Query psy11515
Match_columns 117
No_of_seqs 125 out of 1018
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:23:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 100.0 6E-30 2.1E-34 166.1 11.5 95 2-96 5-102 (107)
2 1t1d_A Protein (potassium chan 100.0 2.2E-28 7.6E-33 157.0 8.7 91 4-95 2-95 (100)
3 3kvt_A Potassium channel prote 100.0 1.8E-28 6.1E-33 161.0 7.6 93 2-95 4-98 (115)
4 1s1g_A Potassium voltage-gated 99.9 5.1E-28 1.7E-32 160.7 8.7 92 2-95 12-105 (124)
5 3drx_A BTB/POZ domain-containi 99.9 1.3E-27 4.5E-32 169.6 10.9 94 2-95 11-107 (202)
6 1nn7_A Potassium channel KV4.2 99.9 2.9E-28 9.8E-33 157.8 5.9 90 4-95 1-92 (105)
7 2nz0_B Potassium voltage-gated 99.9 5.5E-27 1.9E-31 158.6 8.7 92 2-95 34-127 (140)
8 2r9r_B Paddle chimera voltage 99.9 8.9E-22 3E-26 156.3 9.4 93 2-95 51-146 (514)
9 3hve_A Gigaxonin; ubiquitin, c 99.7 1.1E-17 3.9E-22 121.4 9.2 107 3-110 32-141 (256)
10 4eoz_A Speckle-type POZ protei 99.7 5.5E-18 1.9E-22 113.1 6.9 108 3-112 26-135 (145)
11 3htm_A Speckle-type POZ protei 99.7 2E-17 6.7E-22 113.2 8.9 106 3-110 35-142 (172)
12 2z8h_A Transcription regulator 99.7 4.3E-17 1.5E-21 108.8 9.8 97 3-104 37-137 (138)
13 1r29_A B-cell lymphoma 6 prote 99.7 6.2E-17 2.1E-21 106.4 9.8 89 3-95 30-120 (127)
14 3b84_A Zinc finger and BTB dom 99.7 8.8E-17 3E-21 104.8 9.0 87 3-95 25-111 (119)
15 2vpk_A Myoneurin; transcriptio 99.7 1.3E-16 4.5E-21 103.3 9.3 86 3-95 23-111 (116)
16 2ppi_A Gigaxonin; BTB domain, 99.7 9.8E-17 3.3E-21 108.1 9.0 92 3-95 48-140 (144)
17 2if5_A Zinc finger and BTB dom 99.7 1E-16 3.4E-21 104.3 8.4 90 3-95 26-116 (120)
18 2vkp_A BTB/POZ domain-containi 99.7 1.3E-16 4.4E-21 102.0 8.7 89 3-95 9-102 (109)
19 2yy9_A Zinc finger and BTB dom 99.7 7.5E-17 2.6E-21 107.4 7.7 87 3-95 26-112 (135)
20 3i3n_A Kelch-like protein 11; 99.7 4.7E-17 1.6E-21 119.5 7.0 105 3-110 33-149 (279)
21 1buo_A POZ domain, protein (pr 99.6 5.1E-16 1.8E-20 101.3 8.3 86 3-95 29-114 (121)
22 3ohu_A Transcription regulator 99.6 1.1E-16 3.8E-21 104.9 5.1 88 3-95 33-122 (125)
23 2q81_A MIZ-1 protein; BTB/POZ 99.6 6.5E-16 2.2E-20 100.7 7.6 87 3-96 28-114 (119)
24 2ihc_A Transcription regulator 99.6 2.1E-16 7E-21 103.7 5.2 88 3-95 30-119 (124)
25 3ga1_A Nucleus accumbens-assoc 99.6 2.6E-16 8.9E-21 103.8 5.3 86 3-95 34-121 (129)
26 3hqi_A Speckle-type POZ protei 99.6 1.4E-15 4.7E-20 113.1 6.7 106 3-110 175-282 (312)
27 3m5b_A Zinc finger and BTB dom 99.6 2.9E-15 9.8E-20 98.1 6.9 83 3-96 31-113 (119)
28 3fkc_A Transcriptional regulat 99.6 5.3E-15 1.8E-19 96.1 6.5 83 3-92 32-115 (116)
29 2ast_A S-phase kinase-associat 99.0 1.3E-09 4.5E-14 74.3 7.0 88 5-95 3-119 (159)
30 4ajy_C Transcription elongatio 98.6 1.5E-07 5.1E-12 59.1 7.2 80 4-87 3-97 (97)
31 1fs1_B SKP1, cyclin A/CDK2-ass 98.6 1.2E-07 4.1E-12 63.5 6.5 84 5-95 4-114 (141)
32 2p1m_A SKP1-like protein 1A; F 98.3 2.2E-07 7.6E-12 63.4 1.5 86 4-95 5-118 (160)
33 3v7d_A Suppressor of kinetocho 97.5 0.00052 1.8E-08 47.0 8.3 90 4-95 8-126 (169)
34 1hv2_A Elongin C, ELC1; protei 97.5 0.00037 1.3E-08 43.7 6.9 80 3-87 4-99 (99)
35 2fnj_C Transcription elongatio 97.5 0.00058 2E-08 42.5 7.5 81 5-87 3-96 (96)
36 1vcb_B Protein (elongin C); tu 96.5 0.0052 1.8E-07 39.3 5.3 82 4-87 18-112 (112)
37 1wyq_A Spectrin beta chain, br 45.0 8.8 0.0003 24.5 1.4 42 51-92 36-85 (127)
38 1pd7_B MAD1; PAH2, SIN3, eukar 43.4 10 0.00034 17.6 1.1 14 73-86 3-16 (26)
39 1i17_A Mouse doppel, prion-lik 36.6 10 0.00035 23.2 0.7 23 67-89 16-38 (107)
40 1bkr_A Spectrin beta chain; fi 36.5 11 0.00038 23.3 0.8 43 51-93 32-82 (109)
41 1lg4_A Doppel protein, prion-l 35.0 12 0.0004 23.7 0.7 23 67-89 42-64 (129)
42 1bhd_A Utrophin; calponin homo 33.9 6.9 0.00024 24.6 -0.4 43 51-93 37-87 (118)
43 2d89_A EHBP1 protein; all alph 31.3 17 0.00059 22.7 1.1 42 51-92 38-86 (119)
44 1t3u_A Conserved hypothetical 29.6 37 0.0013 20.5 2.4 14 3-16 5-18 (104)
45 1wyl_A NEDD9 interacting prote 29.4 14 0.00047 23.1 0.4 42 51-92 36-85 (116)
46 2d88_A Protein mical-3; all al 29.1 10 0.00035 23.9 -0.2 43 51-93 38-88 (121)
47 3ol3_A Putative uncharacterize 28.3 23 0.00077 22.2 1.2 18 52-69 9-26 (107)
48 1rm6_C 4-hydroxybenzoyl-COA re 25.8 38 0.0013 22.3 2.1 17 1-17 1-17 (161)
49 3c0t_B Mediator of RNA polymer 23.3 56 0.0019 15.4 1.8 16 54-69 8-23 (33)
50 2v1n_A KIN17, protein KIN homo 22.9 9.6 0.00033 24.1 -1.2 15 43-57 85-101 (111)
51 2d87_A Smoothelin splice isofo 22.3 20 0.00069 22.8 0.2 42 51-92 36-85 (128)
52 3hxi_C Eukaryotic translation 20.6 68 0.0023 14.0 1.7 17 10-26 2-18 (21)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=166.07 Aligned_cols=95 Identities=37% Similarity=0.439 Sum_probs=84.6
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCC--CCCCCCccEEEcCChhhHHHHHHhHhhCccccC-CcCHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRIS--SLKDETGAIFIDRDPKVFAIILNYLRTRDIDLK-STDLRTL 78 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~--~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~-~~~~~~l 78 (117)
+..|+|||||++|.|+++||+++|+|+|++||+++.. ...++++++||||||.+|++||+|||+|+++++ +.+...+
T Consensus 5 ~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~~~~l 84 (107)
T 3drz_A 5 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV 84 (107)
T ss_dssp CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred CCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCCHHHH
Confidence 3579999999999999999999999999999986532 234567999999999999999999999999884 5678999
Q ss_pred HHHHhhcCChhHHHHHhh
Q psy11515 79 RHEAEYYGIAPLVKRLVL 96 (117)
Q Consensus 79 ~~ea~~~~l~~L~~~~~~ 96 (117)
++||+||||++|++.|..
