 3.9 29 15-43 97-126 (539)
78 4gop_A Putative uncharacterize 38.1 26 0.0009 20.0 2.6 21 1-21 1-25 (114)
79 3qx1_A FAS-associated factor 1 33.7 34 0.0012 18.0 2.5 20 16-35 9-28 (84)
80 3kdf_A Replication protein A 1 32.9 30 0.001 20.0 2.3 15 7-21 15-29 (121)
81 3mkv_A Putative amidohydrolase 32.2 8.9 0.0003 23.3 -0.1 24 14-37 398-421 (426)
82 3kl9_A PEPA, glutamyl aminopep 32.0 46 0.0016 22.3 3.3 24 10-33 95-118 (355)
83 2e5p_A Protein PHF1, PHD finge 31.9 63 0.0021 17.3 4.0 25 13-37 12-36 (68)
84 3frn_A Flagellar protein FLGA; 31.7 42 0.0015 22.4 3.1 24 10-33 236-260 (278)
85 2pi2_E Replication protein A 1 31.4 31 0.0011 20.6 2.2 35 7-43 36-77 (142)
86 2e5q_A PHD finger protein 19; 31.1 59 0.002 17.2 3.0 25 13-37 10-34 (63)
87 1zbp_A Hypothetical protein VP 30.8 42 0.0014 22.3 2.9 29 4-32 179-207 (273)
88 4a4f_A SurviVal of motor neuro 30.7 57 0.0019 16.4 3.4 28 9-36 7-35 (64)
89 2dzk_A UBX domain-containing p 26.4 64 0.0022 18.0 2.9 21 14-34 13-33 (109)
90 1q38_A Fibronectin; amyloid fi 26.0 49 0.0017 18.6 2.2 20 21-40 45-64 (89)
91 2dir_A Thump domain-containing 25.3 73 0.0025 17.1 3.0 23 13-35 73-95 (98)
92 1l1j_A Heat shock protease HTR 24.7 27 0.00093 21.9 1.2 29 15-43 80-108 (239)
93 2wr8_A Putative uncharacterize 24.6 73 0.0025 20.8 3.2 20 24-43 171-190 (259)
94 2equ_A PHD finger protein 20-l 23.2 94 0.0032 16.4 4.1 24 13-36 12-35 (74)
95 2w5e_A Putative serine proteas 23.1 1.2E+02 0.0043 17.8 5.1 26 15-42 43-68 (163)
96 2zbv_A Uncharacterized conserv 22.8 78 0.0027 20.7 3.1 20 24-43 167-186 (263)
97 3sz6_A Conserved domain protei 22.6 88 0.003 17.9 3.0 24 5-28 26-49 (121)
98 1wj4_A KIAA0794 protein; UBX d 22.4 66 0.0023 18.4 2.5 21 15-35 44-64 (124)
99 1zq1_A Glutamyl-tRNA(Gln) amid 22.1 56 0.0019 22.9 2.4 36 13-48 14-57 (438)
100 3j21_c 50S ribosomal protein L 21.8 82 0.0028 17.5 2.6 28 8-35 34-61 (87)
101 2k78_A Iron-regulated surface 21.0 86 0.0029 18.8 2.8 39 6-44 43-82 (147)
102 2cr5_A Reproduction 8; UBX dom 20.9 89 0.0031 17.3 2.8 22 14-35 23-44 (109)
103 1o9y_A HRCQ2; secretory protei 20.7 1.1E+02 0.0037 16.2 3.9 35 9-43 44-78 (84)
104 3uep_A YSCQ-C, type III secret 20.4 1.2E+02 0.0041 16.6 3.7 36 9-44 48-83 (96)
105 3p8d_A Medulloblastoma antigen 20.3 1.1E+02 0.0037 16.1 4.2 25 13-37 9-33 (67)
106 1yr1_A Divib, FTSQ, cell-divis 20.2 18 0.00061 20.6 -0.4 23 14-36 80-102 (119)
107 2keq_A DNA polymerase III alph 20.2 89 0.0031 17.9 2.7 17 14-30 55-71 (139)
No 1
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.90 E-value=5.8e-24 Score=119.91 Aligned_cols=61 Identities=70% Similarity=1.096 Sum_probs=41.9
Q ss_pred CCCCCchhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
||++++++|.++++++|+|+|+||++|+|+|.|||+|||++|+||+|+..+++.+.+|.++
T Consensus 1 ms~~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~ 61 (76)
T 3s6n_G 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61 (76)
T ss_dssp -------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEE
T ss_pred CCCcchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEE
Confidence 9999999999999999999999999999999999999999999999998877788888764
No 2
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.87 E-value=3.6e-22 Score=111.88 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=55.1
Q ss_pred CCCCCchhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
||..+.++|.++++++|+|+++||++|+|+|.|||+|||++|+||+|+..+...+.+|.++
T Consensus 1 m~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~ 61 (75)
T 1h64_1 1 MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIV 61 (75)
T ss_dssp --CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCchHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEE
Confidence 7777777799999999999999999999999999999999999999998888888999874
No 3
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.87 E-value=3e-22 Score=112.52 Aligned_cols=61 Identities=31% Similarity=0.434 Sum_probs=56.5
Q ss_pred CCCCCchhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
||..|.++|+++++++|+|+|+||++|+|+|.|||+|||++|+||+|+..++..+++|.++
T Consensus 1 m~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~ 61 (75)
T 4emk_B 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAF 61 (75)
T ss_dssp CCSHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEE
Confidence 7877778899999999999999999999999999999999999999998777788899875
No 4
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.86 E-value=1e-21 Score=110.36 Aligned_cols=61 Identities=30% Similarity=0.465 Sum_probs=55.0
Q ss_pred CCCCCchhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
||..+.++|.++++++|+|+|+||++|.|+|.|||+|||++|+||+|+..++..+.+|.++
T Consensus 1 m~~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~ 61 (77)
T 1i4k_A 1 MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVV 61 (77)
T ss_dssp --CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEE
Confidence 7776667799999999999999999999999999999999999999999888888999874
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.85 E-value=3.2e-21 Score=109.55 Aligned_cols=55 Identities=33% Similarity=0.572 Sum_probs=51.8
Q ss_pred hhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
++|.++++++|+|+|+||++|.|+|.|||+|||++|+||+|+..+...+.+|.++
T Consensus 12 ~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~ 66 (81)
T 1th7_A 12 KVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIV 66 (81)
T ss_dssp HHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEE
Confidence 4589999999999999999999999999999999999999998888889999875
No 6
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.84 E-value=3.3e-21 Score=111.27 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=49.5
Q ss_pred CCCCCchhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEec----------CCceeeeeEee
Q psy11512 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRK----------DNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------~~~~~~lG~v~ 61 (62)
|+-.+.++|.++++++|+|+++|||+|.|+|.|||+||||+|+||+|+.. ....+.+|.|+
T Consensus 1 m~~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~ 71 (91)
T 1d3b_B 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVL 71 (91)
T ss_dssp ------CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEE
T ss_pred CCCChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEE
Confidence 66667788999999999999999999999999999999999999999752 23577889875
No 7
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.83 E-value=3.7e-20 Score=104.16 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCCCCchh-HHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 1 MSKSHPPE-LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~-L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
||-..|.. |++++|++|.|+|++|++|+|+|.|||+|||++|+||+|+..++..+++|.++
T Consensus 1 ~~~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~ 62 (75)
T 1d3b_A 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVY 62 (75)
T ss_dssp ---CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEE
Confidence 56656655 79999999999999999999999999999999999999998777888999874
No 8
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.83 E-value=4.2e-20 Score=108.26 Aligned_cols=56 Identities=25% Similarity=0.478 Sum_probs=51.5
Q ss_pred chh-HHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEe-cCCceeeeeEee
Q psy11512 6 PPE-LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYR-KDNTVHNIGMVE 61 (62)
Q Consensus 6 ~~~-L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~lG~v~ 61 (62)
|.. |.++++++|+|++++|++|+|+|.|||+||||+|+||+|+. .++..+.+|.++
T Consensus 21 Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~ 78 (94)
T 4emk_A 21 PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEML 78 (94)
T ss_dssp HHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEE
T ss_pred CHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEE
Confidence 544 79999999999999999999999999999999999999998 667788999875
No 9
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.82 E-value=3e-20 Score=106.99 Aligned_cols=61 Identities=30% Similarity=0.348 Sum_probs=51.5
Q ss_pred CCCCCch--hHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 1 MSKSHPP--ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~--~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
||....| +|+++++++|+|+|++|++|+|+|.|||+|||++|+||+|+..+...+.+|.++
T Consensus 1 ms~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~ 63 (86)
T 3s6n_F 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVL 63 (86)
T ss_dssp --CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEE
T ss_pred CCcCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEE
Confidence 6655433 489999999999999999999999999999999999999997665677888764
No 10
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.82 E-value=3.5e-20 Score=104.27 Aligned_cols=55 Identities=24% Similarity=0.520 Sum_probs=51.5
Q ss_pred hhHHhcCCCEEEEEECCC-eEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 7 PELKKFMDKKVTLKLNAN-RNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
