Query psy11515
Match_columns 117
No_of_seqs 125 out of 1018
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:23:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02214 BTB_2: BTB/POZ domain 99.9 1.7E-27 3.7E-32 151.6 8.2 90 5-94 1-94 (94)
2 KOG2716|consensus 99.9 1.5E-25 3.2E-30 162.4 8.1 95 1-96 3-99 (230)
3 KOG2714|consensus 99.9 1.2E-24 2.7E-29 167.5 9.3 98 2-99 10-109 (465)
4 KOG2715|consensus 99.9 4.9E-23 1.1E-27 142.3 6.6 94 3-96 21-116 (210)
5 KOG1665|consensus 99.9 9.9E-23 2.2E-27 146.8 8.1 93 4-96 10-105 (302)
6 KOG2723|consensus 99.8 6.8E-20 1.5E-24 132.2 7.4 94 2-95 8-103 (221)
7 KOG3713|consensus 99.8 5.3E-19 1.2E-23 138.5 9.0 93 3-95 31-133 (477)
8 PHA02790 Kelch-like protein; P 99.7 3E-18 6.6E-23 136.1 7.4 102 7-111 26-131 (480)
9 PHA02713 hypothetical protein; 99.7 2.3E-17 5E-22 133.2 7.4 104 3-109 26-132 (557)
10 smart00225 BTB Broad-Complex, 99.7 1.7E-16 3.7E-21 97.2 7.6 90 4-95 1-90 (90)
11 KOG4441|consensus 99.7 7.8E-17 1.7E-21 130.5 6.2 106 3-110 37-144 (571)
12 KOG4390|consensus 99.7 6.4E-17 1.4E-21 124.7 4.3 91 3-95 40-132 (632)
13 PHA03098 kelch-like protein; P 99.6 3.2E-16 6.9E-21 125.2 6.9 102 4-111 11-116 (534)
14 PF00651 BTB: BTB/POZ domain; 99.4 2.3E-12 5.1E-17 82.8 7.5 90 3-95 11-104 (111)
15 KOG1545|consensus 99.2 7E-12 1.5E-16 96.2 1.6 92 3-95 61-155 (507)
16 KOG3840|consensus 98.8 1.4E-08 3E-13 76.8 5.5 85 4-88 97-185 (438)
17 KOG4350|consensus 98.7 1.3E-08 2.9E-13 79.5 4.4 91 3-95 45-138 (620)
18 KOG2075|consensus 98.2 2.7E-06 5.9E-11 67.5 4.8 106 3-110 115-227 (521)
19 KOG4682|consensus 97.9 1.7E-05 3.8E-10 62.0 4.8 102 2-105 69-175 (488)
20 KOG4591|consensus 97.6 2.5E-05 5.4E-10 56.4 1.8 99 3-108 67-174 (280)
21 KOG0783|consensus 97.4 0.00034 7.3E-09 59.3 6.1 91 4-95 560-682 (1267)
22 smart00512 Skp1 Found in Skp1 96.0 0.045 9.8E-07 35.0 6.6 60 5-67 4-65 (104)
23 KOG0783|consensus 95.6 0.0051 1.1E-07 52.5 1.3 103 2-107 712-822 (1267)
24 PF11822 DUF3342: Domain of un 95.6 0.018 3.8E-07 44.2 4.0 83 12-95 14-97 (317)
25 PF03931 Skp1_POZ: Skp1 family 94.6 0.26 5.6E-06 28.6 6.2 57 4-65 2-59 (62)
26 KOG1724|consensus 93.3 0.33 7.1E-06 33.9 5.8 83 10-95 13-120 (162)
27 PF02519 Auxin_inducible: Auxi 90.8 0.97 2.1E-05 29.0 5.3 57 4-63 40-99 (100)
28 KOG3473|consensus 90.7 1.7 3.6E-05 28.1 6.2 82 3-86 17-111 (112)
29 KOG2838|consensus 87.6 1.4 3E-05 33.7 4.8 84 4-88 132-219 (401)
30 PLN03090 auxin-responsive fami 78.3 7.9 0.00017 25.1 4.9 56 5-63 45-103 (104)
31 PLN03219 uncharacterized prote 76.1 7.5 0.00016 25.3 4.4 57 4-63 43-105 (108)
32 COG5201 SKP1 SCF ubiquitin lig 75.7 11 0.00023 25.7 5.2 90 1-95 1-115 (158)
33 PF12926 MOZART2: Mitotic-spin 71.5 3.4 7.3E-05 26.0 1.9 20 50-69 40-59 (88)
34 PLN03220 uncharacterized prote 69.7 12 0.00025 24.3 4.1 54 5-61 40-101 (105)
35 PF01466 Skp1: Skp1 family, di 66.0 7.3 0.00016 23.4 2.6 25 71-95 12-36 (78)
36 PF02757 YLP: YLP motif; Inte 54.3 6 0.00013 14.4 0.4 6 111-116 2-7 (9)
37 PF10963 DUF2765: Protein of u 39.2 18 0.0004 22.4 1.2 29 5-35 1-29 (83)
38 PF03990 DUF348: Domain of unk 38.0 45 0.00097 17.6 2.5 13 4-16 1-13 (43)
39 PF11971 CAMSAP_CH: CAMSAP CH 36.8 30 0.00065 21.4 1.9 45 51-95 21-66 (85)
40 COG4680 Uncharacterized protei 35.8 36 0.00078 21.7 2.1 15 2-16 54-68 (98)
41 PF05164 ZapA: Cell division p 35.5 41 0.00088 20.1 2.4 14 4-17 1-14 (89)
42 KOG0511|consensus 35.3 29 0.00062 27.9 2.0 75 13-89 302-379 (516)
43 PRK07283 hypothetical protein; 32.3 54 0.0012 20.6 2.6 35 55-89 22-63 (98)
44 KOG4350|consensus 31.9 30 0.00064 28.2 1.6 25 71-95 146-170 (620)
45 cd00014 CH Calponin homology d 29.5 78 0.0017 19.2 3.0 40 51-90 30-79 (107)
46 TIGR01624 LRP1_Cterm LRP1 C-te 27.9 56 0.0012 18.2 1.8 11 6-16 33-43 (50)
47 PF02637 GatB_Yqey: GatB domai 25.5 1.1E+02 0.0023 20.4 3.3 45 51-95 40-99 (148)
48 PF10357 Kin17_mid: Domain of 25.4 15 0.00033 24.6 -0.9 16 43-58 83-100 (127)
49 PF09035 Tn916-Xis: Excisionas 24.5 51 0.0011 19.5 1.3 21 74-94 12-34 (67)
50 PF11829 DUF3349: Protein of u 23.6 46 0.001 21.2 1.1 16 53-68 2-17 (96)
51 PHA02114 hypothetical protein 21.7 1.4E+02 0.0029 19.5 3.0 39 50-88 67-111 (127)
52 COG0788 PurU Formyltetrahydrof 21.7 2.5E+02 0.0055 21.5 4.8 82 4-88 52-140 (287)
53 COG1911 RPL30 Ribosomal protei 21.3 1.2E+02 0.0026 19.5 2.6 31 55-85 23-56 (100)
54 PRK14126 cell division protein 20.8 1.1E+02 0.0024 18.8 2.4 16 2-17 6-21 (85)
No 1
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.95 E-value=1.7e-27 Score=151.55 Aligned_cols=90 Identities=40% Similarity=0.633 Sum_probs=76.0
Q ss_pred eEEEeCCeEEEeeHhhhccCCCchhhhHHhCc-CCCCCCCCccEEEcCChhhHHHHHHhHhh-Ccccc-CCcCHHHHHHH
Q psy11515 5 PYLLIEIPRFSTSIQTLMWVPDSFFTALLSGR-ISSLKDETGAIFIDRDPKVFAIILNYLRT-RDIDL-KSTDLRTLRHE 81 (117)
Q Consensus 5 V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~-~~~~~~~~~~~fidr~p~~F~~IL~flr~-g~l~l-~~~~~~~l~~e 81 (117)
|+|||||+.|.|+++||.+.|+|+|++|++.+ .....++++++||||||.+|++||+|+|+ |+++. +......+++|
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~E 80 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEE 80 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHH
Confidence 78999999999999999999999999999975 44445568999999999999999999999 67776 47789999999
Q ss_pred HhhcCChhH-HHHH
Q psy11515 82 AEYYGIAPL-VKRL 94 (117)
Q Consensus 82 a~~~~l~~L-~~~~ 94 (117)
|+||+|.++ ++.|
T Consensus 81 a~fy~l~~l~i~~c 94 (94)
T PF02214_consen 81 AEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHT-HHHHBHHC
T ss_pred HHHcCCCccccCCC
Confidence 999999998 7765
No 2
>KOG2716|consensus
Probab=99.92 E-value=1.5e-25 Score=162.42 Aligned_cols=95 Identities=41% Similarity=0.576 Sum_probs=87.5
Q ss_pred CCcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCC--cCHHHH
Q psy11515 1 MKLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS--TDLRTL 78 (117)
Q Consensus 1 ~~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~--~~~~~l 78 (117)
|+..|+|||||+.|.|+++||++. +++|+.|++.+++...++.+.+||||+|++|..||||+|+|.+.+|+ ..+.++
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk~-dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTKF-DGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhhh-hhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 356789999999999999999998 89999999999987777889999999999999999999999999864 567799
Q ss_pred HHHHhhcCChhHHHHHhh
Q psy11515 79 RHEAEYYGIAPLVKRLVL 96 (117)
Q Consensus 79 ~~ea~~~~l~~L~~~~~~ 96 (117)
++||+||.+++|++.|+.
