BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11515
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 14 FSTSIQTLMWVPDSFFTALLSGR--ISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL- 70
F T+ QTL P SF L + S KDETGA IDRDP F +LNYLR + +
Sbjct: 23 FLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVIN 82
Query: 71 KSTDLRTLRHEAEYYGIAPLVK 92
K + EAE+Y I L+K
Sbjct: 83 KDLAEEGVLEEAEFYNITSLIK 104
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 14 FSTSIQTLMWVPDSFFTALLSGR--ISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL- 70
F T+ QTL P SF L + S KDETGA IDRDP F +LNYLR + +
Sbjct: 17 FLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVIN 76
Query: 71 KSTDLRTLRHEAEYYGIAPLVK 92
K + EAE+Y I L+K
Sbjct: 77 KDLAEEGVLEEAEFYNITSLIK 98
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS 72
RF T TL PD+ + + + ++T F DRDP+VF +LN+ RT +
Sbjct: 45 RFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPR 102
Query: 73 TD-LRTLRHEAEYYGIAPLV 91
+ + E +YGI P +
Sbjct: 103 YECISAYDDELAFYGILPEI 122
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS 72
RF T TL PD+ + + + ++T F DRDP+VF +LN+ RT +
Sbjct: 23 RFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPR 80
Query: 73 TD-LRTLRHEAEYYGIAPLV 91
+ + E +YGI P +
Sbjct: 81 YECISAYDDELAFYGILPEI 100
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS 72
RF T TL PD+ + + + ++T F DRDP+VF +LN+ RT +
Sbjct: 51 RFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPR 108
Query: 73 TD-LRTLRHEAEYYGIAPLV 91
+ + E +YGI P +
Sbjct: 109 YECISAYDDELAFYGILPEI 128
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 13 RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-K 71
RF T TL PD+ + S R ET F DRDP +F ILN+ RT + +
Sbjct: 10 RFQTWQDTLERYPDTLLGS--SERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPR 67
Query: 72 STDLRTLRHEAEYYGIAPLV 91
+ E ++G+ P +
Sbjct: 68 HECISAYDEELAFFGLIPEI 87
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 19 QTLMWVPDSFFTALLSGRISSLKDETGAIFI-DRDPKVFAIILNYLRTRDIDLKSTDLRT 77
+ ++ V S F A G ++ +K E I I D +P F I+L Y + +IDL++ +
Sbjct: 28 KYVLAVGSSVFYAXFYGDLAEVKSE---IHIPDVEPAAFLILLKYXYSDEIDLEADTVLA 84
Query: 78 LRHEAEYYGIAPLVKRLV 95
+ A+ Y + L K V
Sbjct: 85 TLYAAKKYIVPALAKACV 102
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 69 DLKSTDLRTLRHEAEYYGIAPLVKRLVLCEDLNQSSCGDVLFYGY 113
DLK DL+ +A+ G A ++++ C LN S+ G LF GY
Sbjct: 638 DLK-VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY 681
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 1 MKLEPYLLIEIP--RFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAI 58
M E ++I + R T TL +P + + L G ++ F DR P VFA
Sbjct: 1 MDAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLN-YDPVLNEYFFDRHPGVFAQ 59
Query: 59 ILNYLRTRDIDLKSTDLRTL-RHEAEYYGI 87
I+NY R+ + + L E E++G+
Sbjct: 60 IINYYRSGKLHYPTDVCGPLFEEELEFWGL 89
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 52 DPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYYGIAPL 90
P FA +LN++ ++L+ +LR L+ A G+ L
Sbjct: 69 SPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSL 107
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAII 59
+ PY I P T+ Q + W+ D + T IS KD + + + P V I+
Sbjct: 134 ISPYTDIPAPDVYTNPQIMAWMMDEYET------ISRRKDPSFGVITGKPPSVGGIV 184
>pdb|1V4N|A Chain A, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|B Chain B, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|C Chain C, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
Length = 281
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 6 YLLIEIPRFSTSIQTLMW 23
Y+ IE PRFST ++++W
Sbjct: 163 YICIEGPRFSTRAESIVW 180
>pdb|1T8T|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
pdb|1T8T|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
Length = 271
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 11 IPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAI 58
+PR T+ P F T RIS++ +T I + RDP AI
Sbjct: 68 MPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAI 115
>pdb|1T8U|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
pdb|1T8U|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
Length = 272
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 11 IPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAI 58
+PR T+ P F T RIS++ +T I + RDP AI
Sbjct: 69 MPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAI 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,390,888
Number of Sequences: 62578
Number of extensions: 115872
Number of successful extensions: 232
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 19
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)