++|.++++++|+|++++| ++|+|+|.|||+|||++|+||+|+..++..+.+|.++
T Consensus 8 ~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~ 63 (77)
T 1ljo_A 8 QMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIV 63 (77)
T ss_dssp HHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEE
Confidence 458999999999999999 9999999999999999999999999877888999874
No 11
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.82 E-value=7.8e-20 Score=104.35 Aligned_cols=55 Identities=31% Similarity=0.555 Sum_probs=51.7
Q ss_pred hhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
++|.++++++|+|+|+||++|+|+|.|||+|||++|+||+|+..+...+.+|.++
T Consensus 18 ~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~ 72 (83)
T 1mgq_A 18 DALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVL 72 (83)
T ss_dssp HHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEE
Confidence 4589999999999999999999999999999999999999999888889999874
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.81 E-value=5.8e-20 Score=104.38 Aligned_cols=54 Identities=33% Similarity=0.551 Sum_probs=50.1
Q ss_pred hhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
++|.++++++|+|+|+||++|.|+|.|||+|||++|+||+|+ .+...+.+|.++
T Consensus 14 ~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~ 67 (81)
T 1i8f_A 14 ATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMV 67 (81)
T ss_dssp HHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEE
Confidence 358999999999999999999999999999999999999999 667788999875
No 13
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.80 E-value=1.5e-19 Score=108.72 Aligned_cols=56 Identities=34% Similarity=0.696 Sum_probs=44.2
Q ss_pred chhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecC-------CceeeeeEee
Q psy11512 6 PPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD-------NTVHNIGMVE 61 (62)
Q Consensus 6 ~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-------~~~~~lG~v~ 61 (62)
.++|.+|++++|+|+|+|||+|.|+|.|||+||||+|+||+|+..+ ...+.+|.|+
T Consensus 25 i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~ 87 (113)
T 4emk_C 25 ILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87 (113)
T ss_dssp -------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEE
Confidence 3569999999999999999999999999999999999999999764 3578899875
No 14
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.80 E-value=9.2e-20 Score=106.43 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=49.7
Q ss_pred chhHHhcCCCEEEEEECCC-eEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 6 PPELKKFMDKKVTLKLNAN-RNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 6 ~~~L~~~l~k~V~V~l~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
.++|.++++++|+|+|++| ++|+|+|.|||+|||++|+||+|+..++..+.+|.++
T Consensus 23 ~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~ 79 (93)
T 1n9r_A 23 KPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIF 79 (93)
T ss_dssp ---CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEE
Confidence 3568999999999999999 9999999999999999999999998777788888764
No 15
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=106.07 Aligned_cols=55 Identities=33% Similarity=0.453 Sum_probs=49.1
Q ss_pred hhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecC-------CceeeeeEee
Q psy11512 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD-------NTVHNIGMVE 61 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-------~~~~~lG~v~ 61 (62)
.+|.++++++|+|+|+|||+|.|+|.|||+||||+|+||+|+..+ ...+.+|.++
T Consensus 13 ~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~ 74 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVF 74 (96)
T ss_dssp HHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEE
T ss_pred HHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEE
Confidence 348999999999999999999999999999999999999999753 3467899875
No 16
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.79 E-value=5.9e-19 Score=102.85 Aligned_cols=57 Identities=25% Similarity=0.412 Sum_probs=49.6
Q ss_pred Cchh-HHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecC-------------CceeeeeEee
Q psy11512 5 HPPE-LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD-------------NTVHNIGMVE 61 (62)
Q Consensus 5 ~~~~-L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-------------~~~~~lG~v~ 61 (62)
.|.+ |+.+++++|+|++++|++|.|+|.|||+||||+|+||+|+... ...+.+|.++
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~ 79 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLF 79 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEE
Confidence 4666 5777999999999999999999999999999999999999752 2468899875
No 17
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.79 E-value=4e-19 Score=117.69 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=54.1
Q ss_pred CCCCCchhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEec----------CCceeeeeEee
Q psy11512 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRK----------DNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------~~~~~~lG~v~ 61 (62)
|+-....+|.+|++++|+|+|+|||+|+|+|.|||+||||+|+||+|+.. ..+.+.+|+|+
T Consensus 1 ~~v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~ 71 (231)
T 3pgw_B 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVL 71 (231)
T ss_pred CCcCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEE
Confidence 56666788999999999999999999999999999999999999999863 23678888875
No 18
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.76 E-value=4.8e-19 Score=103.31 Aligned_cols=56 Identities=27% Similarity=0.613 Sum_probs=50.6
Q ss_pred chh-HHhcCCCEEEEEE----CCCeEEEEEEEEecCccceEecceEEEe-cCCceeeeeEee
Q psy11512 6 PPE-LKKFMDKKVTLKL----NANRNVTGILRGFDPFMNLVLDEGVEYR-KDNTVHNIGMVE 61 (62)
Q Consensus 6 ~~~-L~~~l~k~V~V~l----~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~lG~v~ 61 (62)
|.+ |.++++++++|++ ++|++|+|+|.|||+||||+|+||+|+. .++..+++|.++
T Consensus 17 Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~ 78 (92)
T 3s6n_E 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78 (92)
T ss_dssp HHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEE
T ss_pred CHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEE
Confidence 555 7999999999999 9999999999999999999999999997 445678899875
No 19
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.76 E-value=2.1e-18 Score=104.21 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=51.8
Q ss_pred chhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 6 PPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 6 ~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
.++|.++++++|.|+|++|++|.|+|.+||+||||+|+||+|+..+++..++|.++
T Consensus 4 ~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~ 59 (119)
T 1b34_A 4 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS 59 (119)
T ss_dssp HHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEE
Confidence 45699999999999999999999999999999999999999998777788899874
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.76 E-value=2.7e-18 Score=102.20 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=44.4
Q ss_pred hhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCC-ceeeeeEee
Q psy11512 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDN-TVHNIGMVE 61 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~-~~~~lG~v~ 61 (62)
.+|.++++++|+|+|++|++|+|+|.|||+||||+|+||+|...++ ..+.+|.|+
T Consensus 19 ~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~ 74 (105)
T 4emh_A 19 TLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY 74 (105)
T ss_dssp -------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEE
T ss_pred HHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEE
Confidence 3489999999999999999999999999999999999999997665 578899875
No 21
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.75 E-value=6.3e-18 Score=103.38 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCCCCchh-HHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 1 MSKSHPPE-LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 1 m~~~~~~~-L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
||--.|.. |+++++++|.|+|++|++|+|+|.+||+|||++|+||+|+..+++..++|.|+
T Consensus 1 ~~~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~ 62 (126)
T 2y9a_D 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVY 62 (126)
T ss_dssp ---CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEE
T ss_pred CCcccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEE
Confidence 66555654 89999999999999999999999999999999999999998777788888874
No 22
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.73 E-value=2.6e-18 Score=104.03 Aligned_cols=45 Identities=31% Similarity=0.715 Sum_probs=42.1
Q ss_pred chh-HHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEec
Q psy11512 6 PPE-LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRK 50 (62)
Q Consensus 6 ~~~-L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~ 50 (62)
|.. |.++++++|+|++++||+|.|+|.|||+||||+|+||+|+..