T Consensus 82 ~~EA~fYlL~~Lv~~C~~ 99 (230)
T KOG2716|consen 82 LREAEFYLLDGLVELCQS 99 (230)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 999999999999999984
No 3
>KOG2714|consensus
Probab=99.91 E-value=1.2e-24 Score=167.52 Aligned_cols=98 Identities=57% Similarity=0.901 Sum_probs=86.6
Q ss_pred CcceEEEeCCeEEEeeHhhhccCC-CchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHH-
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVP-DSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLR- 79 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p-~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~- 79 (117)
+..|+|||||++|+|++.||+..| +|+|.++++++|...+++.+.+||||||++|..||||||||.++++..-...++
T Consensus 10 ~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 10 GDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred CceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 357999999999999999999987 999999999999888888899999999999999999999999999655555455
Q ss_pred HHHhhcCChhHHHHHhhhhh
Q psy11515 80 HEAEYYGIAPLVKRLVLCED 99 (117)
Q Consensus 80 ~ea~~~~l~~L~~~~~~~~~ 99 (117)
+||.||||.+++..+..+++
T Consensus 90 dEA~fYGl~~llrrl~~~~~ 109 (465)
T KOG2714|consen 90 DEAMFYGLTPLLRRLTLCEE 109 (465)
T ss_pred hhhhhcCcHHHHHHhhcCcc
Confidence 49999999999997765554
No 4
>KOG2715|consensus
Probab=99.88 E-value=4.9e-23 Score=142.30 Aligned_cols=94 Identities=35% Similarity=0.410 Sum_probs=85.6
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcC--CCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRI--SSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRH 80 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~--~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ 80 (117)
+-|+|||||+.|.|+|.||.+.|.+|++.+++... +...+++|.|+|||||..|..||||+|.|++.++....+.+++
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 56899999999999999999999999999988643 4566789999999999999999999999999998778889999
Q ss_pred HHhhcCChhHHHHHhh
Q psy11515 81 EAEYYGIAPLVKRLVL 96 (117)
Q Consensus 81 ea~~~~l~~L~~~~~~ 96 (117)
||+||+++.|++.+..
T Consensus 101 EAefyn~~~li~likd 116 (210)
T KOG2715|consen 101 EAEFYNDPSLIQLIKD 116 (210)
T ss_pred hhhccCChHHHHHHHH
Confidence 9999999999988873
No 5
>KOG1665|consensus
Probab=99.88 E-value=9.9e-23 Score=146.77 Aligned_cols=93 Identities=39% Similarity=0.543 Sum_probs=84.9
Q ss_pred ceEEEeCCeEEEeeHhhhc-cCCCchhhhHHhCc-CCCCCCCCccEEEcCChhhHHHHHHhHhhCcccc-CCcCHHHHHH
Q psy11515 4 EPYLLIEIPRFSTSIQTLM-WVPDSFFTALLSGR-ISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-KSTDLRTLRH 80 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~-~~p~s~f~~~f~~~-~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l-~~~~~~~l~~ 80 (117)
-|++||||++|.|++.||. +.|+|++.+||+++ +....++++.++|||+|..|+.||+|+|.|+++. ++.+...+++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 4899999999999999998 67999999999964 5556678899999999999999999999999987 7889999999
Q ss_pred HHhhcCChhHHHHHhh
Q psy11515 81 EAEYYGIAPLVKRLVL 96 (117)
Q Consensus 81 ea~~~~l~~L~~~~~~ 96 (117)
||+||||-.|+++++.
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999999973
No 6
>KOG2723|consensus
Probab=99.81 E-value=6.8e-20 Score=132.18 Aligned_cols=94 Identities=32% Similarity=0.515 Sum_probs=84.1
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCC--cCHHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS--TDLRTLR 79 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~--~~~~~l~ 79 (117)
.-.|.|||||+.|+|.++||.+.|++++++||++..+..++..+.+|||||..+|++||+|+|+.++.++. .++..+.
T Consensus 8 ~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~ 87 (221)
T KOG2723|consen 8 PDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVERLV 87 (221)
T ss_pred CCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHHHH
Confidence 45689999999999999999999999999999986666777889999999999999999999997777754 7799999
Q ss_pred HHHhhcCChhHHHHHh
Q psy11515 80 HEAEYYGIAPLVKRLV 95 (117)
Q Consensus 80 ~ea~~~~l~~L~~~~~ 95 (117)
+||+||++..+...+.
T Consensus 88 rEA~f~~l~~~~~~l~ 103 (221)
T KOG2723|consen 88 REAEFFQLEAPVTYLL 103 (221)
T ss_pred HHHHHHccccHHHHHh
Confidence 9999999997777665
No 7
>KOG3713|consensus
Probab=99.78 E-value=5.3e-19 Score=138.45 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=80.9
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcC--------CCCCCCCccEEEcCChhhHHHHHHhHhhCcccc-CCc
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRI--------SSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-KST 73 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~--------~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l-~~~ 73 (117)
..|+|||||++|.+.+++|.+.|.++++.+....- ..+...+++||+||+|.+|.+|++|+|||+++. .+.