T Consensus 85 ~~Ea~fy~l~~L~~~l~~ 102 (107)
T 3drz_A 85 LEEAEFYNITSLIKLVKD 102 (107)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 999999999999999984
No 2
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=99.95 E-value=2.2e-28 Score=156.98 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=78.4
Q ss_pred ceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhh-Ccccc-CCcCHHHHHHH
Q psy11515 4 EPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRT-RDIDL-KSTDLRTLRHE 81 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~-g~l~l-~~~~~~~l~~e 81 (117)
.|+|||||++|+|+++||+++|+|+|++|++.. ....++++++||||||.+|++||+|||+ |++++ ++.+...+++|
T Consensus 2 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~E 80 (100)
T 1t1d_A 2 RVVINVSGLRFETQLKTLNQFPDTLLGNPQKRN-RYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE 80 (100)
T ss_dssp EEEEEETTEEEEEEHHHHHTSTTSTTTCHHHHG-GGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCCccccchhccc-cccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHH
Confidence 589999999999999999999999999998742 2234568999999999999999999999 99988 46789999999
Q ss_pred HhhcCChhH-HHHHh
Q psy11515 82 AEYYGIAPL-VKRLV 95 (117)
Q Consensus 82 a~~~~l~~L-~~~~~ 95 (117)
|+||||.++ ++.|.
T Consensus 81 a~fy~i~~~~~~~~~ 95 (100)
T 1t1d_A 81 IKFYELGENAFERYR 95 (100)
T ss_dssp HHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHH
Confidence 999999974 44443
No 3
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=99.95 E-value=1.8e-28 Score=161.01 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=80.6
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccC-CcCHHHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLK-STDLRTLRH 80 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~-~~~~~~l~~ 80 (117)
+..|+|||||++|.|+++||+++|+|+|++|+++. ....++++++||||||.+|++||+|||+|+++++ +.+...+++
T Consensus 4 ~~~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~-~~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~ 82 (115)
T 3kvt_A 4 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGM-LNYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVCGPLFEE 82 (115)
T ss_dssp CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTS-TTEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHH
T ss_pred CCEEEEEECCEEEEecHHHHhcCCCccHHHHhcCC-CCCCCCCCcEEEecChHHHHHHHHHhcCCCCCCCCcccHHHHHH
Confidence 36799999999999999999999999999998753 2234578999999999999999999999999885 568899999
Q ss_pred HHhhcCChhH-HHHHh
Q psy11515 81 EAEYYGIAPL-VKRLV 95 (117)
Q Consensus 81 ea~~~~l~~L-~~~~~ 95 (117)
||+||||++. ++.|+
T Consensus 83 Ea~fy~i~~~~l~~CC 98 (115)
T 3kvt_A 83 ELEFWGLDSNQVEPCC 98 (115)
T ss_dssp HHHHHTCCGGGBCGGG
T ss_pred HHHHhCCChHHHHHHH
Confidence 9999999964 34444
No 4
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=99.95 E-value=5.1e-28 Score=160.71 Aligned_cols=92 Identities=27% Similarity=0.418 Sum_probs=80.1
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccC-CcCHHHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLK-STDLRTLRH 80 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~-~~~~~~l~~ 80 (117)
+..|+|||||++|.|+++||++.|+|+|++ ++......++++++||||||.+|++||+|||+|++.++ +.++..+++
T Consensus 12 ~~~V~LNVGG~~F~t~~~TL~~~p~S~L~~--~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 12 DELIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp CCEEEEEETTEEEEEEHHHHTTSTTSSTTS--SGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred CCEEEEEeCCEEEEEeHHHHhcCCCceecc--cCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 357999999999999999999999999987 44444455678999999999999999999999999984 568999999
Q ss_pred HHhhcCChhH-HHHHh
Q psy11515 81 EAEYYGIAPL-VKRLV 95 (117)
Q Consensus 81 ea~~~~l~~L-~~~~~ 95 (117)
||+||||.++ ++.|+
T Consensus 90 Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 90 ELAFYGILPEIIGDCC 105 (124)
T ss_dssp HHHHTTCCGGGBCHHH
T ss_pred HHHHcCCChHHHHHHH
Confidence 9999999987 46654
No 5
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=99.95 E-value=1.3e-27 Score=169.63 Aligned_cols=94 Identities=38% Similarity=0.466 Sum_probs=83.5
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcC--CCCCCCCccEEEcCChhhHHHHHHhHhhCcccc-CCcCHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRI--SSLKDETGAIFIDRDPKVFAIILNYLRTRDIDL-KSTDLRTL 78 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~--~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l-~~~~~~~l 78 (117)
+..|+|||||++|.|+++||+++|+|+|++||+++. ....+++++|||||||.+|++||+|||+|++++ ++.+...+
T Consensus 11 ~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP~~~~~~~l 90 (202)
T 3drx_A 11 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV 90 (202)
T ss_dssp CCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred CCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCCCCCCCHHHH
Confidence 457999999999999999999999999999998653 223457899999999999999999999999998 46677899
Q ss_pred HHHHhhcCChhHHHHHh
Q psy11515 79 RHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 79 ~~ea~~~~l~~L~~~~~ 95 (117)
++||+||||.+|++.|.
T Consensus 91 ~eEA~FygL~~Lv~~l~ 107 (202)
T 3drx_A 91 LEEAEFYNITSLIKLVK 107 (202)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHH
Confidence 99999999999999997
No 6
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=99.95 E-value=2.9e-28 Score=157.75 Aligned_cols=90 Identities=28% Similarity=0.406 Sum_probs=77.6
Q ss_pred ceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccC-CcCHHHHHHHH
Q psy11515 4 EPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLK-STDLRTLRHEA 82 (117)
Q Consensus 4 ~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~-~~~~~~l~~ea 82 (117)
.|+|||||++|+|+++||++.|+|+|+++ +......++++++||||||.+|++||+|||+|+++++ +.++..+++||
T Consensus 1 ~V~LNVGG~~f~t~~~TL~~~p~s~L~~~--~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea 78 (105)
T 1nn7_A 1 LIVLNVSGTRFQTWQDTLERYPDTLLGSS--ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEEL 78 (105)
T ss_dssp CEEEEETTEEEEECHHHHHTSCSSSTTSG--GGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhcCCCcccccc--CCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHH
Confidence 48999999999999999999999999883 3333344568999999999999999999999999884 56799999999
Q ss_pred hhcCChhH-HHHHh
Q psy11515 83 EYYGIAPL-VKRLV 95 (117)
Q Consensus 83 ~~~~l~~L-~~~~~ 95 (117)
+||||+++ ++.|+
T Consensus 79 ~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 79 AFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHTCCSCCBCHHH
T ss_pred HHcCCCHHHHHHHH
Confidence 99999976 45554
No 7
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=99.94 E-value=5.5e-27 Score=158.55 Aligned_cols=92 Identities=27% Similarity=0.418 Sum_probs=80.0
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccC-CcCHHHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLK-STDLRTLRH 80 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~-~~~~~~l~~ 80 (117)
+..|+|||||++|+|+++||+++|+|+|++ ++......+++++|||||||.+|++||+|||+|+++++ +.++..+++
T Consensus 34 ~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~--~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p~~~~~~~l~e 111 (140)
T 2nz0_B 34 DELIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 111 (140)
T ss_dssp CCEEEEEETTEEEEEEHHHHHTCTTSTTTS--GGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred CCEEEEEECCEEEEeeHHHHhcCCCeeecc--cCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence 357999999999999999999999999988 44444455678999999999999999999999999984 568999999
Q ss_pred HHhhcCChhH-HHHHh
Q psy11515 81 EAEYYGIAPL-VKRLV 95 (117)
Q Consensus 81 ea~~~~l~~L-~~~~~ 95 (117)
||+||||.++ ++.|+
T Consensus 112 Ea~fy~i~~l~l~~CC 127 (140)
T 2nz0_B 112 ELAFYGILPEIIGDCC 127 (140)
T ss_dssp HHHHHTCCGGGBCTTT
T ss_pred HHHHcCCChHHHHHHH
Confidence 9999999986 45554
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.86 E-value=8.9e-22 Score=156.32 Aligned_cols=93 Identities=18% Similarity=0.294 Sum_probs=79.7
Q ss_pred CcceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhh-Ccccc-CCcCHHHHH
Q psy11515 2 KLEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRT-RDIDL-KSTDLRTLR 79 (117)
Q Consensus 2 ~~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~-g~l~l-~~~~~~~l~ 79 (117)
+-.|+|||||++|+|+++||+++|+|+|++++.. .....+++++|||||||.+|++||+|||+ |++++ ++.+...+.