T Consensus 29 Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~ 74 (121)
T 2fwk_A 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGF 74 (121)
T ss_dssp HHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC
T ss_pred cHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEe
Confidence 444 799999999999999999999999999999999999999984
No 23
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.69 E-value=5.1e-17 Score=97.90 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=40.1
Q ss_pred chh-HHhcC--CCEEEEEECCCeEEEEEEEEecCccceEecceEEEec
Q psy11512 6 PPE-LKKFM--DKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRK 50 (62)
Q Consensus 6 ~~~-L~~~l--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~ 50 (62)
|.. |.+++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|+..
T Consensus 28 Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~ 75 (118)
T 1b34_B 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWT 75 (118)
T ss_dssp HHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC--
T ss_pred hHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEe
Confidence 444 79999 5999999999999999999999999999999999863
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.65 E-value=2.3e-16 Score=96.87 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=46.1
Q ss_pred hhHHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEecCCceeeeeEee
Q psy11512 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lG~v~ 61 (62)
++|.++++++|.|+|+||++|.|+|.|||+|||++|+||+|+. .+++|.++
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----~~~lg~v~ 53 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----GEKFNRVF 53 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----CCEEEEEE
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----CCEeceEE
Confidence 5799999999999999999999999999999999999999973 36777764
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.08 E-value=3.2e-10 Score=65.48 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=40.4
Q ss_pred CCchhHHhcCCCEEEEEECCCeEEEEEEEEec-CccceEecce
Q psy11512 4 SHPPELKKFMDKKVTLKLNANRNVTGILRGFD-PFMNLVLDEG 45 (62)
Q Consensus 4 ~~~~~L~~~l~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~~ 45 (62)
..|.+|.++++|+|.|++.||++|+|+|.+|| ..+|++|.||
T Consensus 7 ~~p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred CCHHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec
Confidence 56889999999999999999999999999999 8999999998
No 26
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.36 E-value=0.00032 Score=39.42 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=31.1
Q ss_pred hHHhcC--CCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 8 ELKKFM--DKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 8 ~L~~~l--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
+|+.+. ..+|.|.|.+|-.+.|++.+||+|+=+.-.+
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 466666 7889999999999999999999998666543
No 27
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.34 E-value=0.00043 Score=38.42 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=28.4
Q ss_pred hcCCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 11 KFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 11 ~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
+--+.+|+|-|.||-.++|.+.|||+|+=+.-.+
T Consensus 22 r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 22 RLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp GGTTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 3456789999999999999999999998666444
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.26 E-value=0.00037 Score=38.87 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.1
Q ss_pred hHHhcC--CCEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 8 ELKKFM--DKKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 8 ~L~~~l--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
+|+.+. ..+|.|.|.+|..++|++.+||+|+=+.-+
T Consensus 13 ~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~ 50 (74)
T 2ylb_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKN 50 (74)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEES
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEEC
Confidence 366666 778999999999999999999999765543
No 29
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.05 E-value=0.00082 Score=38.21 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=29.0
Q ss_pred hHHhcC--CCEEEEEECCCeEEEEEEEEecCccceEe
Q psy11512 8 ELKKFM--DKKVTLKLNANRNVTGILRGFDPFMNLVL 42 (62)
Q Consensus 8 ~L~~~l--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL 42 (62)
+|+.+. ..+|+|-|.||-.+.|.+.+||+|+=+.-
T Consensus 11 fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 11 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 355444 77899999999999999999999986654
No 30
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.99 E-value=0.0015 Score=36.75 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=30.0
Q ss_pred HHhcC--CCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 9 LKKFM--DKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 9 L~~~l--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
|+.+. ..+|+|-|.||..+.|.+.+||+|+=+.-.+
T Consensus 16 Ln~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 16 LNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp HHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 55555 7889999999999999999999998666543
No 31
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.89 E-value=0.0014 Score=36.97 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=27.6
Q ss_pred hHHhcCC--CEEEEEECCCeEEEEEEEEecCccceE
Q psy11512 8 ELKKFMD--KKVTLKLNANRNVTGILRGFDPFMNLV 41 (62)
Q Consensus 8 ~L~~~l~--k~V~V~l~~g~~~~G~L~~~D~~mNlv 41 (62)
+|+.+.. .+|.|.|.+|..+.|.+.+||+|+=+.
T Consensus 12 fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 12 FLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 3555544 459999999999999999999997655
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.85 E-value=0.00094 Score=39.46 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=29.9
Q ss_pred hHHhcCCC--EEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 8 ELKKFMDK--KVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 8 ~L~~~l~k--~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
+|+.+..+ +|.|.|.+|-.++|++.+||+|+=+.-+.
T Consensus 13 fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC
Confidence 46666555 79999999999999999999998666543
No 33
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.22 E-value=0.0098 Score=36.07 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=31.8
Q ss_pred hHHhcCCCEEEEEECCCeEEEEEEEEecCccceEe--cceE
Q psy11512 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVL--DEGV 46 (62)
Q Consensus 8 ~L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL--~~~~ 46 (62)
....|+|..|.|+|+||..+.|++..+| --+|+| .+|.
T Consensus 6 ~~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~ 45 (125)
T 4a53_A 6 SVADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLAN 45 (125)
T ss_dssp CHHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETT
T ss_pred cHHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEeccccc
Confidence 4688999999999999999999999998 334555 7763
No 34
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.03 E-value=0.026 Score=32.35 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=36.3
Q ss_pred HhcCCCEEEEEECCCeEEEEEEEEec-CccceEecceEEEecC
Q psy11512 10 KKFMDKKVTLKLNANRNVTGILRGFD-PFMNLVLDEGVEYRKD 51 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~~ 51 (62)
..|+|++|.+.-+.+..|+|+|..+| +---+.|.|+..+-.+
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTE 51 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTE 51 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCT
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCc
Confidence 35899999999999999999999999 5678899998877433
No 35
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=95.99 E-value=0.01 Score=32.50 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=33.8
Q ss_pred CCCCCchh--HHhcCCCEEEEEECCCeEEEEEEEEecCccceEecceEEEe
Q psy11512 1 MSKSHPPE--LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYR 49 (62)
Q Consensus 1 m~~~~~~~--L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~ 49 (62)
|++.+-++ |..+.|++|-+.+.....|.|+|.-||+-. +.|.|++.+.
