RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11512
(62 letters)
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2
complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Length = 76
Score = 84.7 bits (210), Expect = 3e-24
Identities = 43/60 (71%), Positives = 49/60 (81%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
MSK+HPPELKKFMDKK++LKLN R+V GILRGFDPFMNLV+DE VE +NIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein,
SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus
solfataricus} SCOP: b.38.1.1
Length = 81
Score = 83.5 bits (207), Expect = 9e-24
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
++++ L + ++ V +KL N+ V G+LR +D MNLVL + E + D + +G +
Sbjct: 6 LAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTI 65
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding
protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP:
b.38.1.1 PDB: 1i5l_A*
Length = 77
Score = 73.5 bits (181), Expect = 8e-20
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
M L + + V ++L R G L G+D MNLVL + E + V +G V
Sbjct: 1 MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSV 60
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_B
Length = 75
Score = 72.0 bits (177), Expect = 4e-19
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
M S L K + KKV ++L++ + GIL D +MNL L+ EY + G
Sbjct: 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 60
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A
{Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Length = 75
Score = 67.3 bits (165), Expect = 2e-17
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
M++ + + +DK V + L G L G+D +N+VL + + V G +
Sbjct: 1 MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI 60
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_C
Length = 113
Score = 66.9 bits (163), Expect = 1e-16
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 2 SKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61
K +L ++ D+++ R +TGIL+GFD MNLVLD+ E ++ +
Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAI 80
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers
form 35-stranded beta-sheet I heptamer, structural
genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1
PDB: 1lnx_A*
Length = 81
Score = 64.7 bits (158), Expect = 3e-16
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 3 KSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
+ L+ + K+V +KL + + GILR FD +NL+L++ E D V+ G +
Sbjct: 10 ATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTM 66
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein;
1.70A {Methanothermobacterthermautotrophicus} SCOP:
b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Length = 83
Score = 64.3 bits (157), Expect = 4e-16
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 MSKSHP-PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGM 59
++ P L ++ V +KL +R G+L+ FD MNLVL++ E +G
Sbjct: 11 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 70
Query: 60 V 60
V
Sbjct: 71 V 71
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP,
splicing, core snRNP domain, systemic lupus eryth SLE,
RNA binding protein; HET: CIT; 2.00A {Homo sapiens}
SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Length = 91
Score = 62.9 bits (153), Expect = 2e-15
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNT 53
M+ ++ + +D ++ L R G + FD MNL+L + E+RK
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP 53
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3;
RNA-binding protein, SM protein, ring, HOMO octamer,
mRNA processing; 2.50A {Saccharomyces cerevisiae}
Length = 96
Score = 59.7 bits (145), Expect = 4e-14
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVE 61
LK +D++V +KL R + G L+ FD N+VL + VE + E
Sbjct: 15 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESE 67
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA
binding protein, unknown F; 1.95A {Archaeoglobus
fulgidus} SCOP: b.38.1.1
Length = 77
Score = 57.7 bits (140), Expect = 1e-13
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 7 PELKKFMDKKVTLKLNANRN-VTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
+K + K + +++ N + G L G D +MNL L +E + + V ++G +
Sbjct: 8 QMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEI 62
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2
complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Length = 86
Score = 57.5 bits (139), Expect = 2e-13
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 7 PELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
P L K V +KL G L D +MN+ L EY ++G V
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA
decay, LSM proteins, RNA binding protein; 2.70A
{Schizosaccharomyces pombe}
Length = 93
Score = 52.5 bits (126), Expect = 3e-11
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVEE 62
++ +D+ V +KL +R + G L +D +N+VL + E +
Sbjct: 14 VRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F;
heptamer, translation; 2.80A {Saccharomyces cerevisiae}
SCOP: b.38.1.1 PDB: 1n9s_A
Length = 93
Score = 52.2 bits (125), Expect = 3e-11
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 1 MSKSHP----PELKKFMDKKVTLKLNAN-RNVTGILRGFDPFMNLVLDEGVEYRKDNTVH 55
+S P P LK ++ +V +KL N G L D + NL L+E E+ +
Sbjct: 14 ISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHG 73
Query: 56 NIGMV 60
+G +
Sbjct: 74 TLGEI 78
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_A
Length = 94
Score = 51.0 bits (122), Expect = 1e-10
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 1 MSKSHPPE--LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYR-KDNTVHNI 57
MS + P + K + + + + + R G L GFD ++N+VL + EY
Sbjct: 15 MSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKH 74
Query: 58 GMV 60
+
Sbjct: 75 SEM 77
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics,
structural genomics consortium, SGC, DNA binding
protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1
PDB: 3pgg_A
Length = 121
Score = 50.8 bits (121), Expect = 3e-10
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVEE 62
+ K + ++ + + ++ +G+LRGFD ++N+VLD+ EY +I +
Sbjct: 33 IDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNK 86
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2
complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Length = 92
Score = 42.5 bits (100), Expect = 2e-07
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYR-KDNTVHNIGMV 60
L+ +V L N + G + GFD +MNLVLD+ E K + +G +
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRI 77
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_A
Length = 231
Score = 43.1 bits (101), Expect = 6e-07
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 1 MSKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRK 50
M+ ++ + +D ++ L R G + FD MNL+L + E+RK
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRK 50
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA
decay, PRE-mRNA splicing, LSM proteins, RNA BI protein;
2.20A {Schizosaccharomyces pombe}
Length = 105
Score = 39.7 bits (93), Expect = 3e-06
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKD 51
L + + ++L G L D +MNL L E + D