T Consensus 31 ~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p~~v 110 (477)
T KOG3713|consen 31 RRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHVPADV 110 (477)
T ss_pred cEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeecccccc
Confidence 47999999999999999999999999999887331 123446899999999999999999999999998 588
Q ss_pred CHHHHHHHHhhcCCh-hHHHHHh
Q psy11515 74 DLRTLRHEAEYYGIA-PLVKRLV 95 (117)
Q Consensus 74 ~~~~l~~ea~~~~l~-~L~~~~~ 95 (117)
+...+.+|++||||+ .-++.|+
T Consensus 111 C~~~F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 111 CPLSFEEELDYWGIDEAHLESCC 133 (477)
T ss_pred chHHHHHHHHHhCCChhhhhHHh
Confidence 999999999999999 4566665
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=99.74 E-value=3e-18 Score=136.08 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=89.2
Q ss_pred EEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEE--EcCChhhHHHHHHhHhhCccccCCcCHHHHHHHHhh
Q psy11515 7 LLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIF--IDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEY 84 (117)
Q Consensus 7 lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~f--idr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea~~ 84 (117)
+-|.|+.|.+||.+|+++ +.||++||++++.+..+ .... .|.+++.++.||+|+|||++.++..+++.++++|.+
T Consensus 26 ~~~~~~~~~~HR~VLAa~-S~YFraMF~~~~~Es~~--~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~ 102 (480)
T PHA02790 26 IEAIGGNIIVNSTILKKL-SPYFRTHLRQKYTKNKD--PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASIL 102 (480)
T ss_pred EEEcCcEEeeehhhhhhc-CHHHHHHhcCCcccccc--ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHH
Confidence 445578999999999999 79999999999876532 2223 389999999999999999999999999999999999
Q ss_pred cCChhHHHHHh--hhhhcCCCCccccccc
Q psy11515 85 YGIAPLVKRLV--LCEDLNQSSCGDVLFY 111 (117)
Q Consensus 85 ~~l~~L~~~~~--~~~~~~~~~c~~~~~~ 111 (117)
+|++.+++.|. +.++++++||++++--
T Consensus 103 Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~ 131 (480)
T PHA02790 103 TSVEFIIYTCINFILRDFRKEYCVECYMM 131 (480)
T ss_pred hChHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 99999999998 6778999999988643
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.71 E-value=2.3e-17 Score=133.20 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=91.1
Q ss_pred cceEEEeC-CeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHH
Q psy11515 3 LEPYLLIE-IPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHE 81 (117)
Q Consensus 3 ~~V~lnVg-G~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~e 81 (117)
-||+|.|+ |+.|.+||.+|+++ +.||++||++++.+...++...+.+.++..|+.||+|+|||+ ++..+++.++.+
T Consensus 26 ~DV~L~v~~~~~f~~Hr~vLaa~-S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~a 102 (557)
T PHA02713 26 CDVIITIGDGEEIKAHKTILAAG-SKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKC 102 (557)
T ss_pred CCEEEEeCCCCEEeehHHHHhhc-CHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHH
Confidence 48999998 89999999999999 799999999988653323344466899999999999999998 466789999999
Q ss_pred HhhcCChhHHHHHh--hhhhcCCCCccccc
Q psy11515 82 AEYYGIAPLVKRLV--LCEDLNQSSCGDVL 109 (117)
Q Consensus 82 a~~~~l~~L~~~~~--~~~~~~~~~c~~~~ 109 (117)
|.++|++.+++.|. +.++++++||++++
T Consensus 103 A~~lqi~~l~~~C~~~l~~~l~~~NCl~i~ 132 (557)
T PHA02713 103 ADYLLIDDLVTDCESYIKDYTNHDTCIYMY 132 (557)
T ss_pred HHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence 99999999999998 57789999999886
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.68 E-value=1.7e-16 Score=97.20 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=78.1
Q ss_pred ceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHHh
Q psy11515 4 EPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAE 83 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea~ 83 (117)
||+++|||+.|.+||.+|++. +++|++|+.+++... ......+.|.++..|+.+++|+|+|++.++...+..++++|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~-s~~f~~~~~~~~~~~-~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAAC-SPYFKALFSGDFKES-KKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhc-CHHHHHHHcCCCccC-CCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 578999999999999999998 699999998765432 233445668999999999999999999987778999999999
Q ss_pred hcCChhHHHHHh
Q psy11515 84 YYGIAPLVKRLV 95 (117)
Q Consensus 84 ~~~l~~L~~~~~ 95 (117)
+|+++++.+.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999874
No 11
>KOG4441|consensus
Probab=99.67 E-value=7.8e-17 Score=130.52 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=96.3
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.||++.|.+||.+|+++ +.||++||++++.+... +...+.+.+|..++.+++|.|||++.++..+++.|+++|
T Consensus 37 cDv~L~v~~~~~~aHR~VLAa~-S~YFraMFt~~l~e~~~-~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA 114 (571)
T KOG4441|consen 37 CDVTLLVGDREFPAHRVVLAAC-SPYFRAMFTSGLKESKQ-KEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAA 114 (571)
T ss_pred ceEEEEECCeeechHHHHHHhc-cHHHHHHhcCCcccccc-eEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHH
Confidence 4899999999999999999999 79999999998876543 345577899999999999999999999999999999999
Q ss_pred hhcCChhHHHHHh--hhhhcCCCCcccccc
Q psy11515 83 EYYGIAPLVKRLV--LCEDLNQSSCGDVLF 110 (117)
Q Consensus 83 ~~~~l~~L~~~~~--~~~~~~~~~c~~~~~ 110 (117)
.++||.++++.|. +.++++++||+++..
T Consensus 115 ~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~ 144 (571)
T KOG4441|consen 115 SLLQIPEVVDACCEFLESQLDPSNCLGIRR 144 (571)
T ss_pred HHhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998 677999999998663
No 12
>KOG4390|consensus
Probab=99.66 E-value=6.4e-17 Score=124.73 Aligned_cols=91 Identities=27% Similarity=0.442 Sum_probs=77.1
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccC-CcCHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLK-STDLRTLRHE 81 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~-~~~~~~l~~e 81 (117)
--+++||+|++|+|.+.||.++|+++++. +...=.+..++++||+||||++|++||+|+|||+++.+ ..++...-+|
T Consensus 40 e~lvlNvSGrRFeTWknTLeryPdTLLGS--sEkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeE 117 (632)
T KOG4390|consen 40 ELLVLNVSGRRFETWKNTLERYPDTLLGS--SEKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEE 117 (632)
T ss_pred cEEEEeccccchhHHHhHHHhCchhhhCC--cchheeecCCcccccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhh
Confidence 35789999999999999999999998875 22211244568999999999999999999999999986 5678888899
Q ss_pred HhhcCCh-hHHHHHh
Q psy11515 82 AEYYGIA-PLVKRLV 95 (117)
Q Consensus 82 a~~~~l~-~L~~~~~ 95 (117)
..||||- +++..|+
T Consensus 118 LaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 118 LAFYGLVPELIGDCC 132 (632)
T ss_pred hhHhcccHHHHhhhh
Confidence 9999976 7888886
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.64 E-value=3.2e-16 Score=125.22 Aligned_cols=102 Identities=16% Similarity=0.281 Sum_probs=89.0
Q ss_pred ceEEEe--CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHH
Q psy11515 4 EPYLLI--EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHE 81 (117)
Q Consensus 4 ~V~lnV--gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~e 81 (117)
||+|.| +|+.|.+||.+|++. +.||++||++++. +....+.+ +++.|+.||+|+|+|++.++..++..+++.
T Consensus 11 Dv~l~~~~~~~~~~~Hk~vLaa~-S~yF~~mf~~~~~----~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~ 84 (534)
T PHA03098 11 DESIIIVNGGGIIKVHKIILSSS-SEYFKKMFKNNFK----ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSI 84 (534)
T ss_pred CEEEEEEcCCEEEEeHHHHHHhh-hHHHHHHHhCCCC----CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHH
Confidence 566666 999999999999998 7999999998875 23344556 999999999999999999988889999999
Q ss_pred HhhcCChhHHHHHh--hhhhcCCCCccccccc
Q psy11515 82 AEYYGIAPLVKRLV--LCEDLNQSSCGDVLFY 111 (117)
Q Consensus 82 a~~~~l~~L~~~~~--~~~~~~~~~c~~~~~~ 111 (117)
|.+||++.|.+.|+ +.+.++.+||++++-.