T Consensus 1 ~~~~~LLdktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 1 MGMESLLEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp ----CHHHHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT
T ss_pred CCchhHHHHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh
Confidence 44545444 899999999999999999999999999754 6678888774
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=95.26 E-value=0.024 Score=32.93 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=34.9
Q ss_pred HHhcCCCEEEEEECCCeEEEEEEEEec-CccceEecceEEEe
Q psy11512 9 LKKFMDKKVTLKLNANRNVTGILRGFD-PFMNLVLDEGVEYR 49 (62)
Q Consensus 9 L~~~l~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~~~e~~ 49 (62)
-..|+|++|.+.-+.+..|+|+|..+| +---+.|.|+..+-
T Consensus 14 ~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfG 55 (95)
T 2fb7_A 14 GTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFG 55 (95)
T ss_dssp --CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCS
T ss_pred cCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEec
Confidence 578999999999999999999999999 56778888877663
No 37
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=95.11 E-value=0.025 Score=35.11 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=27.2
Q ss_pred chhHHhcCCCEEEEEE----CCCeEEEEEEEEecCc
Q psy11512 6 PPELKKFMDKKVTLKL----NANRNVTGILRGFDPF 37 (62)
Q Consensus 6 ~~~L~~~l~k~V~V~l----~~g~~~~G~L~~~D~~ 37 (62)
+.++.+++|+.|.|++ .+.+.++|+|.++|+-
T Consensus 96 ~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 96 KDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 4458999999999999 4459999999999954
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=94.49 E-value=0.097 Score=29.71 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=33.5
Q ss_pred HhcCCCEEEEEECCCe-EEEEEEEEecCc-cceEecceE
Q psy11512 10 KKFMDKKVTLKLNANR-NVTGILRGFDPF-MNLVLDEGV 46 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~-~~~G~L~~~D~~-mNlvL~~~~ 46 (62)
.+|+|+.|.+..+++- .|.|.|..+|.. -||.|.+|.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 4799999999999998 999999999965 689999984
No 39
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=93.93 E-value=0.28 Score=32.17 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.5
Q ss_pred hcCCCEEEEEECCCeEEEEEEEEecCccceEecce
Q psy11512 11 KFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEG 45 (62)
Q Consensus 11 ~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 45 (62)
..+|++|+|...+|..+.|+..|+|+.-.|+++..
T Consensus 221 ~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 221 LTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp SSTTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred cccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 35799999998888999999999999999988643
No 40
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=93.26 E-value=0.3 Score=26.74 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=28.0
Q ss_pred HHhcC--CCEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 9 LKKFM--DKKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 9 L~~~l--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
|..++ ..+|.|+|.+|..+.|++.-+|.|.=+..+
T Consensus 14 lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~ 50 (70)
T 3hfo_A 14 VQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVD 50 (70)
T ss_dssp HHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEC
T ss_pred HHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEc
Confidence 45554 467999999999999999999988755543
No 41
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=92.97 E-value=0.24 Score=28.15 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHhcCCCEEEEEECCCeEEEEEEEEec-CccceEecc
Q psy11512 9 LKKFMDKKVTLKLNANRNVTGILRGFD-PFMNLVLDE 44 (62)
Q Consensus 9 L~~~l~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~ 44 (62)
|....+++|.+.+.++.++.|++.++| ...|+..++
T Consensus 24 l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~ 60 (85)
T 1y96_B 24 LLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQ 60 (85)
T ss_dssp HHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhh
Confidence 677889999999999999999999999 667887665
No 42
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=91.80 E-value=0.57 Score=25.72 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=28.1
Q ss_pred HHhcCC--CEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 9 LKKFMD--KKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 9 L~~~l~--k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
|.+|+. .+|.|+|.+|..+.|++.-+|.|.=+..+
T Consensus 16 lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~ 52 (72)
T 3hfn_A 16 LQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIAD 52 (72)
T ss_dssp HHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC
T ss_pred HHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEc
Confidence 566664 45889999999999999999988755544
No 43
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=86.37 E-value=1.5 Score=28.08 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=28.3
Q ss_pred cCCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 12 FMDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 12 ~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
.+|++|++...++..+.|+..|+|+.-.|+ +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 589999999988877999999999998888 53
No 44
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=84.12 E-value=2 Score=28.43 Aligned_cols=33 Identities=30% Similarity=0.608 Sum_probs=28.1
Q ss_pred hcCCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 11 KFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 11 ~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
.++|++|+|...+ ..+.|+..|+|+.-.|+++.
T Consensus 270 ~~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 270 NFINRPVKLIIGD-KEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTTTSEEEEEETT-EEEEEEEEEECTTSCEEEEE
T ss_pred hhcCCEEEEEECC-cEEEEEEEEECCCCeEEEEE
Confidence 4579999998765 58999999999999999864
No 45
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=82.39 E-value=1.3 Score=28.43 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.8
Q ss_pred CCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 13 MDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 13 l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
+|++|++...++ +.|+..|+|+.-.|+++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999987776 999999999999999864
No 46
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=80.74 E-value=6.3 Score=22.86 Aligned_cols=37 Identities=5% Similarity=0.229 Sum_probs=32.0
Q ss_pred HhcCCCEEEEEECCCe-EEEEEEEEecCccceEecceEE
Q psy11512 10 KKFMDKKVTLKLNANR-NVTGILRGFDPFMNLVLDEGVE 47 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~-~~~G~L~~~D~~mNlvL~~~~e 47 (62)
.+|+|+.|.|...+.- .|.|.+..+|. -+|+|.+|..
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 5899999999999875 99999999994 5588888763
No 47
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=80.06 E-value=3.3 Score=26.22 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=25.0
Q ss_pred hcCCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 11 KFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 11 ~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
..+|++|++ +| +.|+..|+|+.-.|+++.
T Consensus 191 ~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 191 HGMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hhcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 357899999 45 999999999999999864
No 48
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=79.69 E-value=1 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.5
Q ss_pred hcCCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 11 KFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 11 ~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
..+|++|++...++ +.|+..|+|+.-.|+++.
T Consensus 185 ~~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 185 LYLGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTTTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cccCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 34799999876554 999999999999999864
No 49
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=79.43 E-value=2.8 Score=28.02 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=27.3
Q ss_pred hcCCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 11 KFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 11 ~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
..+|++|+|... +..+.|+..|+|+.-.|++++
T Consensus 276 ~~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 276 NIWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SCSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hhcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 367999999865 467999999999999999863
No 50
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=78.27 E-value=4.3 Score=21.37 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCeEEEEEEEEecCc
Q psy11512 13 MDKKVTLKLNANRNVTGILRGFDPF 37 (62)
Q Consensus 13 l~k~V~V~l~~g~~~~G~L~~~D~~ 37 (62)
.|..|.+.-+||+.|-|+++.+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4678999999999999999999865
No 51
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=78.25 E-value=2.9 Score=24.05 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=15.4
Q ss_pred CEEEEEECCCeEEEEEE
Q psy11512 15 KKVTLKLNANRNVTGIL 31 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L 31 (62)
.+|+++|.||+.+.|++
T Consensus 29 ~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 29 ERVRIELDDGSMIAGTV 45 (101)
T ss_dssp CEEEEEETTSCEEEEEE
T ss_pred eEEEEEEcCCCeEeeee
Confidence 57999999999999996
No 52
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=72.68 E-value=2.9 Score=23.35 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.5
Q ss_pred hHHhcCCCEEEEEECCCeEEEEEE
Q psy11512 8 ELKKFMDKKVTLKLNANRNVTGIL 31 (62)
Q Consensus 8 ~L~~~l~k~V~V~l~~g~~~~G~L 31 (62)
++.-..+.++.|+++||..+.|+.