T Consensus 51 ~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~-~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~ 129 (514)
T 2r9r_B 51 SERVVINISGLRFETQLKTLAQFPETLLGDPKKR-MRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFS 129 (514)
T ss_dssp CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHH-GGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHH
T ss_pred CCEEEEEeCCEEEEecHHHHhcCCCCcccccccC-CcccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCcccHHHHH
Confidence 3479999999999999999999999999998863 22344568999999999999999999999 99988 467899999
Q ss_pred HHHhhcCChhH-HHHHh
Q psy11515 80 HEAEYYGIAPL-VKRLV 95 (117)
Q Consensus 80 ~ea~~~~l~~L-~~~~~ 95 (117)
+||+||||+++ .+.+.
T Consensus 130 ~E~~f~~i~~~~~~~~~ 146 (514)
T 2r9r_B 130 EEIRFYELGEEAMEMFR 146 (514)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHhcCCCHHHHhhhh
Confidence 99999999964 34443
No 9
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.73 E-value=1.1e-17 Score=121.40 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=86.3
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE-cCChhhHHHHHHhHhhCccccCCcCHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI-DRDPKVFAIILNYLRTRDIDLKSTDLRTLRHE 81 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi-dr~p~~F~~IL~flr~g~l~l~~~~~~~l~~e 81 (117)
.||+|.|||+.|.+||.+|++. +.||++||++++.........+-+ |.+|..|+.+++|+|+|++.++..++..++..
T Consensus 32 ~Dv~l~v~~~~f~~Hr~vLaa~-S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~ 110 (256)
T 3hve_A 32 CDAHLVLDGEEIPVQKNILAAA-SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQA 110 (256)
T ss_dssp CCEEEEETTEEEEECHHHHHTT-CHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHH
T ss_pred cceEEEECCEEEechHHHHHHc-CHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHH
Confidence 4899999999999999999998 799999999876422222334433 78999999999999999999988899999999
Q ss_pred HhhcCChhHHHHHh--hhhhcCCCCcccccc
Q psy11515 82 AEYYGIAPLVKRLV--LCEDLNQSSCGDVLF 110 (117)
Q Consensus 82 a~~~~l~~L~~~~~--~~~~~~~~~c~~~~~ 110 (117)
|.+|+++.+++.|. ..+.++++||..++-
T Consensus 111 A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~ 141 (256)
T 3hve_A 111 ADLLLLTDLKTLCCEFLEGCIAAENCIGIRD 141 (256)
T ss_dssp HHHHTCHHHHHHHHHHHHHTCCSSTTHHHHH
T ss_pred HHHHChHHHHHHHHHHHHhhCCHhhHHHHHH
Confidence 99999999999998 566899999998754
No 10
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=113.05 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=79.7
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. +.||++||++++.+.. .....+-|.+|..|+.+|+|+|+|++.++...+..+++.|
T Consensus 26 ~Dv~l~v~~~~~~~Hk~iL~~~-S~~F~~~f~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A 103 (145)
T 4eoz_A 26 TDCCLCVAGQEFQAHKAILAAR-SPVFSAMFEHEMEESK-KNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAA 103 (145)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHHSSSHHHH-HTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHH
T ss_pred cceEEEECCEEEEeehHHHHHc-CHHHHHHHcCCCcCCC-CceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHH
Confidence 4899999999999999999998 7999999998764322 1233344789999999999999999998888999999999
Q ss_pred hhcCChhHHHHHh--hhhhcCCCCcccccccc
Q psy11515 83 EYYGIAPLVKRLV--LCEDLNQSSCGDVLFYG 112 (117)
Q Consensus 83 ~~~~l~~L~~~~~--~~~~~~~~~c~~~~~~~ 112 (117)
.+|+++.|.+.|+ ..+.++.+||..++-.+
T Consensus 104 ~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A 135 (145)
T 4eoz_A 104 DKYALERLKVMCEDALCSNLSVENAAEILILA 135 (145)
T ss_dssp HHTTCHHHHHHHHCC-----------------
T ss_pred HHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999998 46678999999886544
No 11
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=113.19 Aligned_cols=106 Identities=18% Similarity=0.264 Sum_probs=91.9
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+++.+... ....+-|.+|..|+.+|+|+|+|++.++..++..+++.|
T Consensus 35 ~Dv~l~v~~~~~~~Hk~iL~~~-S~~F~~~f~~~~~e~~~-~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A 112 (172)
T 3htm_A 35 TDCCLCVAGQEFQAHKAILAAR-SPVFSAMFEHEMEESKK-NRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAA 112 (172)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHHSCCCGGGT-TEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHH
T ss_pred cceEEEECCEEEEeeHHHHHHc-CHHHHHHHccCccccCC-CeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 4899999999999999999998 79999999987754332 233344789999999999999999998888999999999
Q ss_pred hhcCChhHHHHHh--hhhhcCCCCcccccc
Q psy11515 83 EYYGIAPLVKRLV--LCEDLNQSSCGDVLF 110 (117)
Q Consensus 83 ~~~~l~~L~~~~~--~~~~~~~~~c~~~~~ 110 (117)
.+|+++.|.+.|+ ..+.++..||..++-
T Consensus 113 ~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 113 DKYALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998 456789999987754
No 12
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.72 E-value=4.3e-17 Score=108.78 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=84.7
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE--cCChhhHHHHHHhHhhCccccCCcCHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI--DRDPKVFAIILNYLRTRDIDLKSTDLRTLRH 80 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi--dr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ 80 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+++.. ...+-+ +.++..|+.+|+|+|+|++.++..++..++.
T Consensus 37 ~Dv~l~v~~~~f~aHk~vLaa~-S~yF~~~f~~~~~e----~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~ 111 (138)
T 2z8h_A 37 CDVTVLVEGQRFRAHRSVLAAC-SSYFHSRIVGQTDA----ELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCR 111 (138)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHTTCCCT----TEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHH
T ss_pred cCeEEEECCEEEechHHHHHHc-CHHHHHHHhcCCCC----CceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHH
Confidence 4899999999999999999998 79999999976632 233444 6799999999999999999998889999999
Q ss_pred HHhhcCChhHHHHHh--hhhhcCCCC
Q psy11515 81 EAEYYGIAPLVKRLV--LCEDLNQSS 104 (117)
Q Consensus 81 ea~~~~l~~L~~~~~--~~~~~~~~~ 104 (117)
.|++|+++.|++.|. ..++++.+|
T Consensus 112 ~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 112 CVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHhCCHHHHHHHHHHHHHhccccc
Confidence 999999999999998 466777766
No 13
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.71 E-value=6.2e-17 Score=106.39 Aligned_cols=89 Identities=16% Similarity=0.371 Sum_probs=80.6
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE--cCChhhHHHHHHhHhhCccccCCcCHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI--DRDPKVFAIILNYLRTRDIDLKSTDLRTLRH 80 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi--dr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ 80 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+++.+ ....+-+ |.+|..|+.+|+|+|+|++.++..++..+++
T Consensus 30 ~Dv~l~v~~~~~~aHk~iLaa~-S~~F~~~f~~~~~e---~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~ 105 (127)
T 1r29_A 30 TDVVIVVSREQFRAHKTVLMAC-SGLFYSIFTDQLKR---NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMA 105 (127)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHTSTTTT---TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHH
T ss_pred CCEEEEECCEEEehHHHHHHHh-CHHHHHHhcCCccC---CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHH
Confidence 4899999999999999999998 79999999987754 2345555 7899999999999999999998889999999
Q ss_pred HHhhcCChhHHHHHh
Q psy11515 81 EAEYYGIAPLVKRLV 95 (117)
Q Consensus 81 ea~~~~l~~L~~~~~ 95 (117)
.|.+|+++.|++.|.