T Consensus 85 A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~ 116 (534)
T PHA03098 85 ANYLIIDFLINLCINYIIKIIDDNNCIDIYRF 116 (534)
T ss_pred HHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 99999999999998 4668999999987643
No 14
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.38 E-value=2.3e-12 Score=82.76 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=75.3
Q ss_pred cceEEEeC-CeEEEeeHhhhccCCCchhhhHHhCc-CCCCCCCCccE-EEcCChhhHHHHHHhHhhCccccC-CcCHHHH
Q psy11515 3 LEPYLLIE-IPRFSTSIQTLMWVPDSFFTALLSGR-ISSLKDETGAI-FIDRDPKVFAIILNYLRTRDIDLK-STDLRTL 78 (117)
Q Consensus 3 ~~V~lnVg-G~~F~~~~~tL~~~p~s~f~~~f~~~-~~~~~~~~~~~-fidr~p~~F~~IL~flr~g~l~l~-~~~~~~l 78 (117)
.|++|.|| |+.|.+||.+|+.. +.||+.||.+. +.. .....+ +-+.++..|+.+++|+|+|.+..+ ...+..+
T Consensus 11 ~D~~i~v~d~~~~~vhk~iL~~~-S~~F~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~l 87 (111)
T PF00651_consen 11 SDVTIRVGDGKTFYVHKNILAAR-SPYFRNLFEGSKFKE--STVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEEL 87 (111)
T ss_dssp --EEEEETTTEEEEE-HHHHHHH-BHHHHHHHTTTTSTT--SSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHH
T ss_pred CCEEEEECCCEEEeechhhhhcc-chhhhhccccccccc--ccccccccccccccccccccccccCCcccCCHHHHHHHH
Confidence 58999999 99999999999998 79999999875 211 111233 457899999999999999999987 8899999
Q ss_pred HHHHhhcCChhHHHHHh
Q psy11515 79 RHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 79 ~~ea~~~~l~~L~~~~~ 95 (117)
++.|.+|+++.|.+.|.
T Consensus 88 l~lA~~~~~~~L~~~~~ 104 (111)
T PF00651_consen 88 LELADKLQIPELKKACE 104 (111)
T ss_dssp HHHHHHTTBHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHH
Confidence 99999999999999997
No 15
>KOG1545|consensus
Probab=99.18 E-value=7e-12 Score=96.19 Aligned_cols=92 Identities=21% Similarity=0.338 Sum_probs=76.2
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCc-cccC-CcCHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRD-IDLK-STDLRTLRH 80 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~-l~l~-~~~~~~l~~ 80 (117)
.+|+|||.|-+|+|...||+++|++++..-- .++....+-+++||+||+...|..||.|+++|. +..+ +..+.-+++
T Consensus 61 ervvINisGlRFeTql~TL~qfP~TLLGDp~-kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVPlDiF~e 139 (507)
T KOG1545|consen 61 ERVVINISGLRFETQLKTLAQFPNTLLGDPA-KRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLE 139 (507)
T ss_pred cEEEEEeccceehHHHHHHhhCchhhcCCHH-HhcccccccchhhcccCCCCccceEEEEeecCceecCCccccHHHHHH
Confidence 5799999999999999999999999887532 244444556789999999999999999999977 4444 677899999
Q ss_pred HHhhcCCh-hHHHHHh
Q psy11515 81 EAEYYGIA-PLVKRLV 95 (117)
Q Consensus 81 ea~~~~l~-~L~~~~~ 95 (117)
|.+|||+. +..+...
T Consensus 140 EirFyqlG~eame~Fr 155 (507)
T KOG1545|consen 140 EIRFYQLGDEAMERFR 155 (507)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 99999998 4555554
No 16
>KOG3840|consensus
Probab=98.76 E-value=1.4e-08 Score=76.83 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=73.7
Q ss_pred ceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCC-CCCCccEEE--cCChhhHHHHHHhHhhCcccc-CCcCHHHHH
Q psy11515 4 EPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSL-KDETGAIFI--DRDPKVFAIILNYLRTRDIDL-KSTDLRTLR 79 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~-~~~~~~~fi--dr~p~~F~~IL~flr~g~l~l-~~~~~~~l~ 79 (117)
.+++-|.|.+|.+++..|...|.+++..||.++.... .++.++|-+ +....+|+.||+|+.+|.+.. +...+.+|.
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 5788899999999999999999999999999876543 346787766 478999999999999999998 578899999
Q ss_pred HHHhhcCCh
Q psy11515 80 HEAEYYGIA 88 (117)
Q Consensus 80 ~ea~~~~l~ 88 (117)
++|.|+-|+
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 999998765
No 17
>KOG4350|consensus
Probab=98.72 E-value=1.3e-08 Score=79.47 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=68.0
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCC---cCHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKS---TDLRTLR 79 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~---~~~~~l~ 79 (117)
.||++.|..++|..||..|+.. ++||++|+-++|.+.. +...-.-+-+.++|+.+|.|+|+|++.+.. +....++
T Consensus 45 ~DVtfvve~~rfpAHRvILAaR-s~yFRAlLYgGm~Es~-q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~L 122 (620)
T KOG4350|consen 45 SDVTFVVEDTRFPAHRVILAAR-SSYFRALLYGGMQESH-QQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYL 122 (620)
T ss_pred cceEEEEeccccchhhhhHHHH-HHHHHHHHhhhhhhhh-hcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHH
Confidence 4899999999999999999988 7999999999887654 334446677899999999999999997732 2233344
Q ss_pred HHHhhcCChhHHHHHh
Q psy11515 80 HEAEYYGIAPLVKRLV 95 (117)
Q Consensus 80 ~ea~~~~l~~L~~~~~ 95 (117)
.-|..||+.+|...+.
T Consensus 123 slAh~Ygf~~Le~aiS 138 (620)
T KOG4350|consen 123 SLAHRYGFIQLETAIS 138 (620)
T ss_pred HHHHhcCcHHHHHHHH
Confidence 4455555555444443
No 18
>KOG2075|consensus
Probab=98.16 E-value=2.7e-06 Score=67.50 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=84.9
Q ss_pred cceEEEeC-----CeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHH
Q psy11515 3 LEPYLLIE-----IPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRT 77 (117)
Q Consensus 3 ~~V~lnVg-----G~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~ 77 (117)
.+|++.|| -++++.||-+|+.. ++.|.+||.+++... .......-|.+|..|...|+|+|+-.+.+..+++..
T Consensus 115 adv~fivg~~~~~~q~~paHk~vla~g-S~VFdaMf~g~~a~~-~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~ 192 (521)
T KOG2075|consen 115 ADVHFIVGEEDGGSQRIPAHKLVLADG-SDVFDAMFYGGLAED-ASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVIT 192 (521)
T ss_pred ceeEEEeccCCCcccccchhhhhhhcc-hHHHHHHhccCcccc-cCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHH
Confidence 57888886 37999999999987 799999999988654 122334668999999999999999888888888999
Q ss_pred HHHHHhhcCChhHHHHHh--hhhhcCCCCcccccc
Q psy11515 78 LRHEAEYYGIAPLVKRLV--LCEDLNQSSCGDVLF 110 (117)
Q Consensus 78 l~~ea~~~~l~~L~~~~~--~~~~~~~~~c~~~~~ 110 (117)
++..|+-|-++.|.+.|. .++++.+-|-.-.++
T Consensus 193 tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~ 227 (521)
T KOG2075|consen 193 TLYAAKKYLVPALERQCVKFLRKNLMADNAFLELF 227 (521)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999999999999999997 344555555444443
No 19
>KOG4682|consensus
Probab=97.91 E-value=1.7e-05 Score=62.04 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=82.7
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE---cCChhhHHHHHHhHhhCccccCCcCHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI---DRDPKVFAIILNYLRTRDIDLKSTDLRTL 78 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi---dr~p~~F~~IL~flr~g~l~l~~~~~~~l 78 (117)
+.||.|..=|...+.|+--|.+. .||.+||++.|.+....-...-| ..|...|..++.=+|..++.++...+..+
T Consensus 69 nSDv~l~alg~eWrlHk~yL~QS--~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gv 146 (488)
T KOG4682|consen 69 NSDVILEALGFEWRLHKPYLFQS--EYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGV 146 (488)
T ss_pred Ccceehhhccceeeeeeeeeecc--HHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHH
Confidence 56899999999999999988875 59999999988664332122222 25788999999999999999988889999
Q ss_pred HHHHhhcCChhHHHHHhh--hhhcCCCCc
Q psy11515 79 RHEAEYYGIAPLVKRLVL--CEDLNQSSC 105 (117)
Q Consensus 79 ~~ea~~~~l~~L~~~~~~--~~~~~~~~c 105 (117)
+++|.+++++.+++.|.+ .+.+++.+.