T Consensus 19 ElAc~~~~~l~l~l~dGe~~~g~a 42 (86)
T 1sg5_A 19 ELACQHHLMLTLELKDGEKLQAKA 42 (86)
T ss_dssp HHHHTTTTCEEEECTTTCCEEESS
T ss_pred HHHHHcCCeEEEEEeCCCEEEEEE
Confidence 466677899999999999999974
No 53
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=66.92 E-value=10 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=26.3
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecce
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDEG 45 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 45 (62)
..+.|.+.||+.+.+++.++|...+|.|=..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3688999999999999999999888775443
No 54
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=66.49 E-value=11 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.7
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecce
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDEG 45 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 45 (62)
.++.|.+.+|+.+.+++.+.|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999888776544
No 55
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=62.90 E-value=15 Score=20.74 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.4
Q ss_pred hHHhcCCCEEEEEECCCe----EEEEEEEEe
Q psy11512 8 ELKKFMDKKVTLKLNANR----NVTGILRGF 34 (62)
Q Consensus 8 ~L~~~l~k~V~V~l~~g~----~~~G~L~~~ 34 (62)
.|.+++|++|.++.+.|| +-+|+|...
T Consensus 19 ~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 19 EIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 488999999999999996 678998765
No 56
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=62.18 E-value=16 Score=19.62 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=22.6
Q ss_pred cCCCEEEEEECCCeEEEEEEEEecCc
Q psy11512 12 FMDKKVTLKLNANRNVTGILRGFDPF 37 (62)
Q Consensus 12 ~l~k~V~V~l~~g~~~~G~L~~~D~~ 37 (62)
-.|..|+..-.||+.|.|++..+++.
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccC
Confidence 35778888889999999999999964
No 57
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=59.25 E-value=15 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=21.6
Q ss_pred cCCCEEEEEECCCeEEEEEEEEec
Q psy11512 12 FMDKKVTLKLNANRNVTGILRGFD 35 (62)
Q Consensus 12 ~l~k~V~V~l~~g~~~~G~L~~~D 35 (62)
.+|.+|..+-++|+.|.|++.+..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 478899999999999999998876
No 58
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=58.75 E-value=20 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=22.2
Q ss_pred HhcCCCEEEEEECCCeEEEEEEEEecC
Q psy11512 10 KKFMDKKVTLKLNANRNVTGILRGFDP 36 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~~~~G~L~~~D~ 36 (62)
.=.++..|.++-+||+.|-|+++...+
T Consensus 15 ~~~~geDVL~rw~DG~fYLGtIVd~~~ 41 (69)
T 2xk0_A 15 TYALQEDVFIKCNDGRFYLGTIIDQTS 41 (69)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEECS
T ss_pred ccccCCeEEEEecCCCEEEEEEEecCC
Confidence 445788899999999999999966553
No 59
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=58.32 E-value=16 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.3
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
.++.|.+.+|+.+.+++.++|....|-|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEE
Confidence 368889999999999999999888776543
No 60
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=55.58 E-value=6.8 Score=21.76 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=23.6
Q ss_pred HhcCCCEEEEEECCCeEEEEEEEEecCc
Q psy11512 10 KKFMDKKVTLKLNANRNVTGILRGFDPF 37 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~~~~G~L~~~D~~ 37 (62)
.=..|.-|.++-+||+.|-|+++-+|..
T Consensus 26 ~f~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 26 RLWEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred eeccCCEEEEEecCCCEEeEEEEEeccC
Confidence 3356788999999999999999988864
No 61
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=55.11 E-value=15 Score=25.45 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=26.1
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecce
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDEG 45 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 45 (62)
..+.|.+.||+.+.+++.++|...+|-|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 3588999999999999999999888766543
No 62
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=53.59 E-value=19 Score=22.82 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=24.7
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
.++.|.+.+|+.+.+.+.+.|....|.|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEE
Confidence 468899999999999999999887776543
No 63
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=50.40 E-value=26 Score=22.69 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=25.6
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
..+.|.+.+|+.+.+++.++|...+|-|=.
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllk 93 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVR 93 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEE
Confidence 479999999999999999999887776543
No 64
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=49.96 E-value=31 Score=21.25 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=24.8
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
..+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll 105 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVL 105 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEE
Confidence 47889999999999999999988776653
No 65
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=49.73 E-value=32 Score=21.28 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 14 DKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 14 ~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
...+.|.+.+|+.+.+++.++|....|-|=.
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~ 116 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIK 116 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEE
Confidence 3578999999999999999999887766543
No 66
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=49.51 E-value=29 Score=22.48 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.3
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
..+.|.+.+|+.+.+++.++|...+|-|=.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 95 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLI 95 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEE
Confidence 368899999999999999999888876643
No 67
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=48.63 E-value=31 Score=22.45 Aligned_cols=30 Identities=13% Similarity=0.360 Sum_probs=25.2
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
..+.|.+.+|+.+.+++.++|....|-|=.
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk 100 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLR 100 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEE
Confidence 478899999999999999999877776543
No 68
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=48.56 E-value=30 Score=23.77 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=23.4
Q ss_pred hhHHhcCCCEEEEEECC----------C-eEEEEEEEEec
Q psy11512 7 PELKKFMDKKVTLKLNA----------N-RNVTGILRGFD 35 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~~----------g-~~~~G~L~~~D 35 (62)
.++..++++++.|.+.. . +.+.|.+..+.