Sbjct: 21 LNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPD 63
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing,
spliceosome, core snRNP domain, systemi erythematosus,
SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP:
b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B
3pgw_X* 3s6n_A
Length = 119
Score = 39.2 bits (91), Expect = 7e-06
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
L K + VT++L V G + G D MN L K+ + +
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETL 58
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex,
PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM
site, SM fold, heteromeric heptameric ring; 3.60A {Homo
sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Length = 126
Score = 38.9 bits (90), Expect = 1e-05
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 1 MSKSHPPE-LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGM 59
MS P + L + VT + N G L + MN + +D V +
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60
Query: 60 V 60
V
Sbjct: 61 V 61
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing,
core snRNP domain, systemic lupus eryth SLE, RNA
binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP:
b.38.1.1
Length = 75
Score = 37.0 bits (86), Expect = 2e-05
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMV 60
L + VT + N G L + MN + +D V + V
Sbjct: 10 LHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P;
OB-like fold, B-sheet toroid, 14-MER, cadmium-binding
site, translation; 2.00A {Pyrobaculum aerophilum} SCOP:
b.38.1.1
Length = 130
Score = 31.2 bits (70), Expect = 0.008
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 8 ELKKFMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVE 47
EL + ++V + L+ G+L D +N+VL
Sbjct: 4 ELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASN 43
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing,
spliceosome, core snRNP domain, systemi erythematosus,
SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP:
b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C
3pgw_Y* 3s6n_B
Length = 118
Score = 30.3 bits (68), Expect = 0.014
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 14 DKKVTLKLNANRNVTGILRGFDPFMNLVLDEGVEYRKDNTVHNIGMVEE 62
+ +V + N+ + G ++ FD N+VL+ E + G +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY
diffraction, structural genomics, NPPSFA; HET: BTN;
2.00A {Methanocaldococcus jannaschii}
Length = 237
Score = 28.4 bits (64), Expect = 0.091
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 12 FMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEG 45
+ K+V + L+ N +TG + D ++ E
Sbjct: 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVLGTEK 223
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase
inhibitor complex; HET: BS5; 1.70A {Mycobacterium
tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Length = 270
Score = 27.3 bits (61), Expect = 0.28
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 12 FMDKKVTLKLNANRNVTGILRGFDPFMNLVLDEG 45
+ +V ++L ++V GI R D L LD G
Sbjct: 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex,
RNA binding protein; 2.00A {Homo sapiens}
Length = 86
Score = 25.8 bits (56), Expect = 0.48
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 2 SKSHPPELKKFMDKKVTLKLNANRNVTGILRGFDPF-MNLVLDEGVEYRKDN 52
K P E + ++ K+V + + G + DP N+VL +E +
Sbjct: 5 MKKGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLEDGSMS 56
>1ycy_A Conserved hypothetical protein; structural genomics, southeast
collaboratory for structural genomics, secsg, protein
structure initiative; 2.80A {Pyrococcus furiosus} SCOP:
b.38.1.4
Length = 71
Score = 24.6 bits (53), Expect = 1.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 9 LKKFMDKKVTLKLNANRNVTGILRGFD 35
LK++ KV + + + + TG L FD
Sbjct: 11 LKEWKGHKVAVSVGGDHSFTGTLEDFD 37
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 24.0 bits (53), Expect = 3.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
+LR FD + +E GVE K + V +
Sbjct: 222 VLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 254
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 24.0 bits (53), Expect = 3.9
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
+L FDP + + + G+E + V +
Sbjct: 201 LLFQFDPLLSATLAENMHAQGIETHLEFAVAAL 233
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 24.0 bits (53), Expect = 4.2
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
IL FD M + G+ ++ + ++
Sbjct: 205 ILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSV 237
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 23.7 bits (52), Expect = 4.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
+LRGFD M N + + G+++ + +
Sbjct: 244 LLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKV 276
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 23.6 bits (52), Expect = 4.8
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
ILR FD + L+ D G+ + TV +
Sbjct: 226 ILRNFDYDLRQLLNDAMVAKGISIIYEATVSQV 258
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 23.6 bits (52), Expect = 5.2
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 14 DKKVTLKLNANRNV 27
++ V +KL+A R V
Sbjct: 322 EQGVRMKLSAVRGV 335
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 23.3 bits (51), Expect = 6.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
ILRGFD + V + G+E + +
Sbjct: 229 ILRGFDETIREEVTKQLTANGIEIMTNENPAKV 261
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 23.3 bits (51), Expect = 6.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
LRGFD M +LV + G ++ K +I
Sbjct: 219 PLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHI 251
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal
protein, essential gene, structural genomics; NMR
{Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Length = 164
Score = 23.0 bits (50), Expect = 7.3
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 6 PPELKKFMDKKVTLKL----NANRNVTGILRGFD 35
+ + K + + L + + G L F+
Sbjct: 96 KDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFE 129
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 23.3 bits (51), Expect = 7.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
ILRGFD + + ++ G+ R +
Sbjct: 225 ILRGFDSELRKQLTEQLRANGINVRTHENPAKV 257
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 23.3 bits (51), Expect = 7.7
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
+LR FD + N + D G+ K + + +
Sbjct: 220 VLRKFDECIQNTITDHYVKEGINVHKLSKIVKV 252
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 22.8 bits (50), Expect = 8.2
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFMNLVLDE-----GVEYRKDNTVHNI 57
L FDP ++ L E G + + +
Sbjct: 202 PLPSFDPMISETLVEVMNAEGPQLHTNAIPKAV 234
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 22.9 bits (50), Expect = 8.8
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 30 ILRGFDPFM-NLVLDE----GVEYRKDNTVHNI 57
+LRGFD M LV G+ + + ++
Sbjct: 221 VLRGFDQQMAELVAASMEERGIPFLRKTVPLSV 253
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.388
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 950,570
Number of extensions: 42675
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 41
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)