T Consensus 106 ~A~~~~i~~L~~~c~ 120 (127)
T 1r29_A 106 TAMYLQMEHVVDTCR 120 (127)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999999997
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=104.83 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=78.1
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+++ ......-|.+|+.|+.+|+|+|+|++.++..++..++..|
T Consensus 25 ~Dv~l~v~~~~f~aHk~vLaa~-S~yF~~~f~~~~-----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A 98 (119)
T 3b84_A 25 CDATLDVGGLVFKAHWSVLACC-SHFFQSLYGDGS-----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAA 98 (119)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHTTTT-----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHH
T ss_pred cceEEEECCEEEEeeHHHHhhc-CHHHHHHHCCCC-----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 4899999999999999999998 799999998764 2233345788999999999999999999888999999999
Q ss_pred hhcCChhHHHHHh
Q psy11515 83 EYYGIAPLVKRLV 95 (117)
Q Consensus 83 ~~~~l~~L~~~~~ 95 (117)
++|+++.|.+.|+
T Consensus 99 ~~~~i~~L~~~C~ 111 (119)
T 3b84_A 99 RELRVPEAVELCQ 111 (119)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCcHHHHHHHH
Confidence 9999999999997
No 15
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=103.31 Aligned_cols=86 Identities=16% Similarity=0.353 Sum_probs=76.9
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE---cCChhhHHHHHHhHhhCccccCCcCHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI---DRDPKVFAIILNYLRTRDIDLKSTDLRTLR 79 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi---dr~p~~F~~IL~flr~g~l~l~~~~~~~l~ 79 (117)
.||+|.|||+.|.+||.+|++. +.||++||.++ . ...+.+ |.+|+.|+.+|+|+|+|++.++..++..++
T Consensus 23 ~Dv~l~v~~~~~~aHk~vLaa~-S~yF~~~f~~~-----~-~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll 95 (116)
T 2vpk_A 23 CDCTIVIGEFQFKAHRNVLASF-SEYFGAIYRST-----S-ENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIH 95 (116)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHTTC-----C-CSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHH
T ss_pred CcEEEEECCEEEeccHHHHhhc-CHHHHHHHcCC-----C-CCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 4899999999999999999998 79999999865 1 233433 589999999999999999999888999999
Q ss_pred HHHhhcCChhHHHHHh
Q psy11515 80 HEAEYYGIAPLVKRLV 95 (117)
Q Consensus 80 ~ea~~~~l~~L~~~~~ 95 (117)
+.|++|+++.|++.|.
T Consensus 96 ~~A~~~~i~~L~~~C~ 111 (116)
T 2vpk_A 96 QAADYLKVEEVVTKCK 111 (116)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 9999999999999997
No 16
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.69 E-value=9.8e-17 Score=108.08 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=78.6
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE-cCChhhHHHHHHhHhhCccccCCcCHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI-DRDPKVFAIILNYLRTRDIDLKSTDLRTLRHE 81 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi-dr~p~~F~~IL~flr~g~l~l~~~~~~~l~~e 81 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+++.........+-+ |.+|..|+.+|+|+|+|++.++..++..++..
T Consensus 48 ~Dv~l~v~~~~f~aHk~vLaa~-S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~ 126 (144)
T 2ppi_A 48 CDAHLVLDGEEIPVQKNILAAA-SPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQA 126 (144)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHH
T ss_pred cceEEEECCEEEehHHHHHHHc-CHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4899999999999999999998 799999999876542222344444 78999999999999999999988899999999
Q ss_pred HhhcCChhHHHHHh
Q psy11515 82 AEYYGIAPLVKRLV 95 (117)
Q Consensus 82 a~~~~l~~L~~~~~ 95 (117)
|.+|+++.|++.|+
T Consensus 127 A~~l~i~~L~~~C~ 140 (144)
T 2ppi_A 127 ADLLLLTDLKTLCC 140 (144)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhCcHHHHHHHH
Confidence 99999999999997
No 17
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.69 E-value=1e-16 Score=104.32 Aligned_cols=90 Identities=11% Similarity=0.184 Sum_probs=76.8
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccE-EEcCChhhHHHHHHhHhhCccccCCcCHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAI-FIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHE 81 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~-fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~e 81 (117)
.||+|.|||+.|.+||.+|++. +.||++||++++.+.. ...+ .-|.+|..|+.+|+|+|+|++.++..++..+++.
T Consensus 26 ~Dv~l~v~~~~~~aHk~vLaa~-S~~F~~~f~~~~~e~~--~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~ 102 (120)
T 2if5_A 26 CDVVILVEGREFPTHRSVLAAC-SQYFKKLFTSGAVVDQ--QNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSA 102 (120)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHHC-----C--CSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHH
T ss_pred CCeEEEECCEEEeHHHHHHHHh-CHHHHHHhcCCccccC--CceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 5899999999999999999998 7999999998775432 2333 3468999999999999999999988899999999
Q ss_pred HhhcCChhHHHHHh
Q psy11515 82 AEYYGIAPLVKRLV 95 (117)
Q Consensus 82 a~~~~l~~L~~~~~ 95 (117)
|.+|+++.|++.|+
T Consensus 103 A~~~~i~~L~~~C~ 116 (120)
T 2if5_A 103 ARLLEIPAVSHVCA 116 (120)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 99999999999997
No 18
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=102.01 Aligned_cols=89 Identities=25% Similarity=0.378 Sum_probs=75.9
Q ss_pred cceEEEeCC----eEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE-cCChhhHHHHHHhHhhCccccCCcCHHH
Q psy11515 3 LEPYLLIEI----PRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI-DRDPKVFAIILNYLRTRDIDLKSTDLRT 77 (117)
Q Consensus 3 ~~V~lnVgG----~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi-dr~p~~F~~IL~flr~g~l~l~~~~~~~ 77 (117)
.||+|.||| +.|.+||.+|++. +.||++||++++.+.. ..+-+ |.+|..|+.+|+|+|+|++.++..++..
T Consensus 9 ~Dv~l~v~~~~~~~~~~~Hk~iLa~~-S~~F~~~f~~~~~e~~---~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ 84 (109)
T 2vkp_A 9 ADVHFVVGPPGATRTVPAHKYVLAVG-SSVFYAMFYGDLAEVK---SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLA 84 (109)
T ss_dssp CCEEEEESSTTSCEEEEECHHHHHHH-CHHHHHHHC------C---CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHH
T ss_pred ccEEEEECCCCCcEEEEeeHHHHHHc-CHHHHHHhcCCcccCC---CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHH
Confidence 489999988 9999999999988 7999999998775433 34444 7899999999999999999998889999
Q ss_pred HHHHHhhcCChhHHHHHh
Q psy11515 78 LRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 78 l~~ea~~~~l~~L~~~~~ 95 (117)
++..|++|+++.|.+.|.
T Consensus 85 ll~~A~~~~~~~L~~~c~ 102 (109)
T 2vkp_A 85 TLYAAKKYIVPALAKACV 102 (109)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHH
Confidence 999999999999999997
No 19
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.69 E-value=7.5e-17 Score=107.42 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=76.1
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+++ .....+-|.+++.|+.+|+|+|+|++.++..++..++..|
T Consensus 26 ~Dv~l~v~~~~f~aHk~vLaa~-S~yF~~mf~~~~-----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A 99 (135)
T 2yy9_A 26 CDATLDVGGLVFKAHWSVLACC-SHFFQRIYGDGT-----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAA 99 (135)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHTCC---------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHH
T ss_pred cceEEEECCEEEehHHHHHHHh-CHHHHHHHcCCC-----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999998 799999998765 2233345789999999999999999999888999999999
Q ss_pred hhcCChhHHHHHh
Q psy11515 83 EYYGIAPLVKRLV 95 (117)
Q Consensus 83 ~~~~l~~L~~~~~ 95 (117)
++|+++.|++.|+
T Consensus 100 ~~l~i~~L~~~C~ 112 (135)
T 2yy9_A 100 KELRVPEAVELCQ 112 (135)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCcHHHHHHHH
Confidence 9999999999998
No 20
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.68 E-value=4.7e-17 Score=119.54 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=87.3
Q ss_pred cceEEEeC---CeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE-------cCChhhHHHHHHhHhhCccccCC
Q psy11515 3 LEPYLLIE---IPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI-------DRDPKVFAIILNYLRTRDIDLKS 72 (117)
Q Consensus 3 ~~V~lnVg---G~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi-------dr~p~~F~~IL~flr~g~l~l~~ 72 (117)
.||+|.|| |+.|.+||.+|++. +.||++||++++.+.. ...+-+ +.+|..|+.+++|+|+|++.++.