T Consensus 56 l~l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~ 95 (491)
T 2p5z_X 56 IAPESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFK 95 (491)
T ss_dssp CCGGGTTTCEEEEEECC----------CCEEEEEEEEEEE
T ss_pred CCHHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEE
Confidence 45788999999999942 2 88999988775
No 69
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=46.30 E-value=16 Score=23.12 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=20.5
Q ss_pred HhcCCCEEEEEECCCeEEEEEEEE
Q psy11512 10 KKFMDKKVTLKLNANRNVTGILRG 33 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~~~~G~L~~ 33 (62)
...+|..|+|++.+|+.+.|+..+
T Consensus 167 ~G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 167 NAAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CBCTTSEEEEEETTSCEEEEEECT
T ss_pred ccCCCCEEEEECCCCCEEEEEEec
Confidence 456889999999999999999754
No 70
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=46.16 E-value=19 Score=15.49 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=12.6
Q ss_pred EecceEEEecCCceeeeeEeeC
Q psy11512 41 VLDEGVEYRKDNTVHNIGMVEE 62 (62)
Q Consensus 41 vL~~~~e~~~~~~~~~lG~v~~ 62 (62)
+|.|+.|. ++..+.+|.|+|
T Consensus 5 vlgdviev--ggklkvlgdvie 24 (25)
T 3sgr_A 5 VLGDVIEV--GGKLKVLGDVIE 24 (26)
T ss_dssp EEEEEEEE--TTEEEEEEEEEE
T ss_pred Eeeeeeee--CcEEEEeeeEEe
Confidence 45556655 456677887775
No 71
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=41.82 E-value=40 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=24.9
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
..+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlL 105 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVL 105 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEE
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEE
Confidence 56889999999999999999988776654
No 72
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=41.32 E-value=47 Score=21.37 Aligned_cols=29 Identities=10% Similarity=0.377 Sum_probs=24.2
Q ss_pred HhcCCCEEEEEECCCeEEEEEEEEecCcc
Q psy11512 10 KKFMDKKVTLKLNANRNVTGILRGFDPFM 38 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~~~~G~L~~~D~~m 38 (62)
.+++|+.+...+.+|..+.|.++-..-|+
T Consensus 21 ~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 21 RAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 78999999999999999999987665553
No 73
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=40.56 E-value=58 Score=21.11 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.1
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
..+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL 98 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALI 98 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEE
Confidence 57899999999999999999988777654
No 74
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.33 E-value=1.5 Score=25.29 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.9
Q ss_pred EEEEEEecCccceEecceE
Q psy11512 28 TGILRGFDPFMNLVLDEGV 46 (62)
Q Consensus 28 ~G~L~~~D~~mNlvL~~~~ 46 (62)
.|++.+||.--|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4678999999999999987
No 75
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=40.06 E-value=47 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.0
Q ss_pred cCCCEEEEEECCCeEEEEEEEEec
Q psy11512 12 FMDKKVTLKLNANRNVTGILRGFD 35 (62)
Q Consensus 12 ~l~k~V~V~l~~g~~~~G~L~~~D 35 (62)
..|..|.|+-.||..|.|++.|.-
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEeEEEeeee
Confidence 357889999999999999998874
No 76
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=39.15 E-value=16 Score=20.47 Aligned_cols=22 Identities=23% Similarity=0.601 Sum_probs=17.5
Q ss_pred CCEEEEEECCC---eEEEEEEEEec
Q psy11512 14 DKKVTLKLNAN---RNVTGILRGFD 35 (62)
Q Consensus 14 ~k~V~V~l~~g---~~~~G~L~~~D 35 (62)
++.|.|.+.-| .+++|+|.|.|
T Consensus 2 ~~~~~V~F~~G~~~a~v~G~I~g~~ 26 (111)
T 4g9s_B 2 GKNVNVEFRKGHSSAQYSGEIKGYD 26 (111)
T ss_dssp CCEEECCCCTTCSEEEEEEEEETTC
T ss_pred CcceEEEECCCCCCeEEEEEEeCCC
Confidence 56788888655 78999999977
No 77
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=38.47 E-value=37 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=24.0
Q ss_pred CEEEEEEC-CCeEEEEEEEEecCccceEec
Q psy11512 15 KKVTLKLN-ANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 15 k~V~V~l~-~g~~~~G~L~~~D~~mNlvL~ 43 (62)
..|.|.+. ||+++.+++++.|....|-|=
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvL 126 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALL 126 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEE
Confidence 35788885 899999999999988877654
No 78
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=38.05 E-value=26 Score=20.03 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=15.7
Q ss_pred CCCCCc----hhHHhcCCCEEEEEE
Q psy11512 1 MSKSHP----PELKKFMDKKVTLKL 21 (62)
Q Consensus 1 m~~~~~----~~L~~~l~k~V~V~l 21 (62)
|+...| ..|.+|.+++|++.-
T Consensus 1 m~~~tpRVn~~~L~~~~g~~VrivG 25 (114)
T 4gop_A 1 MEKPTPLINSSMLGQYVGQTVRIVG 25 (114)
T ss_dssp CCCCCCEECTTTGGGGTTSEEEEEE
T ss_pred CCCCCceECHHHHHhhCCCeEEEEE
Confidence 565554 459999999998764
No 79
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=33.71 E-value=34 Score=17.97 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=16.5
Q ss_pred EEEEEECCCeEEEEEEEEec
Q psy11512 16 KVTLKLNANRNVTGILRGFD 35 (62)
Q Consensus 16 ~V~V~l~~g~~~~G~L~~~D 35 (62)
+|.|++.||..+.+++..-|
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~ 28 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASN 28 (84)
T ss_dssp EEEEECTTSCEEEEEEETTS
T ss_pred EEEEECCCCCEEEEEeCCCC
Confidence 68888999999999886544
No 80
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=32.88 E-value=30 Score=20.05 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.6
Q ss_pred hhHHhcCCCEEEEEE
Q psy11512 7 PELKKFMDKKVTLKL 21 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l 21 (62)
..|.+|.|++|++.-
T Consensus 15 s~L~~fvgk~VrivG 29 (121)
T 3kdf_A 15 GMLAQFIDKPVCFVG 29 (121)
T ss_dssp GGGGGGTTCEEEEEE
T ss_pred HHHHhhCCCeEEEEE
Confidence 458999999999874
No 81
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=32.23 E-value=8.9 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCEEEEEECCCeEEEEEEEEecCc
Q psy11512 14 DKKVTLKLNANRNVTGILRGFDPF 37 (62)
Q Consensus 14 ~k~V~V~l~~g~~~~G~L~~~D~~ 37 (62)
.++|.-.+++|+.++..|.|.|.|
T Consensus 398 ~~~v~~Vi~~G~vv~~~l~g~~G~ 421 (426)
T 3mkv_A 398 GEHIPLVMKDGRLFVNELEGHEGH 421 (426)
T ss_dssp STTCCEEEETTEEEEECCC-----
T ss_pred CCCccEEEECCEEEECCccCCCCC
Confidence 345777789999999999988865
No 82
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=31.96 E-value=46 Score=22.29 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=20.0
Q ss_pred HhcCCCEEEEEECCCeEEEEEEEE
Q psy11512 10 KKFMDKKVTLKLNANRNVTGILRG 33 (62)
Q Consensus 10 ~~~l~k~V~V~l~~g~~~~G~L~~ 33 (62)
..+.+++|+|..++|..+.|++-.
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCCEEEEEEeC
Confidence 557889999999999999998743
No 83
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.91 E-value=63 Score=17.31 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.8
Q ss_pred CCCEEEEEECCCeEEEEEEEEecCc
Q psy11512 13 MDKKVTLKLNANRNVTGILRGFDPF 37 (62)
Q Consensus 13 l~k~V~V~l~~g~~~~G~L~~~D~~ 37 (62)
.+..|...=+||..|-|++.-+|.+
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 4677888889999999999999954
No 84
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=31.71 E-value=42 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=18.7
Q ss_pred HhcCCCEEEEE-ECCCeEEEEEEEE
Q psy11512 10 KKFMDKKVTLK-LNANRNVTGILRG 33 (62)
Q Consensus 10 ~~~l~k~V~V~-l~~g~~~~G~L~~ 33 (62)
....|..|+|+ +.+|+.+.|+..+
T Consensus 236 nGa~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 236 NGYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp CBCTTCEEEEEC--CCCEEEEEEET
T ss_pred cCCCCCEEEEEECCCCCEEEEEEec
Confidence 45789999999 9999999999753
No 85
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=31.38 E-value=31 Score=20.62 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=21.5
Q ss_pred hhHHhcCCCEEEEEEC------CCeEEEEEEEEecC-ccceEec
Q psy11512 7 PELKKFMDKKVTLKLN------ANRNVTGILRGFDP-FMNLVLD 43 (62)
Q Consensus 7 ~~L~~~l~k~V~V~l~------~g~~~~G~L~~~D~-~mNlvL~ 43 (62)
..|.+|.|++|++..+ +|..+. |.+-|. -..+.|.
