Your job contains 1 sequence.
>psy11512
MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV
EE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11512
(62 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 231 2.5e-19 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 231 2.5e-19 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 221 2.8e-18 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 221 2.8e-18 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 221 2.8e-18 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 221 2.8e-18 1
UNIPROTKB|A8MWD9 - symbol:A8MWD9 "Small nuclear ribonucle... 216 9.5e-18 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 209 5.3e-17 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 179 7.9e-14 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 178 1.0e-13 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 150 9.4e-11 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 149 1.2e-10 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 148 1.5e-10 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 148 1.5e-10 1
SGD|S000002965 - symbol:SMX2 "Core Sm protein Sm G" speci... 148 1.5e-10 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 136 2.9e-09 1
TAIR|locus:2056825 - symbol:EMB2816 "AT2G03870" species:3... 127 2.6e-08 1
UNIPROTKB|Q9UK45 - symbol:LSM7 "U6 snRNA-associated Sm-li... 124 5.3e-08 1
ASPGD|ASPL0000056132 - symbol:AN0767 species:162425 "Emer... 123 6.8e-08 1
ZFIN|ZDB-GENE-030131-8284 - symbol:lsm7 "LSM7 homolog, U6... 123 6.8e-08 1
UNIPROTKB|G4NLE3 - symbol:MGG_02938 "Uncharacterized prot... 117 2.9e-07 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 114 6.1e-07 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 114 6.1e-07 1
FB|FBgn0261068 - symbol:LSm7 species:7227 "Drosophila mel... 113 7.8e-07 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 109 2.1e-06 1
GENEDB_PFALCIPARUM|PFL0460w - symbol:PFL0460w "u6 snRNA-a... 104 7.0e-06 1
UNIPROTKB|Q8I5V6 - symbol:PFL0460w "Lsm7 homologue, putat... 104 7.0e-06 1
DICTYBASE|DDB_G0289499 - symbol:lsm7 "putative U6 small n... 101 1.5e-05 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 98 3.0e-05 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 89 0.00027 1
WB|WBGene00003080 - symbol:lsm-6 species:6239 "Caenorhabd... 89 0.00027 1
TAIR|locus:2011246 - symbol:LSM1A "SM-like 1A" species:37... 86 0.00057 1
GENEDB_PFALCIPARUM|PF14_0411 - symbol:PF14_0411 "small nu... 84 0.00093 1
UNIPROTKB|Q8IL38 - symbol:PF14_0411 "Small nuclear ribonu... 84 0.00093 1
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+HPPE+KK+MDK++ LKLN R VTGILRGFDPFMN+VLD+ VE KDNT +NIGMV
Sbjct: 1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMV 60
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 42/59 (71%), Positives = 51/59 (86%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGM 59
MSK+HPPELKK+MDK++ LKLN NR V+GILRGFDPFMN+V+DE VEY+KD N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGM 59
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 43/60 (71%), Positives = 49/60 (81%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+HPPELKKFMDKK++LKLN R+V GILRGFDPFMNLV+DE VE +NIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 43/60 (71%), Positives = 49/60 (81%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+HPPELKKFMDKK++LKLN R+V GILRGFDPFMNLV+DE VE +NIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 43/60 (71%), Positives = 49/60 (81%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+HPPELKKFMDKK++LKLN R+V GILRGFDPFMNLV+DE VE +NIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 43/60 (71%), Positives = 49/60 (81%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+HPPELKKFMDKK++LKLN R+V GILRGFDPFMNLV+DE VE +NIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>UNIPROTKB|A8MWD9 [details] [associations]
symbol:A8MWD9 "Small nuclear ribonucleoprotein G-like
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC012318 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 EMBL:CK005235
IPI:IPI00745343 UniGene:Hs.631639 ProteinModelPortal:A8MWD9
SMR:A8MWD9 STRING:A8MWD9 PaxDb:A8MWD9 PRIDE:A8MWD9
neXtProt:NX_A8MWD9 InParanoid:A8MWD9 OrthoDB:EOG4BRWND
ArrayExpress:A8MWD9 Bgee:A8MWD9 Genevestigator:A8MWD9
Uniprot:A8MWD9
Length = 76