T Consensus 147 lAaA~~lqldgl~qrC~evMie~lspkta 175 (488)
T KOG4682|consen 147 LAAACLLQLDGLIQRCGEVMIETLSPKTA 175 (488)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcChhhh
Confidence 999999999999999983 445776654
No 20
>KOG4591|consensus
Probab=97.64 E-value=2.5e-05 Score=56.39 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=74.5
Q ss_pred cceEEEeCC---eEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCcc--EEEcCChhhHHHHHHhHhhCccccC--CcCH
Q psy11515 3 LEPYLLIEI---PRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGA--IFIDRDPKVFAIILNYLRTRDIDLK--STDL 75 (117)
Q Consensus 3 ~~V~lnVgG---~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~--~fidr~p~~F~~IL~flr~g~l~l~--~~~~ 75 (117)
.|+++.+|| +..+.|+-+|++..+ |.++.+++ ++..+ ..-|.|+++|...+.|+||.++.+. ..-+
T Consensus 67 SDlk~K~~gns~k~i~AHKfVLAARsD--~WkfaN~~-----dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L 139 (280)
T KOG4591|consen 67 SDLKFKFAGNSDKHIPAHKFVLAARSD--FWKFANGG-----DEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFL 139 (280)
T ss_pred cceeEEecCCccccCchhhhhhhhhcc--hhhhccCC-----CcchhhhcccccCHHHHHHhheeeeccccccccchHHH
Confidence 478999985 678999999998733 33332322 22222 2347899999999999999999984 4557
Q ss_pred HHHHHHHhhcCChhHHHHHh--hhhhcCCCCcccc
Q psy11515 76 RTLRHEAEYYGIAPLVKRLV--LCEDLNQSSCGDV 108 (117)
Q Consensus 76 ~~l~~ea~~~~l~~L~~~~~--~~~~~~~~~c~~~ 108 (117)
.++.+-|.-||+..|.+.|. ....+...||..+
T Consensus 140 ~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~ 174 (280)
T KOG4591|consen 140 LELCELANRFQLELLKERCEKGLGALLHVDNCIKF 174 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHH
Confidence 78999999999999999998 3446788899754
No 21
>KOG0783|consensus
Probab=97.44 E-value=0.00034 Score=59.35 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=66.2
Q ss_pred ceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCC-----------CCCCCccEEEcCChhhHHHHHHhHhhCccccC-
Q psy11515 4 EPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISS-----------LKDETGAIFIDRDPKVFAIILNYLRTRDIDLK- 71 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~-----------~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~- 71 (117)
||++.|||..|+.|+-.|+.. +++|++++-..... .....-..+-|..|.+|++||+|+|+..+--|
T Consensus 560 DVtf~vg~~~F~aHKfIl~~r-s~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~ 638 (1267)
T KOG0783|consen 560 DVTFYVGTSMFHAHKFILCAR-SSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPW 638 (1267)
T ss_pred eEEEEecCeecccceEEEEec-cHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCCc
Confidence 799999999999999999998 79999988643211 11122233446899999999999999853111
Q ss_pred -------------CcCHH-------HHHHHHhhcCChhHHHHHh
Q psy11515 72 -------------STDLR-------TLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 72 -------------~~~~~-------~l~~ea~~~~l~~L~~~~~ 95 (117)
..+.. ++..-++-|++.+|.....
T Consensus 639 heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 639 HEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred cccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 12222 3777788999998888776
No 22
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.00 E-value=0.045 Score=34.95 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=41.5
Q ss_pred eEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE-cCChhhHHHHHHhHhhCc
Q psy11515 5 PYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI-DRDPKVFAIILNYLRTRD 67 (117)
Q Consensus 5 V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi-dr~p~~F~~IL~flr~g~ 67 (117)
|+|.= +|+.|.+++..... +..++.|+.+.-.. ......+-+ +.++..++.|++|+..-+
T Consensus 4 v~L~S~Dg~~f~v~~~~a~~--S~~i~~~l~~~~~~-~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~ 65 (104)
T smart00512 4 IKLISSDGEVFEVEREVARQ--SKTIKAMIEDLGVD-DENNNPIPLPNVTSKILSKVIEYCEHHV 65 (104)
T ss_pred EEEEeCCCCEEEecHHHHHH--HHHHHHHHHccCcc-cCCCCCccCCCcCHHHHHHHHHHHHHcc
Confidence 44444 89999999998865 57788888743211 111134444 589999999999998754
No 23
>KOG0783|consensus
Probab=95.64 E-value=0.0051 Score=52.50 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=68.8
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhh-Ccccc-C----CcCH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRT-RDIDL-K----STDL 75 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~-g~l~l-~----~~~~ 75 (117)
+.+|++. +|+.|.+|+-.|.+. ..||..||+.-|.+... ..........+..+.||+|+|+ -+..+ . ..-+
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aR-lEYF~smf~~~w~E~sS-~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSAR-LEYFSSMFQFVWMESSS-ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeH-HHHHHHHHHHHHhhhcc-ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 4455555 899999999999987 79999999876654322 1112223457999999999994 44433 1 1224
Q ss_pred HHHHHHHhhcCChhHHHHHh--hhhhcCCCCccc
Q psy11515 76 RTLRHEAEYYGIAPLVKRLV--LCEDLNQSSCGD 107 (117)
Q Consensus 76 ~~l~~ea~~~~l~~L~~~~~--~~~~~~~~~c~~ 107 (117)
-+++.-|..|=|.+|.+.|+ +.+.++--+|..
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~ 822 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLRKLNLKTLPT 822 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHH
Confidence 56667777777888888887 334455555543
No 24
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.60 E-value=0.018 Score=44.17 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=67.1
Q ss_pred eEEEeeHhhhccCCCchhhhHHhCcCCC-CCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHHhhcCChhH
Q psy11515 12 PRFSTSIQTLMWVPDSFFTALLSGRISS-LKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYYGIAPL 90 (117)
Q Consensus 12 ~~F~~~~~tL~~~p~s~f~~~f~~~~~~-~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea~~~~l~~L 90 (117)
+.|.+.+..|.+. =.||+...+..... ...+...+-+.+|-.+|+=+++|.....-.++..++-.++--++|+|+++|
T Consensus 14 rdF~C~~~lL~~~-M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~L 92 (317)
T PF11822_consen 14 RDFTCPRDLLVSE-MRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESL 92 (317)
T ss_pred eeeeccHHHHHHh-hHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHH
Confidence 5799999999997 68999988542211 222346677789999999999999997767777788889999999999999
Q ss_pred HHHHh
Q psy11515 91 VKRLV 95 (117)
Q Consensus 91 ~~~~~ 95 (117)
++.|-
T Consensus 93 ve~cl 97 (317)
T PF11822_consen 93 VEECL 97 (317)
T ss_pred HHHHH
Confidence 99885
No 25
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.57 E-value=0.26 Score=28.57 Aligned_cols=57 Identities=7% Similarity=0.093 Sum_probs=39.6
Q ss_pred ceEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhh
Q psy11515 4 EPYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRT 65 (117)
Q Consensus 4 ~V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~ 65 (117)
.|+|.- +|+.|.+.+..... +..++.|+.+.- ..+....+-+.++..++.|++|+..