T Consensus 36 s~L~~fvGk~VriVGkV~~~~~~G~~~~--l~s~Dg~~VtV~l~ 77 (142)
T 2pi2_E 36 GMLAQFIDKPVCFVGRLEKIHPTGKMFI--LSDGEGKNGTIELM 77 (142)
T ss_dssp GGGGGSTTCEEEEEEEEEEECTTSSEEE--EECTTSCEEEEECS
T ss_pred HHHHhhCCCEEEEEEEEeEEcCCCCEEE--EEeCCCcEEEEEeC
Confidence 3489999999998752 565553 344442 3444443
No 86
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.09 E-value=59 Score=17.16 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=21.5
Q ss_pred CCCEEEEEECCCeEEEEEEEEecCc
Q psy11512 13 MDKKVTLKLNANRNVTGILRGFDPF 37 (62)
Q Consensus 13 l~k~V~V~l~~g~~~~G~L~~~D~~ 37 (62)
.+.-|...=+||+.|-|++.-+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 4677888889999999999999954
No 87
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=30.76 E-value=42 Score=22.33 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=25.2
Q ss_pred CCchhHHhcCCCEEEEEECCCeEEEEEEE
Q psy11512 4 SHPPELKKFMDKKVTLKLNANRNVTGILR 32 (62)
Q Consensus 4 ~~~~~L~~~l~k~V~V~l~~g~~~~G~L~ 32 (62)
.+|..|.+++=+++.|.+.||....|.+=
T Consensus 179 ~~P~~l~DlvWrpa~l~l~dG~~~~g~iP 207 (273)
T 1zbp_A 179 KSATSLLESVWRPVEFDIDGLGEGEGHMP 207 (273)
T ss_dssp CCCCSSGGGTEEEEEEEETTTEEEEEEEE
T ss_pred cCCCcHHHhhccccEEEEecCCeeEEEee
Confidence 35677899999999999999999999874
No 88
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.65 E-value=57 Score=16.44 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=22.6
Q ss_pred HHhcCCCEEEEEE-CCCeEEEEEEEEecC
Q psy11512 9 LKKFMDKKVTLKL-NANRNVTGILRGFDP 36 (62)
Q Consensus 9 L~~~l~k~V~V~l-~~g~~~~G~L~~~D~ 36 (62)
..=-.|..+..+. .||..|++++.+++.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcC
Confidence 3445677888888 599999999999985
No 89
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=26.42 E-value=64 Score=17.98 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=17.2
Q ss_pred CCEEEEEECCCeEEEEEEEEe
Q psy11512 14 DKKVTLKLNANRNVTGILRGF 34 (62)
Q Consensus 14 ~k~V~V~l~~g~~~~G~L~~~ 34 (62)
..+|.|++-||..+.+++..-
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~ 33 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSD 33 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEeCCC
Confidence 457899999999999998543
No 90
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=25.97 E-value=49 Score=18.58 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=17.6
Q ss_pred ECCCeEEEEEEEEecCccce
Q psy11512 21 LNANRNVTGILRGFDPFMNL 40 (62)
Q Consensus 21 l~~g~~~~G~L~~~D~~mNl 40 (62)
|+-|-.|+|+|.++=+|.+=
T Consensus 45 LkPGvtYegQLisV~r~g~~ 64 (89)
T 1q38_A 45 LKPGVVYEGQLISIQQYGHQ 64 (89)
T ss_dssp CCTTCCEEEEEEEECTTSCC
T ss_pred cCCCcEEEEEEEeeeecccC
Confidence 68899999999999988764
No 91
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=25.34 E-value=73 Score=17.11 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=19.2
Q ss_pred CCCEEEEEECCCeEEEEEEEEec
Q psy11512 13 MDKKVTLKLNANRNVTGILRGFD 35 (62)
Q Consensus 13 l~k~V~V~l~~g~~~~G~L~~~D 35 (62)
-+..|+|++.++..+.|.+..|.
T Consensus 73 Pd~~I~VEI~~~~~~isv~~~y~ 95 (98)
T 2dir_A 73 PQYTVVVEIIKAVCCLSVVKSGP 95 (98)
T ss_dssp CSEEEEEEEETTEEEEEEEECCC
T ss_pred CCEEEEEEEeCCEEEEEEccccc
Confidence 35679999999999999998765
No 92
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=24.71 E-value=27 Score=21.87 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=23.6
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
..+.|.+.+|+.+..++.++|....|-|=
T Consensus 80 ~~i~V~~~~g~~~~a~vv~~d~~~DlAll 108 (239)
T 1l1j_A 80 DNITVTMLDGSKYDAEYIGGDEELDIAVI 108 (239)
T ss_dssp SSCEEECTTSCEEEBCCCEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEE
Confidence 35788889999999999999987776553
No 93
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=24.61 E-value=73 Score=20.82 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.0
Q ss_pred CeEEEEEEEEecCccceEec
Q psy11512 24 NRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 24 g~~~~G~L~~~D~~mNlvL~ 43 (62)
+..+.|.+.-+|.|-|++..
T Consensus 171 ~~~i~g~V~~iD~FGN~iTn 190 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILN 190 (259)
T ss_dssp TTEEEEEEEEECTTCCEEES
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45689999999999999754
No 94
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.17 E-value=94 Score=16.43 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=21.1
Q ss_pred CCCEEEEEECCCeEEEEEEEEecC
Q psy11512 13 MDKKVTLKLNANRNVTGILRGFDP 36 (62)
Q Consensus 13 l~k~V~V~l~~g~~~~G~L~~~D~ 36 (62)
.|..+.-+-.||..|.+++.+++.
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~ 35 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINK 35 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEEST
T ss_pred CCCEEEEECCCCCEEEEEEEEECC
Confidence 477888888899999999999986
No 95
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=23.09 E-value=1.2e+02 Score=17.83 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=20.5
Q ss_pred CEEEEEECCCeEEEEEEEEecCccceEe
Q psy11512 15 KKVTLKLNANRNVTGILRGFDPFMNLVL 42 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D~~mNlvL 42 (62)
..+.|.+ +|+.+..++. .|.-..|.|
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAl 68 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAF 68 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEE
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEE
Confidence 4678888 9999999999 887665544
No 96
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=22.84 E-value=78 Score=20.71 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.7
Q ss_pred CeEEEEEEEEecCccceEec
Q psy11512 24 NRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 24 g~~~~G~L~~~D~~mNlvL~ 43 (62)
+..+.|.+.-+|.|-|++..
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45689999999999999643
No 97
>3sz6_A Conserved domain protein; IG fold, hemophore, heme-binding protein; 1.80A {Bacillus anthracis} PDB: 3sik_A*
Probab=22.63 E-value=88 Score=17.94 Aligned_cols=24 Identities=8% Similarity=0.397 Sum_probs=18.7
Q ss_pred CchhHHhcCCCEEEEEECCCeEEE
Q psy11512 5 HPPELKKFMDKKVTLKLNANRNVT 28 (62)
Q Consensus 5 ~~~~L~~~l~k~V~V~l~~g~~~~ 28 (62)
.++-...|+.++-.|..+||+.+.