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 43/61 (70%), Positives = 47/61 (77%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+HPPELKKF DKK +LKLN R+V GILRGFDPFMNLV+DE VE NIGMV
Sbjct: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 61 E 61
E
Sbjct: 61 E 61
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MS++HPPELKKFMDKK++LKLN R+V GILRGFDPFMNLV+D+ +E ++ IGMV
Sbjct: 1 MSEAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMV 60
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 39/61 (63%), Positives = 46/61 (75%)
Query: 1 MSKS-HPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGM 59
MS+S PP+LKK+MDKK+ +KLNANR VTG LRGFD FMNLV+D VE N +IGM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVN-GNDKTDIGM 59
Query: 60 V 60
V
Sbjct: 60 V 60
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 38/61 (62%), Positives = 46/61 (75%)
Query: 1 MSKS-HPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGM 59
MS+S PP+LKK+MDKK+ +KLNANR V G LRGFD FMNLV+D VE D+ +IGM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKT-DIGM 59
Query: 60 V 60
V
Sbjct: 60 V 60
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 29/54 (53%), Positives = 38/54 (70%)
Query: 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
PELKK+M+K+V +LN NR V G+LRG+D FMN+VLDE E + IGM+
Sbjct: 6 PELKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEAFEEKPGGEKVAIGMI 59
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 1 MSKSHPP-ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGM 59
+ K+ P + +KFM+K++ + LN NR V GILRG+D FMNLVLD +E +KD + +IG+
Sbjct: 5 VGKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQI-DIGV 63
Query: 60 V 60
V
Sbjct: 64 V 64
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/58 (51%), Positives = 37/58 (63%)
Query: 3 KSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
K P+L K +DKK+ +KLN NR V GILRGFD FMN+ L + VE + IGMV
Sbjct: 5 KQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMV 62
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/60 (45%), Positives = 44/60 (73%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+ P+LKK++D++V ++LN +R V G+LRG+D F+N+VL++ +E + D IG V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
>SGD|S000002965 [details] [associations]
symbol:SMX2 "Core Sm protein Sm G" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] SGD:S000002965 INTERPRO:IPR001163 EMBL:D50617
EMBL:BK006940 GO:GO:0005682 GO:GO:0003723 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z46255 GO:GO:0046540
GO:GO:0071004 EMBL:M20880 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000223546
KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
OrthoDB:EOG4XWK7N EMBL:L31794 EMBL:AY558463 PIR:S48322
RefSeq:NP_116636.1 ProteinModelPortal:P40204 SMR:P40204
DIP:DIP-6683N IntAct:P40204 MINT:MINT-613464 STRING:P40204
PaxDb:P40204 EnsemblFungi:YFL017W-A GeneID:850528
KEGG:sce:YFL017W-A CYGD:YFL017w-a NextBio:966271
Genevestigator:P40204 GermOnline:YFL017W-A Uniprot:P40204
Length = 77
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHN 56
PELKK+MDKK+ L +N +R V GILRG+D F+N+VLD+ +E ++ +N
Sbjct: 5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANN 54
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
PELKK++DKKV ++LN +R V G++RG+D F+N+VL++ E + IG V
Sbjct: 6 PELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEEKDGGEKVKIGTV 59
>TAIR|locus:2056825 [details] [associations]
symbol:EMB2816 "AT2G03870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GenomeReviews:CT485783_GR InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O29386 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
EMBL:AC007196 EMBL:BT003087 EMBL:AK227358 IPI:IPI00526989
PIR:B84453 RefSeq:NP_178480.1 RefSeq:NP_849931.1 UniGene:At.41365
ProteinModelPortal:Q9SI54 SMR:Q9SI54 IntAct:Q9SI54 STRING:Q9SI54
PaxDb:Q9SI54 PRIDE:Q9SI54 ProMEX:Q9SI54 DNASU:814913
EnsemblPlants:AT2G03870.1 EnsemblPlants:AT2G03870.2 GeneID:814913
KEGG:ath:AT2G03870 TAIR:At2g03870 InParanoid:Q9SI54
PhylomeDB:Q9SI54 ProtClustDB:CLSN2683856 ArrayExpress:Q9SI54
Genevestigator:Q9SI54 Uniprot:Q9SI54
Length = 99
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDN 52
+L KF+DK V +KL R VTG L+G+D +NLVLDE VE+ +D+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDH 54
>UNIPROTKB|Q9UK45 [details] [associations]
symbol:LSM7 "U6 snRNA-associated Sm-like protein LSm7"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182293 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0030529 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 EMBL:AC005258 EMBL:BC018621