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~--S~~i~~ml~~~~---~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQ--SKTIKNMLEDLG---DEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTT--SHHHHHHHHCTC---CCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHH--hHHHHHHHhhhc---ccccccccCccCHHHHHHHHHHHHh
Confidence 355555 89999999998876 478899987421 1111233447899999999999864
No 26
>KOG1724|consensus
Probab=93.34 E-value=0.33 Score=33.89 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=57.9
Q ss_pred CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccc---------------c----
Q psy11515 10 EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDID---------------L---- 70 (117)
Q Consensus 10 gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~---------------l---- 70 (117)
+|+.|.+...+..+. ..+..++...-. ..++...-.-..++..|..|+.|.+.-+-. +
T Consensus 13 DG~~f~ve~~~a~~s--~~i~~~~~~~~~-~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVARQS--QTISAHMIEDGC-ADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHHHHh--HHHHHHHHHcCC-CccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 899999999888775 456666543211 111112233458999999999999883321 1
Q ss_pred ------CCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 71 ------KSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 71 ------~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
+...+..++.+|.|+.|..|.+.++
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~c 120 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTC 120 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHH
Confidence 2235778999999999999999886
No 27
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=90.83 E-value=0.97 Score=28.99 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=40.6
Q ss_pred ceEEEeCC--eEEEeeHhhhccCCCchhhhHHhCcCCC-CCCCCccEEEcCChhhHHHHHHhH
Q psy11515 4 EPYLLIEI--PRFSTSIQTLMWVPDSFFTALLSGRISS-LKDETGAIFIDRDPKVFAIILNYL 63 (117)
Q Consensus 4 ~V~lnVgG--~~F~~~~~tL~~~p~s~f~~~f~~~~~~-~~~~~~~~fidr~p~~F~~IL~fl 63 (117)
.+.+.||. ++|.++...|. + ..|..++.....+ ..++++.+.|.++...|++|+..+
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~-h--p~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN-H--PLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC-c--hhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence 46677875 68999766654 3 3677777633222 233578899999999999999875
No 28
>KOG3473|consensus
Probab=90.68 E-value=1.7 Score=28.07 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=55.9
Q ss_pred cceEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCC-CCccEEEcCChhhHHHHHHhHhh-----Cc-ccc----
Q psy11515 3 LEPYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKD-ETGAIFIDRDPKVFAIILNYLRT-----RD-IDL---- 70 (117)
Q Consensus 3 ~~V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~-~~~~~fidr~p~~F~~IL~flr~-----g~-l~l---- 70 (117)
+-|+|.- +|+.|.+.|+.-+-. .-+++|+++....... .+..+|-|.+..+.+++..|+-. +. ..+
T Consensus 17 ~yVkLvS~Ddhefiikre~AmtS--gTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~ 94 (112)
T KOG3473|consen 17 MYVKLVSSDDHEFIIKREHAMTS--GTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFD 94 (112)
T ss_pred hheEeecCCCcEEEEeehhhhhh--hHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCC
Confidence 3456555 779999998876664 4688999865433333 34566779999999999999843 22 122
Q ss_pred -CCcCHHHHHHHHhhcC
Q psy11515 71 -KSTDLRTLRHEAEYYG 86 (117)
Q Consensus 71 -~~~~~~~l~~ea~~~~ 86 (117)
+.....+++.+|+|+.
T Consensus 95 IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLE 111 (112)
T ss_pred CCHHHHHHHHHHhhhhc
Confidence 3345667888888864
No 29
>KOG2838|consensus
Probab=87.60 E-value=1.4 Score=33.70 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=56.9
Q ss_pred ceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcC-CCCCCCCccEEEcCChhhHHHHHHhHhhCcccc---CCcCHHHHH
Q psy11515 4 EPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRI-SSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL---KSTDLRTLR 79 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~-~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l---~~~~~~~l~ 79 (117)
+|.|-..-+.|++||+.|++. .++|.-+.+.+- +...+-...-|.+.+-.+|+..|.++++|+.-. ...+...+.
T Consensus 132 dldiiFkeTcfpahRA~laaR-CpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~ 210 (401)
T KOG2838|consen 132 DLDIIFKETCFPAHRAFLAAR-CPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILE 210 (401)
T ss_pred cceeeeeeccchHHHHHHHhh-CcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHH
Confidence 445555678899999999975 568877665432 111222334466789999999999999999865 234555555
Q ss_pred HHHhhcCCh
Q psy11515 80 HEAEYYGIA 88 (117)
Q Consensus 80 ~ea~~~~l~ 88 (117)
+-++-||-.
T Consensus 211 QL~edFG~~ 219 (401)
T KOG2838|consen 211 QLCEDFGCF 219 (401)
T ss_pred HHHHhhCCc
Confidence 566777755
No 30
>PLN03090 auxin-responsive family protein; Provisional
Probab=78.27 E-value=7.9 Score=25.10 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=37.1
Q ss_pred eEEEeCC--eEEEeeHhhhccCCCchhhhHHhCcCCC-CCCCCccEEEcCChhhHHHHHHhH
Q psy11515 5 PYLLIEI--PRFSTSIQTLMWVPDSFFTALLSGRISS-LKDETGAIFIDRDPKVFAIILNYL 63 (117)
Q Consensus 5 V~lnVgG--~~F~~~~~tL~~~p~s~f~~~f~~~~~~-~~~~~~~~fidr~p~~F~~IL~fl 63 (117)
+.+-||. ++|.++-+-| ++| .|..++.....+ ..++++.+-|.++...|++++..+
T Consensus 45 ~aVyVG~~~~RfvVp~~~L-~hP--~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 45 FPVYVGENRSRYIVPISFL-THP--EFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred EEEEECCCCEEEEEEHHHc-CCH--HHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence 5567765 5899965544 444 677666532211 223457799999999999999765
No 31
>PLN03219 uncharacterized protein; Provisional
Probab=76.13 E-value=7.5 Score=25.34 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=38.0
Q ss_pred ceEEEeCC----eEEEeeHhhhccCCCchhhhHHhCcCCCC-CC-CCccEEEcCChhhHHHHHHhH
Q psy11515 4 EPYLLIEI----PRFSTSIQTLMWVPDSFFTALLSGRISSL-KD-ETGAIFIDRDPKVFAIILNYL 63 (117)
Q Consensus 4 ~V~lnVgG----~~F~~~~~tL~~~p~s~f~~~f~~~~~~~-~~-~~~~~fidr~p~~F~~IL~fl 63 (117)
.+.+-||. ++|.+..+-| ++| .|..++.....+. .+ +.+.+-|.++...|+.|+..-
T Consensus 43 h~aVYVG~~~E~kRFvVPi~yL-~hP--~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 43 HVAVYVGEQMEKKRFVVPISYL-NHP--LFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred eEEEEECCCCCceEEEEEHHHc-CCh--HHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 35567764 7999966555 444 6777765322111 22 358899999999999998753
No 32
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.73 E-value=11 Score=25.68 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=55.2
Q ss_pred CCcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCcccc----------
Q psy11515 1 MKLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL---------- 70 (117)
Q Consensus 1 ~~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l---------- 70 (117)
|++.+-.-.+|++|.+....-.+ +-+++.|+...- ..+- ..........+|..|+.|+..-+-.+
T Consensus 1 ~s~i~l~s~dge~F~vd~~iAer--SiLikN~l~d~~-~~n~--p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~r 75 (158)
T COG5201 1 MSMIELESIDGEIFRVDENIAER--SILIKNMLCDST-ACNY--PIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIR 75 (158)
T ss_pred CCceEEEecCCcEEEehHHHHHH--HHHHHHHhcccc-ccCC--CCcccchhHHHHHHHHHHHHhccccCCCccChHhhh
Confidence 45666677799999997544333 344555543211 1110 11233457789999999987644322
Q ss_pred ---------------CCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 71 ---------------KSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 71 ---------------~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
+...+.++.-+|.|+.+..|.+.|+
T Consensus 76 ks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gC 115 (158)
T COG5201 76 KSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGC 115 (158)
T ss_pred ccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHH
Confidence 1122445666899999999999887
No 33
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=71.46 E-value=3.4 Score=25.97 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=16.7
Q ss_pred cCChhhHHHHHHhHhhCccc
Q psy11515 50 DRDPKVFAIILNYLRTRDID 69 (117)
Q Consensus 50 dr~p~~F~~IL~flr~g~l~ 69 (117)
.-||++|+.|++.++.+.-+
T Consensus 40 ~~dp~VFriildLL~~nVsP 59 (88)
T PF12926_consen 40 PMDPEVFRIILDLLRLNVSP 59 (88)
T ss_pred CcChHHHHHHHHHHHcCCCH
Confidence 47999999999999886643
No 34
>PLN03220 uncharacterized protein; Provisional
Probab=69.70 E-value=12 Score=24.34 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=35.7
Q ss_pred eEEEeCC------eEEEeeHhhhccCCCchhhhHHhCcCCC-CCC-CCccEEEcCChhhHHHHHH
Q psy11515 5 PYLLIEI------PRFSTSIQTLMWVPDSFFTALLSGRISS-LKD-ETGAIFIDRDPKVFAIILN 61 (117)
Q Consensus 5 V~lnVgG------~~F~~~~~tL~~~p~s~f~~~f~~~~~~-~~~-~~~~~fidr~p~~F~~IL~ 61 (117)
+.+-||+ ++|.+..+-| ++| .|..++.....+ ..+ +++.+-|-+|...|..++.