T Consensus 26 e~Sma~~Y~~~pa~v~vknGk~~v 49 (121)
T 3sz6_A 26 ESSRMNRYFESPATLTVKNGKQYV 49 (121)
T ss_dssp SBCGGGGGBCSSEEEEEETTEEEE
T ss_pred ccchhhhhccCCEEEEEECCEEEE
Confidence 345578999999999999986544
No 98
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=22.45 E-value=66 Score=18.44 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=17.2
Q ss_pred CEEEEEECCCeEEEEEEEEec
Q psy11512 15 KKVTLKLNANRNVTGILRGFD 35 (62)
Q Consensus 15 k~V~V~l~~g~~~~G~L~~~D 35 (62)
-+|.|++-||..+.+++..-|
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~ 64 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQA 64 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 468888899999999986654
No 99
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=22.13 E-value=56 Score=22.92 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCEEEEEECCC---eEEEEEEEE-e----cCccceEecceEEE
Q psy11512 13 MDKKVTLKLNAN---RNVTGILRG-F----DPFMNLVLDEGVEY 48 (62)
Q Consensus 13 l~k~V~V~l~~g---~~~~G~L~~-~----D~~mNlvL~~~~e~ 48 (62)
.+.+|+|+.++| ..|+|+|.- . |++.=|-|+|-+..
T Consensus 14 ~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~gyn~ 57 (438)
T 1zq1_A 14 VGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGYNI 57 (438)
T ss_dssp TTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETTSCEE
T ss_pred CCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccCCcee
Confidence 489999999998 899999983 3 36666666665543
No 100
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=21.76 E-value=82 Score=17.54 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.4
Q ss_pred hHHhcCCCEEEEEECCCeEEEEEEEEec
Q psy11512 8 ELKKFMDKKVTLKLNANRNVTGILRGFD 35 (62)
Q Consensus 8 ~L~~~l~k~V~V~l~~g~~~~G~L~~~D 35 (62)
+-..|+||+|.-.-+.|+.+-|++.---
T Consensus 34 ~a~fylGKrvayv~~~g~~iwGKVtr~H 61 (87)
T 3j21_c 34 EASKLIGRLVLWKSPSGKILKGKIVRVH 61 (87)
T ss_dssp HHGGGTTCEEEECCSSSCCEEEEEEEEC
T ss_pred HHHhhcCceEEEEeCCCCEEEEEEEeee
Confidence 4678999999998899999999986543
No 101
>2k78_A Iron-regulated surface determinant protein C; NEAT domain, complex, heme, ISD, ISDC, cell WALL, metal-binding, peptidoglycan-anchor; HET: ZNH; NMR {Staphylococcus aureus}
Probab=20.95 E-value=86 Score=18.84 Aligned_cols=39 Identities=3% Similarity=0.006 Sum_probs=25.5
Q ss_pred chhHHhcCCCEEEEEECCCeEE-EEEEEEecCccceEecc
Q psy11512 6 PPELKKFMDKKVTLKLNANRNV-TGILRGFDPFMNLVLDE 44 (62)
Q Consensus 6 ~~~L~~~l~k~V~V~l~~g~~~-~G~L~~~D~~mNlvL~~ 44 (62)
++-...|+.++..+..+||+.+ .=+|..-+=.-++.++.
T Consensus 43 ~Sman~Y~~kPA~v~VknGk~~v~~Tl~~s~wik~fkv~~ 82 (147)
T 2k78_A 43 TSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEG 82 (147)
T ss_dssp CCSGGGSCCSSEEEEECSSCEEEEEEEECTTTEEEEEETT
T ss_pred cchhhhcccCCEEEEEECCEEEEEEEEcCccceeeEEEcC
Confidence 4447899999999999998554 44555433334444443
No 102
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=20.95 E-value=89 Score=17.27 Aligned_cols=22 Identities=14% Similarity=-0.084 Sum_probs=17.7
Q ss_pred CCEEEEEECCCeEEEEEEEEec
Q psy11512 14 DKKVTLKLNANRNVTGILRGFD 35 (62)
Q Consensus 14 ~k~V~V~l~~g~~~~G~L~~~D 35 (62)
..+|.|++-||..+..++..-|
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~ 44 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSW 44 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSS
T ss_pred cEEEEEECCCCCEEEEEeCCCC
Confidence 3578888899999999987655
No 103
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=20.73 E-value=1.1e+02 Score=16.23 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=28.8
Q ss_pred HHhcCCCEEEEEECCCeEEEEEEEEecCccceEec
Q psy11512 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLD 43 (62)
Q Consensus 9 L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 43 (62)
|.+..+.++.+...+-..++|.+.-+++.+=+-+.
T Consensus 44 Ld~~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~ 78 (84)
T 1o9y_A 44 VTGISPGHATLCHGEQVVAEGELVDVEGRLGLQIT 78 (84)
T ss_dssp ECSSCTTEEEEEETTEEEEEEEEEEETTEEEEEEE
T ss_pred eCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEE
Confidence 56677889999999999999999999986655543
No 104
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=20.45 E-value=1.2e+02 Score=16.63 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=30.4
Q ss_pred HHhcCCCEEEEEECCCeEEEEEEEEecCccceEecc
Q psy11512 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDE 44 (62)
Q Consensus 9 L~~~l~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 44 (62)
|.+..+.+|.|...+-..++|.+.-+|+.+=+-+.+
T Consensus 48 Ld~~~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~ 83 (96)
T 3uep_A 48 LTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIER 83 (96)
T ss_dssp EEEESSCEEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEEEEEEEE
Confidence 566678899999999999999999999877776554
No 105
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=20.35 E-value=1.1e+02 Score=16.07 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=21.7
Q ss_pred CCCEEEEEECCCeEEEEEEEEecCc
Q psy11512 13 MDKKVTLKLNANRNVTGILRGFDPF 37 (62)
Q Consensus 13 l~k~V~V~l~~g~~~~G~L~~~D~~ 37 (62)
+|.+|..+-.|++.|.+++.+++.-
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 5778888889999999999999964
No 106
>1yr1_A Divib, FTSQ, cell-division initiation protein; divisome, cell cycle; NMR {Geobacillus stearothermophilus} PDB: 2alj_A
Probab=20.25 E-value=18 Score=20.63 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=18.8
Q ss_pred CCEEEEEECCCeEEEEEEEEecC
Q psy11512 14 DKKVTLKLNANRNVTGILRGFDP 36 (62)
Q Consensus 14 ~k~V~V~l~~g~~~~G~L~~~D~ 36 (62)
..+|.+.++||.++.|.+..|.+
T Consensus 80 ~~~i~L~M~DGn~V~~~i~~~~~ 102 (119)
T 1yr1_A 80 EDRVIVYMNDGYEVSATIRQFAD 102 (119)
T ss_dssp TTEEEEECTTSCEEEEESSSHHH
T ss_pred CCeEEEEEcCCcEEEEEHHHHHH
Confidence 45899999999999998866643
No 107
>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102}
Probab=20.19 E-value=89 Score=17.94 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=13.9
Q ss_pred CCEEEEEECCCeEEEEE
Q psy11512 14 DKKVTLKLNANRNVTGI 30 (62)
Q Consensus 14 ~k~V~V~l~~g~~~~G~ 30 (62)
...++|++++|++++.+
T Consensus 55 k~v~ri~t~~G~~i~~T 71 (139)
T 2keq_A 55 QEVFEYCLEDGSLIRAT 71 (139)
T ss_dssp EEEEEEEETTCCEEEEE
T ss_pred ceEEEEEECCCCEEEEe
Confidence 34578899999999877
Done!