IPI:IPI00007163 RefSeq:NP_057283.1 UniGene:Hs.512610
ProteinModelPortal:Q9UK45 SMR:Q9UK45 DIP:DIP-31129N IntAct:Q9UK45
MINT:MINT-1036641 STRING:Q9UK45 PhosphoSite:Q9UK45 DMDM:10720075
PaxDb:Q9UK45 PRIDE:Q9UK45 DNASU:51690 Ensembl:ENST00000252622
GeneID:51690 KEGG:hsa:51690 UCSC:uc002lvp.4 CTD:51690
GeneCards:GC19M002321 HGNC:HGNC:20470 HPA:HPA041850 MIM:607287
neXtProt:NX_Q9UK45 PharmGKB:PA134888612 HOGENOM:HOG000223548
HOVERGEN:HBG000513 OrthoDB:EOG4GB77F GenomeRNAi:51690 NextBio:55694
Bgee:Q9UK45 CleanEx:HS_LSM7 Genevestigator:Q9UK45
GermOnline:ENSG00000130332 Uniprot:Q9UK45
Length = 103
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
+L K++DK + +K R +GIL+GFDP +NLVLD +EY +D
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>ASPGD|ASPL0000056132 [details] [associations]
symbol:AN0767 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACD01000012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
RefSeq:XP_658371.1 ProteinModelPortal:Q5BFB3 STRING:Q5BFB3
EnsemblFungi:CADANIAT00001898 GeneID:2876542 KEGG:ani:AN0767.2
Uniprot:Q5BFB3
Length = 136
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDN----TVHNIGMV 60
+L K+MDK+V +K N R V+GIL+G+D MNLVLD+ E +D+ T +G++
Sbjct: 52 DLTKYMDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMRDDEGNETTRALGLI 108
>ZFIN|ZDB-GENE-030131-8284 [details] [associations]
symbol:lsm7 "LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-030131-8284 EMBL:BX908398 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 HOVERGEN:HBG000513 OrthoDB:EOG4GB77F
GeneTree:ENSGT00510000047872 EMBL:BC133957 IPI:IPI00610946
RefSeq:NP_001041471.1 UniGene:Dr.10033 STRING:A4FVI7
Ensembl:ENSDART00000081188 GeneID:573047 KEGG:dre:573047
InParanoid:A4FVI7 NextBio:20891033 Uniprot:A4FVI7
Length = 103
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
+L K++DK + +K R +G+L+GFDP +NLVLD +EY +D
Sbjct: 14 DLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRD 57
>UNIPROTKB|G4NLE3 [details] [associations]
symbol:MGG_02938 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001237 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
RefSeq:XP_003720770.1 ProteinModelPortal:G4NLE3
EnsemblFungi:MGG_02938T0 GeneID:2682491 KEGG:mgr:MGG_02938
Uniprot:G4NLE3
Length = 146
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
+L K+MDK+V +K N R V G L+G+D MNLVLDE E +D
Sbjct: 60 DLAKYMDKEVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMRD 103
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
+L +F+DK++ +K R +G+LRGFD +N+VLD+ EY +D
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRD 58
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
+L +F+DK++ +K R +G+LRGFD +N+VLD+ EY +D
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRD 58
>FB|FBgn0261068 [details] [associations]
symbol:LSm7 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0022008 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 GeneTree:ENSGT00510000047872 HSSP:O29885 EMBL:AY113637
RefSeq:NP_001246045.1 RefSeq:NP_609807.1 UniGene:Dm.19844
SMR:Q9VJI7 IntAct:Q9VJI7 MINT:MINT-827616 STRING:Q9VJI7
EnsemblMetazoa:FBtr0080934 EnsemblMetazoa:FBtr0308804 GeneID:35003
KEGG:dme:Dmel_CG13277 UCSC:CG13277-RA FlyBase:FBgn0261068
InParanoid:Q9VJI7 OrthoDB:EOG41G1MQ GenomeRNAi:35003 NextBio:791341
Uniprot:Q9VJI7
Length = 110
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDN 52
+L K+++K++ +K R +GIL+G+D +NLVLD VEY +D+
Sbjct: 23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDS 67
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEY 48
+L K+ D K+ +KL + V G+L+G+D MNLVLD+ VEY
Sbjct: 29 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEY 69
>GENEDB_PFALCIPARUM|PFL0460w [details] [associations]
symbol:PFL0460w "u6 snRNA-associated Sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005634
"nucleus" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681
EMBL:AE014188 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 RefSeq:XP_001350501.1 HSSP:O29885
ProteinModelPortal:Q8I5V6 PRIDE:Q8I5V6
EnsemblProtists:PFL0460w:mRNA GeneID:811145 KEGG:pfa:PFL0460w
EuPathDB:PlasmoDB:PF3D7_1209200 ProtClustDB:CLSZ2431821
Uniprot:Q8I5V6
Length = 108
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
++KKFM++K+ +K + R V G L G D NLVLD+ EY +D
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRD 63