T Consensus 33 ~Dv~l~v~~~~~~~f~~Hr~vLaa~-S~yF~~mf~~~~~e~~--~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~ 109 (279)
T 3i3n_A 33 CDITLCFGGAGGREFRAHRSVLAAA-TEYFTPLLSGQFSESR--SGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVST 109 (279)
T ss_dssp CCEEEECC----CEEEECHHHHHHH-CTTSGGGCCC----------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEET
T ss_pred CCeEEEEcCCCCeEEehHHHHHHHc-CHHHHHHhcCCCcccc--CCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCH
Confidence 58999998 99999999999998 7999999998875433 334444 78999999999999999999988
Q ss_pred cCHHHHHHHHhhcCChhHHHHHh--hhhhcCCCCcccccc
Q psy11515 73 TDLRTLRHEAEYYGIAPLVKRLV--LCEDLNQSSCGDVLF 110 (117)
Q Consensus 73 ~~~~~l~~ea~~~~l~~L~~~~~--~~~~~~~~~c~~~~~ 110 (117)
.++..++..|.+|+++.|.+.|. ..+.++++||..++-
T Consensus 110 ~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~ 149 (279)
T 3i3n_A 110 GSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS 149 (279)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 89999999999999999999998 566899999998753
No 21
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.65 E-value=5.1e-16 Score=101.35 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=77.1
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. ++||++||+++ ......-|.+|+.|+.+|+|+|+|++.++..++..++..|
T Consensus 29 ~Dv~l~v~~~~f~aHk~vLaa~-S~yF~~~f~~~------~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A 101 (121)
T 1buo_A 29 CDVVIMVDSQEFHAHRTVLACT-SKMFEILFHRN------SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101 (121)
T ss_dssp CCEEEEESSCEEEECHHHHHHH-CHHHHHHTTSC------CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHH
T ss_pred CCEEEEECCEEEehhHHHHhhc-CHHHHHHHcCC------CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHH
Confidence 4899999999999999999998 79999999853 2233345789999999999999999999888999999999
Q ss_pred hhcCChhHHHHHh
Q psy11515 83 EYYGIAPLVKRLV 95 (117)
Q Consensus 83 ~~~~l~~L~~~~~ 95 (117)
++|+++.|.+.|.
T Consensus 102 ~~~~i~~L~~~c~ 114 (121)
T 1buo_A 102 EILEIEYLEEQCL 114 (121)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHHCCHHHHHHHH
Confidence 9999999999997
No 22
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.65 E-value=1.1e-16 Score=104.91 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=78.0
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE-c-CChhhHHHHHHhHhhCccccCCcCHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI-D-RDPKVFAIILNYLRTRDIDLKSTDLRTLRH 80 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi-d-r~p~~F~~IL~flr~g~l~l~~~~~~~l~~ 80 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+.+.. ...+.+ | .++..|+.+|+|+|+|++.++..++..+++
T Consensus 33 ~Dv~l~v~~~~f~aHk~vLaa~-S~yF~~~f~~~~~e----~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~ 107 (125)
T 3ohu_A 33 CDVTLIVERKEFRAHRAVLAAC-SEYFWQALVGQTKN----DLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIR 107 (125)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-BHHHHHHHTTCCCS----SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHH
T ss_pred cceEEEECCEEEechHHHHHHc-CHHHHHHhcCCCCC----CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHH
Confidence 4899999999999999999998 79999999976633 334443 5 899999999999999999998889999999
Q ss_pred HHhhcCChhHHHHHh
Q psy11515 81 EAEYYGIAPLVKRLV 95 (117)
Q Consensus 81 ea~~~~l~~L~~~~~ 95 (117)
.|++|+++.|++.|+
T Consensus 108 ~A~~l~i~~L~~~C~ 122 (125)
T 3ohu_A 108 CAEFLRMHNLEDSCF 122 (125)
T ss_dssp HHHHHTBSSCTTSSC
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999988875
No 23
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.64 E-value=6.5e-16 Score=100.67 Aligned_cols=87 Identities=9% Similarity=0.168 Sum_probs=75.8
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. +.||++||+++. .....-+-++..|+.+|+|+|+|++.++..++..++..|
T Consensus 28 ~Dv~l~v~~~~~~aHk~vLaa~-S~yF~~~f~~~~------~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A 100 (119)
T 2q81_A 28 CDCTFVVDGVHFKAHKAVLAAC-SEYFKMLFVDQK------DVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVA 100 (119)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHHHHCC------SGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHH
T ss_pred cceEEEECCEEEehhHHHHHHc-CHHHHHHHcCCC------CEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 4899999999999999999998 799999998531 111223468999999999999999999888999999999
Q ss_pred hhcCChhHHHHHhh
Q psy11515 83 EYYGIAPLVKRLVL 96 (117)
Q Consensus 83 ~~~~l~~L~~~~~~ 96 (117)
++|++++|++.|+.
T Consensus 101 ~~l~i~~L~~~C~~ 114 (119)
T 2q81_A 101 TFLQMQDIITACHA 114 (119)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 99999999999973
No 24
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=103.74 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=76.8
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE--cCChhhHHHHHHhHhhCccccCCcCHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI--DRDPKVFAIILNYLRTRDIDLKSTDLRTLRH 80 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi--dr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ 80 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+++.. ...+-+ +.+++.|+.+|+|+|+|++.++..++..+++
T Consensus 30 ~Dv~l~v~~~~~~aHk~vLaa~-S~yF~~mf~~~~~e----~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~ 104 (124)
T 2ihc_A 30 CDVTIFVEGQRFRAHRSVLAAC-SSYFHSRIVGQADG----ELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCK 104 (124)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-BHHHHHHHTTC-------CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHH
T ss_pred cCEEEEECCEEEecHHHHHHHc-CHHHHHHHcCCCCC----CceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHH
Confidence 4899999999999999999998 79999999987632 233443 6899999999999999999998889999999
Q ss_pred HHhhcCChhHHHHHh
Q psy11515 81 EAEYYGIAPLVKRLV 95 (117)
Q Consensus 81 ea~~~~l~~L~~~~~ 95 (117)
.|.+|+++.|++.|.
T Consensus 105 ~A~~~~~~~L~~~C~ 119 (124)
T 2ihc_A 105 CVEFLSVHNIEESCF 119 (124)
T ss_dssp HHHHHTBSSCCGGGG
T ss_pred HHHHHCCHHHHHHHH
Confidence 999999999999887
No 25
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=103.81 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=76.1
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEE--cCChhhHHHHHHhHhhCccccCCcCHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFI--DRDPKVFAIILNYLRTRDIDLKSTDLRTLRH 80 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fi--dr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ 80 (117)
.||+|.|||+.|.+||.+|++. +.||++||.+. ....+.+ |.+|+.|+.+|+|+|+|++.++..++..+++
T Consensus 34 ~Dv~l~v~~~~~~~Hk~vLaa~-S~~F~~~f~~~------~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~ 106 (129)
T 3ga1_A 34 CDVSVVVKGHAFKAHRAVLAAS-SSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMY 106 (129)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-BHHHHHHHHHC------CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHH
T ss_pred cceEEEECCEEEEehHHHHHHc-CHHHHHHHcCC------CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence 4899999999999999999998 79999999864 2344555 6899999999999999999998889999999
Q ss_pred HHhhcCChhHHHHHh
Q psy11515 81 EAEYYGIAPLVKRLV 95 (117)
Q Consensus 81 ea~~~~l~~L~~~~~ 95 (117)
.|.+|+++.|++.|.
T Consensus 107 ~A~~~~i~~l~~~C~ 121 (129)
T 3ga1_A 107 TAGFLQIQEIMEKGT 121 (129)
T ss_dssp HHHHTTBTTSSCC--
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999999887
No 26
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.59 E-value=1.4e-15 Score=113.10 Aligned_cols=106 Identities=18% Similarity=0.266 Sum_probs=88.0
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. ++||++||.+++.+.. .....+-|.+|..|+.+|+|+|+|++.+....+..++..|
T Consensus 175 ~Dv~l~v~~~~f~~Hk~vLaa~-S~~F~~~f~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A 252 (312)
T 3hqi_A 175 TDCCLCVAGQEFQAHKAILAAR-SPVFSAMFEHEMEESK-KNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAA 252 (312)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHTTC-----C-CSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred CceEEEECCEEEeHHHHHHHHc-CHHHHHHhccCccccC-CceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 4899999999999999999998 7999999998775432 2233345799999999999999999988777889999999
Q ss_pred hhcCChhHHHHHh--hhhhcCCCCcccccc
Q psy11515 83 EYYGIAPLVKRLV--LCEDLNQSSCGDVLF 110 (117)
Q Consensus 83 ~~~~l~~L~~~~~--~~~~~~~~~c~~~~~ 110 (117)
.+|+++.|.+.|+ +.+.++..||..++-
T Consensus 253 ~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~ 282 (312)
T 3hqi_A 253 DKYALERLKVMCEDALCSNLSVENAAEILI 282 (312)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999998 466789999987653
No 27
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.59 E-value=2.9e-15 Score=98.07 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=72.4
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCccccCCcCHHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDIDLKSTDLRTLRHEA 82 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l~l~~~~~~~l~~ea 82 (117)
.||+|.|||+.|.+||.+|++. +.||++ . ......-|.+|+.|+.+|+|+|||++.++..++..+++.|
T Consensus 31 ~Dv~l~v~~~~f~aHk~vLaa~-S~yF~~--~--------~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA 99 (119)
T 3m5b_A 31 CDTLITVGSQEFPAHSLVLAGV-SQQLGR--R--------GQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAA 99 (119)
T ss_dssp CCEEEEETTEEEEECHHHHHTT-CGGGCC--C--------EEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHH
T ss_pred cceEEEECCEEEeeEHHHHHHc-CHHHhc--C--------CCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHH
Confidence 4899999999999999999998 789875 1 1122234689999999999999999999989999999999
Q ss_pred hhcCChhHHHHHhh
Q psy11515 83 EYYGIAPLVKRLVL 96 (117)
Q Consensus 83 ~~~~l~~L~~~~~~ 96 (117)
.+|++..|++.|+.