T Consensus 40 ~aVyVGe~~~~e~kRFVVPv~yL-~hP--~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~ 101 (105)
T PLN03220 40 VAVYVGEQIEMEKKRFVVPISFL-NHP--SFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA 101 (105)
T ss_pred EEEEECCCCCccceEEEEEHHHc-CCh--HHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence 5566764 7999965554 444 677766532212 122 2588999999999999874
No 35
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=66.03 E-value=7.3 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=19.8
Q ss_pred CCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 71 KSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 71 ~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
+...+..++.+|.|++|..|.+.|.
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~ 36 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCC 36 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHH
Confidence 3345778999999999999999886
No 36
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=54.35 E-value=6 Score=14.42 Aligned_cols=6 Identities=67% Similarity=1.375 Sum_probs=4.3
Q ss_pred cccCCC
Q psy11515 111 YGYLPP 116 (117)
Q Consensus 111 ~~~~~~ 116 (117)
..||||
T Consensus 2 ~eYLpP 7 (9)
T PF02757_consen 2 NEYLPP 7 (9)
T ss_pred ccccCC
Confidence 368887
No 37
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=39.24 E-value=18 Score=22.41 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=20.0
Q ss_pred eEEEeCCeEEEeeHhhhccCCCchhhhHHhC
Q psy11515 5 PYLLIEIPRFSTSIQTLMWVPDSFFTALLSG 35 (117)
Q Consensus 5 V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~ 35 (117)
|+|.|||+.|+-. -+...+ +.|+..|..+
T Consensus 1 ItL~i~g~d~~F~-pt~~~y-n~yiN~~~~~ 29 (83)
T PF10963_consen 1 ITLTIGGTDFTFN-PTPTAY-NKYINEMAMD 29 (83)
T ss_pred CEEEECCEEEEec-cCHHHH-HHHHHHhccC
Confidence 6899999987773 344555 6778776543
No 38
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=38.00 E-value=45 Score=17.56 Aligned_cols=13 Identities=0% Similarity=-0.110 Sum_probs=10.5
Q ss_pred ceEEEeCCeEEEe
Q psy11515 4 EPYLLIEIPRFST 16 (117)
Q Consensus 4 ~V~lnVgG~~F~~ 16 (117)
.|+|.++|+...+
T Consensus 1 ~Vtv~~dG~~~~v 13 (43)
T PF03990_consen 1 PVTVTVDGKEKTV 13 (43)
T ss_pred CEEEEECCEEEEE
Confidence 4889999987765
No 39
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=36.84 E-value=30 Score=21.39 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=31.0
Q ss_pred CChhhHHHHHHhHhhCccccCCcCHHHHHH-HHhhcCChhHHHHHh
Q psy11515 51 RDPKVFAIILNYLRTRDIDLKSTDLRTLRH-EAEYYGIAPLVKRLV 95 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~~~~~~~l~~-ea~~~~l~~L~~~~~ 95 (117)
+|+.++.+++.|+.-+.+++...+...-.. +-.-+++..+.+.|.
T Consensus 21 ~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~ 66 (85)
T PF11971_consen 21 SDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQ 66 (85)
T ss_pred ccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHH
Confidence 799999999999999999875444322222 335566666666554
No 40
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.75 E-value=36 Score=21.66 Aligned_cols=15 Identities=7% Similarity=-0.062 Sum_probs=12.7
Q ss_pred CcceEEEeCCeEEEe
Q psy11515 2 KLEPYLLIEIPRFST 16 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~ 16 (117)
+.++.+||||-.++.
T Consensus 54 Dnr~Vfdi~GN~yRL 68 (98)
T COG4680 54 DNRVVFDIGGNKYRL 68 (98)
T ss_pred cceEEEEcCCCEEEE
Confidence 568999999988776
No 41
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=35.51 E-value=41 Score=20.13 Aligned_cols=14 Identities=7% Similarity=-0.024 Sum_probs=11.7
Q ss_pred ceEEEeCCeEEEee
Q psy11515 4 EPYLLIEIPRFSTS 17 (117)
Q Consensus 4 ~V~lnVgG~~F~~~ 17 (117)
.|.++|+|+.|+..
T Consensus 1 ~V~v~I~G~~y~i~ 14 (89)
T PF05164_consen 1 QVKVTILGREYRIK 14 (89)
T ss_dssp -EEEEETTEEEEEC
T ss_pred CeEEEECCEEEEee
Confidence 48899999999985
No 42
>KOG0511|consensus
Probab=35.34 E-value=29 Score=27.92 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred EEEeeHhhhccCCCchhhhHHhCcCCC---CCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHHhhcCChh
Q psy11515 13 RFSTSIQTLMWVPDSFFTALLSGRISS---LKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEAEYYGIAP 89 (117)
Q Consensus 13 ~F~~~~~tL~~~p~s~f~~~f~~~~~~---~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea~~~~l~~ 89 (117)
++++|++.+.++ +||..||.+.+.+ ...--+--.....-.+-+.++.|+|.-+-.+.......++--|.-..+.+
T Consensus 302 RyP~hla~i~R~--eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 302 RYPAHLARILRV--EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred cccHHHHHHHHH--HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
No 43
>PRK07283 hypothetical protein; Provisional
Probab=32.30 E-value=54 Score=20.58 Aligned_cols=35 Identities=9% Similarity=0.258 Sum_probs=22.7
Q ss_pred hHHHHHHhHhhCcccc-------CCcCHHHHHHHHhhcCChh
Q psy11515 55 VFAIILNYLRTRDIDL-------KSTDLRTLRHEAEYYGIAP 89 (117)
Q Consensus 55 ~F~~IL~flr~g~l~l-------~~~~~~~l~~ea~~~~l~~ 89 (117)
.++.++..++.|+..+ +......+.+.|++|+++-
T Consensus 22 G~~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~ 63 (98)
T PRK07283 22 GEELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEV 63 (98)
T ss_pred cHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCE
Confidence 3566777788777653 2334566667778887763
No 44
>KOG4350|consensus
Probab=31.93 E-value=30 Score=28.16 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 71 KSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 71 ~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
...++-.+..+|.+|++++|...|.
T Consensus 146 ~~~NvCmifdaA~ly~l~~Lt~~C~ 170 (620)
T KOG4350|consen 146 KNENVCMIFDAAYLYQLTDLTDYCM 170 (620)
T ss_pred cccceeeeeeHHHHhcchHHHHHHH
Confidence 4567778899999999999999997
No 45
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=29.47 E-value=78 Score=19.19 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=31.9
Q ss_pred CChhhHHHHHHhHhhCccccC----------CcCHHHHHHHHhhcCChhH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLK----------STDLRTLRHEAEYYGIAPL 90 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~----------~~~~~~l~~ea~~~~l~~L 90 (117)
+|+.++..+++.+..+.+... ..++..+++.|+-+|++..