>UNIPROTKB|Q8I5V6 [details] [associations]
symbol:PFL0460w "Lsm7 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0005681 EMBL:AE014188 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
RefSeq:XP_001350501.1 HSSP:O29885 ProteinModelPortal:Q8I5V6
PRIDE:Q8I5V6 EnsemblProtists:PFL0460w:mRNA GeneID:811145
KEGG:pfa:PFL0460w EuPathDB:PlasmoDB:PF3D7_1209200
ProtClustDB:CLSZ2431821 Uniprot:Q8I5V6
Length = 108
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
++KKFM++K+ +K + R V G L G D NLVLD+ EY +D
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRD 63
>DICTYBASE|DDB_G0289499 [details] [associations]
symbol:lsm7 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0289499
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000141 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_636181.1 HSSP:O29386 ProteinModelPortal:Q54HF6
STRING:Q54HF6 EnsemblProtists:DDB0233196 GeneID:8627168
KEGG:ddi:DDB_G0289499 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 Uniprot:Q54HF6
Length = 97
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
+L+KF+ K++ +K R V GIL+G+D +N+ LD+ E+ +D
Sbjct: 14 DLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRD 57
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDN 52
+L ++ D+++ R +TGIL+GFD MNLVLD+ VE + N
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDD-VEEQLRN 70
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
+ K +++KV + L +NR G L GFD F+N++L++ VE+ D
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLID 54
>WB|WBGene00003080 [details] [associations]
symbol:lsm-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0040002 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 OMA:YISTSTK HOGENOM:HOG000223542
EMBL:FO080942 GeneTree:ENSGT00700000104493 HSSP:Q8ZYG5
RefSeq:NP_490883.1 ProteinModelPortal:Q95XN6 SMR:Q95XN6
STRING:Q95XN6 PaxDb:Q95XN6 EnsemblMetazoa:Y71G12B.14 GeneID:190601
KEGG:cel:CELE_Y71G12B.14 UCSC:Y71G12B.14 CTD:190601
WormBase:Y71G12B.14 InParanoid:Q95XN6 NextBio:946330 Uniprot:Q95XN6
Length = 77
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 1 MSK-SHPPE-LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIG 58
MSK +P E LKK + K V +KLN+ + GIL D +MN+ L++ EY + G
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
>TAIR|locus:2011246 [details] [associations]
symbol:LSM1A "SM-like 1A" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12620 HSSP:Q8ZYG5 UniGene:At.15081
UniGene:At.22114 ProtClustDB:CLSN2687863 EMBL:AF411792
EMBL:AY094024 IPI:IPI00538869 RefSeq:NP_564072.1
ProteinModelPortal:Q945P8 SMR:Q945P8 STRING:Q945P8 PRIDE:Q945P8
EnsemblPlants:AT1G19120.1 GeneID:838495 KEGG:ath:AT1G19120
TAIR:At1g19120 InParanoid:Q945P8 OMA:AYERVIV PhylomeDB:Q945P8
Genevestigator:Q945P8 Uniprot:Q945P8
Length = 128
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVE 47
L ++DKK+ + L R + G+LR FD F N VL+E E
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE 53
>GENEDB_PFALCIPARUM|PF14_0411 [details] [associations]
symbol:PF14_0411 "small nuclear ribonuclear
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0003676 EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12624 OMA:CIGSRIW ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547
HSSP:Q8ZYG5 RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38
SMR:Q8IL38 EnsemblProtists:PF14_0411:mRNA GeneID:811993
KEGG:pfa:PF14_0411 EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVEE 62
+ K + K+ + + ++ + G L GFD ++N+VL++ EY N V + +++
Sbjct: 16 MDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKK 69
>UNIPROTKB|Q8IL38 [details] [associations]
symbol:PF14_0411 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547 HSSP:Q8ZYG5
RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38 SMR:Q8IL38
EnsemblProtists:PF14_0411:mRNA GeneID:811993 KEGG:pfa:PF14_0411
EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVEE 62
+ K + K+ + + ++ + G L GFD ++N+VL++ EY N V + +++
Sbjct: 16 MDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKK 69
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 62 62 0.00091 102 3 11 22 0.42 28
29 0.41 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 441 (47 KB)
Total size of DFA: 76 KB (2063 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.38u 0.07s 7.45t Elapsed: 00:00:04
Total cpu time: 7.38u 0.07s 7.45t Elapsed: 00:00:06
Start: Thu Aug 15 11:54:05 2013 End: Thu Aug 15 11:54:11 2013