T Consensus 100 ~~l~i~~l~~~C~~ 113 (119)
T 3m5b_A 100 RALGVQSLEEACWR 113 (119)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 99999999999984
No 28
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.56 E-value=5.3e-15 Score=96.14 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=72.5
Q ss_pred cceEEEeCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCcc-ccCCcCHHHHHHH
Q psy11515 3 LEPYLLIEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDI-DLKSTDLRTLRHE 81 (117)
Q Consensus 3 ~~V~lnVgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l-~l~~~~~~~l~~e 81 (117)
.||+|.|||+.|.+||.+|++. +.||++||.++ ......-|.+|..|+.+|+|+|+|++ .++..++..+++.
T Consensus 32 ~Dv~l~v~~~~f~aHk~vLaa~-S~~F~~~f~~~------~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~ 104 (116)
T 3fkc_A 32 CDVTVIVEDRKFRAHKNILSAS-STYFHQLFSVA------GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKS 104 (116)
T ss_dssp CCEEEEETTEEEEECHHHHHHH-CHHHHHHTTSC------CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHH
T ss_pred eeEEEEECCEEEehhHHHHHHc-CHHHHHHHcCC------CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHH
Confidence 4899999999999999999998 79999999864 22333457899999999999999999 6788889999999
Q ss_pred HhhcCChhHHH
Q psy11515 82 AEYYGIAPLVK 92 (117)
Q Consensus 82 a~~~~l~~L~~ 92 (117)
|++|+++.|.+
T Consensus 105 A~~l~i~~L~~ 115 (116)
T 3fkc_A 105 GQLLGVKFIAA 115 (116)
T ss_dssp HHHHTCHHHHT
T ss_pred HHHhCccccCc
Confidence 99999998864
No 29
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.98 E-value=1.3e-09 Score=74.34 Aligned_cols=88 Identities=10% Similarity=0.187 Sum_probs=70.1
Q ss_pred eEEEe-CCeEEEeeHhhhccCCCchhhhHHhC-cCCCCCCCCccE-EEcCChhhHHHHHHhHhhCc--------------
Q psy11515 5 PYLLI-EIPRFSTSIQTLMWVPDSFFTALLSG-RISSLKDETGAI-FIDRDPKVFAIILNYLRTRD-------------- 67 (117)
Q Consensus 5 V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~-~~~~~~~~~~~~-fidr~p~~F~~IL~flr~g~-------------- 67 (117)
|+|.. +|+.|.++|.+ ++. +.+|++||.+ ++.. ....+.+ +.+.++..++.|++|+++++
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~-S~~i~~m~~~~~~~~-e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQ-SVTIKTMLEDLGMDD-EGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHT-CHHHHHHTTSSCSS-------CEECTTSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHH-hHHHHHHHHhcCCcc-cccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77765 89999999998 666 7899999986 4321 1112334 44899999999999999998
Q ss_pred ------------cccCCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 68 ------------IDLKSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 68 ------------l~l~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
+.++...+..++.+|.|++|..|++.|+
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c 119 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 119 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5556677899999999999999999997
No 30
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=98.62 E-value=1.5e-07 Score=59.14 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=60.3
Q ss_pred ceEEEe-CCeEEEeeHhhhccCCCchhhhHHhC--cCCCCCCCCccE-EEcCChhhHHHHHHhHh-----h---Cccc--
Q psy11515 4 EPYLLI-EIPRFSTSIQTLMWVPDSFFTALLSG--RISSLKDETGAI-FIDRDPKVFAIILNYLR-----T---RDID-- 69 (117)
Q Consensus 4 ~V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~--~~~~~~~~~~~~-fidr~p~~F~~IL~flr-----~---g~l~-- 69 (117)
-|+|.- +|+.|.++|.+ ++. +.+|++||++ .+.+. +++++ +.+.++..++.|++|++ + +.++
T Consensus 3 ~v~L~SsDg~~F~v~r~v-A~~-S~~ik~m~~~~~~~~E~--~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~ 78 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREH-ALT-SGTIKAMLSGPGQFAEN--ETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF 78 (97)
T ss_dssp EEEEECTTCCEEEEEHHH-HTT-SHHHHHHHCCC----------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred EEEEEecCCcEEEecHHH-HHH-hHHHHHHHHhCCCcccc--CCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcC
Confidence 456655 89999999998 666 7899999985 33221 23444 44789999999999999 4 6676
Q ss_pred -cCCcCHHHHHHHHhhcCC
Q psy11515 70 -LKSTDLRTLRHEAEYYGI 87 (117)
Q Consensus 70 -l~~~~~~~l~~ea~~~~l 87 (117)
++...+.+|+.+|.|++.
T Consensus 79 ~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 79 PIAPEIALELLMAANFLDC 97 (97)
T ss_dssp CCCGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHhhhCC
Confidence 677889999999999873
No 31
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.58 E-value=1.2e-07 Score=63.47 Aligned_cols=84 Identities=11% Similarity=0.106 Sum_probs=67.9
Q ss_pred eEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCc----------------
Q psy11515 5 PYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRD---------------- 67 (117)
Q Consensus 5 V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~---------------- 67 (117)
|+|.- +|+.|.+++.+ ++. +.+++.|+++.- ++...+.+.++..++.|++|++..+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~-S~~ik~ml~~~~-----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQ-SVTIKTMLEDLG-----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGT-CHHHHHHHHHTC-----CSSEECTTCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHH-hHHHHHHHHhcC-----CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 67776 89999999998 566 789999998521 2233455889999999999999876
Q ss_pred ----------cccCCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 68 ----------IDLKSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 68 ----------l~l~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
+.++...+.+++.+|.|++|..|++.|+
T Consensus 77 ~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c 114 (141)
T 1fs1_B 77 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 114 (141)
T ss_dssp ----HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3345567889999999999999999997
No 32
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.26 E-value=2.2e-07 Score=63.36 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=41.9
Q ss_pred ceEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccEEEcCChhhHHHHHHhHhhCcc--------------
Q psy11515 4 EPYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAIFIDRDPKVFAIILNYLRTRDI-------------- 68 (117)
Q Consensus 4 ~V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~fidr~p~~F~~IL~flr~g~l-------------- 68 (117)
.|+|.. +|+.|.+++.+ ++. +.+++.|+.+.. ..+...+.+.++..++.|++|+++.+-
T Consensus 5 ~v~L~SsDg~~f~v~~~v-A~~-S~~ik~ml~~~~----~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~ 78 (160)
T 2p1m_A 5 KIVLKSSDGESFEVEEAV-ALE-SQTIAHMVEDDC----VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAAT 78 (160)
T ss_dssp ---CCC---------CHH-HHT-CTTTC----------------CCTTSCHHHHHHHHHC--------------------
T ss_pred EEEEEcCCCCEEEECHHH-HHH-hHHHHHHHHccC----CCCceeCCcCcHHHHHHHHHHHHHcccCCCccccccccccc
Confidence 466665 79999999998 566 689999997532 122333447899999999999999762
Q ss_pred -------------ccCCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 69 -------------DLKSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 69 -------------~l~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
.++...+..|+.+|.|++|..|++.|+
T Consensus 79 ~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c 118 (160)
T 2p1m_A 79 SDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTC 118 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHH
T ss_pred ccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 335567888999999999999999997
No 33
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=97.54 E-value=0.00052 Score=46.98 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=62.8
Q ss_pred ceEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCC--CCCCCccE-EEcCChhhHHHHHHhHhhCccc----------
Q psy11515 4 EPYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISS--LKDETGAI-FIDRDPKVFAIILNYLRTRDID---------- 69 (117)
Q Consensus 4 ~V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~--~~~~~~~~-fidr~p~~F~~IL~flr~g~l~---------- 69 (117)
.|+|.- +|+.|.+.+.+... +..++.|+...-.. ..++...+ +.+.++.+++.|+.|++.-+-.