T Consensus 30 ~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~ 79 (107)
T cd00014 30 KDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV 79 (107)
T ss_pred hchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee
Confidence 789999999999998887542 1467788888888888875
No 46
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=27.87 E-value=56 Score=18.22 Aligned_cols=11 Identities=18% Similarity=0.009 Sum_probs=8.8
Q ss_pred EEEeCCeEEEe
Q psy11515 6 YLLIEIPRFST 16 (117)
Q Consensus 6 ~lnVgG~~F~~ 16 (117)
.+|+||+.|.-
T Consensus 33 ~V~IgGHvFkG 43 (50)
T TIGR01624 33 TVTIGGHVFKG 43 (50)
T ss_pred EEEECceEEee
Confidence 57899999863
No 47
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=25.49 E-value=1.1e+02 Score=20.43 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=30.8
Q ss_pred CChhhHHHHHHhHhhCcccc------------CCcCHHHHHHHHhhcCChh---HHHHHh
Q psy11515 51 RDPKVFAIILNYLRTRDIDL------------KSTDLRTLRHEAEYYGIAP---LVKRLV 95 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l------------~~~~~~~l~~ea~~~~l~~---L~~~~~ 95 (117)
-+|..|..+++.+..|+|+. .......+.++-.++++.+ +.+.|.
T Consensus 40 i~~~~l~~li~l~~~~~Is~~~ak~ll~~~~~~~~~~~~ii~~~~l~~i~d~~el~~~v~ 99 (148)
T PF02637_consen 40 ISPEHLAELINLLEDGKISKKSAKELLRELLENGKSPEEIIEENGLWQISDEEELEALVE 99 (148)
T ss_dssp STHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTS-HHHHHHHTT---B--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 69999999999999999964 2456777888877888764 555554
No 48
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=25.40 E-value=15 Score=24.65 Aligned_cols=16 Identities=44% Similarity=0.781 Sum_probs=9.4
Q ss_pred CCccE--EEcCChhhHHH
Q psy11515 43 ETGAI--FIDRDPKVFAI 58 (117)
Q Consensus 43 ~~~~~--fidr~p~~F~~ 58 (117)
+.|.+ +||+||+....
T Consensus 83 ekg~~I~yID~~pe~l~r 100 (127)
T PF10357_consen 83 EKGWFISYIDRSPETLAR 100 (127)
T ss_dssp TTEEEEEE--SSHHHHHH
T ss_pred CCceEEEeeCCCHHHHHH
Confidence 45654 78999987654
No 49
>PF09035 Tn916-Xis: Excisionase from transposon Tn916; InterPro: IPR015122 The phage-encoded excisionase protein Tn916-Xis adopts a winged-helix structure that consists of a three-stranded anti-parallel beta-sheet that packs against a helix-turn-helix (HTH) motif and a third C-terminal alpha-helix. It is encoded for by Tn916, which also codes for the integrase Tn916-Int. The protein interacts with DNA by the insertion of helix alpha-2 into the major groove and the contact of the hairpin that connects strands beta-2 and beta-3 with the adjacent phosphodiester backbone and/or minor groove. Tn916-Xis stimulates phage excision and inhibits viral integration by stabilising distorted DNA structures []. ; PDB: 1Y6U_A.
Probab=24.52 E-value=51 Score=19.54 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=13.2
Q ss_pred CHHHHHHHHhhcCCh--hHHHHH
Q psy11515 74 DLRTLRHEAEYYGIA--PLVKRL 94 (117)
Q Consensus 74 ~~~~l~~ea~~~~l~--~L~~~~ 94 (117)
....+-|+|+||||. .|.+.+
T Consensus 12 ~~LTi~EAa~Y~gIG~~klr~l~ 34 (67)
T PF09035_consen 12 YTLTIEEAAEYFGIGEKKLRELA 34 (67)
T ss_dssp SEEEHHHHHHHT-S-HHHHHHHH
T ss_pred hccCHHHHHHHhCccHHHHHHHH
Confidence 344567888999998 466665
No 50
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=23.57 E-value=46 Score=21.21 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.8
Q ss_pred hhhHHHHHHhHhhCcc
Q psy11515 53 PKVFAIILNYLRTRDI 68 (117)
Q Consensus 53 p~~F~~IL~flr~g~l 68 (117)
+..|..|++|||-|--
T Consensus 2 ~~~l~~iv~WLRaGYP 17 (96)
T PF11829_consen 2 PSFLASIVDWLRAGYP 17 (96)
T ss_dssp HHHHHHHHHHHHHH-T
T ss_pred ChHHHHHHHHHHccCC
Confidence 5678999999999874
No 51
>PHA02114 hypothetical protein
Probab=21.73 E-value=1.4e+02 Score=19.47 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=27.5
Q ss_pred cCChhhHHHHHHhHhhCcccc------CCcCHHHHHHHHhhcCCh
Q psy11515 50 DRDPKVFAIILNYLRTRDIDL------KSTDLRTLRHEAEYYGIA 88 (117)
Q Consensus 50 dr~p~~F~~IL~flr~g~l~l------~~~~~~~l~~ea~~~~l~ 88 (117)
..+|++|+.+=.|-|.|.+.+ +......+..+.+-+|..
T Consensus 67 patpemf~dl~~fd~~gtivldvn~amsr~pwi~v~s~le~~g~~ 111 (127)
T PHA02114 67 PATPEMFDDLGAFDQYGTIVLDVNYAMSRAPWIKVISRLEEAGFN 111 (127)
T ss_pred CCCHHHHhhhhhHhhcCeEEEEehhhhccCcHHHHHHHHHhcCce
Confidence 479999999999999999876 223344455555555554
No 52
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=21.69 E-value=2.5e+02 Score=21.46 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=45.8
Q ss_pred ceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCC---CCCCCccEEEcCChhhHHHHHHhHhhCccccC----CcCHH
Q psy11515 4 EPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISS---LKDETGAIFIDRDPKVFAIILNYLRTRDIDLK----STDLR 76 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~---~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~----~~~~~ 76 (117)
++.+..+|.. +.++.|.+.=.+ +..-|...|.. ....+..+++-+..-++..+|--.|.|.++.+ -.+-.
T Consensus 52 R~~f~~~~~~--~~~~~l~~~f~~-~a~~f~m~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~ 128 (287)
T COG0788 52 RVEFEGEGGP--LDREALRAAFAP-LAEEFGMDWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHD 128 (287)
T ss_pred EEEEecCCCc--ccHHHHHHHHHH-HHHhhCceeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCH
Confidence 4444444433 566666654112 33333334432 12235667889999999999988889998652 11223
Q ss_pred HHHHHHhhcCCh
Q psy11515 77 TLRHEAEYYGIA 88 (117)
Q Consensus 77 ~l~~ea~~~~l~ 88 (117)
.+..-++.|+|+
T Consensus 129 dl~~~v~~~~IP 140 (287)
T COG0788 129 DLRPLVERFDIP 140 (287)
T ss_pred HHHHHHHHcCCC
Confidence 444455555543
No 53
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=21.26 E-value=1.2e+02 Score=19.46 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=23.7
Q ss_pred hHHHHHHhHhhCcccc---CCcCHHHHHHHHhhc
Q psy11515 55 VFAIILNYLRTRDIDL---KSTDLRTLRHEAEYY 85 (117)
Q Consensus 55 ~F~~IL~flr~g~l~l---~~~~~~~l~~ea~~~ 85 (117)
.|+.-+.+++.|+-.+ .......+.++.+||
T Consensus 23 G~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyY 56 (100)
T COG1911 23 GSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYY 56 (100)
T ss_pred ehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHH
Confidence 3667788999998654 445667888899999
No 54
>PRK14126 cell division protein ZapA; Provisional
Probab=20.85 E-value=1.1e+02 Score=18.77 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=13.9
Q ss_pred CcceEEEeCCeEEEee
Q psy11515 2 KLEPYLLIEIPRFSTS 17 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~ 17 (117)
|..|.+++.|+.|++.
T Consensus 6 k~~v~V~I~G~~Y~i~ 21 (85)
T PRK14126 6 KTRINVEIYGQQYTIV 21 (85)
T ss_pred CceEEEEECCEEEEec
Confidence 5679999999999994
Done!