T Consensus 8 ~i~L~SsDG~~F~V~~~vA~~--S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~ 85 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKIAER--SLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDS 85 (169)
T ss_dssp EEEEECTTCCEEEEEHHHHTT--SHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC------
T ss_pred eEEEEeCCCCEEEecHHHHHH--hHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccc
Confidence 355555 89999999998544 68899999743210 00112344 4489999999999999875421
Q ss_pred ---------------cCCcCHHHHHHHHhhcCChhHHHHHh
Q psy11515 70 ---------------LKSTDLRTLRHEAEYYGIAPLVKRLV 95 (117)
Q Consensus 70 ---------------l~~~~~~~l~~ea~~~~l~~L~~~~~ 95 (117)
++...+..|+.+|.|++|..|++.++
T Consensus 86 ~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c 126 (169)
T 3v7d_A 86 RKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGC 126 (169)
T ss_dssp --CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 12244678899999999999999886
No 34
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=97.53 E-value=0.00037 Score=43.67 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=57.5
Q ss_pred cceEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccE-EEcCChhhHHHHHHhHhhCcc---------c--
Q psy11515 3 LEPYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAI-FIDRDPKVFAIILNYLRTRDI---------D-- 69 (117)
Q Consensus 3 ~~V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~-fidr~p~~F~~IL~flr~g~l---------~-- 69 (117)
..|+|.- +|+.|.+++.+ ++. +..++.|++++. .++++++ +-+.++..++.|++|++.-+- .
T Consensus 4 ~~v~L~SsDg~~f~V~~~v-A~~-S~~ik~ml~~~~---e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~ 78 (99)
T 1hv2_A 4 DFVTLVSKDDKEYEISRSA-AMI-SPTLKAMIEGPF---RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIP 78 (99)
T ss_dssp SEEEEEETTTEEEEEEHHH-HTT-CHHHHHHHHSST---TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCC
T ss_pred cEEEEEecCCCEEEECHHH-HHH-hHHHHHHHhccc---ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCC
Confidence 4567776 99999999997 555 689999998743 1222334 448999999999999987541 1
Q ss_pred ---cCCcCHHHHHHHHhhcCC
Q psy11515 70 ---LKSTDLRTLRHEAEYYGI 87 (117)
Q Consensus 70 ---l~~~~~~~l~~ea~~~~l 87 (117)
++...+.+|+.+|.|++|
T Consensus 79 ~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 79 EFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCC
T ss_pred CccCCHHHHHHHHHHHHHhCc
Confidence 133456778888888775
No 35
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=97.50 E-value=0.00058 Score=42.51 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=56.4
Q ss_pred eEEEe-CCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccE-EEcCChhhHHHHHHhHhhCcc-----------ccC
Q psy11515 5 PYLLI-EIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAI-FIDRDPKVFAIILNYLRTRDI-----------DLK 71 (117)
Q Consensus 5 V~lnV-gG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~-fidr~p~~F~~IL~flr~g~l-----------~l~ 71 (117)
|+|.- +|+.|.+++.+ ++. +..++.|+.+.-.....+++++ +-+.++..++.|++|++.-+- .++
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~-S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd 80 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALT-SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 80 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTT-SHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHH-hHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccC
Confidence 56666 89999999997 555 6899999985211011112334 447899999999999987441 235
Q ss_pred CcCHHHHHHHHhhcCC
Q psy11515 72 STDLRTLRHEAEYYGI 87 (117)
Q Consensus 72 ~~~~~~l~~ea~~~~l 87 (117)
...+.+|+.+|.|++|
T Consensus 81 ~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 81 PEIALELLMAANFLDC 96 (96)
T ss_dssp TTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 5678899999999875
No 36
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=96.52 E-value=0.0052 Score=39.26 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=54.0
Q ss_pred ceEEE-eCCeEEEeeHhhhccCCCchhhhHHhCcCCCCCCCCccE-EEcCChhhHHHHHHhHhhCcc-----------cc
Q psy11515 4 EPYLL-IEIPRFSTSIQTLMWVPDSFFTALLSGRISSLKDETGAI-FIDRDPKVFAIILNYLRTRDI-----------DL 70 (117)
Q Consensus 4 ~V~ln-VgG~~F~~~~~tL~~~p~s~f~~~f~~~~~~~~~~~~~~-fidr~p~~F~~IL~flr~g~l-----------~l 70 (117)
.|+|. -+|+.|.+.+.+... +..++.|+.+.-.....+++.+ +-+.++..++.|+.|++.-+- .+
T Consensus 18 ~v~L~SsDG~~F~V~~~~A~~--S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~v 95 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREHALT--SGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 95 (112)
T ss_dssp EEEEECTTSCEEEEEHHHHHT--SHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHHHHH--hHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCccc
Confidence 46666 499999999996544 5789999874211011112334 447899999999999977442 12
Q ss_pred CCcCHHHHHHHHhhcCC
Q psy11515 71 KSTDLRTLRHEAEYYGI 87 (117)
Q Consensus 71 ~~~~~~~l~~ea~~~~l 87 (117)
+...+.+|+.+|.|++|
T Consensus 96 d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 96 APEIALELLMAANFLDC 112 (112)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33457788888888875
No 37
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=45.02 E-value=8.8 Score=24.47 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=31.4
Q ss_pred CChhhHHHHHHhHhhCccccC----C---cCHHHHHHHHh-hcCChhHHH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLK----S---TDLRTLRHEAE-YYGIAPLVK 92 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~----~---~~~~~l~~ea~-~~~l~~L~~ 92 (117)
+|+.+|..||+.++-+-++.+ . .+.+...+.|+ .+||+.+++
T Consensus 36 ~DG~Af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll~ 85 (127)
T 1wyq_A 36 RDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLD 85 (127)
T ss_dssp SSSHHHHHHHHHHCTTTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCCSC
T ss_pred cccHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccC
Confidence 799999999999999887652 1 34556666675 899987643
No 38
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=43.36 E-value=10 Score=17.61 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=10.9
Q ss_pred cCHHHHHHHHhhcC
Q psy11515 73 TDLRTLRHEAEYYG 86 (117)
Q Consensus 73 ~~~~~l~~ea~~~~ 86 (117)
.+++.++++|+|.-
T Consensus 3 ~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 3 MNIQMLLEAADYLE 16 (26)
T ss_dssp CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 36788999999863
No 39
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=36.61 E-value=10 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=15.6
Q ss_pred ccccCCcCHHHHHHHHhhcCChh
Q psy11515 67 DIDLKSTDLRTLRHEAEYYGIAP 89 (117)
Q Consensus 67 ~l~l~~~~~~~l~~ea~~~~l~~ 89 (117)
++.++......=+-||.||++++
T Consensus 16 KLdIdfGaegNrYYeanYwqFPD 38 (107)
T 1i17_A 16 KLDIDFGAEGNRYYAANYWQFPD 38 (107)
T ss_dssp CCCCCCCHHHHHHHHHHGGGSCS
T ss_pred eeeeecccccchhhhhccccCCC
Confidence 35666555556677888988775
No 40
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=36.50 E-value=11 Score=23.28 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=31.7
Q ss_pred CChhhHHHHHHhHhhCccccC---C----cCHHHHHHHHh-hcCChhHHHH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLK---S----TDLRTLRHEAE-YYGIAPLVKR 93 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~---~----~~~~~l~~ea~-~~~l~~L~~~ 93 (117)
+|+.+|..|++.++-+-++.+ . .+.+...+.|+ .+||+.+++.
T Consensus 32 ~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~ 82 (109)
T 1bkr_A 32 RDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDP 82 (109)
T ss_dssp TTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCH
T ss_pred cccHHHHHHHHHHCcCCCCHHHcCcCCHHHHHHHHHHHHHHHcCCCccCCH
Confidence 799999999999999877642 1 23555666675 7999876543
No 41
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=34.96 E-value=12 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=16.0
Q ss_pred ccccCCcCHHHHHHHHhhcCChh
Q psy11515 67 DIDLKSTDLRTLRHEAEYYGIAP 89 (117)
Q Consensus 67 ~l~l~~~~~~~l~~ea~~~~l~~ 89 (117)
++.++......=+-||.||++++
T Consensus 42 KLdIDfGaEgNrYYeanYwqFPD 64 (129)
T 1lg4_A 42 KLDIDFGAEGNRYYEANYWQFPD 64 (129)
T ss_dssp CCSCCCCHHHHHHHHHHGGGSCS
T ss_pred eeeeecccccchhhhhccccCCC
Confidence 36666555566677888888775
No 42
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=33.94 E-value=6.9 Score=24.62 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=31.3
Q ss_pred CChhhHHHHHHhHhhCccccC-------CcCHHHHHHHHh-hcCChhHHHH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLK-------STDLRTLRHEAE-YYGIAPLVKR 93 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~-------~~~~~~l~~ea~-~~~l~~L~~~ 93 (117)
+|+.+|..|++.++-+-++.+ ..+.+...+.|+ .+||+.+++.
T Consensus 37 ~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~ 87 (118)
T 1bhd_A 37 TDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDP 87 (118)
T ss_dssp TTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSCH
T ss_pred cCcHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCH
Confidence 799999999999998877641 123555566675 8999876543
No 43
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.33 E-value=17 Score=22.73 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=30.2
Q ss_pred CChhhHHHHHHhHhhCccccC----C---cCHHHHHHHHhhcCChhHHH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLK----S---TDLRTLRHEAEYYGIAPLVK 92 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~----~---~~~~~l~~ea~~~~l~~L~~ 92 (117)
+|+.+|..||+.++-+-++.+ . .+.+...+.|+.+||+.++.
T Consensus 38 ~dG~af~aLi~~~~P~lid~~~l~~~~~~~n~~~af~~a~~LGi~~ll~ 86 (119)
T 2d89_A 38 RNGLSFCAILHHFRPDLIDYKSLNPQDIKENNKKAYDGFASIGISRLLE 86 (119)
T ss_dssp HTTHHHHHHHHHHCTTTSCGGGCCTTCSHHHHHHHHHHHHHHTCCCCSC
T ss_pred cccHHHHHHHHHHCcCcCChhhhcccCHHHHHHHHHHHHHHhCCCcccC
Confidence 689999999999999877641 2 23445555567888876543
No 44
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=29.60 E-value=37 Score=20.45 Aligned_cols=14 Identities=7% Similarity=-0.123 Sum_probs=12.2
Q ss_pred cceEEEeCCeEEEe
Q psy11515 3 LEPYLLIEIPRFST 16 (117)
Q Consensus 3 ~~V~lnVgG~~F~~ 16 (117)
..|+++|.|+.|++
T Consensus 5 ~~v~V~I~G~~Y~l 18 (104)
T 1t3u_A 5 NTLTVQILDKEYCI 18 (104)
T ss_dssp -CEEEEETTEEEEE
T ss_pred CeEEEEECCEEEEe
Confidence 47999999999988
No 45
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=29.37 E-value=14 Score=23.08 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=30.9
Q ss_pred CChhhHHHHHHhHhhCccccCC-------cCHHHHHHHHh-hcCChhHHH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLKS-------TDLRTLRHEAE-YYGIAPLVK 92 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~~-------~~~~~l~~ea~-~~~l~~L~~ 92 (117)
+|+.+|..||+.++-+-++.+. .+.+...+.|+ .+||+.++.
T Consensus 36 ~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~ 85 (116)
T 1wyl_A 36 ADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVVS 85 (116)
T ss_dssp TSSHHHHHHHHHHCTTSCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCSC
T ss_pred cccHHHHHHHHHHCcCCCCHHHhccCCHHHHHHHHHHHHHHHcCCccccC
Confidence 7999999999999988876521 23556666675 499986544
No 46
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=29.06 E-value=10 Score=23.89 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=31.6
Q ss_pred CChhhHHHHHHhHhhCccccC---C----cCHHHHHHHHh-hcCChhHHHH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLK---S----TDLRTLRHEAE-YYGIAPLVKR 93 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~---~----~~~~~l~~ea~-~~~l~~L~~~ 93 (117)
+|+.+|..||+.++-+-++.+ . .+.+...+.|+ .+||+.++..
T Consensus 38 ~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~p 88 (121)
T 2d88_A 38 KSGLALCAIIHRYRPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTG 88 (121)
T ss_dssp HTSHHHHHHHHHHCTTTSCTTTSCTTCHHHHHHHHHHHHHHHTCCCCSSCH
T ss_pred cccHHHHHHHHHhCcCcCCHHHcCccCHHHHHHHHHHHHHHHcCCCCcCCH
Confidence 689999999999999877652 1 23555666675 6999876543
No 47
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=28.30 E-value=23 Score=22.18 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=15.1
Q ss_pred ChhhHHHHHHhHhhCccc
Q psy11515 52 DPKVFAIILNYLRTRDID 69 (117)
Q Consensus 52 ~p~~F~~IL~flr~g~l~ 69 (117)
.|..|..|++|||-|--.
T Consensus 9 ~p~~l~siv~WLRaGYPe 26 (107)
T 3ol3_A 9 TTTFMDNVLGWLHKGYPE 26 (107)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHccCCC
Confidence 577899999999998753
No 48
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=25.80 E-value=38 Score=22.33 Aligned_cols=17 Identities=18% Similarity=-0.134 Sum_probs=14.9
Q ss_pred CCcceEEEeCCeEEEee
Q psy11515 1 MKLEPYLLIEIPRFSTS 17 (117)
Q Consensus 1 ~~~~V~lnVgG~~F~~~ 17 (117)
|+..|+|.|.|+.+++.
T Consensus 1 m~~~i~~~vNG~~~~v~ 17 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDL 17 (161)
T ss_dssp CEEEEEEEETTEEEEEE
T ss_pred CCceEEEEECCEEEEEe
Confidence 77889999999999873
No 49
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=23.30 E-value=56 Score=15.42 Aligned_cols=16 Identities=13% Similarity=0.411 Sum_probs=12.8
Q ss_pred hhHHHHHHhHhhCccc
Q psy11515 54 KVFAIILNYLRTRDID 69 (117)
Q Consensus 54 ~~F~~IL~flr~g~l~ 69 (117)
.+...||.|+.+|+-.
T Consensus 8 qmltdilsfmksgkra 23 (33)
T 3c0t_B 8 QMLTDILSFMKSGKRA 23 (33)
T ss_dssp HHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcchHH
Confidence 4677899999999853
No 50
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=22.89 E-value=9.6 Score=24.07 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=10.4
Q ss_pred CCccE--EEcCChhhHH
Q psy11515 43 ETGAI--FIDRDPKVFA 57 (117)
Q Consensus 43 ~~~~~--fidr~p~~F~ 57 (117)
+.+.+ +||+||+...
T Consensus 85 ekG~~I~yId~~pe~l~ 101 (111)
T 2v1n_A 85 PKGWYIQYIDRDPETIR 101 (111)
T ss_dssp TTEEEEEECCSSHHHHH
T ss_pred CCceEEEeecCCHHHHH
Confidence 44544 7799998754
No 51
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=22.28 E-value=20 Score=22.80 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.9
Q ss_pred CChhhHHHHHHhHhhCccccC---C----cCHHHHHHHHh-hcCChhHHH
Q psy11515 51 RDPKVFAIILNYLRTRDIDLK---S----TDLRTLRHEAE-YYGIAPLVK 92 (117)
Q Consensus 51 r~p~~F~~IL~flr~g~l~l~---~----~~~~~l~~ea~-~~~l~~L~~ 92 (117)
+|+.+|..||+.++-+-++.+ . .+.+...+.|+ .+||+.++.
T Consensus 36 ~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~lL~ 85 (128)
T 2d87_A 36 SDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLD 85 (128)
T ss_dssp TSSHHHHHHHHHHCTTTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCSC
T ss_pred cccHHHHHHHHHHCcCcCCHHHcCccCHHHHHHHHHHHHHHcCCCCcccC
Confidence 799999999999998887652 1 23455666664 478876543
No 52
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=20.59 E-value=68 Score=13.98 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=12.1
Q ss_pred CCeEEEeeHhhhccCCC
Q psy11515 10 EIPRFSTSIQTLMWVPD 26 (117)
Q Consensus 10 gG~~F~~~~~tL~~~p~ 26 (117)
||++.-=.|.-|.++.+
T Consensus 2 GGTrIiYdR~fLl~~rn 18 (21)
T 3hxi_C 2 GSGRIIYDRKFLMECRN 18 (26)
T ss_pred CceEEEEeHHHHHHhcc
Confidence 67777777877776643
Done!